RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14428
(583 letters)
>gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase.
Length = 423
Score = 504 bits (1300), Expect = e-176
Identities = 177/382 (46%), Positives = 240/382 (62%), Gaps = 43/382 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F DP P K+NLGVGAYR E+GKP VL V++AE+R+ + + EY I G A+F KL+A
Sbjct: 42 FLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSA 101
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+LAYG D PA K+NR+A VQ +SG+GSLR+G FL RFYPG T+Y P PTW H
Sbjct: 102 KLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPG-STIYIPNPTWGNHHNIFR 160
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
D+ + V YRY+D KT GLDF G++ED+KA P+ S + L +HNPTGVD + +QW Q++
Sbjct: 161 DAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQIS 220
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
++K ++ PFFD AY G SGD D DA S+R F ++ ++ +AQS++KNMGLYGERVG
Sbjct: 221 DLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGA 280
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
SV+ ++D R+ SQLK++ R P+
Sbjct: 281 LSVVCKSADVAVRVKSQLKLIAR------PM----------------------------- 305
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
YSNPPIHGA IV IL DP+L ++W +E KGM++RI S+R++L + +GS
Sbjct: 306 -------YSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSP 358
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+W HIT Q GMF +TGL+ Q
Sbjct: 359 GDWSHITKQIGMFSFTGLNKEQ 380
Score = 112 bits (283), Expect = 8e-27
Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 2 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT 61
A VQ +SG+GSLR+G FL RFYPG T+Y P PTW H D+ + V YRY+D KT
Sbjct: 118 ATVQCLSGTGSLRLGAEFLARFYPG-STIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKT 176
Query: 62 NGLDFAGMMEDIKLA 76
GLDF G++ED+K A
Sbjct: 177 RGLDFDGLLEDLKAA 191
Score = 111 bits (281), Expect = 2e-26
Identities = 40/79 (50%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 70 MEDIKLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYR 129
+++ ++A VQ +SG+GSLR+G FL RFYPG T+Y P PTW H D+ + V YR
Sbjct: 112 IKENRVATVQCLSGTGSLRLGAEFLARFYPG-STIYIPNPTWGNHHNIFRDAGVPVRTYR 170
Query: 130 YFDNKTNGLDFAGMMEDIK 148
Y+D KT GLDF G++ED+K
Sbjct: 171 YYDPKTRGLDFDGLLEDLK 189
>gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional.
Length = 404
Score = 480 bits (1239), Expect = e-167
Identities = 177/382 (46%), Positives = 238/382 (62%), Gaps = 42/382 (10%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F DP P K+NLG+GAYR E+GKPYVL SV++AE+ I EKNLD EY I G F + A
Sbjct: 23 FKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQ 82
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+L +GE A + R+A VQ +SG+G+LR+G FL+RF P TVY PTW HV
Sbjct: 83 KLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFK 142
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
+ LNV YRY+D KT GLDF GM+ED++ P S++ L +HNPTGVD +E+QW+++A
Sbjct: 143 SAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIA 202
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
V+K+++L PFFDMAY G SGD DKDA+++R FA+ + +AQSFSKNMGLYGER+G
Sbjct: 203 DVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGA 262
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
++ +N +E ++SQL
Sbjct: 263 LHIVC---------------------ANK---------------------EEAANVLSQL 280
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
K++IR YS+PPIHGARI ILSDP+L+A+W E K MS RI ++R+ L ++ GS
Sbjct: 281 KLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSP 340
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+W+HI NQ GMF +TGL+ Q
Sbjct: 341 GDWEHIINQIGMFSFTGLTKEQ 362
Score = 98.5 bits (246), Expect = 4e-22
Identities = 39/79 (49%), Positives = 51/79 (64%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
++A VQ +SG+G+LR+G FL+RF P TVY PTW HV + LNV YRY+D
Sbjct: 97 RIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDP 156
Query: 134 KTNGLDFAGMMEDIKPLKQ 152
KT GLDF GM+ED++
Sbjct: 157 KTKGLDFDGMLEDLRTAPN 175
Score = 97.3 bits (243), Expect = 1e-21
Identities = 40/76 (52%), Positives = 51/76 (67%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+A VQ +SG+G+LR+G FL+RF P TVY PTW HV + LNV YRY+D K
Sbjct: 98 IATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPK 157
Query: 61 TNGLDFAGMMEDIKLA 76
T GLDF GM+ED++ A
Sbjct: 158 TKGLDFDGMLEDLRTA 173
>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino
acid transport and metabolism].
