Query psy14430
Match_columns 497
No_of_seqs 235 out of 582
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:39:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2154|consensus 100.0 1.5E-86 3.2E-91 678.1 37.0 480 3-497 16-504 (505)
2 KOG2038|consensus 100.0 1.3E-55 2.7E-60 470.1 28.9 440 6-473 213-761 (988)
3 COG5117 NOC3 Protein involved 100.0 2.6E-47 5.5E-52 388.1 34.4 427 3-441 136-654 (657)
4 KOG2153|consensus 100.0 5.3E-42 1.2E-46 362.5 30.0 426 3-440 190-700 (704)
5 COG5593 Nucleic-acid-binding p 100.0 4E-37 8.6E-42 318.1 26.0 441 4-472 101-607 (821)
6 PF03914 CBF: CBF/Mak21 family 100.0 4.6E-38 1E-42 293.0 12.9 151 286-436 1-164 (164)
7 PF07540 NOC3p: Nucleolar comp 99.7 1.2E-16 2.6E-21 135.3 6.8 87 2-88 3-95 (95)
8 KOG2153|consensus 97.9 2.7E-05 5.9E-10 84.7 7.1 107 342-469 578-686 (704)
9 PTZ00429 beta-adaptin; Provisi 90.6 39 0.00084 39.3 24.3 415 4-488 158-609 (746)
10 KOG1059|consensus 71.9 2E+02 0.0043 33.3 21.4 37 81-121 179-215 (877)
11 PF05918 API5: Apoptosis inhib 70.9 1.9E+02 0.004 32.6 21.6 60 88-156 60-122 (556)
12 KOG1058|consensus 61.1 3E+02 0.0066 32.1 15.6 98 286-387 333-434 (948)
13 PF12717 Cnd1: non-SMC mitotic 42.0 2.9E+02 0.0063 25.7 10.9 53 88-147 26-78 (178)
14 PF14500 MMS19_N: Dos2-interac 40.2 2.7E+02 0.0059 28.0 10.5 110 270-381 41-156 (262)
15 PF08569 Mo25: Mo25-like; Int 39.4 3.6E+02 0.0077 28.3 11.5 86 9-119 155-241 (335)
16 PF14228 MOR2-PAG1_mid: Cell m 36.8 6.4E+02 0.014 31.0 14.3 243 105-380 488-759 (1120)
17 PF01602 Adaptin_N: Adaptin N 36.6 5.7E+02 0.012 27.5 20.3 132 247-381 353-486 (526)
18 PF08167 RIX1: rRNA processing 35.7 1E+02 0.0022 28.6 6.3 80 304-383 64-148 (165)
19 KOG1059|consensus 31.4 1E+02 0.0022 35.5 6.2 61 85-145 334-404 (877)
20 PF10508 Proteasom_PSMB: Prote 30.7 7.6E+02 0.016 27.2 14.0 59 85-146 75-133 (503)
21 KOG1077|consensus 27.3 2.2E+02 0.0048 32.9 7.8 184 231-440 91-333 (938)
22 PF10979 DUF2786: Protein of u 26.1 1.4E+02 0.003 21.7 4.1 35 347-381 3-39 (43)
23 KOG1062|consensus 24.8 3.7E+02 0.0081 31.5 9.1 97 90-197 353-454 (866)
24 TIGR03092 SASP_sspI small, aci 22.5 91 0.002 24.8 2.8 45 250-300 2-46 (65)
25 PF14098 SSPI: Small, acid-sol 21.6 99 0.0021 24.7 2.8 45 250-300 3-47 (65)
26 PF04499 SAPS: SIT4 phosphatas 21.5 5.1E+02 0.011 28.5 9.4 117 257-382 21-152 (475)
27 PF04388 Hamartin: Hamartin pr 20.8 7.7E+02 0.017 28.4 11.0 53 86-143 69-121 (668)
No 1
>KOG2154|consensus
Probab=100.00 E-value=1.5e-86 Score=678.10 Aligned_cols=480 Identities=31% Similarity=0.449 Sum_probs=424.6
Q ss_pred chHHHHHHHHHHhhCccccccHHHHHHhhccCCC-cHHHHHHHHHHHHHHHhhcCCCCCCcchhhhhhhHHHHHHHHHHH
Q psy14430 3 GQINLKKKINEFLSNRKYSNNLIEILACLDDVNK-VKPNTLLGIQRLFVELLKKHAMSSQTSEDQDKKIKAAEEKYKVWL 81 (497)
Q Consensus 3 ~k~~i~~l~~~ile~~~n~n~l~~Ll~~~~~~~~-~~~~a~~sL~~vF~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~wL 81 (497)
++..++...+.|+.+...+|+..++...++++.+ ..+.+..+++++|..++.+|.+..+ ..++.....++|..|+
T Consensus 16 ~~~~l~~~~nsll~s~~e~~~~~d~~~~l~~E~p~~~~~~~~~~~~~f~~ll~~gll~~P----s~~ks~~~~~~~k~w~ 91 (505)
T KOG2154|consen 16 TKKALQSLLNSLLTSRSEINNLPDLLTFLEDETPKNFVVAVALSVQSFFKLLLRGLLPRP----SSTKSEDGEEKFKNWL 91 (505)
T ss_pred HHHHHHhhhhhhhhHHHhhccchhhhhhhcccCchhHHHHHHHHHHHHHHHHHcCCCCCC----chhcccchHHHHHHHH
Confidence 3566778888899988899999999999887776 6778888999999999999987532 2223333448999999
Q ss_pred HHHHHHHHHHHHHhhccCccc-hHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCCchhHHHHHHHhhhc
Q psy14430 82 RDCYKSLFPKLFDILFNGESE-VQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFYPVFVERFKEYLSF 160 (497)
Q Consensus 82 ~~~Y~~~~~~L~~~~~~~~~~-~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~~~~~i~~~~e~~~~ 160 (497)
+.+|.+|+..|.+++.+.... .+..++...|+|.+.++.|...+...||+.+|+.++..|++++ .++..|.+...|
T Consensus 92 r~~y~e~~~kL~eils~~s~e~l~l~~l~~~~ql~~~e~l~~~~~~g~fp~~~f~~l~~~LisSd---v~it~f~e~~~~ 168 (505)
T KOG2154|consen 92 RKKYEEFVKKLLEILSSQSFEDLGLSGLLLGTQLEKVESLHGIAENGGFPNSIFHRLLDALISSD---VDITIFLENVGY 168 (505)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhcccccccccCCcHHHHHHHHHHHhccc---ccHHHHHHhccc
Confidence 999999999999999876533 4778888889999999998777667899999999999999993 467777666677
Q ss_pred CChHHHHHHHHHHHh----hhcccchHHHHHHHHHHhcccCCCCCccccccchhhhhhhccc-ccchhcchHHHHhHHHH
Q psy14430 161 KDVIFYSFKSMSTLL----SENFVENEEILMNVLNFIKEIPIPNNKEKLFPAEAKSEEFLCG-NESLALNIKDFCTFSSK 235 (497)
Q Consensus 161 ~dv~~~~~~~l~~~l----~~~~~~~~~~~~n~l~lL~~l~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 235 (497)
.|.+|..+...-+.+ .+.....+....|.+.+++.+++|...... ..++.. .+++..+++++|+.|+.
T Consensus 169 t~k~f~~~~~~~~~~~s~~~q~~~Dp~v~~~N~~~~ls~v~~p~~~~S~-------~~~~~~~~p~~~~~~~~~~k~f~~ 241 (505)
T KOG2154|consen 169 TDKYFKYFDITLTQVRSVVPQHPTDPPVIANNELEILSLVSLPLSVSST-------SSYVLEPIPKQTENEKQIRKSFQN 241 (505)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCchhhcchHHHhhhccCCCCcccH-------hhhccccCccccccHHHHHHHHHH
Confidence 888888777543333 322233567778999999999988764311 223333 35666888899999999
Q ss_pred HHHHHhccCCCChhHHHHHHHHhhhhhhccCCCchhhHHHHHHHhc-CChhHHHHHHHHHHHHHhhcCCCchhHHHHHHh
Q psy14430 236 IWEVLSKWKGHTSESTKLLLMVLIDKLMYYHSNPIVITDFLMNALS-FKGPIAVLALQGMVNLVRQYNLEYPNIYDKLYA 314 (497)
Q Consensus 236 ~w~~~l~~~~l~~~l~~~vL~~l~~~~~p~~~~p~~l~Dfl~~~~~-~~~~~sllaL~~lF~L~~~~nld~~~FY~~LY~ 314 (497)
+|+++++.+ ++.++|++||.++++||+||+..|..++|||+|+|| .||.+|++||+|||.||++||++||+||.+||+
T Consensus 242 ~Wls~l~~~-ls~~lykkil~vih~rvip~l~~P~kl~DFLtdsyd~~~g~vslLALngLF~Lm~khNleYP~FY~KLY~ 320 (505)
T KOG2154|consen 242 MWLSSLNGE-LSLKLYKKILLVIHKRVIPHLISPTKLMDFLTDSYDDIGGVVSLLALNGLFILMTKHNLEYPDFYEKLYA 320 (505)
T ss_pred HHHHHhcCc-CcHHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHhccCCchhHHHHhHHHHHHHHcCCCCchHHHHHHH
Confidence 999999999 999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred hhCCCccccchhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcccccccccCcccCC
Q psy14430 315 LLEPNIFYTKYKARLFYLTDLLMMSTHLPEGLVASFIKRLSRLCLTAPPQDIAIMIYLIGNLVLRHKGLTILFQNSDATM 394 (497)
Q Consensus 315 lL~p~~~~~~~r~~~l~L~dlflss~~~~~~rvaAFiKRL~~lsL~~pp~~~~~~L~li~~Ll~~~p~l~~Ll~~~~~~~ 394 (497)
|++|+++|.+||+|||||+|+|++|+|+|++.||||+|||+|+||.+||.+++.+++||+||++|||+|+.|+|++...+
T Consensus 321 Ll~Pslfh~KyRarff~L~D~FLSSTHLpa~LvAsFlKrLaRlaL~APpeA~~~vipfI~Nll~rHp~c~~lvhr~~~~~ 400 (505)
T KOG2154|consen 321 LLNPSLFHVKYRARFFRLADLFLSSTHLPAYLVASFLKRLARLALEAPPEAIVIVIPFICNLLRRHPNCQPLVHRSHALS 400 (505)
T ss_pred hcCchHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHhCCchhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCCCCCCCCCCCCCCCccchhhHHHhccCCChhHHHHHHHhhCCCCCCccCcccccCCCHHHHHHHHHhccCC-CCc
Q psy14430 395 LEDDPFDAKQEDPYHTNALKSSLWEIKMLQNHPLYTVNVPARFINNPLPNVEWDLGNYLEVNYDEIFNKEFKKKQK-NIS 473 (497)
Q Consensus 395 ~~~~~y~~~~~dP~~snA~~s~LWEL~~L~~HyhP~V~~~A~~l~~~~~~~~~~~~~~ld~~~~~~~~~e~~~~~k-~~~ 473 (497)
..+||||+++.||..|+|++||||||.+||.||||+|+..|+.+.+++++++|+++|++|++|..++|.|++++.| .+|
T Consensus 401 ~~~Dpfd~~EtDP~ks~ALeSSLWEL~~Lq~Hy~p~Va~~A~~~~q~~~k~ef~~ed~ld~~y~~l~d~el~~kgk~~p~ 480 (505)
T KOG2154|consen 401 LYDDPFDNDETDPKKSGALESSLWELELLQTHYHPEVAKAASFFNQSLYKPEFGLEDGLDSKYSVLQDGELSRKGKRFPP 480 (505)
T ss_pred CCCCCCCCCCCChhhhhhHHHHHHHHHHHHHhhcHHHHHHHHHHhccCccccccCcchhhhhhHHhhcchhhcccCCCCC
Confidence 6779999999999999999999999999999999999999999999999999999999999999999999999998 577
Q ss_pred ccccCCCCCCCCCccccccccccC
Q psy14430 474 TNFEKPSDMFQPTVTKLFDHFSLV 497 (497)
Q Consensus 474 l~~~~~~~~~~~~~~~~~~~w~~~ 497 (497)
++|+++++++++.++..+++|+++
T Consensus 481 lefe~~t~~~g~~~e~~s~~~~li 504 (505)
T KOG2154|consen 481 LEFERRTGLGGRFHELSSKSNVLI 504 (505)
T ss_pred cccccccccCCchhhHHHhhhccC
Confidence 999999999999999999999875
No 2
>KOG2038|consensus
Probab=100.00 E-value=1.3e-55 Score=470.06 Aligned_cols=440 Identities=15% Similarity=0.197 Sum_probs=333.3
Q ss_pred HHHHHHHHHhhCcc-ccccHHHHHHhhccCCC-cHHHHHHHHHHHHHH-HhhcCCCCCCcchhh-------hhhhHHHHH
Q psy14430 6 NLKKKINEFLSNRK-YSNNLIEILACLDDVNK-VKPNTLLGIQRLFVE-LLKKHAMSSQTSEDQ-------DKKIKAAEE 75 (497)
Q Consensus 6 ~i~~l~~~ile~~~-n~n~l~~Ll~~~~~~~~-~~~~a~~sL~~vF~~-ll~~~~l~~~~~~~~-------~~~~~~~~~ 75 (497)
.|..+.=.|.+||- |...|-.|+.++..+.. .+..++-+|..+|-. ++|..+|++-...+. .....-...
