BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14430
         (497 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F5F|A Chain A, Crystal Structure Of Heparan Sulfate 2-O-Sulfotransferase
           From Gallus Gallus As A Maltose Binding Protein Fusion
          Length = 658

 Score = 32.0 bits (71), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 217 CGNESLALNIKDFCTFSSKIWEVLSKW 243
           C  E L L I  FC  SS+ W V S+W
Sbjct: 511 CAPEKLWLQIPFFCGHSSECWNVGSRW 537


>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
          Length = 670

 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 21/139 (15%)

Query: 64  EDQDKKIKAAEEKYKVWLRDCYKSLFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPI 123
           E+    +  AE K +V+ R C               E+ ++      LM L++    + I
Sbjct: 65  ENSTASVSEAERKAQVYYRACMN-------------ETRIEELRAKPLMELIERLGGWNI 111

Query: 124 T--LSKPFPEDKLQMLIKNILSSPFYPVFVERFKEYLSFKDVIFYSFKSMSTLLSENF-- 179
           T   +K   +D LQ++  +  +SPF+ V+V    +  S  +VI    +S   L S ++  
Sbjct: 112 TGPWAKDNFQDTLQVVTAHYRTSPFFSVYVSADSKN-SNSNVIQVD-QSGLGLPSRDYYL 169

Query: 180 --VENEEILMNVLNFIKEI 196
              ENE++L   LN++ ++
Sbjct: 170 NKTENEKVLTGYLNYMVQL 188


>pdb|3VIU|A Chain A, Crystal Structure Of Purl From Thermus Thermophilus
          Length = 725

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 66  QDKKIKAAEEKYKVWLRDCY---KSLFPKLFDILFNGE--SEVQIQTFS---TLMHLVQG 117
           ++ K KA EE +  W  DC    +++  ++F +LF GE  +EV  +  +   T + + + 
Sbjct: 313 KEGKEKALEEVFGRWGLDCVPVARTIPERVFRVLFRGEVVAEVPTEALAEAPTYVRVGRE 372

Query: 118 EAKYPITLSKPFP--EDKLQMLIKNILSSP 145
           + +       P P  E   Q +++ +L+SP
Sbjct: 373 DPEVRRLRETPIPPLEADPQEVLRRLLASP 402


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,450,638
Number of Sequences: 62578
Number of extensions: 594109
Number of successful extensions: 1367
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1356
Number of HSP's gapped (non-prelim): 17
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)