RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14428
(583 letters)
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 232 bits (591), Expect = 5e-71
Identities = 157/388 (40%), Positives = 227/388 (58%), Gaps = 48/388 (12%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYE-KNLDHEYANIGGDAKFCKLA 215
F +DP P+K+NLGVGAYR +D +P+VLP V++ E+RI +L+HEY I G A+F A
Sbjct: 24 FREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83
Query: 216 AQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGV----KTVYFPTPTWNGH 271
++LA G+D PA ++ R+ VQ + G+G+LR+G FL R+Y G VY +PTW H
Sbjct: 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENH 143
Query: 272 VRFCTDSRLN-VGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSED 330
T + + +YRY+D + GLD G + D++ PE SI L +HNPTG D + +
Sbjct: 144 NGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPE 203
Query: 331 QWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLY 390
QW+Q+A V+K+R L+PFFD AY G SG+ +KDA+++RYF E +L AQSFSKN GLY
Sbjct: 204 QWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLY 263
Query: 391 GERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETE 450
ERVG +V+ + D
Sbjct: 264 NERVGNLTVVAK------------------------------------------EPDSIL 281
Query: 451 RIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKI 510
R++SQ++ ++R +SNPP GARIV LSDP+L +W K M++RI S+R EL++++
Sbjct: 282 RVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARL 341
Query: 511 LDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ W+HIT+Q GMF +TGL+ Q
Sbjct: 342 EALKTPGTWNHITDQIGMFSFTGLNPKQ 369
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken
(Gallus gallus), mitochondria [TaxId: 9031]}
Length = 401
Score = 220 bits (561), Expect = 9e-67
Identities = 179/382 (46%), Positives = 240/382 (62%), Gaps = 42/382 (10%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAA 216
F +D + KKMNLGVGAYR ++GKPYVL V++AE I K +D EY I G A F + +A
Sbjct: 22 FKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA 81
Query: 217 QLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCT 276
+LA GE+ AFK R VQGISG+GSLRVG FL+RF+ + VY P P+W H
Sbjct: 82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR 141
Query: 277 DSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLA 336
D+ L + AYRY+D KT LDF G MEDI +PE+SI+ L +HNPTGVD ++QW++LA
Sbjct: 142 DAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELA 201
Query: 337 VVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVGT 396
VVK+R+L +FDMAY G SGD ++DA++LR+F ++ + L+QS++KNMGLYGER G
Sbjct: 202 SVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGA 261
Query: 397 FSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERIMSQL 456
F+V+ +E +R+ SQL
Sbjct: 262 FTVICR------------------------------------------DAEEAKRVESQL 279
Query: 457 KILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSK 516
KILIR YSNPP++GARI + IL+ P+L+ +W E KGM++RI S+R +L S + +GS
Sbjct: 280 KILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSS 339
Query: 517 KNWDHITNQKGMFCYTGLSASQ 538
NW HIT+Q GMFC+TGL Q
Sbjct: 340 HNWQHITDQIGMFCFTGLKPEQ 361
>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's
yeast (Saccharomyces cerevisiae), cytosolic form [TaxId:
4932]}
Length = 412
Score = 207 bits (528), Expect = 7e-62
Identities = 134/386 (34%), Positives = 205/386 (53%), Gaps = 43/386 (11%)
Query: 157 FNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIY-EKNLDHEYANIGGDAKFCKLA 215
+ +D K++LG+GAYR ++GKP+VLPSVK AE+ I+ + + +HEY I G A
Sbjct: 23 YGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNA 82
Query: 216 AQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFC 275
A++ +G A +++R+ VQ +SG+G+L + F +F+P K VY PTW H+
Sbjct: 83 AKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPD-KLVYLSKPTWANHMAIF 141
Query: 276 TDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQTSSHNPTGVDLSEDQWRQL 335
+ L Y Y+ N+T LD G + I+ PE SI L + +HNPTG+D + +QW Q+
Sbjct: 142 ENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQI 201
Query: 336 AVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ---LCLAQSFSKNMGLYGE 392
