RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14428
(583 letters)
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET:
PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A*
1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A*
1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A*
3hlm_A* 3pdb_A*
Length = 401
Score = 523 bits (1350), Expect = 0.0
Identities = 179/382 (46%), Positives = 241/382 (63%), Gaps = 42/382 (10%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F +D + KKMNLGVGAYR ++GKPYVL V++AE I K +D EY I G A F + +A
Sbjct: 22 FKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA 81
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+LA GE+ AFK R VQGISG+GSLRVG FL+RF+ + VY P P+W H
Sbjct: 82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR 141
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
D+ L + AYRY+D KT LDF G MEDI +PE+SI+ L +HNPTGVD ++QW++LA
Sbjct: 142 DAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELA 201
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
VVK+R+L +FDMAY G SGD ++DA++LR+F ++ + L+QS++KNMGLYGER G
Sbjct: 202 SVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGA 261
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
F+V+ + +E +R+ SQL
Sbjct: 262 FTVICRDA------------------------------------------EEAKRVESQL 279
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
KILIR YSNPP++GARI + IL+ P+L+ +W E KGM++RI S+R +L S + +GS
Sbjct: 280 KILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSS 339
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
NW HIT+Q GMFC+TGL Q
Sbjct: 340 HNWQHITDQIGMFCFTGLKPEQ 361
Score = 106 bits (266), Expect = 7e-25
Identities = 39/76 (51%), Positives = 47/76 (61%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
VQGISG+GSLRVG FL+RF+ + VY P P+W H D+ L + AYRY+D K
Sbjct: 97 YVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPK 156
Query: 61 TNGLDFAGMMEDIKLA 76
T LDF G MEDI
Sbjct: 157 TCSLDFTGAMEDISKI 172
Score = 105 bits (265), Expect = 8e-25
Identities = 39/75 (52%), Positives = 48/75 (64%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
+ VQGISG+GSLRVG FL+RF+ + VY P P+W H D+ L + AYRY+D
Sbjct: 96 RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDP 155
Query: 134 KTNGLDFAGMMEDIK 148
KT LDF G MEDI
Sbjct: 156 KTCSLDFTGAMEDIS 170
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural
genomics, SEA structural genomics center for infectious
disease; HET: LLP; 2.30A {Trypanosoma brucei}
Length = 409
Score = 514 bits (1326), Expect = e-180
Identities = 139/382 (36%), Positives = 202/382 (52%), Gaps = 47/382 (12%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F DP +K+NL +G YR + +P+VL VK+A + +YA + G A F + A
Sbjct: 35 FRMDPAKRKVNLSIGVYRDDADQPFVLECVKQAT-----LGTNMDYAPVTGIASFVEEAQ 89
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+L +G A +D R+A Q + G+G+LR+G L RF +Y P + H
Sbjct: 90 KLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFA 149
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
+ + + Y Y+D T GL+ AGM+E + PE S++ + +HNPTGVD + D WRQ+
Sbjct: 150 KAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVC 209
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
V+K+R+ PF DMAY G +G D DAF R+ V L +AQSFSKN GLYG R G
Sbjct: 210 DVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGA 269
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
+ T ++ +E +R++SQL
Sbjct: 270 LHISTASA------------------------------------------EEAKRLVSQL 287
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
+LIR Y+NPP++GA +V+ IL DP+L A W +E K MS+RI+ +R+ L S++ GS
Sbjct: 288 ALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSV 347
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+W HI Q GM YTGL+ Q
Sbjct: 348 HDWSHIERQVGMMAYTGLTREQ 369
Score = 107 bits (269), Expect = 3e-25
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+A Q + G+G+LR+G L RF +Y P + H + + + Y Y+D
Sbjct: 105 IASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPA 164
Query: 61 TNGLDFAGMMEDIKLA 76
T GL+ AGM+E + A
Sbjct: 165 TKGLNLAGMLECLDKA 180
Score = 106 bits (268), Expect = 4e-25
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
++A Q + G+G+LR+G L RF +Y P + H + + + Y Y+D
Sbjct: 104 RIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDP 163
Query: 134 KTNGLDFAGMMEDIK 148
T GL+ AGM+E +
Sbjct: 164 ATKGLNLAGMLECLD 178
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET:
PLP; 2.80A {Plasmodium falciparum}
Length = 405
Score = 511 bits (1319), Expect = e-179
Identities = 93/386 (24%), Positives = 169/386 (43%), Gaps = 48/386 (12%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F +D +K+NL +G +DG ++ SV A++ + E + Y G F L
Sbjct: 23 FKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTENYKEKPYLLGNGTEDFSTLTQ 82
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
L +G + +D ++ +Q I G+G++ V FL+ +T+Y P + HV
Sbjct: 83 NLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV--ETLYVTNPPYINHVNMIE 140
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
N+ +FD +++ + D++ +P S + LQ S +NP V++ E + ++
Sbjct: 141 SRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEII 200
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
+V + FD+AY G + ++D +R F ++ + QSFSKNM LYGER G
Sbjct: 201 EIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGA 260
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
++ +E + + + L
Sbjct: 261 LHIVCKNQ------------------------------------------EEKKIVFNNL 278
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIR----EELKSKILD 512
++R FYS+P IH RI+ ++L++ LK W +E +S RI++ R +L++
Sbjct: 279 CFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKK 338
Query: 513 KGSKKNWDHITNQKGMFCYTGLSASQ 538
+W+ Q+G+F + L A
Sbjct: 339 YNLNYDWNVYKKQRGLFSFVPLLAKI 364
Score = 100 bits (251), Expect = 6e-23
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+ +Q I G+G++ V FL+ +T+Y P + HV N+ +FD
Sbjct: 98 ICTIQCIGGTGAIFVLLEFLKMLNV--ETLYVTNPPYINHVNMIESRGFNLKYINFFDYN 155
Query: 61 TNGLDFAGMMEDIKLA 76
+++ + D++
Sbjct: 156 LIDINYDLFLNDLRNI 171
Score = 99 bits (250), Expect = 7e-23
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
K+ +Q I G+G++ V FL+ +T+Y P + HV N+ +FD
Sbjct: 97 KICTIQCIGGTGAIFVLLEFLKMLNV--ETLYVTNPPYINHVNMIESRGFNLKYINFFDY 154
Query: 134 KTNGLDFAGMMEDIK 148
+++ + D++
Sbjct: 155 NLIDINYDLFLNDLR 169
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease; HET:
LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Length = 420
Score = 511 bits (1318), Expect = e-179
Identities = 135/382 (35%), Positives = 195/382 (51%), Gaps = 44/382 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
FN D P K+NLGVG Y EDGK +L +V++AE+ E L Y I G A +
Sbjct: 43 FNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQ 102
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+L G+D P R+ Q + G+G+L++G FL P V P+W H
Sbjct: 103 KLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPK-AKVAISDPSWENHRALFD 161
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
+ V AY Y+D KTNG++F GM+ + +I+ L HNPTGVDL++ QW Q+
Sbjct: 162 MAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVV 221
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
VVK R L PF D+AY G + DA ++R FA + ++ SFSK+ LYGERVG
Sbjct: 222 EVVKARRLVPFLDIAYQGFGES-IEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGA 280
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
S++T + DE R++SQL
Sbjct: 281 LSIITDSK------------------------------------------DEAARVLSQL 298
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
K +IR YSNPP HG IV +L+ P+L+A W +E M +RI ++R L ++ G +
Sbjct: 299 KRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIE 358
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+++ I Q+GMF Y+GL+++Q
Sbjct: 359 RDFSFINAQRGMFSYSGLTSAQ 380
Score = 101 bits (255), Expect = 2e-23
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+ Q + G+G+L++G FL P V P+W H + V AY Y+D K
Sbjct: 118 VVTAQALGGTGALKIGADFLRTLNPK-AKVAISDPSWENHRALFDMAGFEVVAYPYYDAK 176
Query: 61 TNGLDFAGMMEDIKLA 76
TNG++F GM+ +
Sbjct: 177 TNGVNFDGMLAALNGY 192
Score = 101 bits (255), Expect = 2e-23
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
++ Q + G+G+L++G FL P V P+W H + V AY Y+D
Sbjct: 117 RVVTAQALGGTGALKIGADFLRTLNPK-AKVAISDPSWENHRALFDMAGFEVVAYPYYDA 175
Query: 134 KTNGLDFAGMMEDIK 148
KTNG++F GM+ +
Sbjct: 176 KTNGVNFDGMLAALN 190
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase,
pyridoxal phosphate, internal ALD schiff base,
amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia
coli k-12} PDB: 3tat_A*
Length = 397
Score = 507 bits (1307), Expect = e-177
Identities = 131/383 (34%), Positives = 197/383 (51%), Gaps = 45/383 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIY-EKNLDHEYANIGGDAKFCKLA 215
F +DP K+NL +G Y EDG L +V EAE R+ + + Y + G +