T Consensus 213 kitA~~LlvqesPvh~lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~W 292 (988)
T KOG2038|consen 213 KITAMTLLVQESPVHNLKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMW 292 (988)
T ss_pred hhHHHHHhhcccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHH
Confidence 45666667888999 99999999999988765 567789999999987 889888876211111 112223456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCCc-----hhH
Q psy14430 76 KYKVWLRDCYKSLFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFY-----PVF 150 (497)
Q Consensus 76 ~~~~wL~~~Y~~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~~-----~~~ 150 (497)
.||..|+..|++|++.|+.+.+++...++..||+++..||...++++ ++++..+||+|++++.. ..+
T Consensus 293 yfE~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE--------~~LL~~lVNKlGDpqnKiaskAsyl 364 (988)
T KOG2038|consen 293 YFEHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE--------NNLLVLLVNKLGDPQNKIASKASYL 364 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH--------HHHHHHHHHhcCCcchhhhhhHHHH
Confidence 78888999999999999999999988899999999999999999986 89999999999998765 233
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHhhhccc-----------------------chHHHHHHHHHHhcccCCCCCcccccc
Q psy14430 151 VERFKEYLSFKDVIFYSFKSMSTLLSENFV-----------------------ENEEILMNVLNFIKEIPIPNNKEKLFP 207 (497)
Q Consensus 151 i~~~~e~~~~~dv~~~~~~~l~~~l~~~~~-----------------------~~~~~~~n~l~lL~~l~~~~~~~~l~~ 207 (497)
+..+ ..+|+.++..++.+|.+++.+++. +...++..+|+++..+......+.-
T Consensus 365 L~~L--~~~HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l~~~~~~d~~-- 440 (988)
T KOG2038|consen 365 LEGL--LAKHPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTLVGKKDKDNR-- 440 (988)
T ss_pred HHHH--HhhCCcceeehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHHHHhhhhhhh--
Confidence 3333 346666666666666655544331 2333444445555544322221100
Q ss_pred chhhhhhhcccccchhcchHHHHhHHHHHHHHHhccCCCChhHHHHHHHHhhhhhhccCCCchhhHHHHHHHh-------
Q psy14430 208 AEAKSEEFLCGNESLALNIKDFCTFSSKIWEVLSKWKGHTSESTKLLLMVLIDKLMYYHSNPIVITDFLMNAL------- 280 (497)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~l~~~l~~~vL~~l~~~~~p~~~~p~~l~Dfl~~~~------- 280 (497)
++.+.+-.+ ++ +.-+..-+.+=... -. ++++.+++++|+| +||||||...+....+-.++++
T Consensus 441 --k~~k~~~k~-kk-----s~k~~k~e~~~~e~-~~-e~nsrllSAlLTG-vNRAfPfaq~~ddk~~~~~~tLFkl~Hss 509 (988)
T KOG2038|consen 441 --KDDKGAAKK-KK-----SNKKDKKEEVSTES-PI-ELNSRLLSALLTG-VNRAFPFAQTADDKLEEQMKTLFKLTHSS 509 (988)
T ss_pred --hcccchhhc-cc-----ccccchhhhhcccc-hh-hhhHHHHHHHHhc-ccccCCcccCchHHHHHHhHHHHHHHhhc
Confidence 000000000 00 00000001100000 01 1678899999999 8999999998875555554443
Q ss_pred cCChhHHHHHHHHHHHHHhhcCCCchhHHHHHH-hhhCCCccccchhhhHHHHHHHHHhc-CCCChHHHHHHHHHHHHHh
Q psy14430 281 SFKGPIAVLALQGMVNLVRQYNLEYPNIYDKLY-ALLEPNIFYTKYKARLFYLTDLLMMS-THLPEGLVASFIKRLSRLC 358 (497)
Q Consensus 281 ~~~~~~sllaL~~lF~L~~~~nld~~~FY~~LY-~lL~p~~~~~~~r~~~l~L~dlflss-~~~~~~rvaAFiKRL~~ls 358 (497)
|++ +|+|||++|||++....+.++|||++|| +||||+++.++..+ ++|+.+|.+. .+.++.||+||+|||+|+|
T Consensus 510 NFN--TsVQaLmLlfQvs~~~~~vSDRyY~aLY~kLLdP~l~~sSKq~--m~LnLlykslK~D~ni~RV~AFvKRlLQVa 585 (988)
T KOG2038|consen 510 NFN--TSVQALMLLFQVSKKNDYVSDRYYRALYRKLLDPRLMNSSKQA--MFLNLLYKSLKEDINIQRVRAFVKRLLQVA 585 (988)
T ss_pred ccc--hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCcccCchHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 666 9999999999999999999999999999 99999999988544 5567788888 8899999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHhcccccccccCccc----------------------------------------------
Q psy14430 359 LTAPPQDIAIMIYLIGNLVLRHKGLTILFQNSDA---------------------------------------------- 392 (497)
Q Consensus 359 L~~pp~~~~~~L~li~~Ll~~~p~l~~Ll~~~~~---------------------------------------------- 392 (497)
++.+|+++||++.++++|++..|.++.|+.+.+.
T Consensus 586 ~~q~P~~i~G~l~Llsel~Karp~l~~lv~~~~~~D~e~dv~~~~e~DD~deek~vd~Dke~~~vdk~~~e~~~~e~ds~ 665 (988)
T KOG2038|consen 586 VQQQPPFICGILFLLSELLKARPTLRKLVVNSEDIDPEEDVVAQMENDDVDEEKKVDLDKEGKEVDKNGVEEEVEEEDSV 665 (988)
T ss_pred HhcCCchhHhHHHHHHHHHHhcchHHHHhhCCcccChhhhhhhhhcccccchhhhccccccceeeccccccccccccccc
Confidence 9999999999999999999999999999842211
Q ss_pred ----------------CCCCCCCCCCCCCCCCCCCCCccchhhHHHhccCCChhHHHHHHHhhCCCCCCccCcccccCCC
Q psy14430 393 ----------------TMLEDDPFDAKQEDPYHTNALKSSLWEIKMLQNHPLYTVNVPARFINNPLPNVEWDLGNYLEVN 456 (497)
Q Consensus 393 ----------------~~~~~~~y~~~~~dP~~snA~~s~LWEL~~L~~HyhP~V~~~A~~l~~~~~~~~~~~~~~ld~~ 456 (497)
+....++|||..|||.+|||..||||||..|.+||||+|+.+|+.+.+|- ...|.++|+-|+|
T Consensus 666 s~k~E~~~~~~~d~~~~~~~~~~YD~r~R~P~f~nAd~tslWEl~~ls~HfHPSVa~~Akall~G~-~i~y~g~~L~dfT 744 (988)
T KOG2038|consen 666 SEKKEDLDKKKVDPIGARGAKTPYDPRKRNPLFCNADHTSLWELLLLSKHFHPSVATFAKALLEGE-EIQYGGPPLNDFT 744 (988)
T ss_pred ccchhhhhhhhccccccccCCCCCCcccCCccccCCccchHHHHHHHhhhcCchHHHHHHHHhcCc-eeecCCCchhHHH
Confidence 01244689999999999999999999999999999999999999999994 5789999999999
Q ss_pred HHHHHHHHHhccCCCCc
Q psy14430 457 YDEIFNKEFKKKQKNIS 473 (497)
Q Consensus 457 ~~~~~~~e~~~~~k~~~ 473 (497)
+.+|+|++++|..|++.
T Consensus 745 L~~FLDrF~yRnPK~~t 761 (988)
T KOG2038|consen 745 LMAFLDRFAYRNPKQVT 761 (988)
T ss_pred HHHHHHHHHhcCccccc
Confidence 99999999999988654
No 3
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.6e-47 Score=388.07 Aligned_cols=427 Identities=15% Similarity=0.162 Sum_probs=351.3
Q ss_pred chHHHHHHHHHHhhCcc-ccccHHHHHHhhccCCC-cHHHHHHHHHHHHHHHhhcCCCCCCcchh---hhhhhHHHHHHH
Q psy14430 3 GQINLKKKINEFLSNRK-YSNNLIEILACLDDVNK-VKPNTLLGIQRLFVELLKKHAMSSQTSED---QDKKIKAAEEKY 77 (497)
Q Consensus 3 ~k~~i~~l~~~ile~~~-n~n~l~~Ll~~~~~~~~-~~~~a~~sL~~vF~~ll~~~~l~~~~~~~---~~~~~~~~~~~~ 77 (497)
.|+.|+.++.+|+|.|+ |...+..+.+|+++..+ +++..++||.+||++|||||+|||+++++ +.++++...+.|
T Consensus 136 ~Ke~ia~~~tki~EePeeNl~~~~~vf~mi~S~~~~~kk~s~LsLl~VFk~IIPgYkIRpL~e~Eq~~K~skev~~l~~y 215 (657)
T COG5117 136 EKERIASICTKIIEEPEENLGMMEEVFSMITSMAEKAKKVSYLSLLKVFKAIIPGYKIRPLKEEEQMVKDSKEVLHLKDY 215 (657)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHhCccccccccchHHhhhhhHHHHHHHHHH
Confidence 47899999999999999 99999999999999888 67889999999999999999999986654 445899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCc------cchHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCCc---h
Q psy14430 78 KVWLRDCYKSLFPKLFDILFNGE------SEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFY---P 148 (497)
Q Consensus 78 ~~wL~~~Y~~~~~~L~~~~~~~~------~~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~~---~ 148 (497)
++.|...|..|++.|...+++.. .++..+|..++|+|++.. .||||+..+|..+++.++.+..+ .