Length = 396
Score = 396 bits (1019), Expect = e-134
Identities = 161/392 (41%), Positives = 227/392 (57%), Gaps = 47/392 (11%)
Query: 147 IKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIG 206
I LK+ F DP P K+NLG+G Y+ EDGK VL +VK+AE+R+ E+ Y I
Sbjct: 13 ILGLKEA---FKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIE 69
Query: 207 GDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTP 266
G +F + +L +G D PA ++R+A VQ + G+G+LRV FL RF+P TV+ P
Sbjct: 70 GLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPD-ATVWISDP 128
Query: 267 TWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVD 326
TW H + L V Y Y+D +T GLDF GM+ D+K PE S++ L HNPTG+D
Sbjct: 129 TWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGID 188
Query: 327 LSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKN 386
+E+QW++LA ++K+R L PFFD+AY G G ++DA++LR FA+ +L +A SFSKN
Sbjct: 189 PTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLVASSFSKN 247
Query: 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQC 446
GLYGERVG SV+ ++E A
Sbjct: 248 FGLYGERVGALSVVAEDAEE-------------------------------------AD- 269
Query: 447 DETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREEL 506
R++SQLK +IR YSNPP HGA +V IL++P+L+A+W +E + M RI +R+ L
Sbjct: 270 ----RVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQAL 325
Query: 507 KSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ G+ +N+D I +Q+GMF YTGLS Q
Sbjct: 326 VDALKALGAPRNFDFIISQRGMFSYTGLSPEQ 357
Score = 76.1 bits (188), Expect = 9e-15
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 2 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT 61
A VQ + G+G+LRV FL RF+P TV+ PTW H + L V Y Y+D +T
Sbjct: 96 ATVQTLGGTGALRVAADFLARFFPD-ATVWISDPTWPNHKAIFEAAGLEVETYPYYDAET 154
Query: 62 NGLDFAGMMEDIKLA 76
GLDF GM+ D+K A
Sbjct: 155 KGLDFDGMLADLKTA 169
Score = 76.1 bits (188), Expect = 9e-15
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 76 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT 135
A VQ + G+G+LRV FL RF+P TV+ PTW H + L V Y Y+D +T
Sbjct: 96 ATVQTLGGTGALRVAADFLARFFPD-ATVWISDPTWPNHKAIFEAAGLEVETYPYYDAET 154
Query: 136 NGLDFAGMMEDIK 148
GLDF GM+ D+K
Sbjct: 155 KGLDFDGMLADLK 167
>gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase;
Provisional.
Length = 396
Score = 387 bits (997), Expect = e-130
Identities = 151/382 (39%), Positives = 207/382 (54%), Gaps = 44/382 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F DP P K+NLGVG Y+ E G+ VL +VK+AE R+ E Y I G A + +
Sbjct: 20 FRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQ 79
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+L +G D PA R+A VQ G+G+LRVG FL+R +P V+ PTW H
Sbjct: 80 ELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPD-AKVWVSDPTWPNHRAIFE 138
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
+ L V Y Y+D T GLDF M+ D+ P ++ L HNPTG DL+ +QW +LA
Sbjct: 139 AAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELA 198
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
++K+R L PF D+AY G G ++DA+ LR FA +L +A SFSKN GLYGERVG
Sbjct: 199 ELLKERGLIPFLDIAYQGFGDG-LEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGA 257
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
SV+ ++E +R++SQLK IR +N
Sbjct: 258 LSVVAEDAEEADRVLSQLKATIR---TN-------------------------------- 282
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
YSNPP HGA IV IL+DP+L+A+W E + M RI ++R+ L + KG
Sbjct: 283 -------YSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPS 335
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+++D I Q+GMF Y+GL+ Q
Sbjct: 336 RDFDFIARQRGMFSYSGLTPEQ 357
Score = 76.7 bits (190), Expect = 5e-15
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 75 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 134
+A VQ G+G+LRVG FL+R +P V+ PTW H + L V Y Y+D
Sbjct: 95 VATVQTPGGTGALRVGADFLKRAFPD-AKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAA 153
Query: 135 TNGLDFAGMMEDIKPLK 151
T GLDF M+ D+
Sbjct: 154 TKGLDFDAMLADLSQAP 170
Score = 76.7 bits (190), Expect = 5e-15
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+A VQ G+G+LRVG FL+R +P V+ PTW H + L V Y Y+D
Sbjct: 95 VATVQTPGGTGALRVGADFLKRAFPD-AKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAA 153
Query: 61 TNGLDFAGMMEDIK 74
T GLDF M+ D+
Sbjct: 154 TKGLDFDAMLADLS 167
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 219 bits (560), Expect = 3e-66
Identities = 97/375 (25%), Positives = 138/375 (36%), Gaps = 66/375 (17%)
Query: 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGE 222
K+NLG Y G+ LP+V +AE+ + Y G + + A+
Sbjct: 1 TDKINLGSNEYLGDS---GTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRS 57
Query: 223 DFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNV 282
P K +R A V SG+G+ FL R PG + P PT+ ++R + V
Sbjct: 58 --PVLKLDREAAVVFGSGAGANIEALIFLLRLNPG-DAILVPAPTYPSYIRIFRLAGGEV 114
Query: 283 GAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQR 342
Y + + LDF + +K E + + L TS HNPTG + ++ +L + K+
Sbjct: 115 VRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEH 174
Query: 343 HLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTP 402