Sbjct: 20 FKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAI 79
Query: 216 AQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC 275
A L +G D P K R+A +Q + GSG+L+VG FL+R++P V+ PTW HV
Sbjct: 80 APLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE-SGVWVSDPTWENHVAIF 138
Query: 276 TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335
+ V Y ++D TNG+ F ++ +K + SI+ L HNPTG DL+ DQW +
Sbjct: 139 AGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAV 198
Query: 336 AVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
++K R L PF D+AY G +G ++DA+++R A ++ SFSK LYGERVG
Sbjct: 199 IEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVG 257
Query: 396 TFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQ 455
SV+ + + R++ Q
Sbjct: 258 GLSVMCEDA------------------------------------------EAAGRVLGQ 275
Query: 456 LKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGS 515
LK +R YS+PP GA++V +L+D LKA W +E + M RI ++R+EL + +
Sbjct: 276 LKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMP 335
Query: 516 KKNWDHITNQKGMFCYTGLSASQ 538
++N+D++ NQ+GMF YTGLSA+Q
Sbjct: 336 ERNFDYLLNQRGMFSYTGLSAAQ 358
Score = 102 bits (257), Expect = 9e-24
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+A +Q + GSG+L+VG FL+R++P V+ PTW HV + V Y ++D
Sbjct: 96 VATIQTLGGSGALKVGADFLKRYFPE-SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEA 154
Query: 61 TNGLDFAGMMEDIKLA 76
TNG+ F ++ +K
Sbjct: 155 TNGVRFNDLLATLKTL 170
Score = 102 bits (256), Expect = 1e-23
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
++A +Q + GSG+L+VG FL+R++P V+ PTW HV + V Y ++D
Sbjct: 95 RVATIQTLGGSGALKVGADFLKRYFPE-SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDE 153
Query: 134 KTNGLDFAGMMEDIK 148
TNG+ F ++ +K
Sbjct: 154 ATNGVRFNDLLATLK 168
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces
cerevisiae} SCOP: c.67.1.1
Length = 412
Score = 506 bits (1306), Expect = e-177
Identities = 132/386 (34%), Positives = 205/386 (53%), Gaps = 43/386 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIY-EKNLDHEYANIGGDAKFCKLA 215
+ +D K++LG+GAYR ++GKP+VLPSVK AE+ I+ + + +HEY I G A
Sbjct: 23 YGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNA 82
Query: 216 AQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC 275
A++ +G A +++R+ VQ +SG+G+L + F +F+P K VY PTW H+
Sbjct: 83 AKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPD-KLVYLSKPTWANHMAIF 141
Query: 276 TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335
+ L Y Y+ N+T LD G + I+ PE SI L + +HNPTG+D + +QW Q+
Sbjct: 142 ENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQI 201
Query: 336 AVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ---LCLAQSFSKNMGLYGE 392
+ ++ FD AY G +GD DKDA+++R +++ + + QSF+KN G+YGE
Sbjct: 202 VDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE 261
Query: 393 RVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERI 452
RVG F + + + +
Sbjct: 262 RVGCFHLALTKQAQNK--------------------------------------TIKPAV 283
Query: 453 MSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILD 512
SQL +IR SNPP +GA+IV ++L P+L QW ++ MS+RI+ +R L+ ++
Sbjct: 284 TSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVK 343
Query: 513 KGSKKNWDHITNQKGMFCYTGLSASQ 538
G+ NWDHI NQ GMF +TGL+
Sbjct: 344 LGTPGNWDHIVNQCGMFSFTGLTPQM 369
Score = 100 bits (251), Expect = 6e-23
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+ VQ +SG+G+L + F +F+P K VY PTW H+ + L Y Y+ N+
Sbjct: 99 VISVQSLSGTGALHISAKFFSKFFPD-KLVYLSKPTWANHMAIFENQGLKTATYPYWANE 157
Query: 61 TNGLDFAGMMEDIKLA 76
T LD G + I+ A
Sbjct: 158 TKSLDLNGFLNAIQKA 173
Score = 100 bits (251), Expect = 7e-23
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
++ VQ +SG+G+L + F +F+P K VY PTW H+ + L Y Y+ N
Sbjct: 98 RVISVQSLSGTGALHISAKFFSKFFPD-KLVYLSKPTWANHMAIFENQGLKTATYPYWAN 156
Query: 134 KTNGLDFAGMMEDIK 148
+T LD G + I+
Sbjct: 157 ETKSLDLNGFLNAIQ 171
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A
{Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A*
1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A*
2ay7_A* 2ay8_A* 2ay9_A*
Length = 394
Score = 502 bits (1296), Expect = e-176
Identities = 109/382 (28%), Positives = 169/382 (44%), Gaps = 47/382 (12%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F DP K++LGVG Y+ G ++ +V AE+R+ E YA + G+ +F K
Sbjct: 20 FRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMG 79
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+L G+ K A + + G+G+LR P V+ PTW HV
Sbjct: 80 ELILGD---GLKSETTATLATVGGTGALRQALELARMANPD-LRVFVSDPTWPNHVSIMN 135
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
L V YRYFD +T G+DF GM D+ A + ++ L HNPTG +L+ DQW ++A
Sbjct: 136 FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIA 195
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
++++ P D+AY G G ++DA R A + ++ +A S SKN G+Y ER G
Sbjct: 196 SILEKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGC 254
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
L + E +
Sbjct: 255 LLALCADA------------------------------------------ATRELAQGAM 272
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
L R YS PP HGA+IV+ +L+ P+L+A W E + + + + +RE+L ++ D
Sbjct: 273 AFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGS 332
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+ + +GMF G + Q
Sbjct: 333 DRFGFVAEHRGMFSRLGATPEQ 354
Score = 102 bits (256), Expect = 1e-23
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 57 FDNKTNGLDFAGMMEDIKLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR 116
F L ++ A + + G+G+LR P V+ PTW HV
Sbjct: 74 FQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPD-LRVFVSDPTWPNHVS 132
Query: 117 FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIK 148
L V YRYFD +T G+DF GM D+
Sbjct: 133 IMNFMGLPVQTYRYFDAETRGVDFEGMKADLA 164
Score = 101 bits (254), Expect = 2e-23
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
A + + G+G+LR P V+ PTW HV L V YRYFD +
Sbjct: 92 TATLATVGGTGALRQALELARMANPD-LRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAE 150
Query: 61 TNGLDFAGMMEDIKLA 76
T G+DF GM D+ A
Sbjct: 151 TRGVDFEGMKADLAAA 166
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand
2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa}
SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Length = 412
Score = 503 bits (1298), Expect = e-176
Identities = 157/388 (40%), Positives = 227/388 (58%), Gaps = 48/388 (12%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEK-NLDHEYANIGGDAKFCKLA 215
F +DP P+K+NLGVGAYR +D +P+VLP V++ E+RI +L+HEY I G A+F A
Sbjct: 24 FREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83
Query: 216 AQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV----KTVYFPTPTWNGH 271
++LA G+D PA ++ R+ VQ + G+G+LR+G FL R+Y G VY +PTW H
Sbjct: 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENH 143
Query: 272 VRFCTDSRL-NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSED 330
T + ++ +YRY+D + GLD G + D++ PE SI L +HNPTG D + +
Sbjct: 144 NGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPE 203
Query: 331 QWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY 390
QW+Q+A V+K+R L+PFFD AY G SG+ +KDA+++RYF E +L AQSFSKN GLY
Sbjct: 204 QWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLY 263
Query: 391 GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETE 450
ERVG +V+ D
Sbjct: 264 NERVGNLTVVAKEP------------------------------------------DSIL 281
Query: 451 RIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKI 510
R++SQ++ ++R +SNPP GARIV LSDP+L +W K M++RI S+R EL++++
Sbjct: 282 RVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARL 341
Query: 511 LDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ W+HIT+Q GMF +TGL+ Q
Sbjct: 342 EALKTPGTWNHITDQIGMFSFTGLNPKQ 369
Score = 93.1 bits (232), Expect = 2e-20
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 2 AIVQGISGSGSLRVGTAFLERFYPGV----KTVYFPTPTWNGHVRFCTDSRL-NVGAYRY 56
VQ + G+G+LR+G FL R+Y G VY +PTW H T + ++ +YRY
Sbjct: 101 GGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRY 160
Query: 57 FDNKTNGLDFAGMMEDIKLA 76
+D + GLD G + D++ A
Sbjct: 161 WDTEKRGLDLQGFLSDLENA 180
Score = 92.7 bits (231), Expect = 2e-20
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGV----KTVYFPTPTWNGHVRFCTDSRL-NVGAY 128
++ VQ + G+G+LR+G FL R+Y G VY +PTW H T + ++ +Y
Sbjct: 99 RVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSY 158
Query: 129 RYFDNKTNGLDFAGMMEDIK 148
RY+D + GLD G + D++
Sbjct: 159 RYWDTEKRGLDLQGFLSDLE 178
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta,
PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia
coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A*
2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A*
1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A*
1asn_A* 1c9c_A* 1cq6_A* ...