T Consensus 216 eqsLl~~Y~~yi~tl~~~~k~~S~~~~~Q~SL~~vA~~~~~eli~~a------sHFN~~~kvfsl~lR~i~~~t~rp~s~ 289 (657)
T COG5117 216 EQSLLRWYTSYIKTLVDDVKDESTLDETQSSLYQVAYISLCELIQHA------SHFNCTDKVFSLVLRGILGTTKRPVSM 289 (657)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHHHHHHHHh------hhcCcHHHHHHHHHHHhhCCCCCchHH
Confidence 99999999999999999999762 245689999999999865 47999999999999999987544 5
Q ss_pred hHHHHHHH-hh--hcCChHHHHHHHHHHHhhhcccchHHHHHHHHHHhcccCCCCCcccccc------c-hhhhhhhccc
Q psy14430 149 VFVERFKE-YL--SFKDVIFYSFKSMSTLLSENFVENEEILMNVLNFIKEIPIPNNKEKLFP------A-EAKSEEFLCG 218 (497)
Q Consensus 149 ~~i~~~~e-~~--~~~dv~~~~~~~l~~~l~~~~~~~~~~~~n~l~lL~~l~~~~~~~~l~~------~-~~~~~~~~~~ 218 (497)
.||++|+. +. .-|.+.+..++..+.+.+.++....+++.+++..++.+.......+.|. + +|++..|+++
T Consensus 290 ~ii~t~ks~leeD~~G~~sl~~~~i~~~l~k~rN~~vle~vld~~ls~n~L~D~~~~~k~w~~n~~~~k~~KKd~~hlsK 369 (657)
T COG5117 290 LIIDTIKSKLEEDCTGKTSLVATVIDQMLDKERNPLVLEYVLDIPLSDNSLRDEEKARKYWEANKPVSKREKKDIFHLSK 369 (657)
T ss_pred HHHHHHHHHhcccccCceeEEeehHHHHHHhhhCchhHHHHHhccchhhhhhhhhhhHHhhhcCCcchhhhhcchhhhhH
Confidence 68999977 44 3466788888888999988877777777777655555542221112222 1 2344456666
Q ss_pred ccchhc------------------------chHHHHhHHHHHHHHHhccCCCChhHHHHHHHHhhhhhhccCCCchhhHH
Q psy14430 219 NESLAL------------------------NIKDFCTFSSKIWEVLSKWKGHTSESTKLLLMVLIDKLMYYHSNPIVITD 274 (497)
Q Consensus 219 ~~~~~~------------------------~~~~~~~~~~~~w~~~l~~~~l~~~l~~~vL~~l~~~~~p~~~~p~~l~D 274 (497)
+.++.+ ++++..++.+.+|+.+|+.. -.++++.||+||++ |.++.||+.++|
T Consensus 370 K~RK~~KE~~~I~~Emr~ae~i~~a~e~eknqseIlkiif~~Yf~vLk~~--~k~lig~vleGl~k--~~~~~n~eflGD 445 (657)
T COG5117 370 KLRKIEKERLRIQSEMRDAEDIEEAIEEEKNQSEILKIIFRLYFMVLKGD--RKDLIGYVLEGLVK--YRKIINPEFLGD 445 (657)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHH--HHhhcCHHHHhH
Confidence 444332 33456778888999999977 57799999999999 999999999999
Q ss_pred HHHHHhc---------CC---hhHHHHHHHHHHHHHhh-----cCCCchhHHHHHHhhhCCCccc----cchhh------
Q psy14430 275 FLMNALS---------FK---GPIAVLALQGMVNLVRQ-----YNLEYPNIYDKLYALLEPNIFY----TKYKA------ 327 (497)
Q Consensus 275 fl~~~~~---------~~---~~~sllaL~~lF~L~~~-----~nld~~~FY~~LY~lL~p~~~~----~~~r~------ 327 (497)
||..++. .+ .+-+++|+.++|.+++. -|+|.+.|...||+++.|-... .++|.
T Consensus 446 ~Levl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i~S~t~ygk~n~Dl~~fVd~lY~~v~p~~l~pD~dLn~k~~RL~DP 525 (657)
T COG5117 446 LLEVLYELLNDNPLDKISSDARRQALLCILTAFEIASATLYGKENYDLGGFVDLLYSMVHPMNLEPDADLNLKIKRLKDP 525 (657)
T ss_pred HHHHHHHHHcCCchhhhhHHHHHHHHHHhhHHHHHhhhhhhhhccccHHHHHHHHHHHhCcccCCcchhhhhhhhhhcCC
Confidence 9998871 22 25789999999999975 3999999999999996542221 12221
Q ss_pred ----------------hHHHHHH-HHHhcCCCChHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcccccccccCc
Q psy14430 328 ----------------RLFYLTD-LLMMSTHLPEGLVASFIKRLSRLCLTAPPQDIAIMIYLIGNLVLRHKGLTILFQNS 390 (497)
Q Consensus 328 ----------------~~l~L~d-lflss~~~~~~rvaAFiKRL~~lsL~~pp~~~~~~L~li~~Ll~~~p~l~~Ll~~~ 390 (497)
..+.+.+ +|+.+++....|..+|-|||+-+|.+.|..++.+++.++..|+.|||.|..+..++
T Consensus 526 ~~~~~~~~VN~tt~~e~LlK~~~~~Ffksk~~~~~r~~~f~krl~~c~s~~pe~~~~ail~~~~kl~~rys~~s~l~~sE 605 (657)
T COG5117 526 DAPSKPFVVNATTDNEELLKIVRLLFFKSKQPVHRRHVIFKKRLLYCCSRSPEEFKGAILDISAKLDIRYSDCSNLKCSE 605 (657)
T ss_pred cccccCccccccccHHHHHHHHHHHheeccCchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhhhhccCccCch
Confidence 1233332 47788999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCccchhhHHHhccCCChhHHHHHHHhhCC
Q psy14430 391 DATMLEDDPFDAKQEDPYHTNALKSSLWEIKMLQNHPLYTVNVPARFINNP 441 (497)
Q Consensus 391 ~~~~~~~~~y~~~~~dP~~snA~~s~LWEL~~L~~HyhP~V~~~A~~l~~~ 441 (497)
.+ +|+|.|+|...||..+|...+.|||-.+|.+||+|.|++-|+.+...
T Consensus 606 ~~--ig~g~~~~~~~nP~~SN~~tA~l~e~fLlk~hy~P~Vsq~~k~L~~~ 654 (657)
T COG5117 606 FD--IGAGNVDSIPSNPDLSNSSTAVLFEYFLLKQHYSPAVSQSAKELLKS 654 (657)
T ss_pred hh--cCCcccccCCCCcccCCchhHHHHHHHHHHhhcCHHhHHHHHHHHhh
Confidence 87 89999999999999999999999999999999999999999998763
No 4
>KOG2153|consensus
Probab=100.00 E-value=5.3e-42 Score=362.50 Aligned_cols=426 Identities=17% Similarity=0.153 Sum_probs=329.8
Q ss_pred chHHHHHHHHHHhhCcc-ccccHHHHHHhhccCCC-cHHHHHHHHHHHHHHHhhcCCCCCCcchhhh---hhhHHHHHHH
Q psy14430 3 GQINLKKKINEFLSNRK-YSNNLIEILACLDDVNK-VKPNTLLGIQRLFVELLKKHAMSSQTSEDQD---KKIKAAEEKY 77 (497)
Q Consensus 3 ~k~~i~~l~~~ile~~~-n~n~l~~Ll~~~~~~~~-~~~~a~~sL~~vF~~ll~~~~l~~~~~~~~~---~~~~~~~~~~ 77 (497)
-|+.|+.+++.|+|+|+ |+..|.++.+|+++.++ +.+.+++||..||++|+|+|++||+++.++. .+++...+.|
T Consensus 190 ~K~kIA~l~s~llenPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~y 269 (704)
T KOG2153|consen 190 KKEKIASLCSKLLENPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREY 269 (704)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHH
Confidence 47889999999999999 99999999999999999 6788999999999999999999998777665 6999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCc--c----chHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCCc--hh
Q psy14430 78 KVWLRDCYKSLFPKLFDILFNGE--S----EVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFY--PV 149 (497)
Q Consensus 78 ~~wL~~~Y~~~~~~L~~~~~~~~--~----~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~~--~~ 149 (497)
++.|.++|+.|++.|++++++.. . +...+|..|+|.|+... +||||+.+++..+|..+.++... ..
T Consensus 270 E~~Ll~~Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~------pHFN~~~kiv~l~vr~in~~~~~~s~~ 343 (704)
T KOG2153|consen 270 EQALLKQYKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAV------PHFNLRQKIVKLVVRLINDPGRPVSSG 343 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhh------hhccHHHHHHHHHHHhhcCCCCchHHH
Confidence 99999999999999999999762 1 23469999999999744 56999999999999876666343 68
Q ss_pred HHHHHHHhhhc---CChHHHHHHHHHHHhhhcc-cchHHHHHHHHHH-hcccCCCCCcc-ccccc----hhhhhhhcccc
Q psy14430 150 FVERFKEYLSF---KDVIFYSFKSMSTLLSENF-VENEEILMNVLNF-IKEIPIPNNKE-KLFPA----EAKSEEFLCGN 219 (497)
Q Consensus 150 ~i~~~~e~~~~---~dv~~~~~~~l~~~l~~~~-~~~~~~~~n~l~l-L~~l~~~~~~~-~l~~~----~~~~~~~~~~~ 219 (497)
||++|+.++.. +.+...+++.++.+++..+ .+.++++..++++ +.+...+.+.+ ...++ .+.+...++++
T Consensus 344 ~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK 423 (704)
T KOG2153|consen 344 CIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEVLPDMITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKK 423 (704)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccchhhHHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHH
Confidence 99999886543 5599999999999998765 4566666555555 33333332221 11111 01122223332
Q ss_pred cch------------------------hcchHHHHhHHHHHHHHHhccCCCChhHHHHHHHHhhhhhhccCCCchhhHHH
Q psy14430 220 ESL------------------------ALNIKDFCTFSSKIWEVLSKWKGHTSESTKLLLMVLIDKLMYYHSNPIVITDF 275 (497)
Q Consensus 220 ~~~------------------------~~~~~~~~~~~~~~w~~~l~~~~l~~~l~~~vL~~l~~~~~p~~~~p~~l~Df 275 (497)
.++ ..++++..++.+.+|+.+|+.. ...++++||+|+++ |.|+.|++.+.|+
T Consensus 424 ~RK~kKe~~ki~rE~reaea~e~aeek~k~~sEiLkiVFtiYFrILkn~--~~tll~~vlEGlak--f~h~invef~~dl 499 (704)
T KOG2153|consen 424 ERKRKKERNKIEREMREAEAEESAEEKMKKQSEILKIVFTIYFRILKND--RYTLLGAVLEGLAK--FAHLINVEFLGDL 499 (704)
T ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHhhHHH--HhhhccHHHhhhH
Confidence 111 1133456677788999999987 33399999999999 9999999888887
Q ss_pred HHHHh----c--CChhHHHHHHHHHHHHHhhc----CCCchhHHHHHHhhhCCCccccchh--hhHHHHHHHH-------
Q psy14430 276 LMNAL----S--FKGPIAVLALQGMVNLVRQY----NLEYPNIYDKLYALLEPNIFYTKYK--ARLFYLTDLL------- 336 (497)
Q Consensus 276 l~~~~----~--~~~~~sllaL~~lF~L~~~~----nld~~~FY~~LY~lL~p~~~~~~~r--~~~l~L~dlf------- 336 (497)
+...- + .+.+.+++|++++|.+++++ |+|+..||++||+++-|-.....+. .+.+|++|..