++ D AY G G DA + R E L + SFSK GL G RVG
Sbjct: 175 NILLLVDEAYAGFVFG--SLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILG--- 229
Query: 403 TSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRG 462
++SQL+ L R FYS
Sbjct: 230 ----NAAVISQLRKLARPFYS--------------------------------------- 246
Query: 463 FYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHI 522
H LSDP L A EE M RI R+ L+ + G +
Sbjct: 247 -----STHLQAAAAAALSDPLLVASELEE---MRQRIKERRDYLRDGLEAAG----LSVL 294
Query: 523 TNQKGMFCYTGLSAS 537
+Q G F TGL
Sbjct: 295 PSQAGFFLLTGLDPE 309
Score = 52.7 bits (127), Expect = 2e-07
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 78 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNG 137
V SG+G+ FL R PG + P PT+ ++R + V Y + +
Sbjct: 68 VVFGSGAGANIEALIFLLRLNPG-DAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSNDFH 126
Query: 138 LDFAGMMEDIKPLKQQLKGF 157
LDF + +K + K
Sbjct: 127 LDFDALEAALKEATEGNKVV 146
Score = 50.8 bits (122), Expect = 1e-06
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 4 VQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNG 63
V SG+G+ FL R PG + P PT+ ++R + V Y + +
Sbjct: 68 VVFGSGAGANIEALIFLLRLNPG-DAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSNDFH 126
Query: 64 LDFAGMMEDIK 74
LDF + +K
Sbjct: 127 LDFDALEAALK 137
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 131 bits (332), Expect = 7e-34
Identities = 59/276 (21%), Positives = 98/276 (35%), Gaps = 24/276 (8%)
Query: 166 MNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFP 225
++L +G P V EA + Y G + + A+
Sbjct: 1 IDLSIGEPD-----FPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGV 55
Query: 226 AFKDNRLAIVQGISGSGSLR-VGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGA 284
IV +L + A L PG V P PT+ G+ + V
Sbjct: 56 DVPPEE--IVVTNGAQEALSLLLRALLN---PG-DEVLVPDPTYPGYEAAARLAGAEVVP 109
Query: 285 YRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHL 344
+ G + + P+ +L+L + +NPTG LSE++ +LA + K+ +
Sbjct: 110 VPLDEE--GGFLLDLELLEAAKTPKTKLLYL-NNPNNPTGAVLSEEELEELAELAKKHGI 166
Query: 345 YPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTS 404
D AY L +D + ++ + +SFSK GL G R+G + + P
Sbjct: 167 LIISDEAYAELV---YDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIG-YLIAPP-- 220
Query: 405 DETERIMSQLKILIRGFYSNPPIHGARIVTEILSDP 440
E ++ +LK L+ S P L D
Sbjct: 221 ---EELLERLKKLLPYTTSGPSTLSQAAAAAALDDG 253
Score = 31.5 bits (72), Expect = 1.2
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 77 IVQGISGSGSLR-VGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT 135
IV +L + A L PG V P PT+ G+ + V +
Sbjct: 62 IVVTNGAQEALSLLLRALLN---PG-DEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGG 117
Query: 136 NGLDFAGMMEDIKP 149
LD + P
Sbjct: 118 FLLDLELLEAAKTP 131
Score = 30.0 bits (68), Expect = 3.4
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 3 IVQGISGSGSLR-VGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT 61
IV +L + A L PG V P PT+ G+ + V +
Sbjct: 62 IVVTNGAQEALSLLLRALLN---PG-DEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGG 117
Query: 62 NGLDFAGMM----EDIKLAIV 78
LD + KL +
Sbjct: 118 FLLDLELLEAAKTPKTKLLYL 138
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 54.6 bits (132), Expect = 6e-08
Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 12/171 (7%)
Query: 302 EDI-KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360
ED+ A+ ++ + S +NPTG S+++ + + + ++ + D Y L +
Sbjct: 154 EDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELV---Y 210
Query: 361 DKDAF-SLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIR 419
D S+ A + SFSK G+ G R+G + V P E +++ L+ L
Sbjct: 211 DGAEHPSILELAGARDRTITINSFSKTYGMTGWRIG-WVVGPP-----EELIAALRKLKS 264
Query: 420 GFYSNPPIHGARIVTEILSDPKLKAQCDET-ERIMSQLKILIRGFYSNPPI 469
S P L+ P+ +E E + +L+ +
Sbjct: 265 YLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGL 315
>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional.
Length = 394
Score = 43.6 bits (104), Expect = 2e-04
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 19/130 (14%)
Query: 318 SSHNPTGVDLSEDQWRQLAVVVKQRH------LYPFFDMAYLGLTSGDFD--KDAFSLRY 369
S +NPTGV SE+ + LA +++++ +Y D Y + +D + + +Y
Sbjct: 176 SPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIV---YDGAEVPYIFKY 232
Query: 370 FAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIR--GFYSNPPI 427
+ + + SFSK++ L GER+G + + P ++ + +++ L R GF N P
Sbjct: 233 YDNSI----VVYSFSKSLSLPGERIG-YIAVNPEMEDADDLVAALVFANRILGF-VNAPA 286
Query: 428 HGARIVTEIL 437
R+V + L
Sbjct: 287 LMQRVVAKCL 296
>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional.
Length = 387
Score = 42.3 bits (100), Expect = 5e-04
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 309 ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD-------FD 361
++ L S NPTG LS D+ L+ ++ R + D Y GLT G D
Sbjct: 164 ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVD 223
Query: 362 KDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
DAF L SFSK G+ G R+G
Sbjct: 224 DDAFVL-------------NSFSKYFGMTGWRLG 244
>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase;
Validated.