Length = 396
Score = 502 bits (1296), Expect = e-176
Identities = 121/382 (31%), Positives = 180/382 (47%), Gaps = 44/382 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F D P K+NLG+G Y+ E GK VL SVK+AE+ + E Y I G +F +
Sbjct: 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQ 79
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+L +G+ D R Q G+G+LRV FL + K V+ P+W H
Sbjct: 80 ELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV-KRVWVSNPSWPNHKSVFN 138
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
+ L V Y Y+D + + LDF ++ + ++ HNPTG+D + +QW+ LA
Sbjct: 139 SAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLA 198
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
+ ++ P FD AY G G ++DA LR FA +L +A S+S N GLY ERVG
Sbjct: 199 QLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGA 257
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
+++ S + +R SQ+
Sbjct: 258 CTLVAADS------------------------------------------ETVDRAFSQM 275
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
K IR YSNPP HGA +V ILS+ L+A W +E M RI +R+ + + +KG+
Sbjct: 276 KAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGAN 335
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
+++ I Q GMF ++GL+ Q
Sbjct: 336 RDFSFIIKQNGMFSFSGLTKEQ 357
Score = 102 bits (256), Expect = 1e-23
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
Q G+G+LRV FL + K V+ P+W H + L V Y Y+D +
Sbjct: 95 ARTAQTPGGTGALRVAADFLAKNTSV-KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAE 153
Query: 61 TNGLDFAGMMEDIKLA 76
+ LDF ++ + A
Sbjct: 154 NHTLDFDALINSLNEA 169
Score = 102 bits (256), Expect = 1e-23
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 133
+ Q G+G+LRV FL + K V+ P+W H + L V Y Y+D
Sbjct: 94 RARTAQTPGGTGALRVAADFLAKNTSV-KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDA 152
Query: 134 KTNGLDFAGMMEDIK 148
+ + LDF ++ +
Sbjct: 153 ENHTLDFDALINSLN 167
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural
genomics, seattle structural genomi for infectious
disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Length = 448
Score = 495 bits (1277), Expect = e-172
Identities = 132/394 (33%), Positives = 200/394 (50%), Gaps = 47/394 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYE--KNLDHEYANIGGDAKFCKL 214
+N D +PKK+NLGVGAYR E GKP++LP+VKEAE I + EY + G F +
Sbjct: 43 YNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEA 102
Query: 215 AAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV-- 272
A L +G+D A ++ R+A Q +SG+GSL +G FL + P Y P+ TW H
Sbjct: 103 AQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPK-AEFYMPSTTWPNHYGI 161
Query: 273 --RFCTDSRLNVGAYRYFDNKTN-GLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSE 329
+ ++ Y Y +DF+ +DI++ PE+SI +HNP+G+D +E
Sbjct: 162 YDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTE 221
Query: 330 DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGL 389
QW++L ++K++ FFD AY G +G F+ DAF++R F ++ +AQSFSKN GL
Sbjct: 222 AQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGL 281
Query: 390 YGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDET 449
YGER+G V+ + + ++ +
Sbjct: 282 YGERIGCLHVVHAGVEGS----------------------------------VEKNKALS 307
Query: 450 ERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSK 509
++S + + IR +S IHGA IV I+ D +L +++ K MS RI +R L +
Sbjct: 308 AAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHAS 367
Query: 510 ILDK-----GSKKNWDHITNQKGMFCYTGLSASQ 538
+ + GSK WDHI GMF +TGL+
Sbjct: 368 LAKRKTPGPGSKGTWDHILTAIGMFTFTGLTPEH 401
Score = 90.5 bits (225), Expect = 2e-19
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV----RFCTDSRLNVGAYRY 56
+A Q +SG+GSL +G FL + P Y P+ TW H + ++ Y Y
Sbjct: 120 IASCQSLSGTGSLHIGFEFLHLWMPK-AEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTY 178
Query: 57 FDNKTN-GLDFAGMMEDIKLA 76
+DF+ +DI+ A
Sbjct: 179 LRKDGELEIDFSNTKKDIQSA 199
Score = 90.1 bits (224), Expect = 2e-19
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 74 KLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHV----RFCTDSRLNVGAYR 129
++A Q +SG+GSL +G FL + P Y P+ TW H + ++ Y
Sbjct: 119 RIASCQSLSGTGSLHIGFEFLHLWMPK-AEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYT 177
Query: 130 YFDNKTN-GLDFAGMMEDIK 148
Y +DF+ +DI+
Sbjct: 178 YLRKDGELEIDFSNTKKDIQ 197
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
structure, cytosol; HET: AKG GOL; 2.20A {Veillonella
parvula}
Length = 418
Score = 445 bits (1148), Expect = e-153
Identities = 66/398 (16%), Positives = 129/398 (32%), Gaps = 64/398 (16%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
++ +N +GA E+G L +VKE + + YA I G F A
Sbjct: 32 AKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSL-SDSEHVGYAPIAGIPDFLCAAE 90
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+ +G P + + + G+G + + + V W + C+
Sbjct: 91 KECFGNFRP---EGHIRSIATAGGTGGIHH---LIHNYTEPGDEVLTADWYWGAYRVICS 144
Query: 277 DSRLNVGAYRYFDNKT--NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQ 334
D+ + Y FD N F + ++ A ++ T +NPTG + + W
Sbjct: 145 DTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDS 204
Query: 335 LAVVVK------QRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL--CLAQSFSKN 386
+ +K + ++ D+AYL SG+ D+ F+ ++ C+ S SK
Sbjct: 205 ILNFLKDLVAIGRNNVIIGIDVAYLDY-SGEKDEVRAFFNKFSHLPKEILTCVCYSLSKG 263
Query: 387 MGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQC 446
+YG+RVG ++
Sbjct: 264 FTMYGQRVGAMIGISDDE------------------------------------------ 281
Query: 447 DETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREEL 506
+ + K R +SN R + I++DP ++ E I +
Sbjct: 282 EIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIF 341
Query: 507 KSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNRI 544
K + ++ + + G F ++ + +
Sbjct: 342 K----QEAAQVGLPMLPYRGGFFITIPTDSANAICEEL 375
Score = 86.2 bits (214), Expect = 3e-18
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 57 FDNKTNGLDFAGMMEDIKLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR 116
F F + + + G+G + + + V W +
Sbjct: 85 FLCAAEKECFGNFRPEGHIRSIATAGGTGGIHH---LIHNYTEPGDEVLTADWYWGAYRV 141
Query: 117 FCTDSRLNVGAYRYFDNKT--NGLDFAGMMEDIK 148
C+D+ + Y FD N F + ++
Sbjct: 142 ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELA 175
Score = 85.8 bits (213), Expect = 4e-18
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
+ + G+G + + + V W + C+D+ + Y FD
Sbjct: 103 IRSIATAGGTGGIHH---LIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH 159
Query: 61 T--NGLDFAGMMEDIKLA 76
N F + ++
Sbjct: 160 NNFNHEAFQNRVNELAAK 177
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center
for structural genomics, P 5'-phosphate binding; HET:
PLP; 2.86A {Anaerococcus prevotii}
Length = 413
Score = 429 bits (1106), Expect = e-147
Identities = 67/405 (16%), Positives = 133/405 (32%), Gaps = 70/405 (17%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
K +N +G + GK LPSV + + +++ YA I G+ + K+
Sbjct: 31 IEKYGREAVINAALGTLLDDKGKIIALPSVYDRLDEM-DRSHIASYAPIEGEKDYRKIVI 89
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+G P + ++ + G+G++R G + W + + C
Sbjct: 90 DTLFGPYKP---EGYISAIATPGGTGAIRSA--IFSYLDEG-DPLICHDYYWAPYRKICE 143
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAM---PERSILFLQTSSHNPTGVDLSEDQWR 333
+ N + +F + E I +R + + +NPTG LS+++W
Sbjct: 144 EFGRNFKTFEFFT-DDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWD 202
Query: 334 QLAVVVKQ------RHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVG--QLCLAQSFSK 385
++ +K+ + + D+AYL +GD D+ F+ + +A S SK
Sbjct: 203 EVITFLKEKAEDKDKKITLIVDVAYLEF-AGDGDQQRKFFEKFSNLPRNLFVVVAFSMSK 261
Query: 386 NMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQ 445
+ YG R G ++ + + E + L R +SN
Sbjct: 262 SHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGT------------------- 302
Query: 446 CDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREE 505
H A+ + L + K + +E + N + S +
Sbjct: 303 ------------------------HAAQNILIELERAENKKIYEQELVDLRNMLKSRADV 338
Query: 506 LKSKILDKGSKKNWDHITNQKGMFCYTGLSASQGMSNRISSIREE 550
+ I G F + + + + +E
Sbjct: 339 FV----TAAKENKLTMIPYFGGFFTFIPTDKAFDIVKD---LEKE 376
Score = 81.2 bits (201), Expect = 1e-16
Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 57 FDNKTNGLDFAGMMEDIKLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVR 116
+ F + ++ + G+G++R G + W + +
Sbjct: 84 YRKIVIDTLFGPYKPEGYISAIATPGGTGAIRSA--IFSYLDEG-DPLICHDYYWAPYRK 140
Query: 117 FCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKPLKQ 152
C + N + +F + E I +
Sbjct: 141 ICEEFGRNFKTFEFFT-DDFAFNIDVYKEAIDEGIR 175
Score = 79.6 bits (197), Expect = 4e-16
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 60
++ + G+G++R G + W + + C + N + +F
Sbjct: 102 ISAIATPGGTGAIRSA--IFSYLDEG-DPLICHDYYWAPYRKICEEFGRNFKTFEFFT-D 157
Query: 61 TNGLDFAGMMEDIKLA 76
+ E I
Sbjct: 158 DFAFNIDVYKEAIDEG 173
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 331 bits (851), Expect = e-108
Identities = 54/390 (13%), Positives = 109/390 (27%), Gaps = 59/390 (15%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
+ + N +G +DGK + S+ + + YA G + L
Sbjct: 41 QSAEAKSTTYNATIGMATNKDGKMF-ASSLDAMFNDL-TPDEIFPYAPPQGIEELRDLWQ 98
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
Q ++ DN + + + L + T+ P W +
Sbjct: 99 QKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVN--QD-DTILLPEHNWGNYKLVFN 155
Query: 277 DSR-LNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335
N+ Y FD ++E +++ + ++ + +NPTG + + +