T Consensus 500 l~vlk~ll~d~~~~~re~l~cvqtaf~IlS~qg~~lniD~~~fv~~lY~~l~~~~~~~~~~~~~~ilr~~d~~~~k~r~~ 579 (704)
T KOG2153|consen 500 LKVLKELLEDIELSYREALLCVQTAFCILSGQGEKLNIDLGKFVDHLYKMLFPMNLGPDDDGFAIILRLLDPLLIKIRKP 579 (704)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccceeeccCHHHHHHHHHHHhcccccCCCcchHHHHHHHhhHhhhhhhhh
Confidence 76554 2 25578999999999999975 8999999999998875522211111 2345555543
Q ss_pred -------------------HhcCCCChHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcccccccccCcccCCCCC
Q psy14430 337 -------------------MMSTHLPEGLVASFIKRLSRLCLTAPPQDIAIMIYLIGNLVLRHKGLTILFQNSDATMLED 397 (497)
Q Consensus 337 -------------------lss~~~~~~rvaAFiKRL~~lsL~~pp~~~~~~L~li~~Ll~~~p~l~~Ll~~~~~~~~~~ 397 (497)
..++-++.+|..+|.||+.-++.+.|...+++.++|+-.++-||+.+..++..+.. .|.
T Consensus 580 v~~~~~~~~~Ll~~~~h~~~~s~~~s~~~~~~fsk~~~~~~~~~pe~~s~a~~al~e~~l~ry~~~~~~~a~~~~--~G~ 657 (704)
T KOG2153|consen 580 VVNVITKMERLLKCSLHVFFNSKLISKYRDIEFSKRLNLLDSETPEYCSIASLALFEKLLLRYHPISRLMASEIA--IGV 657 (704)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhhhhhhhhhccCccccccccHHHHHHHHHhcchHHHHHHHHHh--hcC
Confidence 33344666677777777777777778888889999999999998888878777765 799
Q ss_pred CCCCCCCCCCCCCCCCccchhhHHHhccCCChhHHHHHHHhhC
Q psy14430 398 DPFDAKQEDPYHTNALKSSLWEIKMLQNHPLYTVNVPARFINN 440 (497)
Q Consensus 398 ~~y~~~~~dP~~snA~~s~LWEL~~L~~HyhP~V~~~A~~l~~ 440 (497)
|.|.+.+.+|+.+|..++.|||-.+++.||+|.|..-++.+..
T Consensus 658 ~~~~~~a~~p~~s~~sa~~L~~~~~~~~~~~P~v~~~~kql~~ 700 (704)
T KOG2153|consen 658 GATGEGALPPELSNLSAAELFEQDLLEMHYNPTVPLSLKQLYK 700 (704)
T ss_pred CccCcCCCCccccCchHHHHhhhHHHHhccCCCCCchHHHHHH
Confidence 9999999999999999999999999999999999988877654
No 5
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-37 Score=318.14 Aligned_cols=441 Identities=16% Similarity=0.153 Sum_probs=334.9
Q ss_pred hHHHHHHHHHHhhCcc-ccccHHHHHHhhccCCC-cHHHHHHHHHHHHHH-HhhcCCCCC---Ccchhh-hhhhHHHHHH
Q psy14430 4 QINLKKKINEFLSNRK-YSNNLIEILACLDDVNK-VKPNTLLGIQRLFVE-LLKKHAMSS---QTSEDQ-DKKIKAAEEK 76 (497)
Q Consensus 4 k~~i~~l~~~ile~~~-n~n~l~~Ll~~~~~~~~-~~~~a~~sL~~vF~~-ll~~~~l~~---~~~~~~-~~~~~~~~~~ 76 (497)
+..|..+.=.|.++|- |..++..|++.++.+.. +.--++-+|-.+|-. |+|..++|- ++...+ -.+..-+.+.
T Consensus 101 ~DrIsalTLLVq~sP~h~~k~letLls~C~kksrn~a~q~l~~lKDLfi~gllp~rklry~k~q~~lsk~v~~k~l~~~~ 180 (821)
T COG5593 101 KDRISALTLLVQRSPSHNAKNLETLLSFCEKKSRNVAYQVLKNLKDLFISGLLPNRKLRYFKNQPGLSKEVQNKYLKQRI 180 (821)
T ss_pred hhhhhhhHhhhccCcchHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhcccCcchhhHhhhcCcchhhhhcchHHHHHH
Confidence 4456777777888999 99999999999987666 445588888888988 888888874 111100 1134467789
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCCc---------
Q psy14430 77 YKVWLRDCYKSLFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFY--------- 147 (497)
Q Consensus 77 ~~~wL~~~Y~~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~~--------- 147 (497)
|+.+|+..|..|++.|+.+..|+...++.+.++.+++||++.++++ .+|++..|++|++.+..
T Consensus 181 fesflk~l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe--------~nLl~L~INKlGDk~~kvsskasY~i 252 (821)
T COG5593 181 FESFLKNLRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQE--------VNLLHLFINKLGDKRDKVSSKASYVI 252 (821)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHH--------HHHHHHHHHhhccchhhhhhhhhHHH
Confidence 9999999999999999999999988899999999999999998885 79999999999987642
Q ss_pred -----------hhHHHHHHH-hhh---cCChHHHHHHHHHHHhhhcc--cchHHHHHHHHHHhcccC--CCCCccccccc
Q psy14430 148 -----------PVFVERFKE-YLS---FKDVIFYSFKSMSTLLSENF--VENEEILMNVLNFIKEIP--IPNNKEKLFPA 208 (497)
Q Consensus 148 -----------~~~i~~~~e-~~~---~~dv~~~~~~~l~~~l~~~~--~~~~~~~~n~l~lL~~l~--~~~~~~~l~~~ 208 (497)
..+++.+++ +++ .-.-+||+++.+++++-.+. .+.+.++..+|+++..+. .|++.. ....
T Consensus 253 lkLe~~hP~mk~VV~d~Iedf~f~pn~~~~s~yyalitLnqt~l~~~e~~van~lv~vyf~~f~kfl~n~~ke~~-~~s~ 331 (821)
T COG5593 253 LKLELLHPGMKEVVLDGIEDFYFKPNDLFRSRYYALITLNQTELENREKAVANKLVKVYFSIFRKFLENIPKEHR-VNSN 331 (821)
T ss_pred HHHHhcCCchhHHHHhhhhHheeccccccceeeeeehhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCchhhc-ccch
Confidence 245666666 332 33478999999999885432 235566677777777664 343321 0000
Q ss_pred --hhhhhhhccc--ccchhcchHHHHhHHHHHHHHHhccCCCChhHHHHHHHHhhhhhhccCCCchhhHHHHHHHh----
Q psy14430 209 --EAKSEEFLCG--NESLALNIKDFCTFSSKIWEVLSKWKGHTSESTKLLLMVLIDKLMYYHSNPIVITDFLMNAL---- 280 (497)
Q Consensus 209 --~~~~~~~~~~--~~~~~~~~~~~~~~~~~~w~~~l~~~~l~~~l~~~vL~~l~~~~~p~~~~p~~l~Dfl~~~~---- 280 (497)
.++...-.++ ...+.-+....++... -. ..+....+||.| .||++|++.-|....+-++.++
T Consensus 332 ~leek~~~~~~Knk~s~K~~k~e~~rkev~-------~e--knS~~~savLtG-~nRa~pfa~l~~~~~~~Hm~tlfkit 401 (821)
T COG5593 332 ILEEKLVIGLGKNKGSEKICKTEIIRKEVH-------TE--KNSFYGSAVLTG-CNRAGPFALLFRNAVKSHMMTLFKIT 401 (821)
T ss_pred hHHHHHHhhhccCCCCcccccHHHHHHHHH-------Hh--hhhHHHHHHHhc-ccccCchhhhhHHHHHHHHHHHHhhh
Confidence 0111111122 1112222233444332 12 467888999999 7999999998877777776654
Q ss_pred ---cCChhHHHHHHHHHHHHHhhcCCCchhHHHHHH-hhhCCCccccchhhhHHHHHHHHHhc-CCCChHHHHHHHHHHH
Q psy14430 281 ---SFKGPIAVLALQGMVNLVRQYNLEYPNIYDKLY-ALLEPNIFYTKYKARLFYLTDLLMMS-THLPEGLVASFIKRLS 355 (497)
Q Consensus 281 ---~~~~~~sllaL~~lF~L~~~~nld~~~FY~~LY-~lL~p~~~~~~~r~~~l~L~dlflss-~~~~~~rvaAFiKRL~ 355 (497)
+++ +++|||+.++|.....-++.+|||+.|| +++||.+..++ ++ -++|+++|.|. -+.++.||-||+||.+
T Consensus 402 h~~~fn--ts~qalmli~q~~~~~~l~SdryY~~lYesl~dprls~ss-Kq-giylnllykSL~vd~nV~rv~af~kr~l 477 (821)
T COG5593 402 HEFLFN--TSEQALMLIDQEFYRFLLDSDRYYTPLYESLIDPRLSESS-KQ-GIYLNLLYKSLRVDTNVHRVDAFRKRAL 477 (821)
T ss_pred hhhhhh--HHHHHHHHHHHHHHHHhhccchhhhhHHHHHhhhhhhccc-cc-chhHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 445 9999999999999999999999999999 99999998776 44 58889999988 5668999999999999
Q ss_pred HHh-ccCChHHHHHHHHHHHHHHHhcccccccccCccc--------------CCCCCCCCCCCCCCCCCCCCCccchhhH
Q psy14430 356 RLC-LTAPPQDIAIMIYLIGNLVLRHKGLTILFQNSDA--------------TMLEDDPFDAKQEDPYHTNALKSSLWEI 420 (497)
Q Consensus 356 ~ls-L~~pp~~~~~~L~li~~Ll~~~p~l~~Ll~~~~~--------------~~~~~~~y~~~~~dP~~snA~~s~LWEL 420 (497)
|+| -+..+++..|....+.+|-..-|.++.|+.+.+- ..+....||...|||.++||..|||||+
T Consensus 478 Qv~S~w~~~p~~tg~f~~l~ql~~a~~~lk~l~tn~~vd~e~e~d~~eeq~dkd~krkeydgrkrdpk~anae~s~lwei 557 (821)
T COG5593 478 QVISGWMVLPFDTGDFMSLLQLEMACGDLKNLLTNTPVDYEYESDAEEEQGDKDIKRKEYDGRKRDPKFANAEKSSLWEI 557 (821)
T ss_pred HHhhccccCCccchHHHHHHHHHHHhHHHHHHhcCCCcccccccchhhhhcccchhhhhccCcccCcccccccccchhhh
Confidence 994 5567888888888888888888999999865421 0123346999999999999999999999
Q ss_pred HHhccCCChhHHHHHHHhhCC---CCCCccCcccccCCCHHHHHHHHHhccCCCC
Q psy14430 421 KMLQNHPLYTVNVPARFINNP---LPNVEWDLGNYLEVNYDEIFNKEFKKKQKNI 472 (497)
Q Consensus 421 ~~L~~HyhP~V~~~A~~l~~~---~~~~~~~~~~~ld~~~~~~~~~e~~~~~k~~ 472 (497)
..+.+||||+|..+|+....| +.++...+ +|..+|+|++++|..|+.