Length = 391
Score = 41.2 bits (97), Expect = 0.001
Identities = 59/219 (26%), Positives = 88/219 (40%), Gaps = 28/219 (12%)
Query: 186 VKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLA---YGEDFPAFKDNRLAIVQGISG-- 240
VKEA +R + N H Y + G + + AA Y D+ +N + + G +
Sbjct: 48 VKEAAKRAIDANQSH-YTGMAGLLELRQAAADFVKEKYNLDYAP--ENEILVTIGATEAL 104
Query: 241 SGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDF--- 297
S SL TA LE PG V P P + G+ L D N DF
Sbjct: 105 SASL---TAILE---PG-DKVLLPAPAYPGYEPIVN---LVGAEIVEIDTTEN--DFVLT 152
Query: 298 AGMMED-IKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLT 356
M+E I ++ + NPTGV S +Q + LA V+K+ ++ D Y LT
Sbjct: 153 PEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELT 212
Query: 357 SGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+ S+ + + Q L SK+ + G R+G
Sbjct: 213 YT--GEPHVSIAEYLPD--QTILINGLSKSHAMTGWRIG 247
>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional.
Length = 384
Score = 39.7 bits (93), Expect = 0.003
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377
S +NPTG S++ ++A + + L+ D Y G + F +D + A +
Sbjct: 170 SPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFS---FYEDFVPMATLAGMPERT 226
Query: 378 CLAQSFSKNMGLYGERVGTFSVLTPT 403
SFSK+ + G R+G V+ P
Sbjct: 227 ITFGSFSKDFAMTGWRIGY--VIAPD 250
>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated.
Length = 387
Score = 38.2 bits (89), Expect = 0.011
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 261 VYFPTPTWNGH---VRFCTDSRLNVGAYR-YFDNKTNGLDF-AGMMEDIKAMPERSILFL 315
V P P + G+ +R C GA + D ++ G A +E+ A+ E++ +
Sbjct: 116 VILPAPIYPGYEPIIRLC-------GAKPVFIDTRSTGFRLTAEALEN--AITEKTRCVV 166
Query: 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVG 375
NPTGV LS+++ + +A V+K ++++ D Y L +++ S+ +F +
Sbjct: 167 LPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELV---YEQPHTSIAHFPEMRE 223
Query: 376 QLCLAQSFSKNMGLYGERVG 395
+ + SK+ + G R+G
Sbjct: 224 KTIVINGLSKSHSMTGWRIG 243
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 36.2 bits (84), Expect = 0.018
Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 20/176 (11%)
Query: 227 FKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSR--LNVGA 284
+ V SG+G+ L PG V
Sbjct: 13 LQPGNDKAVFVPSGTGANEAALLAL--LGPG-DEVIVDANGHGSRYWV-AAELAGAKPVP 68
Query: 285 YRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHL 344
D GLD A ++E++KA P +++ + ++ + + +++ + K+ +
Sbjct: 69 VPVDDAGYGGLDVA-ILEELKAKPNVALIVITPNTTSGGVLVPL----KEIRKIAKEYGI 123
Query: 345 YPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVL 400
D A G S + E G + S KN+G GE G V
Sbjct: 124 LLLVDAASAGGASP-------APGVLIPEGGADVVTFSLHKNLG--GEGGGVVIVK 170
>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase;
Provisional.
Length = 357
Score = 37.0 bits (86), Expect = 0.020
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 309 ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR 368
ER I++L TS HNPTG ++ D+ LA + L D AY G+F + S
Sbjct: 155 ER-IVYL-TSPHNPTGSEIPLDEVEALAERTDEETLV-VVDEAY-----GEF-AERPSAV 205
Query: 369 YFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERI 410
+E + + ++FSK GL G R+G V +D R+
Sbjct: 206 ALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARV 247
>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated.
Length = 388
Score = 36.2 bits (84), Expect = 0.038
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 315 LQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEV 374
L S NPTG ++ D+ R++ V+ R + D Y GL+ A SL
Sbjct: 168 LLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSL------- 220
Query: 375 GQ-LCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKI 416
G + SFSK + G R+G V E++ L I
Sbjct: 221 GDDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQNLFI 263
>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.
Length = 354
Score = 36.1 bits (84), Expect = 0.040
Identities = 21/97 (21%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 302 EDIKAMPERSI-LFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360
E + + I L + +NPTG +S+++ +++ ++R++Y D A++ DF
Sbjct: 132 EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFM-----DF 186
Query: 361 --DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+ + S+ + + L + ++F+K + G R+G
Sbjct: 187 LEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLG 223
>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). This clade includes characterized species
in plants and Chlamydia. Every member of this clade is
from a genome which possesses most of the lysine
biosynthesis pathway but lacks any of the known
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Length = 402
Score = 36.2 bits (84), Expect = 0.041
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 303 DIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG-LTSGDFD 361
++ P I++L S +NPTG L+++Q ++L + FD AY ++
Sbjct: 167 ELPEEPHIDIIYL-CSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLP 225
Query: 362 KDAFSL---RYFAKEVGQLCLAQSFSKNMGLYGERVG 395
F + R+ A E SFSK G G R+G
Sbjct: 226 HSIFEIPGARFCAIEFR------SFSKTAGFTGVRLG 256
>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase. Alternate
names: histidinol-phosphate transaminase; imidazole
acetol-phosphate transaminase Histidinol-phosphate
aminotransferase is a pyridoxal-phosphate dependent
enzyme [Amino acid biosynthesis, Histidine family].