Sbjct: 156 TRNGANLQTYPIFDK-DGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTI 214
Query: 336 AVVVKQ-----RHLYPFFDMAYLGLTSGDFDKDAF--SLRYFAKEVGQLCLAQSFSKNMG 388
+K + D AY GL D + +L +K
Sbjct: 215 VEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFF 274
Query: 389 LYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDE 448
+G RVG + T E + +++K LIR S+ P+ V +L +
Sbjct: 275 AWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNN-------- 326
Query: 449 TERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKS 508
+ + + + + R +E +
Sbjct: 327 ---------------------------------KQFDKEIEQNIQTLKERYEVTKEVVY- 352
Query: 509 KILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+W G F +
Sbjct: 353 ---ADQYHSHWQAYDFNSGYFMAIKVHDVD 379
Score = 64.7 bits (158), Expect = 3e-11
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 5/79 (6%)
Query: 76 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSR-LNVGAYRYFDNK 134
+ + + L + T+ P W + N+ Y FD
Sbjct: 115 RPIVTNALTHGLSLVGDLFVN--QD-DTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK- 170
Query: 135 TNGLDFAGMMEDIKPLKQQ 153
++E ++ +
Sbjct: 171 DGHYTTDSLVEALQSYNKD 189
Score = 62.0 bits (151), Expect = 2e-10
Identities = 9/74 (12%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 2 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSR-LNVGAYRYFDNK 60
+ + + L + T+ P W + N+ Y FD
Sbjct: 115 RPIVTNALTHGLSLVGDLFVN--QD-DTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK- 170
Query: 61 TNGLDFAGMMEDIK 74
++E ++
Sbjct: 171 DGHYTTDSLVEALQ 184
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 49.5 bits (119), Expect = 1e-06
Identities = 15/103 (14%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 294 GLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL 353
+D+ + I + + + + + +NP G ++++++ + + +++ D A++
Sbjct: 132 CIDYEDI---ISKIDDVDSVII-GNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFI 187
Query: 354 GLTSGDF-DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+F + S K L + ++ +K + G R G
Sbjct: 188 -----EFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFG 225
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine
biosynthesis, pyridoxal PH montreal-kingston bacterial
structural genomics initiative; HET: PMP; 1.50A
{Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A*
1gex_A* 1gey_A* 1iji_A*
Length = 356
Score = 47.2 bits (113), Expect = 7e-06
Identities = 48/224 (21%), Positives = 80/224 (35%), Gaps = 43/224 (19%)
Query: 249 AFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTN-GLDFAGMMEDIKAM 307
AF E PG + + PT+ G R N LD G+ +
Sbjct: 94 AFCE---PGKDAILYCPPTY-GMYSVSA--ETIGVECRTVPTLDNWQLDLQGI---SDKL 144
Query: 308 PERSILFLQTSSHNPTGVDLSEDQWRQLA--------VVVKQRHLYPFFDMAYLGLTSGD 359
++++ S +NPTG ++ +R L VV D AY +
Sbjct: 145 DGVKVVYV-CSPNNPTGQLINPQDFRTLLELTRGKAIVVA---------DEAY-----IE 189
Query: 360 FDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIR 419
F A SL + E L + ++ SK L G R G F++ +++ L +
Sbjct: 190 FCPQA-SLAGWLAEYPHLAILRTLSKAFALAGLRCG-FTLANE------EVINLLM-KVI 240
Query: 420 GFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGF 463
Y A I + LS + A + +I+++ + LI
Sbjct: 241 APY-PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAAL 283
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 46.8 bits (112), Expect = 1e-05
Identities = 35/144 (24%), Positives = 48/144 (33%), Gaps = 18/144 (12%)
Query: 255 YPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFD-NKTNGLDFAGMMEDIKAMPERSIL 313
YP Y + G G Y NG D+ + I+
Sbjct: 152 YP----AYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENG-----FFPDLSTVGRTDII 202
Query: 314 FLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF--A 371
F S +NPTG + +Q QL K+ +D AY D + S+ A
Sbjct: 203 FF-CSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYM---SDDNPRSIFEIPGA 258
Query: 372 KEVGQLCLAQSFSKNMGLYGERVG 395
+EV SFS G G R+G
Sbjct: 259 EEVA--METASFSNYAGFTGVRLG 280
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 46.8 bits (112), Expect = 1e-05
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 294 GLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA------VVVKQRHLYPF 347
+D +E+I+A + I+F+ T+ +NPTG S D ++ V+V
Sbjct: 150 RIDMDVALEEIRA-KQPDIVFV-TTPNNPTGDVTSLDDVERIINVAPGIVIV-------- 199
Query: 348 FDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
D AY +F + K +L ++++ SK G R+G
Sbjct: 200 -DEAY-----AEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLG 241
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent
decarboxylase cobalamin, lyase; 1.46A {Salmonella
enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Length = 364
Score = 46.4 bits (111), Expect = 2e-05
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 304 IKAMPER-SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362
++A+ LFL + +NPTG+ + +A K ++ D A++ DF
Sbjct: 140 LEALTPDLDCLFL-CTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFI-----DFIP 193
Query: 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
K+ + + +S +K + G R+G
Sbjct: 194 HETGFIPALKDNPHIWVLRSLTKFYAIPGLRLG 226
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 45.5 bits (108), Expect = 3e-05
Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 23/171 (13%)
Query: 294 GLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYL 353
+DF + R + NPTG L++++ LA + K+ + D AY
Sbjct: 190 RVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYG 249
Query: 354 GLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQ 413
+ L S SK +GL G R G ++ +++
Sbjct: 250 MPF---PNIIYSDAHLNWDN--NTILCFSLSK-IGLPGMRTGI--IVAD-----AKVIEA 296
Query: 414 LKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQLKILIRGFY 464
+ + P GA I T ++++ ++K D I+ FY
Sbjct: 297 VSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNE----------IKPFY 337
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 5e-05
Identities = 78/577 (13%), Positives = 153/577 (26%), Gaps = 212/577 (36%)
Query: 25 PGVKTVYFPT---PTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKLAIVQGI 81
P + T + +N + F ++ NV + + L + K ++ G+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGV 158
Query: 82 SGSG--SLRVGTA----FLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKT 135
GSG + + + + F W LN+ N
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKI----F----W-----------LNLKNC----NSP 195
Query: 136 NGLDFAGMMEDIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYE 195
+ +E ++ L Q+ DP N + + + S++ RR+ +
Sbjct: 196 ETV-----LEMLQKLLYQI-----DP-----NWTSRSDHSSNI-KLRIHSIQAELRRLLK 239
Query: 196 KNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFY 255
Y N C L L N VQ + + F
Sbjct: 240 ---SKPYEN-------CLLV--L----------LN----VQ------NAKA----WNAFN 263
Query: 256 PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYF--DNKTNGLD-------FAGMME-DIK 305
K + T T V TD L+ + D+ + L ++ +
Sbjct: 264 LSCKILL--T-TRFKQV---TDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 306 AMPERSILFLQTSSHNPT-----GVDLSE-----DQWRQLAVVVKQRHLYPFFDMAYLGL 355
+P + + NP + + D W+ V L + + L
Sbjct: 317 DLPR------EVLTTNPRRLSIIAESIRDGLATWDNWKH----VNCDKLTTIIESSLNVL 366
Query: 356 TSGDFDKDAF-SLRYFAKEV----GQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERI 410
++ + F L F L L ++ + + +
Sbjct: 367 EPAEY-RKMFDRLSVFPPSAHIPTILLSL---------IWFD---------VIKSDVMVV 407
Query: 411 MSQL--KILI-----RGFYSNPPIHGARIVTEILSDPKLKAQCDET----ERIMSQLKIL 459
+++L L+ S I I + LK + + I+ I
Sbjct: 408 VNKLHKYSLVEKQPKESTIS---IPS------IYLE--LKVKLENEYALHRSIVDHYNIP 456
Query: 460 IRGFYSNPPIHGARIVTEILSDPKLKAQWFE------ECKGMSNRISSIREE------LK 507
+ F S+ L P L ++ + R++ R L+
Sbjct: 457 -KTFDSDD-----------LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 508 SKILDKGSKKNW---------------DHITNQKGMF 529
KI + N +I + +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Score = 44.5 bits (104), Expect = 9e-05
Identities = 69/446 (15%), Positives = 135/446 (30%), Gaps = 137/446 (30%)
Query: 126 GAYRYFDNKTNGLDFAGMMEDIKPLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPS 185
G R F + K ++ ++ F ++ + + E +P
Sbjct: 63 GTLRLFW----------TLLS-KQ-EEMVQKFVEEVLRINYKFLMSPIKTEQRQP----- 105
Query: 186 VKEAERRIYEKNLDHEYANIGGDAKFCK---------LAAQLAYGEDFPAFKDNRLAIVQ 236
R+Y + D Y + F K L + A E + + ++
Sbjct: 106 --SMMTRMYIEQRDRLY---NDNQVFAKYNVSRLQPYLKLRQALLEL----RPAKNVLID 156
Query: 237 GISGSG--SLRVGTA----FLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 290
G+ GSG + + + + F W LN+ N
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKI----F----W-----------LNLKNC----N 193
Query: 291 KTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDM 350
+ +E ++ + + + S + + + L + + + Y
Sbjct: 194 SPETV-----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE---N 245
Query: 351 AYLGLTSGD--FDK---DAFSLRYFAKEVGQLC--LAQSFSKNM--GLYGERVGTFSV-- 399
L L + +AF+L C L + K + L S+
Sbjct: 246 CLLVL---LNVQNAKAWNAFNLS---------CKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 400 ----LTPTSDETERIMSQLKILIRGFYSNP-------PIHGARIVTEILSDPK------L 442
LTP DE + ++ K L P P + I+ E + D
Sbjct: 294 HSMTLTP--DEVKSLLL--KYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGLATWDNWK 348
Query: 443 KAQCDETERIMSQ-LKIL----IRGFYSN----PPIHGARIVTEILSDPKLKAQWFEECK 493
CD+ I+ L +L R + PP A I T +LS + WF+
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP--SAHIPTILLS--LI---WFDV-- 399
Query: 494 GMSNRISSIREELKSK-ILDKGSKKN 518
+ + + + +L +++K K++
Sbjct: 400 -IKSDVMVVVNKLHKYSLVEKQPKES 424