T Consensus 558 ~~finhfhptv~~~a~a~v~ge~~i~kp~l~l-----~tl~hfldrf~yr~~kqt 607 (821)
T COG5593 558 NNFINHFHPTVKTYANAYVTGEEQIAKPDLGL-----FTLSHFLDRFVYRSAKQT 607 (821)
T ss_pred hhhhhhcccHHHHHHHHhhhhhhhhcCCCcch-----hhHHHHHHHHHhcCcccc
Confidence 999999999999999998765 45664444 799999999999988754
No 6
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=100.00 E-value=4.6e-38 Score=293.02 Aligned_cols=151 Identities=37% Similarity=0.573 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHhhcCCCchhHHHHHHhhh-CCCccccchhhh-HHHHHHHHHhcCCCChHHHHHHHHHHHHHhccCCh
Q psy14430 286 IAVLALQGMVNLVRQYNLEYPNIYDKLYALL-EPNIFYTKYKAR-LFYLTDLLMMSTHLPEGLVASFIKRLSRLCLTAPP 363 (497)
Q Consensus 286 ~sllaL~~lF~L~~~~nld~~~FY~~LY~lL-~p~~~~~~~r~~-~l~L~dlflss~~~~~~rvaAFiKRL~~lsL~~pp 363 (497)
++|+|+.++|++++++|+|+++||++||++| +|..++++++.. ++++++.+++++++|..|||||||||+|+|+++||
T Consensus 1 ~~i~al~~l~~l~~~~n~d~~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l~~~~~~~~rvaAFiKRLl~~sl~~~~ 80 (164)
T PF03914_consen 1 TCIQALFLLFQLLSGQNIDLDRFYRALYSLLLDPELFSSSDKSALLLNLLDKSLKSDHLPIQRVAAFIKRLLQLSLHLPP 80 (164)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchhhccccchHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4799999999999999999999999999887 999999987766 99999999988999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCcccCC-----------CCCCCCCCCCCCCCCCCCCccchhhHHHhccCCChhHH
Q psy14430 364 QDIAIMIYLIGNLVLRHKGLTILFQNSDATM-----------LEDDPFDAKQEDPYHTNALKSSLWEIKMLQNHPLYTVN 432 (497)
Q Consensus 364 ~~~~~~L~li~~Ll~~~p~l~~Ll~~~~~~~-----------~~~~~y~~~~~dP~~snA~~s~LWEL~~L~~HyhP~V~ 432 (497)
+.++++|.+|++++++||.|+.|+++++... ..+++|||+++||++|||.+|+||||.+|++||||+|+
T Consensus 81 ~~~~~~L~~i~~ll~~~p~l~~ll~~~~~~~~~~~~~~~~~~~~~~~Y~p~~~dP~~~~a~~s~lWEL~lL~~H~hP~V~ 160 (164)
T PF03914_consen 81 SFALAILALIRKLLKRHPNLKSLLDNEEKKADSGSEEEDEEDKSEDKYDPEKRDPEFSNALASSLWELNLLRNHYHPSVR 160 (164)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHhcCCccccccchhhcccccccccccCcCCCCHhHcCCchhHHHHHHHHHHCCCcHHH
Confidence 9999999999999999999999999887521 12359999999999999999999999999999999999
Q ss_pred HHHH
Q psy14430 433 VPAR 436 (497)
Q Consensus 433 ~~A~ 436 (497)
.+|+
T Consensus 161 ~~A~ 164 (164)
T PF03914_consen 161 QFAR 164 (164)
T ss_pred HHhC
Confidence 9985
No 7
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=99.66 E-value=1.2e-16 Score=135.26 Aligned_cols=87 Identities=10% Similarity=0.180 Sum_probs=78.6
Q ss_pred cchHHHHHHHHHHhhCcc-ccccHHHHHHhhccC-CCc-HHHHHHHHHHHHHHHhhcCCCCCCcchh---hhhhhHHHHH
Q psy14430 2 AGQINLKKKINEFLSNRK-YSNNLIEILACLDDV-NKV-KPNTLLGIQRLFVELLKKHAMSSQTSED---QDKKIKAAEE 75 (497)
Q Consensus 2 ~~k~~i~~l~~~ile~~~-n~n~l~~Ll~~~~~~-~~~-~~~a~~sL~~vF~~ll~~~~l~~~~~~~---~~~~~~~~~~ 75 (497)
++|++|+.+|+.|+|||+ |+.+|.+|++++++. +.+ .++|++|++.||+||+|||+||++++++ +-+|++.+.+
T Consensus 3 ~~K~~IA~l~~~ile~PE~ni~~lk~l~~~~~~~~~~~v~kLa~lSl~~VFkDIiPgYrIR~~te~e~~~kvsKev~~lr 82 (95)
T PF07540_consen 3 EAKEEIASLASSILEDPEENIGSLKRLLKLCESKVDVTVRKLAILSLLAVFKDIIPGYRIRPLTEKEKKEKVSKEVRKLR 82 (95)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcCCCcccCCCChHHhhhhHHHHHHHHH
Confidence 579999999999999999 999999999999987 444 5789999999999999999999986664 4469999999
Q ss_pred HHHHHHHHHHHHH
Q psy14430 76 KYKVWLRDCYKSL 88 (497)
Q Consensus 76 ~~~~wL~~~Y~~~ 88 (497)
.||+.|...|+.|
T Consensus 83 ~~E~~Ll~~Y~~y 95 (95)
T PF07540_consen 83 DFEQSLLKNYQKY 95 (95)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999976
No 8
>KOG2153|consensus
Probab=97.86 E-value=2.7e-05 Score=84.75 Aligned_cols=107 Identities=13% Similarity=0.037 Sum_probs=86.4
Q ss_pred CChHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcccccccccCcccCCCCCCCCCCCCCCCCCCCCCccchhhHH
Q psy14430 342 LPEGLVASFIKRLSRLCLTAPPQDIAIMIYLIGNLVLRHKGLTILFQNSDATMLEDDPFDAKQEDPYHTNALKSSLWEIK 421 (497)
Q Consensus 342 ~~~~rvaAFiKRL~~lsL~~pp~~~~~~L~li~~Ll~~~p~l~~Ll~~~~~~~~~~~~y~~~~~dP~~snA~~s~LWEL~ 421 (497)
-|..+|.+|++||+.+++|.-+.... .....+..++.|..|..++. |++|++....+||..
T Consensus 578 ~~v~~~~~~~~~Ll~~~~h~~~~s~~----~s~~~~~~fsk~~~~~~~~~---------------pe~~s~a~~al~e~~ 638 (704)
T KOG2153|consen 578 KPVVNVITKMERLLKCSLHVFFNSKL----ISKYRDIEFSKRLNLLDSET---------------PEYCSIASLALFEKL 638 (704)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccc----hHHHHHHHhhhhhhhhhccC---------------ccccccccHHHHHHH
Confidence 46778999999999999998888776 55667777888888877653 999999999999999
Q ss_pred HhccCCChhHHHHHHHhhCCCCCC--ccCcccccCCCHHHHHHHHHhccC
Q psy14430 422 MLQNHPLYTVNVPARFINNPLPNV--EWDLGNYLEVNYDEIFNKEFKKKQ 469 (497)
Q Consensus 422 ~L~~HyhP~V~~~A~~l~~~~~~~--~~~~~~~ld~~~~~~~~~e~~~~~ 469 (497)
+++ |||.|+.+|..+.-|.|.. ...-.++-..+.+++|+..+-...
T Consensus 639 l~r--y~~~~~~~a~~~~~G~~~~~~~a~~p~~s~~sa~~L~~~~~~~~~ 686 (704)
T KOG2153|consen 639 LLR--YHPISRLMASEIAIGVGATGEGALPPELSNLSAAELFEQDLLEMH 686 (704)
T ss_pred HHh--cchHHHHHHHHHhhcCCccCcCCCCccccCchHHHHhhhHHHHhc
Confidence 999 9999999999887776532 233344556788999999877654
No 9
>PTZ00429 beta-adaptin; Provisional
Probab=90.64 E-value=39 Score=39.27 Aligned_cols=415 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhCcc---ccccHHHHHHhhccCCC-cHHHHHHHHHHHHHH------HhhcCCCCCCcchhhhhhhHHH
Q psy14430 4 QINLKKKINEFLSNRK---YSNNLIEILACLDDVNK-VKPNTLLGIQRLFVE------LLKKHAMSSQTSEDQDKKIKAA 73 (497)
Q Consensus 4 k~~i~~l~~~ile~~~---n~n~l~~Ll~~~~~~~~-~~~~a~~sL~~vF~~------ll~~~~l~~~~~~~~~~~~~~~ 73 (497)
|..+-.+++-..-+|+ ..+-+..|.+++.+.++ ++..|+.+|+.|=.. +.... -.+--..