Length = 346
Score = 36.1 bits (84), Expect = 0.042
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 28/112 (25%)
Query: 293 NGLDFAGMMEDIKAMPERSILFLQTSSHNPTG--VDLSE-----DQWRQLAVVVKQRHLY 345
LD ++ I P+ ++FL S +NPTG + S+ ++ + A+VV
Sbjct: 128 GQLDLEDILVAIDDKPK--LVFL-CSPNNPTGNLLSRSDIEAVLERTPEDALVV------ 178
Query: 346 PFFDMAYLGLTSGDF--DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
D AY G+F + L E L + ++ SK GL G R+G
Sbjct: 179 --VDEAY-----GEFSGEPSTLPL---LAEYPNLIVLRTLSKAFGLAGLRIG 220
>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
Length = 378
Score = 35.5 bits (82), Expect = 0.071
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 296 DFAGMMEDIKA-MPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG 354
+F I+A + ++ L S +NPTG L++ + ++AV+V++ L D Y
Sbjct: 139 EFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAE 198
Query: 355 LTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
LT +D+ S + L FSK + G R+G
Sbjct: 199 LT---YDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLG 236
>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 34.6 bits (80), Expect = 0.12
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 20/148 (13%)
Query: 249 AFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP 308
AF+E PG TV P PT++ + + V K LD ++ I+
Sbjct: 94 AFVE---PG-DTVLIPEPTFSMYEIAAQLAGAEV---VKVPLKEFRLDLDAILAAIRDKT 146
Query: 309 ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF-DKDAFSL 367
++FL + +NPTG L ++ R L + + L D AY +F + + L
Sbjct: 147 --KLVFL-CNPNNPTGTLLPREELRALLEALPEGGLV-VIDEAY-----IEFSPESSLEL 197
Query: 368 RYFAKEVGQLCLAQSFSKNMGLYGERVG 395
K L + ++FSK GL G RVG
Sbjct: 198 ---LKYPPNLIVLRTFSKAFGLAGLRVG 222
>gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional.
Length = 388
Score = 34.2 bits (79), Expect = 0.17
Identities = 59/251 (23%), Positives = 92/251 (36%), Gaps = 49/251 (19%)
Query: 260 TVYFPTPTW-NGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPE--RSILFLQ 316
TV P W N + F T + Y F ++ G D + E ++A + I+ L
Sbjct: 95 TVLLPDHNWGNYKLTFNTRRGAEIVTYPIF-DEDGGFDTDALKEALQAAYNKGKVIVILN 153
Query: 317 TSSHNPTGVDLSEDQWRQLAVVVKQ-----RHLYPFFDMAYLGLTSGDFDKDAFSLRYFA 371
+NPTG +E + + +K+ + D AY GL F +D++ FA
Sbjct: 154 FP-NNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGL----FYEDSYKESLFA 208
Query: 372 KEVGQLCLAQSFS-----------KNMGLYGERVG--TFSVLTPTSDETERIMSQ-LKIL 417
LA S K ++G RVG TF +S + + + +K L
Sbjct: 209 A------LANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGL 262
Query: 418 IRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTE 477
IR SN P V L+ P+ + E +I+ + R E
Sbjct: 263 IRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKE-----R----------YEKTKE 307
Query: 478 ILSDPKLKAQW 488
+L D K W
Sbjct: 308 VLYDGKYDDAW 318
>gnl|CDD|216386 pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family
M19).
Length = 316
Score = 33.7 bits (78), Expect = 0.24
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 24/104 (23%)
Query: 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGA 284
A K+ ++AI+ GI G+ +L A L FY GV+ + TWN + F G
Sbjct: 97 AKKEGKIAILLGIEGAHALGDDLALLRTFYALGVRYL---GLTWNCNNLFAD------GC 147
Query: 285 YRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
+ GL G E ++ M IL +DLS
Sbjct: 148 --LERKRDGGLTRFG-KEVVREMNRLGIL-----------IDLS 177
Score = 29.1 bits (66), Expect = 6.6
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 65 DFAGMMEDIKLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRL 123
D ++ K+AI+ GI G+ +L A L FY GV+ + TWN + F
Sbjct: 93 DIERAKKEGKIAILLGIEGAHALGDDLALLRTFYALGVRYL---GLTWNCNNLFAD---- 145
Query: 124 NVGAYRYFDNKTNGLDFAG 142
G + GL G
Sbjct: 146 --GC--LERKRDGGLTRFG 160
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 34.1 bits (78), Expect = 0.25
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 506 LKSKILDKGSKKNWDHITNQKGMFCYTGLSA-SQGMSNRISSIREELKSKILDKGSKK 562
+S + S K T++ Y+ ++A S + +IS I EEL KI+ + S+K
Sbjct: 603 SESTTISGLSSKFPSSFTSKLQEQIYSSINAFSNELRRKISIINEELNKKIIKELSEK 660
>gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase. This
family of succinyldiaminopimelate transaminases (DapC)
includes the experimentally characterized enzyme from
Bordatella pertussis. The majority of genes in this
family are proximal to genes encoding components of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125).