Score = 37.5 bits (86), Expect = 0.012
Identities = 71/538 (13%), Positives = 130/538 (24%), Gaps = 187/538 (34%)
Query: 3 IVQGISGSG--SLRVGTA----FLERFYPGVKTVYFPTPTW-N-GHVRFCTDSRLNVGAY 54
++ G+ GSG + + + + F W N + ++ L +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI----F----WLNLKNCN-SPETVLEMLQK 204
Query: 55 RYFDNKTNGLDFAGMMEDIKLAIVQGISGSGSLRVGTAFLERFYP-------GVKTVYFP 107
+ N + +IKL I S + + Y V
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRI-----HSIQAELRRLLKSKPYENCLLVLLNV------ 253
Query: 108 TPTWNGHVRFCTDSRLNVGAYRYFDNK------------TNGLDFAGMMEDIKPLKQQLK 155
N + F+ T+ L A L
Sbjct: 254 ---QNAKA------------WNAFNLSCKILLTTRFKQVTDFLSAATTTH--ISLDHHSM 296
Query: 156 GFNKDPH----PKKMNLGVGAYRGE--DGKPYVLPSVKEAERRIYEKNLDHEYANIGGDA 209
D K ++ E P L S+ R D+ + ++ D
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDN-WKHVNCDK 354
Query: 210 KFCKLAA---QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTP 266
+ + L E F L++ F P PT
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDR--LSV-------------------FPPSAH---IPTI 390
Query: 267 T----WNG-------------HVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPE 309
W H + + L+ +E+ A+
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVKLENEYAL-H 446
Query: 310 RSIL----FLQTSSHNPTGVDLSEDQWRQ-----LAVVVKQRHL--------YPFFDMAY 352
RSI+ +T + DL Q + HL F M +
Sbjct: 447 RSIVDHYNIPKTFDSD----DLIPPYLDQYFYSHIG-----HHLKNIEHPERMTLFRMVF 497
Query: 353 LGLTSGDFDKDAF---SLRYFAKEVGQLCLAQSFSKN----MGLYGERVGTFSVLTPTSD 405
L DF F +R+ A N + Y +
Sbjct: 498 L-----DFR---FLEQKIRH----DSTAWNASGSILNTLQQLKFYKPYI------CDNDP 539
Query: 406 ETERIMSQLK--------ILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQ 455
+ ER+++ + LI Y++ ++ L +A +E + + +
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTD-------LLRIALMAED-EAIFEEAHKQVQR 589
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate
aminotrans structural genomics, protein structure
initiative; 1.61A {Geobacter metallireducens gs-15}
Length = 360
Score = 42.5 bits (101), Expect = 3e-04
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 27/107 (25%)
Query: 296 DFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA------VVVKQRHLYPFFD 349
DF + + FL T+ + P G + +LA +V+ D
Sbjct: 138 DFRIAGFPERYEG--KVFFL-TTPNAPLGPSFPLEYIDELARRCAGMLVL---------D 185
Query: 350 MAYLGLTSGDF-DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
Y +F + +A L + + + ++ SK+ L G R+G
Sbjct: 186 ETY-----AEFAESNALEL---VRRHENVVVTRTLSKSYSLAGMRIG 224
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 417
Score = 41.4 bits (97), Expect = 6e-04
Identities = 13/89 (14%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGA 284
+ + AIV + + L + L+++ GV+ ++ G+ + DS +
Sbjct: 125 LAMEGKFAIVMSMLNAYPLGDDLSQLDKWAARGVRMF---GFSYVGNNDWA-DSSRPLPF 180
Query: 285 YRYFDNKTNGLDFAGMMEDIKAMPERSIL 313
+ + GL G + ++ + + ++
Sbjct: 181 FNDSPDALGGLSPLG-KQAVERLNDLGVI 208
Score = 35.6 bits (82), Expect = 0.045
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 13/128 (10%)
Query: 23 FYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDI-------KL 75
+ G + PTP + R + R + + N + A ED K
Sbjct: 73 MWNGPNAPHKPTPGFVDEARHQQEIRYKI-LTGMVRDFPNQVGIAYSPEDFRRLAMEGKF 131
Query: 76 AIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNK 134
AIV + + L + L+++ GV+ ++ G+ + DS + + +
Sbjct: 132 AIVMSMLNAYPLGDDLSQLDKWAARGVRMF---GFSYVGNNDWA-DSSRPLPFFNDSPDA 187
Query: 135 TNGLDFAG 142
GL G
Sbjct: 188 LGGLSPLG 195
Score = 32.9 bits (75), Expect = 0.27
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 59
AIV + + L + L+++ GV+ ++ G+ + DS + + +
Sbjct: 131 FAIVMSMLNAYPLGDDLSQLDKWAARGVRMF---GFSYVGNNDWA-DSSRPLPFFNDSPD 186
Query: 60 KTNGLDFAG 68
GL G
Sbjct: 187 ALGGLSPLG 195
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 41.4 bits (98), Expect = 7e-04
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF--AKEVGQL 377
+NPTG + + + ++ L+ D Y+ ++ +A S AKE
Sbjct: 168 NNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQV---YEGEAPSPLALPGAKERV-- 222
Query: 378 CLAQSFSK--NMGLYGERVG 395
S SK N+ G R+G
Sbjct: 223 VELFSLSKSYNLA--GFRLG 240
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 41.1 bits (97), Expect = 7e-04
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 299 GMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSG 358
D+ I+F S +NPTG + Q +L ++ +D AY
Sbjct: 199 HFFPDLSKAKRTDIIFF-CSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYI-- 255
Query: 359 DFDKDA----FSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+ D + + A EV SFSK G G R+G
Sbjct: 256 -SNPDCPKTIYEIPG-ADEVA--IETCSFSKYAGFTGVRLG 292
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, ,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Porphyromonas gingivalis}
Length = 350
Score = 41.0 bits (97), Expect = 8e-04
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 302 EDIKAMPER-SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360
+ +A +L + +NP G L + +L D +Y+ F
Sbjct: 121 DIGEADFSNMDFCWL-CNPNNPDGRLLQRTEILRLLNDHPDTTF--VLDQSYV-----SF 172
Query: 361 DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+ K L + SFS G+ G R+G
Sbjct: 173 TTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIG 207
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 40.6 bits (96), Expect = 0.001
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYF--AKEVGQL 377
+NPTG +++ + + K D AY FD S+ K+V
Sbjct: 191 NNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFG---FDAKNPSILASENGKDVA-- 245
Query: 378 CLAQSFSK--NMGLYGERVG 395
S SK NM G RVG
Sbjct: 246 IEIYSLSKGYNMS--GFRVG 263
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 40.8 bits (96), Expect = 0.001
Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 36/155 (23%)
Query: 253 RFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYR--YFDNKTNGLDFAGMMEDIKAMPER 310
++ GV+ V + NG F ++ A Y + + L +K
Sbjct: 153 KWRTGVEIVPIHCTSSNG---F----QITETALEEAYQEAEKRNLR-------VKG---- 194
Query: 311 SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAF----S 366
+L T+ NP G ++ ++ L V+ + ++ D Y G F +F
Sbjct: 195 -VLV--TNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTA---FSSPSFISVME 248
Query: 367 LRYFAKEVGQLCLAQ------SFSKNMGLYGERVG 395
+ + Q S SK++GL G RVG
Sbjct: 249 VLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVG 283
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 40.7 bits (96), Expect = 0.001
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 25/146 (17%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAF-SLRYFAKEVGQLC 378
NPTG +++++ +L + Q ++ D AY G+ F F R LC
Sbjct: 190 TNPTGNVITDEELMKLDRLANQHNIPLVIDNAY-GVP---FPGIIFSEARPLWNPNIILC 245
Query: 379 LAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILS 438
+ S SK +GL G R G ++ ++ ++ + + P G ++ E++
Sbjct: 246 M--SLSK-LGLPGSRCG--IIIAN-----DKTITAIANMNGIISLAPGGMGPAMMCEMIK 295
Query: 439 DPKLKAQCDETERIMSQLKILIRGFY 464
L + +I+ FY
Sbjct: 296 RNDLLRLSET----------VIKPFY 311
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc,
dipeptide L-Leu-D-Ala, PSI-2, P structure initiative;
HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Length = 318
Score = 39.9 bits (94), Expect = 0.001
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 25/108 (23%)
Query: 222 EDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRL 280
D ++++ + + G + L + GV +V TWN
Sbjct: 90 CDLENLPEDKIGAMLTLEGIEPIGRDLDKLTQLLDGGVLSV---GLTWNNANLAAD---- 142
Query: 281 NVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
G + + GL G + I + ER + D+S
Sbjct: 143 --GIM---EERGAGLTRFG-KDIIHLLNERKVF-----------TDVS 173
Score = 33.0 bits (76), Expect = 0.21
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 10/73 (13%)
Query: 54 YRYFDNKTNGLDFAGMMEDI------KLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYF 106
++ +K + D+ K+ + + G + L + GV +V
Sbjct: 73 KQHVLHKGGIIHHVKKWCDLENLPEDKIGAMLTLEGIEPIGRDLDKLTQLLDGGVLSV-- 130
Query: 107 PTPTWNGHVRFCT 119
TWN
Sbjct: 131 -GLTWNNANLAAD 142
Score = 29.5 bits (67), Expect = 3.0
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCT 45
+ + + G + L + GV +V TWN
Sbjct: 100 IGAMLTLEGIEPIGRDLDKLTQLLDGGVLSV---GLTWNNANLAAD 142
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural
genomics, nysgrc, target 9523C, phosphinate inhibitor,
PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB:
3fdg_A
Length = 364
Score = 39.7 bits (93), Expect = 0.002
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 19/104 (18%)
Query: 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGA 284
D ++ + + G+ ++ L F+ G++++ P W+ F
Sbjct: 126 CHADGIVSGIMHMEGAEAIGADLDALHLFHSLGLRSL---GPVWSRPTVFG-HG--VPFR 179
Query: 285 YRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
+ + GL AG + I+ +DLS
Sbjct: 180 FPGSPDTGEGLTEAG-RRLVAECNRLKIM-----------LDLS 211
Score = 33.5 bits (77), Expect = 0.17
Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 18/99 (18%)
Query: 61 TNGLDFAGMMEDIKLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCT 119
+ D ++ + + G+ ++ L F+ G++++ P W+ F
Sbjct: 118 RTAAEVRSCHADGIVSGIMHMEGAEAIGADLDALHLFHSLGLRSL---GPVWSRPTVFG- 173
Query: 120 DSRLNVGAYRYFDNKTNGL-DF----------AGMMEDI 147
+ + GL + +M D+
Sbjct: 174 HG--VPFRFPGSPDTGEGLTEAGRRLVAECNRLKIMLDL 210
Score = 31.2 bits (71), Expect = 0.91
Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 18/85 (21%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 59
++ + + G+ ++ L F+ G++++ P W+ F + +
Sbjct: 132 VSGIMHMEGAEAIGADLDALHLFHSLGLRSL---GPVWSRPTVFG-HG--VPFRFPGSPD 185