T Consensus 158 KtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~----------~~~Ll~~ 227 (746)
T PTZ00429 158 KTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEW----------VNRLVYH 227 (746)
T ss_pred HHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHH----------HHHHHHH
Q ss_pred HHHHHHH-------HHHHH--------HHHHHHHHHhhccCccchHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHH
Q psy14430 74 EEKYKVW-------LRDCY--------KSLFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLI 138 (497)
Q Consensus 74 ~~~~~~w-------L~~~Y--------~~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV 138 (497)
...+-+| +..+| ...++.+...+++....+-..|+++++.+...-. .++.+.++
T Consensus 228 L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~-----------~~~~~~~~ 296 (746)
T PTZ00429 228 LPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS-----------QELIERCT 296 (746)
T ss_pred hhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC-----------HHHHHHHH
Q ss_pred HHhhCCCCchhHHHHHHHhhhcCChHHHHHHHHHHHhhhcccchHHHHHHHHHHhcccCCCCCccccccchhhhhhhccc
Q psy14430 139 KNILSSPFYPVFVERFKEYLSFKDVIFYSFKSMSTLLSENFVENEEILMNVLNFIKEIPIPNNKEKLFPAEAKSEEFLCG 218 (497)
Q Consensus 139 ~~Ll~~~~~~~~i~~~~e~~~~~dv~~~~~~~l~~~l~~~~~~~~~~~~n~l~lL~~l~~~~~~~~l~~~~~~~~~~~~~ 218 (497)
.++..+ +-.+ ......++|.+++.|..++..........+..+|+..+.-.- -...++ +-=..+..
T Consensus 297 ~rl~~p------Lv~L--~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~y-IK~~KL-----eIL~~Lan 362 (746)
T PTZ00429 297 VRVNTA------LLTL--SRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPF-VKLEKL-----RLLLKLVT 362 (746)
T ss_pred HHHHHH------HHHh--hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHH-HHHHHH-----HHHHHHcC
Q ss_pred ccchhcchHHHHhHHHHHHHHHhccCCCChhHHHHHHHHhhhhhhccCCCchhhHHHHHHHhcCChhHHHHHHHHHHHHH
Q psy14430 219 NESLALNIKDFCTFSSKIWEVLSKWKGHTSESTKLLLMVLIDKLMYYHSNPIVITDFLMNALSFKGPIAVLALQGMVNLV 298 (497)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~w~~~l~~~~l~~~l~~~vL~~l~~~~~p~~~~p~~l~Dfl~~~~~~~~~~sllaL~~lF~L~ 298 (497)
+..-..--.++++... +.+.+..+++...+.+-+.-+=..-....|+|.+.++.++....+++..+..++
T Consensus 363 e~Nv~~IL~EL~eYa~----------d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~Il 432 (746)
T PTZ00429 363 PSVAPEILKELAEYAS----------GVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIV 432 (746)
T ss_pred cccHHHHHHHHHHHhh----------cCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q ss_pred hhcCCCchhHHHHHHhhhC----CCccccchhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy14430 299 RQYNLEYPNIYDKLYALLE----PNIFYTKYKARLFYLTDLLMMSTHLPEGLVASFIKRLSRLCLTAPPQDIAIMIYLIG 374 (497)
Q Consensus 299 ~~~nld~~~FY~~LY~lL~----p~~~~~~~r~~~l~L~dlflss~~~~~~rvaAFiKRL~~lsL~~pp~~~~~~L~li~ 374 (497)
.+ ||.-| .+-.++. +.+-...-|+-.+-++--|=..-.-....+..|+++... -++..-+.+|...-
T Consensus 433 rk----yP~~~-il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~----E~~~VqlqlLta~v 503 (746)
T PTZ00429 433 RK----YPELL-MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIME----HEQRVQLAILSAAV 503 (746)
T ss_pred HH----CccHH-HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhcc----CCHHHHHHHHHHHH
Q ss_pred HHHHhccc-----ccccccCcccCCCCCCCCCCCCCCCCCCCCCccchhhHHHhccCCChhHHHHHHHhhCCCCCCccCc
Q psy14430 375 NLVLRHKG-----LTILFQNSDATMLEDDPFDAKQEDPYHTNALKSSLWEIKMLQNHPLYTVNVPARFINNPLPNVEWDL 449 (497)
Q Consensus 375 ~Ll~~~p~-----l~~Ll~~~~~~~~~~~~y~~~~~dP~~snA~~s~LWEL~~L~~HyhP~V~~~A~~l~~~~~~~~~~~ 449 (497)
+++-++|. +..++..-. ..++.||-..| +--.|-|... +|..+.+.+.+....|.+..+-
T Consensus 504 Klfl~~p~~~~~~l~~vL~~~t---~~~~d~DVRDR--------A~~Y~rLLs~----~~~~~~a~~iv~~~~~~i~~~~ 568 (746)
T PTZ00429 504 KMFLRDPQGMEPQLNRVLETVT---THSDDPDVRDR--------AFAYWRLLSK----GITVAQMKKVVHGQMVPVNVDS 568 (746)
T ss_pred HHHhcCcHHHHHHHHHHHHHHH---hcCCChhHHHH--------HHHHHHHHcC----CCcHHHHHHHHcCCCCCCCccc
Q ss_pred ccccCCCHHHHHHHHHhcc---CCCCcccccCCCCCCCCCcc
Q psy14430 450 GNYLEVNYDEIFNKEFKKK---QKNISTNFEKPSDMFQPTVT 488 (497)
Q Consensus 450 ~~~ld~~~~~~~~~e~~~~---~k~~~l~~~~~~~~~~~~~~ 488 (497)
+ +.|...-+=+..+++.- +-++|=.|..+...|+..++
T Consensus 569 ~-~~d~~~l~~L~~~~~tlssvY~kp~~~f~~~~~~~~~~~~ 609 (746)
T PTZ00429 569 T-FSDAMTMADLKKSLNTAAIVFARPYQSFLPPYGLADVELD 609 (746)
T ss_pred c-cCCHHHHHHHHHhcCceeeeecCCHHHhcCchhccccccc
No 10
>KOG1059|consensus
Probab=71.88 E-value=2e+02 Score=33.35 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHhhcCC
Q psy14430 81 LRDCYKSLFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKY 121 (497)
Q Consensus 81 L~~~Y~~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~ 121 (497)
|+.++..+++.| .|++.++++.|++.+|+|.+-.++.
T Consensus 179 lr~~FprL~EkL----eDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 179 LRPCFPRLVEKL----EDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred HhhhHHHHHHhc----cCCCchHHHHHHHHHHHHHhhCCcc
Confidence 566665555554 4688899999999999999866643
No 11
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=70.87 E-value=1.9e+02 Score=32.60 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=31.5
Q ss_pred HHHHHHHhhccCccchHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCCc---hhHHHHHHH
Q psy14430 88 LFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFY---PVFVERFKE 156 (497)
Q Consensus 88 ~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~~---~~~i~~~~e 156 (497)
-++.+.+++.|.+..+|..|+..+-.+.+..+++ ...+.-++-.|++++.. ..+-+.+.+
T Consensus 60 Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~---------v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ 122 (556)
T PF05918_consen 60 AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH---------VSKVADVLVQLLQTDDPVELDAVKNSLMS 122 (556)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T----------HHHHHHHHHHHTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH---------HhHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3566777787888788888888888887765544 22233333347776554 344445544
No 12
>KOG1058|consensus
Probab=61.07 E-value=3e+02 Score=32.11 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhhcCCC-chhHHHHHH-hhhCC-CccccchhhhHHHHHHHHHhc-CCCChHHHHHHHHHHHHHhccC
Q psy14430 286 IAVLALQGMVNLVRQYNLE-YPNIYDKLY-ALLEP-NIFYTKYKARLFYLTDLLMMS-THLPEGLVASFIKRLSRLCLTA 361 (497)
Q Consensus 286 ~sllaL~~lF~L~~~~nld-~~~FY~~LY-~lL~p-~~~~~~~r~~~l~L~dlflss-~~~~~~rvaAFiKRL~~lsL~~ 361 (497)
+.--||..++.|++.||++ --.|..+=. +.-+. .--.-+||+...+-+..|-.. .+..+ .-|-=|+-.--..
T Consensus 333 vr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aa----tvV~~ll~fisD~ 408 (948)
T KOG1058|consen 333 VRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAA----TVVSLLLDFISDS 408 (948)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHH----HHHHHHHHHhccC
Confidence 4556777778888877763 444544433 22222 112334565444433322221 22222 2222222323346
Q ss_pred ChHHHHHHHHHHHHHHHhcccccccc
Q psy14430 362 PPQDIAIMIYLIGNLVLRHKGLTILF 387 (497)
Q Consensus 362 pp~~~~~~L~li~~Ll~~~p~l~~Ll 387 (497)
.+.++.++|.||++.+.++|+++..+
T Consensus 409 N~~aas~vl~FvrE~iek~p~Lr~~i 434 (948)
T KOG1058|consen 409 NEAAASDVLMFVREAIEKFPNLRASI 434 (948)
T ss_pred CHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 78899999999999999999877554
No 13
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=42.05 E-value=2.9e+02 Score=25.68 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=38.2
Q ss_pred HHHHHHHhhccCccchHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCCc
Q psy14430 88 LFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFY 147 (497)
Q Consensus 88 ~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~~ 147 (497)
|...+..+++|++..+|..|+.++.+|+.... --+...++..++..+.+++..
T Consensus 26 ~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-------ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 26 YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-------IKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-------eeehhhhhHHHHHHHcCCCHH
Confidence 35577788889988899999999999987332 135567767777766554433
No 14
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=40.23 E-value=2.7e+02 Score=27.99 Aligned_cols=110 Identities=18% Similarity=0.302 Sum_probs=75.6
Q ss_pred hhhHHHHHHHhcCChhHHHHHHHHHHHHHhhcCCC---chhHHHHHHhhhCCCccccchhhhHHHHHHHHHhcCCCC--h
Q psy14430 270 IVITDFLMNALSFKGPIAVLALQGMVNLVRQYNLE---YPNIYDKLYALLEPNIFYTKYKARLFYLTDLLMMSTHLP--E 344 (497)
Q Consensus 270 ~~l~Dfl~~~~~~~~~~sllaL~~lF~L~~~~nld---~~~FY~~LY~lL~p~~~~~~~r~~~l~L~dlflss~~~~--~ 344 (497)
..+.+|+.+.++ ......-||.|+..|++..+.. ....-+.+++-.++.....+.|...+.+++.++.. +.+ .
T Consensus 41 ~~L~~F~~~rl~-D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~-~~~~l~ 118 (262)
T PF14500_consen 41 QVLLDFFCSRLD-DHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN-HREALQ 118 (262)
T ss_pred HHHHHHHHHHhc-cHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH-hHHHHH
Confidence 456788888774 2234455688888888666664 44566677766676666666677778887776654 111 2
Q ss_pred HHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHhcc
Q psy14430 345 GLVASFIKRLSRLCLT-APPQDIAIMIYLIGNLVLRHK 381 (497)
Q Consensus 345 ~rvaAFiKRL~~lsL~-~pp~~~~~~L~li~~Ll~~~p 381 (497)
..-..|++.+++++-. -.|-..+.+..+++.+++.++
T Consensus 119 ~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 119 SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 2235799988887765 358888888888898888888
No 15
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=39.38 E-value=3.6e+02 Score=28.29 Aligned_cols=86 Identities=17% Similarity=0.187 Sum_probs=55.5
Q ss_pred HHHHHHhhCccccccHHHHHHhhccCCCc-HHHHHHHHHHHHHHHhhcCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q psy14430 9 KKINEFLSNRKYSNNLIEILACLDDVNKV-KPNTLLGIQRLFVELLKKHAMSSQTSEDQDKKIKAAEEKYKVWLRDCYKS 87 (497)
Q Consensus 9 ~l~~~ile~~~n~n~l~~Ll~~~~~~~~~-~~~a~~sL~~vF~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~wL~~~Y~~ 87 (497)
.++..|++|+. +.. +.+..+..+-+ +..|.. .|++++-+.+ ....++|..+|..