+ ++ FD AY G +GD DKDA+++R +++ + + QSF+KN G+YGE
Sbjct: 202 VDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE 261
Query: 393 RVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQCDETERI 452
RVG F L+ K +
Sbjct: 262 RVGCF--------------------------------------HLALTKQAQNKTIKPAV 283
Query: 453 MSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILD 512
SQL +IR SNPP +GA+IV ++L P+L QW ++ MS+RI+ +R L+ ++
Sbjct: 284 TSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVK 343
Query: 513 KGSKKNWDHITNQKGMFCYTGLSASQ 538
G+ NWDHI NQ GMF +TGL+
Sbjct: 344 LGTPGNWDHIVNQCGMFSFTGLTPQM 369
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Escherichia coli [TaxId: 562]}
Length = 397
Score = 206 bits (524), Expect = 2e-61
Identities = 135/402 (33%), Positives = 204/402 (50%), Gaps = 50/402 (12%)
Query: 143 MMEDIK-----PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIY-EK 196
M + + P+ ++ F +DP K+NL +G Y EDG L +V EAE R+ +
Sbjct: 1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP 60
Query: 197 NLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYP 256
+ Y + G + A L +G D P K R+A +Q + GSG+L+VG FL+R++P
Sbjct: 61 HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFP 120
Query: 257 GVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQ 316
V+ PTW HV + V Y ++D TNG+ F ++ +K +P RSI+ L
Sbjct: 121 E-SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLH 179
Query: 317 TSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQ 376
HNPTG DL+ DQW + ++K R L PF D+AY G +G ++DA+++R A
Sbjct: 180 PCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGLP 238
Query: 377 LCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEI 436
++ SFSK LYGERVG SV+
Sbjct: 239 ALVSNSFSKIFSLYGERVGGLSVMCE---------------------------------- 264
Query: 437 LSDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMS 496
+ R++ QLK +R YS+PP GA++V +L+D LKA W E + M
Sbjct: 265 --------DAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMR 316
Query: 497 NRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
RI ++R+EL + + ++N+D++ NQ+GMF YTGLSA+Q
Sbjct: 317 TRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQ 358
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 202 bits (513), Expect = 8e-60
Identities = 126/401 (31%), Positives = 185/401 (46%), Gaps = 49/401 (12%)
Query: 143 MMEDIK-----PLKQQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN 197
M E+I P+ F D P K+NLG+G Y+ E GK VL SVK+AE+ + E
Sbjct: 1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE 60
Query: 198 LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPG 257
Y I G +F + +L +G+ D R Q G+G+LRV FL +
Sbjct: 61 TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS- 119
Query: 258 VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQT 317
VK V+ P+W H + L V Y Y+D + + LDF ++ + ++
Sbjct: 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179
Query: 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377
HNPTG+D + +QW+ LA + ++ P FD AY G G ++DA LR FA +L
Sbjct: 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL-EEDAEGLRAFAAMHKEL 238
Query: 378 CLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437
+A S+SKN GLY ERV G +
Sbjct: 239 IVASSYSKNFGLYNERV-------------------------GACTLVAAD--------- 264
Query: 438 SDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSN 497
+ +R SQ+K IR YSNPP HGA +V ILS+ L+A W +E M
Sbjct: 265 --------SETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQ 316
Query: 498 RISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
RI +R+ + + +KG+ +++ I Q GMF ++GL+ Q
Sbjct: 317 RIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQ 357
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 200 bits (510), Expect = 2e-59
Identities = 111/401 (27%), Positives = 174/401 (43%), Gaps = 52/401 (12%)
Query: 143 MMEDIKPLK-----QQLKGFNKDPHPKKMNLGVGAYRGEDGKPYVLPSVKEAERRIYEKN 197
M+ ++KP + F DP K++LGVG Y+ G ++ +V AE+R+ E
Sbjct: 1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE 60
Query: 198 LDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGSLRVGTAFLERFYPG 257
YA + G+ +F K +L G+ + A + + G+G+LR P
Sbjct: 61 TTKTYAGLSGEPEFQKAMGELILGDGLKSETT---ATLATVGGTGALRQALELARMANP- 116
Query: 258 VKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFLQT 317
V+ PTW HV L V YRYFD +T G+DF GM D+ A + ++ L
Sbjct: 117 DLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHG 176
Query: 318 SSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVGQL 377
HNPTG +L+ DQW ++A ++++ P D+AY G G + DA R A + ++
Sbjct: 177 CCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEE-DAAGTRLIASRIPEV 235
Query: 378 CLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTEIL 437
+A S SKN G+Y ER G L
Sbjct: 236 LIAASCSKNFGIYRERTGCLLALCA----------------------------------- 260
Query: 438 SDPKLKAQCDETERIMSQLKILIRGFYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSN 497
E + L R YS PP HGA+IV+ +L+ P+L+A W E + + +
Sbjct: 261 -------DAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRS 313
Query: 498 RISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSASQ 538
+ +RE+L ++ D + + +GMF G + Q
Sbjct: 314 GMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQ 354
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 69.4 bits (169), Expect = 3e-13
Identities = 43/212 (20%), Positives = 72/212 (33%), Gaps = 14/212 (6%)
Query: 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243
VKEA RR + +YA G + + A+ E+ + + G S +
Sbjct: 47 EHVKEAARRALAQGK-TKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105
Query: 244 LRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMED 303
+ A L+ PG V +P W + + V + D +
Sbjct: 106 N-LFQAILD---PG-DEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRA 160
Query: 304 IKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363
I R+ + S +NPTG ++ LA + + Y D Y L ++ +
Sbjct: 161 IT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLL---YEGE 214
Query: 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
FS A E +K + G R+G
Sbjct: 215 HFSPGRVAPEHTLTV--NGAAKAFAMTGWRIG 244
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 68.7 bits (167), Expect = 5e-13
Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 10/212 (4%)
Query: 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGISGSGS 243
+ EA + E+ Y G+ + + AQ ++ + + + + G S
Sbjct: 46 KHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104
Query: 244 LRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMED 303
+ A +E PG V P P W + + + + +
Sbjct: 105 N-LMLAMIE---PG-DEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQA 159
Query: 304 IKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKD 363
I ++ L + + NPTG+ + D+ R +A V + L+ D Y D +
Sbjct: 160 IT---PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIY-EKILYDDAQH 215
Query: 364 AFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+ + + F+K + G RVG
Sbjct: 216 LSIGAASPEAYERSVVCSGFAKTYAMTGWRVG 247
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 67.2 bits (163), Expect = 1e-12
Identities = 39/213 (18%), Positives = 77/213 (36%), Gaps = 12/213 (5%)
Query: 184 PSVKEAERRIYEKNLDHEYANIGGDAKFCK-LAAQLAYGEDFPAFKDNRLAIVQGISGSG 242
+KE + +K L Y G + + +A +L A + ++ G + +
Sbjct: 41 QHIKEYAKEALDKGL-THYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAF 99
Query: 243 SLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMME 302
+ +AFL+ G + V PTP + + + ++ L+ +
Sbjct: 100 LM-GLSAFLK---DG-EEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDEL-- 152
Query: 303 DIKAMPERSILFLQTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDK 362
K + +++ + S NPTG L++ ++A V + L D Y D
Sbjct: 153 -KKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFI--YDDA 209
Query: 363 DAFSLRYFAKEVGQLCLAQSFSKNMGLYGERVG 395
+S+ + FSK + G R+G
Sbjct: 210 RHYSIASLDGMFERTITVNGFSKTFAMTGWRLG 242
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 33.5 bits (76), Expect = 0.064
Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 38/190 (20%)
Query: 256 PGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYFDNKTNGLDFAGMMEDIKAMPERSILFL 315
P K V P + F ++ + + A + PE+ I +