Length = 393
Score = 33.5 bits (77), Expect = 0.28
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 283 GAYRYFDNKTNGLDFAGMMEDIKAMPE----RSILFLQTSSHNPTGVDLSEDQWRQL 335
GA YF N T F D A+PE R L S NPTG LS D ++L
Sbjct: 137 GAEPYFLNCTAENGFLP---DFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKL 190
>gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase;
Provisional.
Length = 380
Score = 33.1 bits (76), Expect = 0.35
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 33/125 (26%)
Query: 288 FDNKTNG---------LDFAGMMEDIKAM---PERSILFLQTSSHNPTGVDLSEDQWRQL 335
FD NG DF+ + I + +LFL TS +NP G +S+D ++
Sbjct: 142 FDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFL-TSPNNPDGSIISDDDLLKI 200
Query: 336 A-----VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY 390
VV+ D AY+ +F S + K+ L + ++FSK GL
Sbjct: 201 LELPILVVL---------DEAYI-----EF-STQESRMKWVKKYDNLIVLRTFSKRAGLA 245
Query: 391 GERVG 395
G RVG
Sbjct: 246 GLRVG 250
>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase. Members of this
family are the enzyme capreomycidine synthase, which
performs the second of two steps in the biosynthesis of
2S,3R-capreomycidine from arginine. Capreomycidine is an
unusual amino acid used by non-ribosomal peptide
synthases (NRPS) to make the tuberactinomycin class of
peptide antibiotic. The best characterized member is
VioD from the biosynthetic pathway for viomycin
[Cellular processes, Biosynthesis of natural products].
Length = 359
Score = 32.8 bits (75), Expect = 0.43
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 296 DFAGMMEDIKAM-PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG 354
F ++ ++A+ R+ + HNPTG ++ + +L + +D A+
Sbjct: 127 GFRPDLDALRALLTPRTRAVVVNFPHNPTGASVTPRELDELLERAARSGAVLLWDNAF-- 184
Query: 355 LTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
D DA L + ++ + SK GL G RVG
Sbjct: 185 ---ADLVHDAPPLPDPSALYDRVISFGTLSKAFGLPGLRVG 222
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 32.9 bits (75), Expect = 0.55
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---------PERSILFLQTS--SHNPTGV 325
+ RL +G +T+ D A + A+ PER L L TS S P GV
Sbjct: 94 EPRLLLGDDAVAAGRTDVEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGV 153
Query: 326 DLSEDQWRQLAV 337
LSE +Q A
Sbjct: 154 MLSERNLQQTAH 165
>gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase;
Provisional.
Length = 396
Score = 32.5 bits (75), Expect = 0.58
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 283 GAYRYFDNKTNGLDFAGMMEDIKAMPE----RSILFLQTSSHNPTGVDLSEDQWRQL 335
GA YF N +FA D A+P R+ L S NPTG L D W++L
Sbjct: 138 GAEPYFLNCDPANNFAP---DFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKL 191
>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated.
Length = 387
Score = 32.3 bits (74), Expect = 0.68
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 306 AMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFD 361
A+ R+ + S HNPTG L+ + +A + + L D Y L FD
Sbjct: 155 AVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLV---FD 207
>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
Length = 386
Score = 32.2 bits (74), Expect = 0.76
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 306 AMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAY 352
A+ R+ L + + HNP+G S R L ++ +Y D Y
Sbjct: 159 AISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVY 205
>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 31.9 bits (73), Expect = 0.91
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 293 NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
+G+D + E + + +++ + NPTGV +S ++ + L
Sbjct: 211 DGIDPEALEEALAQWKPK-AVYVTPTFQNPTGVTMSLERRKALL 253
>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
Length = 397
Score = 31.7 bits (73), Expect = 0.95
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 310 RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAY 352
++IL ++ NPTGV ++++ LA + K+ L+ D Y
Sbjct: 164 KAILI--SNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVY 204
>gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional.
Length = 405
Score = 31.3 bits (71), Expect = 1.5
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 290 NKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQ 341
+K GLD + E KA +FL ++ +NP GV S ++ Q+A + ++
Sbjct: 161 DKRAGLDLDQLEEAFKAGVR---VFLFSNPNNPAGVVYSAEEIAQIAALARR 209
>gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase.
Length = 534
Score = 31.4 bits (71), Expect = 1.6
Identities = 43/130 (33%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD------FDKDAFSLRYFAKEV 374
NPTG L+E+ R + KQ L D Y F K A S+ Y K++
Sbjct: 282 NPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDI 341
Query: 375 GQLCLAQSFSKNMGLYGE---RVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGAR 431
L QS SK G YGE R G V TSD E+I K+ SN I G
Sbjct: 342 -SLVSFQSVSK--GYYGECGKRGGYMEVTGFTSDVREQIY---KVASVNLCSN--ISGQI 393
Query: 432 IVTEILSDPK 441
+ + ++S PK
Sbjct: 394 LASLVMSPPK 403
>gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional.
