RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1442
         (186 letters)



>d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD
          {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 282

 Score = 25.9 bits (57), Expect = 3.1
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 14/67 (20%)

Query: 25 IMQDPVKKSRGGLQYVSDRNTMDNTYAMAYV--------SGLGYGTISAA------FSLL 70
          ++ DP++  R   +++ DR+      +  Y+         G+  GT ++A       SL 
Sbjct: 1  MLIDPIELYRYPEKWIKDRDAEKKVRSGLYILTEDGYLRRGITTGTTASAAAVAAIASLK 60

Query: 71 NVLDQVS 77
            +++V 
Sbjct: 61 EKVEKVK 67


>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA
          {Haemophilus influenzae [TaxId: 727]}
          Length = 100

 Score = 24.1 bits (52), Expect = 5.6
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22 LTTIMQDPVKKSRGGLQYVSD-RNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSG 78
          +  I+Q  VK  R G+  VSD   + D +YA  +V+ L      A    +  L++ S 
Sbjct: 13 IAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASP 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 649,682
Number of extensions: 26482
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 7
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.2 bits)