Sbjct: 154 PESK-VVAHAPFYPV---FREQTKYFDKKGYVWA-----GNAANYVNVSN--PEQYIEMV 202
Query: 316 QTSSHNPTGVDLSEDQWRQLAVVVKQRHLYPFFDMAYLGLTSGDFDKDAFSLRYFAKEVG 375
TS +NP G+ L + + +DM Y + ++Y A E
Sbjct: 203 -TSPNNPEGL-LRHAVIKGCKSI---------YDMVY-------YWPHYTPIKYKADEDI 244
Query: 376 QLCLAQSFSKNMGLYGERVGTFSVLTPTSDETERIMSQLKILIRGFYSNPPIHGARIVTE 435
L + SK G G R G ++++ E + + L + P +
Sbjct: 245 LLF---TMSKFTGHSGSRFG-WALIKD-----ESVYNNLLNYMTKNTEGTPRETQLRSLK 295
Query: 436 ILSDPKLKAQ 445
+L + +
Sbjct: 296 VLKEVVAMVK 305
>d1npsa_ b.11.1.1 (A:) Protein S {Myxococcus xanthus [TaxId: 34]}
Length = 88
Score = 28.7 bits (64), Expect = 0.52
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 10/87 (11%)
Query: 463 FYSNPPIHGARIVTEILSDPKLKAQWFEECKGMSNRISSIREELKSKILDKGSKKNWDHI 522
+ N G ++ L +N ISS++ + + +
Sbjct: 5 VFYNEDFQGKQVD---LPPGNYTRAQLAALGIENNTISSVK------VPPGVKAILYQND 55
Query: 523 TNQKGMFCYTGLSAS-QGMSNRISSIR 548
+ ++N +SSIR
Sbjct: 56 GFAGDQIEVVANAEELGPLNNNVSSIR 82
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 497
Score = 29.9 bits (67), Expect = 0.86
Identities = 22/141 (15%), Positives = 36/141 (25%), Gaps = 18/141 (12%)
Query: 173 YRGEDGKPYVLPSVKEAERRIYEKNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRL 232
Y G D + +L +V E +YE D + L E
Sbjct: 253 YEGYDFRRTILSTVHEFGHALYELQQDERF-----MFTPIAGGVSLGIHE---------- 297
Query: 233 AIVQGISGSGSLRVGTAFLERFYPGVKTVYFPTPTWNGHVRFCTDSRLNVGAYRYF-DNK 291
Q + F+E YP +K + + + + R D
Sbjct: 298 --SQSRFWENIIGRSKEFVELIYPVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVV 355
Query: 292 TNGLDFAGMMEDIKAMPERSI 312
T + + M I
Sbjct: 356 TYNFHILLRFKLERLMVSEEI 376
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 28.5 bits (63), Expect = 1.9
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 18/100 (18%)
Query: 448 ETERIMSQLKILIRGFYSNPPIH-----------GARIVTEILSDPKLKAQWFEECKGMS 496
E ++MS ++I FYSN I +I E L+DP + K +
Sbjct: 9 EIAQLMS---LIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKL----DSGKELH 61
Query: 497 NRISSIREELKSKILDKGSKKNWDHITNQKGMFCYTGLSA 536
+ +++ I+D G + N G +G A
Sbjct: 62 INLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKA 101
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine
5'-diphospho)-2C-methyl-D-erythritol kinase IspE
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 26.6 bits (58), Expect = 5.4
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 196 KNLDHEYANIGGDAKFCKLAAQLAYGEDFPAFKDNRLAIVQGI 238
L+H + + ++ L G D P F A +G+
Sbjct: 116 VALNHLWQCGLSMDELAEMGLTL--GADVPVFVRGHAAFAEGV 156
>d1lm8v_ b.3.3.1 (V:) VHL {Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 26.7 bits (59), Expect = 5.5
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 21 ERFYPGVKTVYFPTPTWNGHVRFC 44
+ ++ P+ +G F
Sbjct: 67 DGLLVNQTELFVPSLNVDGQPIFA 90
Score = 26.7 bits (59), Expect = 5.5
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 95 ERFYPGVKTVYFPTPTWNGHVRFC 118
+ ++ P+ +G F
Sbjct: 67 DGLLVNQTELFVPSLNVDGQPIFA 90
Score = 26.7 bits (59), Expect = 5.5
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 252 ERFYPGVKTVYFPTPTWNGHVRFC 275
+ ++ P+ +G F
Sbjct: 67 DGLLVNQTELFVPSLNVDGQPIFA 90
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.2 bits (59), Expect = 5.9
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 226 AFKDNRLAIVQGISGSG-SLRVGTAFLERFYPGVKTVYFPTPT 267
F+ RL I+ G+G + R A + PT
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPT 47
>d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 78
Score = 25.2 bits (55), Expect = 7.0
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 486 AQWFEECKGMSNRISSIREELKSKI--LDKGSKKNWD 520
+WF E G S+ + L SK LD +K WD
Sbjct: 37 IEWFREKFGKDISQPSVSQILSSKYSYLDNTVEKPWD 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,300,045
Number of extensions: 112926
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 34
Length of query: 583
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 493
Effective length of database: 1,171,896
Effective search space: 577744728
Effective search space used: 577744728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)