Query: 60 KTNGL-DF----------AGMMEDI 73
GL + +M D+
Sbjct: 186 TGEGLTEAGRRLVAECNRLKIMLDL 210
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 39.4 bits (93), Expect = 0.002
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 28/102 (27%)
Query: 303 DIKAMPERS---ILFLQTSSHNPTGVDLSEDQWRQLA-----VVVKQRHLYPFFDMAYLG 354
D + + S + L + NPTG LS + QL +++ D Y
Sbjct: 126 DPNDLAQVSRDDCVVL-ANPSNPTGQALSAGELDQLRQRAGKLLI---------DETY-- 173
Query: 355 LTSGDF-DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
D+ A L Y + +SFSK+ GL G R+G
Sbjct: 174 ---VDYSSFRARGLAYGEN----ELVFRSFSKSYGLAGLRLG 208
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 39.1 bits (92), Expect = 0.003
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 22/111 (19%)
Query: 294 GLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA------VVVKQRHLYPF 347
D G+ + A SI++L + +NPTG D +
Sbjct: 126 AFDIEGLKAAVAAYSGPSIVYL-VNPNNPTGTITPADVIEPWIASKPANTMF-------I 177
Query: 348 FDMAYLGLTSGDF-DKDAF--SLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
D AY +F + F + + L ++FSK + G RVG
Sbjct: 178 VDEAYA-----EFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVG 223
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, protein structure initiative; 2.00A {Caulobacter
crescentus}
Length = 417
Score = 39.4 bits (92), Expect = 0.003
Identities = 13/109 (11%), Positives = 28/109 (25%), Gaps = 21/109 (19%)
Query: 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGA 284
K + + S + + +E FY G++ P + + +
Sbjct: 146 IAKAGKKFAFVSMENSWPVGEDLSLVETFYKEGLRMA---GPVHFRNNQLAD------SS 196
Query: 285 YRYFDNKTNGL-DF----------AGMMEDIKAMPERSILFLQTSSHNP 322
NG G++ D+ + + S P
Sbjct: 197 TDPKGKIWNGYSPLGLRWLAEANRLGIVIDVSHASDDVVDQSVALSKAP 245
Score = 34.0 bits (78), Expect = 0.14
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 10/79 (12%)
Query: 61 TNGLDFAGMMEDIKLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCT 119
D + + K + S + + +E FY G++ P + +
Sbjct: 138 LTSDDARRIAKAGKKFAFVSMENSWPVGEDLSLVETFYKEGLRMA---GPVHFRNNQLAD 194
Query: 120 DSRLNVGAYRYFDNKTNGL 138
+ NG
Sbjct: 195 ------SSTDPKGKIWNGY 207
Score = 31.3 bits (71), Expect = 0.98
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 10/65 (15%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 59
+ S + + +E FY G++ P + + +
Sbjct: 152 KFAFVSMENSWPVGEDLSLVETFYKEGLRMA---GPVHFRNNQLAD------SSTDPKGK 202
Query: 60 KTNGL 64
NG
Sbjct: 203 IWNGY 207
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 38.6 bits (90), Expect = 0.005
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 18/149 (12%)
Query: 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD------FDKDAFSLRYFAKEV 374
NPTG L+E+ + K L D Y D F K SL Y +++
Sbjct: 248 NPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDL 307
Query: 375 GQLCLAQSFSKN-MGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIV 433
L QS SK G G+R G F + ++ + Q+ + I G +
Sbjct: 308 -PLVSYQSVSKGYYGECGKRGGYFEITGFSAP----VREQIYKIAS-VNLCSNITGQILA 361
Query: 434 TEILSDPK-----LKAQCDETERIMSQLK 457
+ +++ PK + E + I++ L
Sbjct: 362 SLVMNPPKASDESYASYKAEKDGILASLA 390
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET
lactamase, cilastatin, complex (hydrolase-inhibitor),
hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7
PDB: 1itq_A*
Length = 369
Score = 38.1 bits (89), Expect = 0.006
Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 19/104 (18%)
Query: 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGA 284
AF++ ++A + G+ G S+ L Y G++ + T T + + + + ++ G
Sbjct: 112 AFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYL---TLTHSCNTPWADNWLVDTGD 168
Query: 285 YRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLS 328
+ ++ GL G +K + +L +DL+
Sbjct: 169 S---EPQSQGLSPFG-QRVVKELNRLGVL-----------IDLA 197
Score = 32.7 bits (75), Expect = 0.34
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 18/99 (18%)
Query: 61 TNGLDFAGMMEDIKLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCT 119
T+ + K+A + G+ G S+ L Y G++ + T T + + +
Sbjct: 104 TSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYL---TLTHSCNTPWAD 160
Query: 120 DSRLNVGAYRYFDNKTNGL-DF----------AGMMEDI 147
+ ++ G + ++ GL F G++ D+
Sbjct: 161 NWLVDTGDS---EPQSQGLSPFGQRVVKELNRLGVLIDL 196
Score = 30.0 bits (68), Expect = 2.2
Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 59
+A + G+ G S+ L Y G++ + T T + + + + ++ G +
Sbjct: 118 VASLIGVEGGHSIDSSLGVLRALYQLGMRYL---TLTHSCNTPWADNWLVDTGDS---EP 171
Query: 60 KTNGL-DF----------AGMMEDI 73
++ GL F G++ D+
Sbjct: 172 QSQGLSPFGQRVVKELNRLGVLIDL 196
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 38.0 bits (89), Expect = 0.006
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 299 GMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSG 358
+ IL L S +NPTG L++DQ R + + + FD AY
Sbjct: 153 AFFPEFPEDTHIDILCL-CSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFI-- 209
Query: 359 DFDKDA----FSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
D F + A+ SFSK +G G R+G
Sbjct: 210 -SDPSLPKSIFEIPD-ARFCA--IEINSFSKPLGFAGIRLG 246
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 37.9 bits (89), Expect = 0.007
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 27/106 (25%)
Query: 296 DFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA-----VVVKQRHLYPFFDM 350
D + E ++F+ + +NPTG ++ ++ V + D
Sbjct: 128 DLR-IPEVNVGEG--DVVFI-PNPNNPTGHVFEREEIERILKTGAFVAL---------DE 174
Query: 351 AYLGLTSGDF-DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
AY +F + K+ L + ++FSK L +RVG
Sbjct: 175 AY-----YEFHGESYVDF---LKKYENLAVIRTFSKAFSLAAQRVG 212
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A
{Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A*
3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Length = 400
Score = 37.8 bits (88), Expect = 0.007
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGA 284
A + R+A + G G S+ A L Y GV+ + T T N + + +
Sbjct: 110 ARAEGRIASLMGAEGGHSIDNSLATLRALYALGVRYM---TLTHNDNNAWADSA------ 160
Query: 285 YRYFDNKTNGLDFAGMMEDIKAMPERSIL 313
+ GL G E ++ M +L
Sbjct: 161 --TDEPGVGGLSAFG-REVVREMNREGML 186
Score = 32.4 bits (74), Expect = 0.37
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 12/83 (14%)
Query: 61 TNGLDFAGMMEDIKLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCT 119
D + ++A + G G S+ A L Y GV+ + T T N + +
Sbjct: 102 LTAADMEAARAEGRIASLMGAEGGHSIDNSLATLRALYALGVRYM---TLTHNDNNAWAD 158
Query: 120 DSRLNVGAYRYFDNKTNGLDFAG 142
+ + GL G
Sbjct: 159 SA--------TDEPGVGGLSAFG 173
Score = 30.1 bits (68), Expect = 2.1
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 1 LAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 59
+A + G G S+ A L Y GV+ + T T N + + + +
Sbjct: 116 IASLMGAEGGHSIDNSLATLRALYALGVRYM---TLTHNDNNAWADSA--------TDEP 164
Query: 60 KTNGLDFAG 68
GL G
Sbjct: 165 GVGGLSAFG 173
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 37.7 bits (88), Expect = 0.008
Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 34/153 (22%)
Query: 253 RFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYR--YFDNKTNGLDFAGMMEDIKAMPER 310
R+ GV+ + + N F ++ A + Y + + + + +K
Sbjct: 150 RWRTGVQLIPIHCESSNN---F----KITSKAVKEAYENAQKSNIK-------VKG---- 191
Query: 311 SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAF-SLRY 369
++ T+ NP G L +D + + Q +++ D Y FD F S+
Sbjct: 192 -LIL--TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATV---FDTPQFVSIAE 245
Query: 370 FAKEVGQLCLAQ-------SFSKNMGLYGERVG 395
E + S SK+MGL G RVG
Sbjct: 246 ILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVG 278
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 37.1 bits (87), Expect = 0.012
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 302 EDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFD 361
D + ++ S NPTG L L + + D Y G+ ++
Sbjct: 155 ADFAGLDLAGLMV--ASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIE---YE 209
Query: 362 KDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
A + E + SFSK + G RVG
Sbjct: 210 AKAVTALELTDEC---YVINSFSKYFSMTGWRVG 240
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis,
pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP
PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Length = 391
Score = 37.2 bits (86), Expect = 0.013
Identities = 22/147 (14%), Positives = 33/147 (22%), Gaps = 29/147 (19%)
Query: 249 AFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMP 308
A +V P + T Y + + G
Sbjct: 110 ALSSLARSQPVSVVAAAPFY-STYVEETT---------YVRSG--MYKWEGDAWGFDK-K 156
Query: 309 ERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLR 368
I + TS +NP G + D AY
Sbjct: 157 GPYIELV-TSPNNPDGTIRET-----VVNRPDDDEAKVIHDFAYYWPHYTPI-------- 202
Query: 369 YFAKEVGQLCLAQSFSKNMGLYGERVG 395
+ + +FSK G G R+G
Sbjct: 203 --TRRQDHDIMLFTFSKITGHAGSRIG 227
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 37.0 bits (86), Expect = 0.013
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 26/152 (17%)
Query: 256 PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNG--LDFAGM----MEDIKAMPE 309
VK P P ++ H F + ++ G +E++ P+
Sbjct: 132 ETVK-WICPVPGYDRHF----------SITERFGFEMISVPMNEDGPDMDAVEELVKNPQ 180
Query: 310 RSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRH-LYPFFDMAYLGLT-SGDFDK--DAF 365
+++ NPTG ++ED ++L+ + +D AY T + +F + D
Sbjct: 181 VKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIV 240
Query: 366 SLRYFAKEVGQLCLAQSFSKNM--GLYGERVG 395
L A + S SK G V