T Consensus 155 ~l~~~iL~~~~-f~~---ff~~~~~~~Fdiasdaf~----t~~~llt~hk-----------------~~~a~fl~~n~d~ 209 (335)
T PF08569_consen 155 SLAKIILYSEC-FWK---FFKYVQLPNFDIASDAFS----TFKELLTRHK-----------------KLVAEFLSNNYDR 209 (335)
T ss_dssp HHHHHHHTSGG-GGG---HHHHTTSSSHHHHHHHHH----HHHHHHHSSH-----------------HHHHHHHHHTHHH
T ss_pred HHHHHHhCcHH-HHH---HHHHhcCCccHhHHHHHH----HHHHHHhccH-----------------HHHHHHHHHHHHH
Confidence 35666777553 222 44444433323 334554 4555555531 2445689999999
Q ss_pred HHHHHHHhhccCccchHHHHHHHHHHHHHhhc
Q psy14430 88 LFPKLFDILFNGESEVQIQTFSTLMHLVQGEA 119 (497)
Q Consensus 88 ~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~ 119 (497)
|.+....++.++.--.+..+|..+-+++...+
T Consensus 210 ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~ 241 (335)
T PF08569_consen 210 FFQKYNKLLESSNYVTKRQSLKLLGELLLDRS 241 (335)
T ss_dssp HHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHccCCCeEeehhhHHHHHHHHHchh
Confidence 99999999988776678899999999987443
No 16
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=36.83 E-value=6.4e+02 Score=30.99 Aligned_cols=243 Identities=15% Similarity=0.145 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCCc--hhHHHHHHH-hhhcCChHHHHHHHHHHHhhhcccc
Q psy14430 105 IQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFY--PVFVERFKE-YLSFKDVIFYSFKSMSTLLSENFVE 181 (497)
Q Consensus 105 ~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~~--~~~i~~~~e-~~~~~dv~~~~~~~l~~~l~~~~~~ 181 (497)
..+-.++..|+... .+++...|+++-.++.. +.+-..+.+ |.++++......+.++=.+.+-...
T Consensus 488 ~lgr~AL~nLL~~N------------~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~ 555 (1120)
T PF14228_consen 488 SLGRRALKNLLEHN------------PDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDE 555 (1120)
T ss_pred HHHHHHHHHHHHhh------------HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCC
Confidence 34556666666522 36888888888766543 445566655 5566554444445554344332222
Q ss_pred hHHHHHHHHHHhcccC---CCCCc-cccccchhhhhhhcccccchhcchH-------------H-HHhHHHHHHHHHhcc
Q psy14430 182 NEEILMNVLNFIKEIP---IPNNK-EKLFPAEAKSEEFLCGNESLALNIK-------------D-FCTFSSKIWEVLSKW 243 (497)
Q Consensus 182 ~~~~~~n~l~lL~~l~---~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~w~~~l~~ 243 (497)
..+.=...+.||..+. ...+. +.. .+-+.-++.+....++.. + .-..|.+++.+++..
T Consensus 556 ~~eIR~~A~qLL~~Le~R~~~~s~~~~~----~~f~~si~s~l~~vYk~aQ~eLS~~LA~~hPELs~~ifSEi~~R~~~~ 631 (1120)
T PF14228_consen 556 SSEIRSKAMQLLRALEERFFSSSGSEKS----GDFRESISSKLPAVYKKAQFELSKRLAKQHPELSFPIFSEISQRFFNA 631 (1120)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccccccc----cceehhccCCcHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhc
Confidence 2233334455555543 11110 000 000111111111122111 1 122455555555543
Q ss_pred CCCChhHHHHHHHHhhhhhhccCCCchhhHHHHHHHhcCChhHHHHHHHHHHHHHhhcCCCchhHHHHHHhhhCCCcccc
Q psy14430 244 KGHTSESTKLLLMVLIDKLMYYHSNPIVITDFLMNALSFKGPIAVLALQGMVNLVRQYNLEYPNIYDKLYALLEPNIFYT 323 (497)
Q Consensus 244 ~~l~~~l~~~vL~~l~~~~~p~~~~p~~l~Dfl~~~~~~~~~~sllaL~~lF~L~~~~nld~~~FY~~LY~lL~p~~~~~ 323 (497)
- +....+.+|..| .||+.|-.+.. .-+.| .+-.-|+.+|.+..+++-++|+=..+|..-|-..- .
T Consensus 632 ~--~~~~rr~mL~~L----lPWvqnleL~~-----~~~~g--~s~~vL~nL~~iT~k~~d~~~~Eve~lW~~L~~~~-~- 696 (1120)
T PF14228_consen 632 V--PPDARRDMLAYL----LPWVQNLELVS-----LPESG--WSEMVLNNLFYITIKFGDDHPNEVEALWIALASNP-Q- 696 (1120)
T ss_pred C--ChhHHHHHHHHH----HHHHhhceecc-----cCCCC--cHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCc-c-
Confidence 2 344445666665 89998754321 12223 45678999999999999999999999996553210 0
Q ss_pred chhhhHHHHHHHHHhcCCCC--hH------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy14430 324 KYKARLFYLTDLLMMSTHLP--EG------LVASFIKRLSRLCLTAPPQDIAIMIYLIGNLVLRH 380 (497)
Q Consensus 324 ~~r~~~l~L~dlflss~~~~--~~------rvaAFiKRL~~lsL~~pp~~~~~~L~li~~Ll~~~ 380 (497)
.-+...-+|+...+...+.+ .. -.-+++||+.-......|.-.+. -++++|-.+.
T Consensus 697 N~~~il~FLi~~~le~~~~~~~~~~~~~~~~~~~~~K~v~~yL~r~~p~~~id--~Lv~el~~~~ 759 (1120)
T PF14228_consen 697 NIRVILDFLIELGLERCDQNASKEISVAFATLLPYAKRVVLYLARVSPQQMID--ELVYELQQRD 759 (1120)
T ss_pred cHHHHHHHHHHHhhhhccccchhhhhhhhhhhccccceeeEeeecCCHHHHHH--HHHHHHHHhh
Confidence 11111112222222222221 11 12345788766666666655544 4455665553
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=36.61 E-value=5.7e+02 Score=27.50 Aligned_cols=132 Identities=15% Similarity=0.152 Sum_probs=83.2
Q ss_pred ChhHHHHHHHHhhhhhhccCCCchhhHHHHHHHhcCCh-hHHHHHHHHHHHHHhhcCCCchhHHHHHHhhhCCCccccch
Q psy14430 247 TSESTKLLLMVLIDKLMYYHSNPIVITDFLMNALSFKG-PIAVLALQGMVNLVRQYNLEYPNIYDKLYALLEPNIFYTKY 325 (497)
Q Consensus 247 ~~~l~~~vL~~l~~~~~p~~~~p~~l~Dfl~~~~~~~~-~~sllaL~~lF~L~~~~nld~~~FY~~LY~lL~p~~~~~~~ 325 (497)
+.+....+...+..-+--|..++....|.+.+.+..+| .+.-.++..+..++.+..--...--..|+..++. +.+...
T Consensus 353 d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~-~~~~~~ 431 (526)
T PF01602_consen 353 DPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLED-ISSPEA 431 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTS-SSSHHH
T ss_pred chhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHH-hhHHHH
Confidence 45566666666665555566677778888998887654 5566777788888877554456667788877754 222222
Q ss_pred hhhHHHHHHHHHhc-CCCChHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc
Q psy14430 326 KARLFYLTDLLMMS-THLPEGLVASFIKRLSRLCLTAPPQDIAIMIYLIGNLVLRHK 381 (497)
Q Consensus 326 r~~~l~L~dlflss-~~~~~~rvaAFiKRL~~lsL~~pp~~~~~~L~li~~Ll~~~p 381 (497)
+.....++.-|-.. .+ .. .+.-++..+.......++..-+.++...-++..++|
T Consensus 432 ~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 432 LAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp HHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC
Confidence 23233333333222 22 12 555566666666666777788889999999998888
No 18
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=35.71 E-value=1e+02 Score=28.56 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=44.1
Q ss_pred CchhHHHHHHhhhCCCccccchhhhHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHH
Q psy14430 304 EYPNIYDKLYALLEPNIFYTKYKARLFYLTDLLMMSTHLPE---GLVASFIKRLSRLCLTAP--PQDIAIMIYLIGNLVL 378 (497)
Q Consensus 304 d~~~FY~~LY~lL~p~~~~~~~r~~~l~L~dlflss~~~~~---~rvaAFiKRL~~lsL~~p--p~~~~~~L~li~~Ll~ 378 (497)
.+..+.+.|++.|...--....+.-..-|.++|-...+.|. .-+...+.++.+.++... +.....++..+..+++
T Consensus 64 ~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 64 HGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 35678888888886421111112212234455544433322 223334444444444433 4777788999999999
Q ss_pred hcccc
Q psy14430 379 RHKGL 383 (497)
Q Consensus 379 ~~p~l 383 (497)
+||..
T Consensus 144 ~~ptt 148 (165)
T PF08167_consen 144 HHPTT 148 (165)
T ss_pred HCCcc
Confidence 99963
No 19
>KOG1059|consensus
Probab=31.41 E-value=1e+02 Score=35.48 Aligned_cols=61 Identities=10% Similarity=0.130 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhccCccchHHHHHHHHHHHHHhhcCCC---------CC-CCCCCchHHHHHHHHHhhCCC
Q psy14430 85 YKSLFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYP---------IT-LSKPFPEDKLQMLIKNILSSP 145 (497)
Q Consensus 85 Y~~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~---------~~-~~~~F~~~ll~~lV~~Ll~~~ 145 (497)
-....+.+..++.|.+.++|..||+.+++.+....--+ .. +..+|+.+++..|+.-+..+.