Length = 403
Score = 31.2 bits (71), Expect = 1.7
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCL 379
HNPT + + + +L + K+ Y D+AY +T + + AK+V
Sbjct: 185 HNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESY 244
Query: 380 AQSFSKNMGLYGERVG 395
S S NM G RVG
Sbjct: 245 TLSKSYNMA--GWRVG 258
>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional.
Length = 389
Score = 30.8 bits (70), Expect = 1.8
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377
S +NPTGV E R + + + +Y D AY T FS
Sbjct: 168 SPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKH--FSPGSIPGSGNHT 225
Query: 378 CLAQSFSKNMGLYGERVGTFSV 399
S SK G R+G +
Sbjct: 226 ISLYSLSKAYGFASWRIGYMVI 247
>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or
valine-pyruvate) aminotransferase [Amino acid transport
and metabolism].
Length = 417
Score = 30.5 bits (69), Expect = 2.5
Identities = 56/254 (22%), Positives = 88/254 (34%), Gaps = 46/254 (18%)
Query: 163 PKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNL-DHEYANI-------GGDAKFCKL 214
P + LG G P +P + + + + + L + G A
Sbjct: 30 PGAIMLG-------GGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDA 82
Query: 215 AAQL---AYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPG-VKTVYFP-TPTWN 269
A++ YG + +A+ G S S + F R G K + P P +
Sbjct: 83 LAKMLRREYGWNI---TAQNIALTNG-SQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYI 138
Query: 270 GHVRFCTDSRLNVGAYRYFDNKTNGL-----DFAGM--MEDIKAMPERSILFLQTSSHNP 322
G+ + L V A + G DF + E A I + + NP
Sbjct: 139 GYADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLHIGESTGA-----ICVSRPT--NP 191
Query: 323 TGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS-LRYFAKEVGQLCLAQ 381
TG L++++ +L + +Q + D AY F FS E LC+
Sbjct: 192 TGNVLTDEELAKLDALARQHGIPLIIDNAY----GVPFPGIIFSDATPLWNENIILCM-- 245
Query: 382 SFSKNMGLYGERVG 395
S SK +GL G R G
Sbjct: 246 SLSK-LGLPGSRCG 258
>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional.
Length = 380
Score = 30.1 bits (68), Expect = 3.2
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 306 AMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAF 365
M E + L NP G +E++ ++ A + + + D Y DF ++
Sbjct: 153 NMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTY-----RDFAREHT 207
Query: 366 SLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+A E SFSK G+ G R+G
Sbjct: 208 LAAEYAPEHTVTSY--SFSKIFGMAGLRIG 235
>gnl|CDD|225230 COG2355, COG2355, Zn-dependent dipeptidase, microsomal dipeptidase
homolog [Amino acid transport and metabolism].
Length = 313
Score = 29.6 bits (67), Expect = 4.0
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRF 274
A K+ ++ V + G+ L LE F+ GV+++ TWN F
Sbjct: 89 ALKEGKIGAVLHMEGAEPLGDDLDKLELFHALGVRSL---GLTWNRDNLF 135
>gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase;
Validated.
Length = 367
Score = 29.3 bits (67), Expect = 5.0
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 26/106 (24%)
Query: 303 DIKAM-----PERSILFLQTSSHNPTGVDLSEDQWRQLA--------VVVKQRHLYPFFD 349
D+ AM P ++F+ + NPTG L ++ + VV+ D
Sbjct: 143 DLDAMLAAVTPRTRLVFIANPN-NPTGTYLPAEEVERFLAGVPPDVLVVL---------D 192
Query: 350 MAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
AY +D L + + + ++FSK GL G RVG
Sbjct: 193 EAYAEYVRRKDYEDGLEL---VAKFPNVVVTRTFSKAYGLAGLRVG 235
>gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase;
Validated.
Length = 361
Score = 29.5 bits (67), Expect = 5.0
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 312 ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF-DKDAFSLRYF 370
++FL + +NPTG + E+ R+ +++ F D AY+ +F + D L
Sbjct: 161 VIFL-CTPNNPTGNLIPEEDIRK---ILESTDALVFVDEAYV-----EFAEYDYTPL--- 208
Query: 371 AKEVGQLCLAQSFSKNMGLYGERVG 395
A E L + ++FSK GL G R+G
Sbjct: 209 ALEYDNLIIGRTFSKVFGLAGLRIG 233
>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase.
Length = 496
Score = 29.7 bits (66), Expect = 5.6
Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 15/111 (13%)
Query: 317 TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLG--LTSGDF--------DKDAFS 366
T+ NP G L +D L V +++++ D Y GDF D D
Sbjct: 206 TNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISE 265
Query: 367 LRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKIL 417
+ V + + S SK+MGL G RVG + R MS ++
Sbjct: 266 V-----NVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLV 311
>gnl|CDD|223962 COG1031, COG1031, Uncharacterized Fe-S oxidoreductase [Energy
production and conversion].
Length = 560
Score = 29.3 bits (66), Expect = 6.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 170 VGAYRGEDGKPYVLPSV 186
VG RG +G PY+LP +
Sbjct: 348 VGGGRGYNGLPYLLPGI 364
>gnl|CDD|218791 pfam05879, RHD3, Root hair defective 3 GTP-binding protein (RHD3).