Sbjct: 241 GLGEAAGNPNRFWAFTSTSKITLAGA---GVS 269
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 37.2 bits (87), Expect = 0.014
Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 40/160 (25%)
Query: 249 AFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTN-GLDFAGMMEDIKAM 307
A PG V P P + + + + + LD M+ +
Sbjct: 104 AAAR---PG-AKVMAPVPGF-VMYAMSA--QFAGLEFVGVPLRADFTLDRGAMLAAMAE- 155
Query: 308 PERSILFLQTSSHNPTGVDLSEDQWRQLA-----------VVVKQRHLYPFFDMAYLGLT 356
+ +I++L +NPTG + VVV D AY
Sbjct: 156 HQPAIVYL-AYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVV---------DEAY---- 201
Query: 357 SGDF-DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
F + S + G L + ++ SK +GL G R+G
Sbjct: 202 -QPFAQESWMSR---LTDFGNLLVMRTVSK-LGLAGIRLG 236
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics,
protein structure initiative; 2.60A {Pseudomonas
aeruginosa}
Length = 325
Score = 37.0 bits (86), Expect = 0.015
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 226 AFKDNRLAIVQGISGSGSLRVGTAFLERFYP-GVKTVYFPTPTWNGHVRFCT 276
A + + I+ G + + ++E F GV V +N T
Sbjct: 80 AKEQGKTGILYGFQNAHAFEDQIGYVEVFKQLGVGIV---QMCYNTQNLVGT 128
Score = 32.7 bits (75), Expect = 0.31
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 54 YRYFDNKTNGLDFAGMMEDI-------KLAIVQGISGSGSLRVGTAFLERFYP-GVKTVY 105
+ + ++ + DI K I+ G + + ++E F GV V
Sbjct: 58 NKLIRDNSDLVIPVRSTADIRKAKEQGKTGILYGFQNAHAFEDQIGYVEVFKQLGVGIV- 116
Query: 106 FPTPTWNGHVRFCT 119
+N T
Sbjct: 117 --QMCYNTQNLVGT 128
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 36.4 bits (85), Expect = 0.022
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFD-KDAFSLRYF--AKEVGQ 376
NPT + D + ++ + KQ + D+AY + +D A S+ AK++
Sbjct: 182 SNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIV---YDGWKAPSIMQVPGAKDIA- 237
Query: 377 LCLAQSFSK--NMGLYGERVG 395
+ SK NM G R+G
Sbjct: 238 -VEFFTLSKSYNMA--GWRIG 255
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe
structural genomics, PSI-2, protein structure
initiative; 2.00A {Corynebacterium diphtheriae}
Length = 422
Score = 36.2 bits (84), Expect = 0.028
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
Query: 293 NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAY 352
G D G++ ++ P+ ++ NPTGV SE R+LA + +
Sbjct: 163 EGPD-MGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIV---- 217
Query: 353 LGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERV---GTFS-VLTP 402
+D +A++L + E + F++ G R + S +
Sbjct: 218 -------WD-NAYALHTLSDEFPIVHNVIEFAQAAGNPN-RFWFMSSTSKITHA 262
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET: LLP
MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 34.8 bits (81), Expect = 0.059
Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 22/109 (20%)
Query: 296 DFAGMMEDIKAMPER-SILFLQTSSHNPTGVDLSEDQWRQLA--------VVVKQRHLYP 346
+F + + + ++FL +NP G L + + VV+
Sbjct: 142 EFKKL---YETHKDEIKLIFL-CLPNNPLGECLDASEATEFIKGVNEDCLVVI------- 190
Query: 347 FFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
D AY S K KE + +FSK GL G R+G
Sbjct: 191 --DAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIG 237
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 34.8 bits (81), Expect = 0.062
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDF 360
+NPTG + +L + + Y D Y + D
Sbjct: 164 NNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDV 204
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 35.0 bits (81), Expect = 0.063
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFS 366
+NPT +++++ R + + + + D+AY G+ F KD
Sbjct: 192 NNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMD---FRKDYSH 235
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 34.5 bits (80), Expect = 0.089
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 290 NKTNGLDFAGMMEDIKAMPER-SILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFF 348
+ D GM + A+ E+ +I+++ + +NPTG + + V L
Sbjct: 138 LQDGEHDLEGM---LNAIDEKTTIVWI-CNPNNPTGNYIELADIQAFLDRVPSDVLV-VL 192
Query: 349 DMAYLGLTSGDF-DKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
D AY+ ++ + L + ++FSK GL RVG
Sbjct: 193 DEAYI-----EYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVG 235
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.12
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 145 EDIKPLKQQLKGFNKDPHPKKMNLGVGA 172
+ +K L+ LK + D P L + A
Sbjct: 20 QALKKLQASLKLYADDSAPA---LAIKA 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.14
Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 52/180 (28%)
Query: 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFY 422
DA+S R G L +L PT+ I SQL+ F
Sbjct: 2 DAYSTRPLTLSHGSL------------------EHVLLVPTASFF--IASQLQ---EQFN 38
Query: 423 S------------NPPIHGARIVTEIL---SDPKLKAQCDETERIMSQLKILIRGF---Y 464
+ P A +V + L S ++ + +++ L + + F Y
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV---LNLCLTEFENCY 95
Query: 465 -SNPPIHG--ARIVTEILSDPKLKAQWFE---ECKGMSNRISSIREELKSKILDKGSKKN 518
IH A+++ E + + + + M+ R ++ S + + N
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR--PFDKKSNSALFRAVGEGN 153
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 33.3 bits (77), Expect = 0.22
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 21/110 (19%)
Query: 296 DFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGL 355
D+ + E++ ++F+ S +NP+G L D W+++ + + D Y +
Sbjct: 157 DWRSISEEVWKRT--KLVFV-CSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEI 213
Query: 356 TSGDFDKD-------AFSLRYFAKEVGQLCLA-QSFSK--NMGLYGERVG 395
FD + A + +++ L S SK N+ G R G
Sbjct: 214 Y---FDGNKPLGCLQAAAQLGRSRQK---LLMFTSLSKRSNVP--GLRSG 255
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple
complex, schiff-base linkage, kynuren aminotransferase;
HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A*
3ath_A* 3av7_A* 1x0m_A 1wst_A*
Length = 448
Score = 33.4 bits (77), Expect = 0.23
Identities = 21/112 (18%), Positives = 46/112 (41%), Gaps = 18/112 (16%)
Query: 293 NGLDFAGMMEDIKAMPERS----ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFF 348
G+ + E +K + + +++ + NP GV ++ED+ + L + +
Sbjct: 196 EGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVE 255
Query: 349 DMAYLGLTSGD--FDKDAF-SLRYFAKEVGQLCLAQSFSKNM--GLYGERVG 395
D Y G+ + + ++ E G++ +FSK + G R+G
Sbjct: 256 DDPY-----GELRYSGNPEKKIKALDNE-GRVIYLGTFSKILAPGF---RIG 298
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural
genomics consortium, pyridoxal phosphate; HET: PLP;
2.30A {Homo sapiens}
Length = 498
Score = 33.2 bits (76), Expect = 0.24
Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 11/105 (10%)
Query: 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLT-SGD-----FDKDAFSLRYFAKEV 374
NPTG S + + L+ D Y S D F K + +
Sbjct: 246 NPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSN 305
Query: 375 GQLCLAQSFSKN-MGLYGERVGTFSVLTPTSDETERIMSQLKILI 418
+L S SK MG G R G V+ + I QL L+
Sbjct: 306 VELASFHSTSKGYMGECGYRGGYMEVINLHPE----IKGQLVKLL 346
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 33.1 bits (76), Expect = 0.27
Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 19/156 (12%)
Query: 236 QGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGL 295
G+ G +L K + P ++ H D +++G
Sbjct: 111 HGVRG-----STGPWLS---QTPK-MIVTVPGYDRHFLLLQTLGFE---LLTVDMQSDGP 158
Query: 296 DFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFF-DMAYLG 354
D + P + + NP G +S ++ R+LA + + F D AY
Sbjct: 159 DVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRV 218
Query: 355 LT-SGDFDKDAFSLRYFAKEVGQ----LCLAQSFSK 385
+ + + A++ G A S SK
Sbjct: 219 HHLVEEDRAEPVNFVVLARDAGYPDRAFVFA-STSK 253
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 32.9 bits (76), Expect = 0.27
Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 13/129 (10%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQ------RHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE 373
+NP+G SE+ ++L+ ++++ R ++ D Y + +D +
Sbjct: 182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIV---YDGIKVPFVTKYYD 238
Query: 374 VGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGF-YSNPPIHGARI 432
+ S+SK++ L GER+G + ++ + + + + R Y P ++
Sbjct: 239 --NTLVCYSYSKSLSLPGERIG-YVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKM 295
Query: 433 VTEILSDPK 441
+ +
Sbjct: 296 IVKCQGATG 304
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis,
hydrogen ION transport, ION transport, transport,
hydrolase; NMR {Methanocaldococcus jannaschii}
Length = 52
Score = 29.8 bits (66), Expect = 0.29
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 483 KLKAQWFEECKGMSNRISSIREELKSKILDKGSKK 517
K+K++ ++ K +N+I S E K+KIL+K ++
Sbjct: 10 KIKSKILDDAKAEANKIISEAEAEKAKILEKAKEE 44
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 32.2 bits (74), Expect = 0.43
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 293 NGLDFAGMMEDIKAMPERS----ILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFF 348
+G+ + E IK + + +++ + NP GV +S ++ + L + + L
Sbjct: 154 DGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIE 213
Query: 349 DMAYLGLTSGD--FDKDAF-SLRYFAKEVGQLCLAQSFSKNM--GLYGERVG 395
D AY ++ L+ E G++ +A + SK + G R+G
Sbjct: 214 DTAY-----NFMRYEGGDIVPLKALDNE-GRVIVAGTLSKVLGTGF---RIG 256
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 32.2 bits (74), Expect = 0.49
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVG---- 375
+NPTG LS ++ + + D Y + + SL G
Sbjct: 164 NNPTGRTLSLEELISWVKLALKHDFILINDECYSEIY---ENTPPPSLLEACMLAGNEAF 220