T Consensus 334 Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 334 VQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSN 404 (877)
T ss_pred HHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence 34567888899999999999999999998876443211 01 223677788777777544443
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=30.71 E-value=7.6e+02 Score=27.17 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhccCccchHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCC
Q psy14430 85 YKSLFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPF 146 (497)
Q Consensus 85 Y~~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~ 146 (497)
...|...|...+.++...++..|+..+.+++...... .. --=.++++..++..|.+.+.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~-~~--~~~~~~l~~~i~~~L~~~d~ 133 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGA-AQ--LLVDNELLPLIIQCLRDPDL 133 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHH-HH--HhcCccHHHHHHHHHcCCcH
Confidence 5666777888888888889999999888877533221 00 01125778788886665543
No 21
>KOG1077|consensus
Probab=27.33 E-value=2.2e+02 Score=32.93 Aligned_cols=184 Identities=18% Similarity=0.126 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhccCCCChhHHHHHHHHhhhhhhccCCCchhhHHHHHHHhcCChhHHHHHHHHHHHHHhhcCCCchhHHH
Q psy14430 231 TFSSKIWEVLSKWKGHTSESTKLLLMVLIDKLMYYHSNPIVITDFLMNALSFKGPIAVLALQGMVNLVRQYNLEYPNIYD 310 (497)
Q Consensus 231 ~~~~~~w~~~l~~~~l~~~l~~~vL~~l~~~~~p~~~~p~~l~Dfl~~~~~~~~~~sllaL~~lF~L~~~~nld~~~FY~ 310 (497)
|...-++.++|=+. +.++++-|...+-|.+..+=.+ ...+||+++=.+ +------.|+.
T Consensus 91 KqIGYl~is~L~n~--n~dl~klvin~iknDL~srn~~-----------------fv~LAL~~I~ni--G~re~~ea~~~ 149 (938)
T KOG1077|consen 91 KQIGYLFISLLLNE--NSDLMKLVINSIKNDLSSRNPT-----------------FVCLALHCIANI--GSREMAEAFAD 149 (938)
T ss_pred HHHhHHHHHHHHhc--chHHHHHHHHHHHhhhhcCCcH-----------------HHHHHHHHHHhh--ccHhHHHHhhh
Q ss_pred HHHhhh-CCCccccchhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccc--ccccc
Q psy14430 311 KLYALL-EPNIFYTKYKARLFYLTDLLMMSTHLPEGLVASFIKRLSRLCLTAPPQDIAIMIYLIGNLVLRHKG--LTILF 387 (497)
Q Consensus 311 ~LY~lL-~p~~~~~~~r~~~l~L~dlflss~~~~~~rvaAFiKRL~~lsL~~pp~~~~~~L~li~~Ll~~~p~--l~~Ll 387 (497)
-+|++| .++....--+...+.|+.+|.++ ....+.--.+-|++.+---..-+...+...+|--|.++.|. +.++.
T Consensus 150 DI~KlLvS~~~~~~vkqkaALclL~L~r~s--pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~ 227 (938)
T KOG1077|consen 150 DIPKLLVSGSSMDYVKQKAALCLLRLFRKS--PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP 227 (938)
T ss_pred hhHHHHhCCcchHHHHHHHHHHHHHHHhcC--ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH
Q ss_pred cCccc--------------------------------------------------------CCCCCCCCCCCCCCCCCCC
Q psy14430 388 QNSDA--------------------------------------------------------TMLEDDPFDAKQEDPYHTN 411 (497)
Q Consensus 388 ~~~~~--------------------------------------------------------~~~~~~~y~~~~~dP~~sn 411 (497)
-.-.+ ......| ...+|.++|
T Consensus 228 ~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~---~~k~vq~~n 304 (938)
T KOG1077|consen 228 LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPP---KSKKVQHSN 304 (938)
T ss_pred HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCc---cccchHhhh
Q ss_pred CCccchhhHHHhccCCChhHHHHHHHhhC
Q psy14430 412 ALKSSLWEIKMLQNHPLYTVNVPARFINN 440 (497)
Q Consensus 412 A~~s~LWEL~~L~~HyhP~V~~~A~~l~~ 440 (497)
|-.+.|+|...|..|+.|+=..+.+...+
T Consensus 305 a~naVLFeaI~l~~h~D~e~~ll~~~~~~ 333 (938)
T KOG1077|consen 305 AKNAVLFEAISLAIHLDSEPELLSRAVNQ 333 (938)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHH
No 22
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=26.09 E-value=1.4e+02 Score=21.67 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHhcc
Q psy14430 347 VASFIKRLSRLCLT--APPQDIAIMIYLIGNLVLRHK 381 (497)
Q Consensus 347 vaAFiKRL~~lsL~--~pp~~~~~~L~li~~Ll~~~p 381 (497)
+..=|++|+.++-. .+|+-+-..+.-...|+.+|.
T Consensus 3 il~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 3 ILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44457899999987 788899999999999999986
No 23
>KOG1062|consensus
Probab=24.84 E-value=3.7e+02 Score=31.49 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=53.4
Q ss_pred HHHHHhhccCccchHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCCc--hhHHHHHHHh-hhc-CChHH
Q psy14430 90 PKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFY--PVFVERFKEY-LSF-KDVIF 165 (497)
Q Consensus 90 ~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~~--~~~i~~~~e~-~~~-~dv~~ 165 (497)
..+.++++|++.+++..|+...+.|+.+..- ..+.+.++.-|-+.+.+ ..|...+-+. .+| +|=++
T Consensus 353 ~tIleCL~DpD~SIkrralELs~~lvn~~Nv----------~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W 422 (866)
T KOG1062|consen 353 STILECLKDPDVSIKRRALELSYALVNESNV----------RVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRW 422 (866)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhccccH----------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh
Confidence 3456677777777777777777777753220 23333444434444333 3344444331 233 34444
Q ss_pred HHHHHHHHHhhh-cccchHHHHHHHHHHhcccC
Q psy14430 166 YSFKSMSTLLSE-NFVENEEILMNVLNFIKEIP 197 (497)
Q Consensus 166 ~~~~~l~~~l~~-~~~~~~~~~~n~l~lL~~l~ 197 (497)
| +..+.+.++. ...+.+..+.|++.++..-.
T Consensus 423 ~-idtml~Vl~~aG~~V~~dv~~nll~LIa~~~ 454 (866)
T KOG1062|consen 423 H-IDTMLKVLKTAGDFVNDDVVNNLLRLIANAF 454 (866)
T ss_pred H-HHHHHHHHHhcccccchhhHHHHHHHHhcCC
Confidence 4 3455555543 33567788888888877653
No 24
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=22.49 E-value=91 Score=24.81 Aligned_cols=45 Identities=7% Similarity=0.094 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhhhccCCCchhhHHHHHHHhcCChhHHHHHHHHHHHHHhh
Q psy14430 250 STKLLLMVLIDKLMYYHSNPIVITDFLMNALSFKGPIAVLALQGMVNLVRQ 300 (497)
Q Consensus 250 l~~~vL~~l~~~~~p~~~~p~~l~Dfl~~~~~~~~~~sllaL~~lF~L~~~ 300 (497)
+..+|+..+++ ++++.+-|++.|..+.|--..+-.|-.+|..+=+
T Consensus 2 lR~Ai~~nv~~------~s~~elk~~I~daI~sgEEk~LPGLGVlFE~~W~ 46 (65)
T TIGR03092 2 LRRAILANISN------NTKEQLEATIVDAIQSGEEKMLPGLGVLFEAIWK 46 (65)
T ss_pred HHHHHHHHhcC------CCHHHHHHHHHHHHhccchhcCCccHHHHHHHHH
Confidence 56778888777 7889999999999998877778888889987643
No 25
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=21.64 E-value=99 Score=24.66 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhhhccCCCchhhHHHHHHHhcCChhHHHHHHHHHHHHHhh
Q psy14430 250 STKLLLMVLIDKLMYYHSNPIVITDFLMNALSFKGPIAVLALQGMVNLVRQ 300 (497)
Q Consensus 250 l~~~vL~~l~~~~~p~~~~p~~l~Dfl~~~~~~~~~~sllaL~~lF~L~~~ 300 (497)
+..+|+..+++ ++++.+-|++.|+.+.|--..+-.|-.+|.++=+
T Consensus 3 lR~AI~~nv~g------~s~~el~~~I~daI~sgEE~~LPGLGVlFE~~W~ 47 (65)
T PF14098_consen 3 LRQAIIHNVKG------SSKEELKDTIEDAIQSGEEKALPGLGVLFEVIWK 47 (65)
T ss_pred HHHHHHHHccC------CCHHHHHHHHHHHHhccchhcCCchHHHHHHHHH
Confidence 56677777766 6788999999999998877888889999988743
No 26
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=21.52 E-value=5.1e+02 Score=28.50 Aligned_cols=117 Identities=16% Similarity=0.299 Sum_probs=0.0
Q ss_pred HhhhhhhccCCCchhhHHHHHHHhcCChhHHHHHHHHHHHHHhhcCCCchhHHHHHHhhhCCCccccchhhhHHHHHHHH
Q psy14430 257 VLIDKLMYYHSNPIVITDFLMNALSFKGPIAVLALQGMVNLVRQYNLEYPNIYDKLYALLEPNIFYTKYKARLFYLTDLL 336 (497)
Q Consensus 257 ~l~~~~~p~~~~p~~l~Dfl~~~~~~~~~~sllaL~~lF~L~~~~nld~~~FY~~LY~lL~p~~~~~~~r~~~l~L~dlf 336 (497)
+++.+++-|+..| .+||+|........ ...=.++.+.+.. .++..+|..+|+|+.-...+....-.|-++.
T Consensus 21 ~~v~~llkHI~~~-~ImDlLLklIs~d~---~~~~~~ilewL~~-----q~LI~~Li~~L~p~~~~~~q~naa~~L~aII 91 (475)
T PF04499_consen 21 NFVDNLLKHIDTP-AIMDLLLKLISTDK---PESPTGILEWLAE-----QNLIPRLIDLLSPSYSSDVQSNAADFLKAII 91 (475)
T ss_pred cHHHHHHHhcCCc-HHHHHHHHHHccCc---ccchHHHHHHHHH-----hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q ss_pred HhcCCCChH--------------HHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHhccc
Q psy14430 337 MMSTHLPEG--------------LVASFIKRLSRLCLT-APPQDIAIMIYLIGNLVLRHKG 382 (497)
Q Consensus 337 lss~~~~~~--------------rvaAFiKRL~~lsL~-~pp~~~~~~L~li~~Ll~~~p~ 382 (497)
..+..-+.. .-..+|.+|+..++. ...+..+..+..+-.|+++...
T Consensus 92 ~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknns 152 (475)
T PF04499_consen 92 RISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNNS 152 (475)
T ss_pred HHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhccc
No 27
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.81 E-value=7.7e+02 Score=28.39 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhccCccchHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhC
Q psy14430 86 KSLFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILS 143 (497)
Q Consensus 86 ~~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~ 143 (497)
+.|.+.|.+++.... .|..||..++.++...+.+. +---...+|..|+..|..
T Consensus 69 K~~~~~l~~~~~~~~--~Rl~~L~Ll~~~v~~qp~~l---~~i~~t~Lf~~LLk~L~~ 121 (668)
T PF04388_consen 69 KHLFDKLNDYFVKPS--YRLQALTLLGHFVRSQPPWL---YKILQTPLFKSLLKCLQF 121 (668)
T ss_pred HHHHHHHHHHHcCch--hHHHHHHHHHHHHhcCCchH---HHHhcChhHHHHHHHHhh
Confidence 556677777776543 57889999999998666442 111124555555554443
Done!