This family consists of several eukaryotic root hair
defective 3 like GTP-binding proteins. It has been
speculated that the RHD3 protein is a member of a novel
class of GTP-binding proteins that is widespread in
eukaryotes and required for regulated cell enlargement.
The family also contains the homologous yeast synthetic
enhancement of YOP1 (SEY1) protein which is involved in
membrane trafficking.
Length = 743
Score = 29.3 bits (66), Expect = 6.9
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 24/94 (25%)
Query: 492 CKGMSNRISSIR-EELKSKI------------------LDKGSKKNWDHITNQKGMFCYT 532
K + + +R EELK L+K +K+ WD + F
Sbjct: 408 EKDIDAHSARLRKEELKELTNRYEKKLVSALSEPVELLLNKLNKETWDTVLKL---FKRE 464
Query: 533 GLSASQGMSNRISS--IREELKSKILDKGSKKNW 564
A ++R S + EE K+L +K+W
Sbjct: 465 VEDAVSRFTDRKSGFDLSEEENDKMLKNLKRKSW 498
>gnl|CDD|232867 TIGR00194, uvrC, excinuclease ABC, C subunit. This family consists
of the DNA repair enzyme UvrC, an ABC excinuclease
subunit which interacts with the UvrA/UvrB complex to
excise UV-damaged nucleotide segments [DNA metabolism,
DNA replication, recombination, and repair].
Length = 574
Score = 29.3 bits (66), Expect = 6.9
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 427 IHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKA 486
I +++ D L D E + + L + Y N I +V+ L D KL
Sbjct: 261 IRQGKLIGRDQFDFSLP-GTDLDELVETFLIQFYQQGYQNRLIPSEILVSLSLEDLKLLE 319
Query: 487 QWFEECKGMSNRISSIREELKSKILDKGSKKNWDHITNQKG 527
E +G + ++ K K+L + + KN + QK
Sbjct: 320 DLLSEQRGRKINVHQPKKGDKKKLL-ELAIKNAKYALKQKW 359
>gnl|CDD|227539 COG5214, POL12, DNA polymerase alpha-primase complex,
polymerase-associated subunit B [DNA replication,
recombination, and repair].
Length = 581
Score = 29.2 bits (65), Expect = 8.1
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 26/85 (30%)
Query: 338 VVKQRHLYPFF-------------DMAYLGLTS--GDFDKD----AFSLRYFAKEVGQLC 378
++ QR YP F D+ L L D L++F ++VG
Sbjct: 470 LLFQRTFYPVFPGGSLEKCNPSSLDVVSLSLPEFMSMTAPDIYIVPSKLKHFCRDVG--- 526
Query: 379 LAQSFSKNMGLY--GERVGTFSVLT 401
N GL G + +T
Sbjct: 527 --NVVVVNPGLQAKETNEGIAAHIT 549
>gnl|CDD|113558 pfam04792, LcrV, V antigen (LcrV) protein. Yersinia pestis, the
aetiologic agent of plague, secretes a set of
environmentally regulated, plasmid pCD1-encoded
virulence proteins termed Yops and V antigen (LcrV) by a
type III secretion mechanism. LcrV is a multifunctional
protein that has been shown to act at the level of
secretion control by binding the Ysc inner-gate protein
LcrG and to modulate the host immune response by
altering cytokine production. LcrV is also necessary for
full induction of low-calcium response (LCR) stimulon
virulence gene transcription. Family members are not
confined to Yersinia pestis.
Length = 326
Score = 28.5 bits (63), Expect = 8.9
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 392 ERVGTFSVLTPTSDETERIMSQLK---ILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
E+V ++ S E E +++ LK I I P+ A + + ++
Sbjct: 17 EKVRLAALAAHASAELEELLALLKDENIDIAHAGD--PLKDAEVFANRVITDDIELLKKI 74
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEIL-SDPKLKAQW 488
+ IL P +G + E L + + AQW
Sbjct: 75 LAYFLKADAILKAAHPDAPLGNGIERLKEFLEARRQPGAQW 115
>gnl|CDD|185297 PRK15399, PRK15399, lysine decarboxylase LdcC; Provisional.
Length = 713
Score = 28.9 bits (65), Expect = 9.1
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 11/45 (24%)
Query: 138 LDFAGMMEDIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYV 182
LDF M+ I Q GF D H GA R EDG V
Sbjct: 673 LDFLLMLCSIG---QHYPGFETDIH--------GAKRDEDGVYRV 706
>gnl|CDD|227469 COG5140, UFD1, Ubiquitin fusion-degradation protein
[Posttranslational modification, protein turnover,
chaperones].
Length = 331
Score = 28.8 bits (64), Expect = 9.4
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 134 KTNGLDFAGMMEDIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKE 188
K GL G ++ +P KQ +K D P K++L G G P VLP E
Sbjct: 240 KGLGLYLYGKVDKAEP-KQDIKDMKIDGEPAKLDLPEGQLFF--GFPMVLPKEDE 291
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,366,308
Number of extensions: 3024029
Number of successful extensions: 2700
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2664
Number of HSP's successfully gapped: 79
Length of query: 583
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 481
Effective length of database: 6,413,494
Effective search space: 3084890614
Effective search space used: 3084890614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.9 bits)