Query: 376 QLCLA-QSFSKNMGLYGERVG 395
+ L S SK G R G
Sbjct: 221 KNVLVIHSLSKRSSAPGLRSG 241
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 32.2 bits (74), Expect = 0.53
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLY 345
+A + +FL ++ +NP GV S ++ Q+A + +
Sbjct: 174 EAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGAT 214
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 32.1 bits (73), Expect = 0.57
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQR--HLYPFFDMAYLGLTSGDFDK 362
K +F + NP V + + ++ +V + L D Y G F
Sbjct: 240 KLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVY-----GTFAD 294
Query: 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
D SL E L SFSK G G R+G
Sbjct: 295 DFQSLFAICPE--NTLLVYSFSKYFGATGWRLG 325
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 31.8 bits (73), Expect = 0.66
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 321 NPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLA 380
NPTGV +D+ R L + ++ L+ D Y + F + S + ++ +
Sbjct: 185 NPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIV---FRGEFASALSIESD--KVVVI 239
Query: 381 QSFSKNMGLYGERVG 395
S SK G RVG
Sbjct: 240 DSVSKKFSACGARVG 254
>1vp4_A Aminotransferase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 425
Score = 31.5 bits (72), Expect = 0.84
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGD--FDKDAF-SLRYFAKEVGQ 376
HNP GV S ++ + L + ++ L+ D Y G ++ + + +
Sbjct: 198 HNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPY-----GALRYEGETVDPIFKIGGP-ER 251
Query: 377 LCLAQSFSKNM--GLYGERVG 395
+ L +FSK + GL R+G
Sbjct: 252 VVLLNTFSKVLAPGL---RIG 269
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 30.6 bits (69), Expect = 0.94
Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 19/124 (15%)
Query: 313 LFLQTSSHNPTGVDLSE---DQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRY 369
FL + + T VD S + +QLA + ++A + + ++ +
Sbjct: 45 CFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCH 104
Query: 370 FAKEV---------------GQLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQL 414
+ G + + F+ Y L P + + + L
Sbjct: 105 LPSSLRQQLYPKVYQGLKPGGVF-ILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELPSL 163
Query: 415 KILI 418
LI
Sbjct: 164 NWLI 167
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 31.1 bits (71), Expect = 1.1
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAF-SLRYFAKEVGQLC 378
+NPTG L+ ++ +++ + ++ D Y L F+K + + G++
Sbjct: 201 NNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQ---FNKFRVPTFLSMDVD-GRVI 256
Query: 379 LAQSFSKNM--GLYGERVG 395
A SFSK + GL R+G
Sbjct: 257 RADSFSKIISSGL---RIG 272
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 30.9 bits (71), Expect = 1.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 321 NPTGVDLSEDQWRQLAVVVKQRHLY 345
NPTG L++ ++A V + L
Sbjct: 171 NPTGAVLTKKDLEEIADFVVEHDLI 195
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 31.0 bits (71), Expect = 1.2
Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 16/110 (14%)
Query: 293 NGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAY 352
G D + E +K R L+L S NPTG ++L +V +R L D AY
Sbjct: 147 EGPDLDALEEVLKRERPR-FLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAY 205
Query: 353 LGLTSGD--FDKDAF-SLRYFAKEVGQLC--LAQSFSKNM--GLYGERVG 395
+ F + SL A+E G SFSK + GL RV
Sbjct: 206 -----RELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL---RVA 247
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 30.9 bits (70), Expect = 1.4
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLA-VVVKQRHLYPFFDMAYLGLTSGDFDKD 363
K + + NPT + + + V K L D Y G F +
Sbjct: 239 KLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVY-----GAFVPN 293
Query: 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
S+ L S+SK G G R+G
Sbjct: 294 FKSIYSVVPY--NTMLVYSYSKLFGCTGWRLG 323
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 30.6 bits (70), Expect = 1.5
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLY 345
+ ++ L S +NPTGV + L + K+R+ Y
Sbjct: 169 GLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFY 209
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 30.6 bits (70), Expect = 1.5
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 13/80 (16%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKE----VG 375
NPTG+ E + +A + + L+ D Y L + + LR FA E VG
Sbjct: 162 MNPTGLVFGERELEAIARLARAHDLFLISDEVYDELY---YGERPRRLREFAPERTFTVG 218
Query: 376 QLCLAQSFSKNMGLYGERVG 395
S K + G RVG
Sbjct: 219 ------SAGKRLEATGYRVG 232
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 30.6 bits (70), Expect = 1.5
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDA 364
+A+ R+ + S +NPTG ++ LA + + Y D Y L ++ +
Sbjct: 159 RAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLL---YEGEH 215
Query: 365 FSLRYFAKE 373
FS A E
Sbjct: 216 FSPGRVAPE 224
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 30.6 bits (70), Expect = 1.5
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 305 KAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLY 345
+A+ ++ L + + NPTG+ + D+ R +A V + L+
Sbjct: 158 QAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLW 198
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 29.5 bits (66), Expect = 3.3
Identities = 39/260 (15%), Positives = 75/260 (28%), Gaps = 71/260 (27%)
Query: 173 YRGEDGKPYVLPSVKEAERRIYEKN----LDHEYANIGGDAKFCKLAAQLAYGEDFPAFK 228
Y ++ +++ + ++E Y G ++ + A
Sbjct: 92 YFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTA-- 149
Query: 229 DNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYF 288
P K V P + +YF
Sbjct: 150 -----------------------TPDAPESK-VVAHAPFYPVFR----------EQTKYF 175
Query: 289 DNKTNGLDFAGMMEDIKAM--PERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYP 346
D K +AG + + PE+ I + TS +NP G + AV+ + +Y
Sbjct: 176 DKKGYV--WAGNAANYVNVSNPEQYIEMV-TSPNNPEG-------LLRHAVIKGCKSIY- 224
Query: 347 FFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGTFSVLTPTSDE 406
DM Y ++ + + + L + SK G G R G ++++
Sbjct: 225 --DMVYYWPH--------YTPIKYKAD--EDILLFTMSKFTGHSGSRFG-WALIKD---- 267
Query: 407 TERIMSQLKILIRGFYSNPP 426
E + + L + P
Sbjct: 268 -ESVYNNLLNYMTKNTEGTP 286
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase
inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB:
3ton_A*
Length = 908
Score = 29.9 bits (67), Expect = 3.3
Identities = 27/237 (11%), Positives = 56/237 (23%), Gaps = 33/237 (13%)
Query: 128 YRYFDNKTNGLDFAGMMEDIKPLKQQLKGFNKDPHPKK------------MNLGVGAYRG 175
F F ++ +K ++ DP + V
Sbjct: 335 QLDFTLSPKFAGFPALINRMKADGMRV-ILILDPAISGNETQPYPAFTRGVEDDVFIKYP 393
Query: 176 EDGKPY---VLPSVKEAERRIYEKNLDHEYANIGGDA--KFCKLAAQLAYGEDFPAFKDN 230
DG V P + A F + + + + +N
Sbjct: 394 NDGDIVWGKVWPDFPDVVVNGSLDWDSQVELYRAYVAFPDFFRNSTAKWWKREIEELYNN 453
Query: 231 RLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDN 290
+ + G + + F G + + N R +
Sbjct: 454 PQNPERSLKFDG-MWIDMNEPSSFVNGAVSPGCRDASLNHPPYMPH----LESRDRGLSS 508
Query: 291 KTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPF 347
KT ++ ++ D + ++ HN G + + + V QR
Sbjct: 509 KTLCMESQQILPDGSLVQHYNV-------HNLYGWSQTRPTYEAVQEVTGQR---GV 555
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 29.5 bits (67), Expect = 3.7
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLY 345
HNP+ + + L + ++
Sbjct: 173 HNPSATVWQQADFAALWQAIAGHEIF 198
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 29.2 bits (66), Expect = 4.1
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLY 345
HNP G + + + +A + +
Sbjct: 177 HNPLGKVYTRQELQVIADLCVKHDTL 202
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 29.1 bits (66), Expect = 4.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLY 345
HNPTG LS + +A + +L
Sbjct: 170 HNPTGAVLSATELAAIAEIAVAANLV 195
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 29.2 bits (66), Expect = 4.3
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLY 345
HNP G + + +A + K+ ++
Sbjct: 192 HNPLGKVMDRAELEVVANLCKKWNVL 217
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 29.2 bits (66), Expect = 4.6
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLY 345
HNP G + ++ L + + ++
Sbjct: 211 HNPIGKVFTREELTTLGNICVKHNVV 236
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 29.2 bits (66), Expect = 4.7
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 320 HNPTGVDLSEDQWRQLAVVVKQRHLY 345
+NP G S ++ +A + +Q +
Sbjct: 184 NNPLGKVFSREELELVASLCQQHDVV 209
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding, molybdopterin;
HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A*
2vpw_A* 2vpy_A*
Length = 765
Score = 28.8 bits (65), Expect = 6.1
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 18/83 (21%)
Query: 207 GDAK-----FCKLAAQLAYGEDFP-----AFKDNRLAIVQGIS-----GSGSLRVGTAFL 251
D K +L +L + FP + + RL + G+ G G+L
Sbjct: 513 FDTKPGWWIARELGLRLGLEQYFPWKTIEEYLETRLQSL-GLDLETMKGMGTLVQRGKPW 571
Query: 252 ERFYPGVKTVYFPTPTWNGHVRF 274
+ + F T + G +
Sbjct: 572 LEDWEKEGRLPFGTAS--GKIEL 592
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,357,165
Number of extensions: 588088
Number of successful extensions: 1621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1500
Number of HSP's successfully gapped: 152
Length of query: 583
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 484
Effective length of database: 3,937,614
Effective search space: 1905805176
Effective search space used: 1905805176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)