Query psy14430
Match_columns 497
No_of_seqs 235 out of 582
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:39:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2of3_A ZYG-9; multifunctional 65.9 99 0.0034 29.9 14.2 141 7-179 67-220 (266)
2 3b2a_A TON_1937, putative unch 63.2 18 0.00061 35.0 7.4 153 7-198 21-179 (265)
3 1w63_A Adapter-related protein 48.5 2.7E+02 0.0093 29.5 20.7 237 88-357 314-577 (618)
4 3gs3_A Symplekin, LD45768P; he 40.2 1.3E+02 0.0045 28.8 9.6 92 16-119 83-176 (257)
5 3grl_A General vesicular trans 39.6 1.7E+02 0.006 31.9 11.4 136 235-381 63-244 (651)
6 3b2a_A TON_1937, putative unch 30.4 1.6E+02 0.0055 28.4 8.2 38 81-118 27-64 (265)
7 1upk_A MO25 protein; transfera 24.3 5.4E+02 0.019 25.7 12.4 43 77-119 199-241 (341)
8 2juc_A PRE-mRNA-splicing facto 24.1 51 0.0017 24.7 2.7 36 47-82 10-58 (59)
9 3dad_A FH1/FH2 domain-containi 23.2 5.7E+02 0.019 25.5 11.3 134 26-196 122-284 (339)
10 1w63_A Adapter-related protein 20.6 7.5E+02 0.026 26.0 24.0 136 247-383 398-545 (618)
No 1
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=65.95 E-value=99 Score=29.87 Aligned_cols=141 Identities=11% Similarity=0.028 Sum_probs=79.4
Q ss_pred HHHHHHHHhhCcc-ccccHHHHHHhhc----cCCC-cHHHHHHHHHHHHHHHhhc-CCCCCCcchhhhhhhHHHHHHHHH
Q psy14430 7 LKKKINEFLSNRK-YSNNLIEILACLD----DVNK-VKPNTLLGIQRLFVELLKK-HAMSSQTSEDQDKKIKAAEEKYKV 79 (497)
Q Consensus 7 i~~l~~~ile~~~-n~n~l~~Ll~~~~----~~~~-~~~~a~~sL~~vF~~ll~~-~~l~~~~~~~~~~~~~~~~~~~~~ 79 (497)
+..+.+.+-++++ =++++.-+++.+. +.|. +...++..|..+|..+... |++.. .+
T Consensus 67 le~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~--------~e--------- 129 (266)
T 2of3_A 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ--------EE--------- 129 (266)
T ss_dssp HHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH--------HH---------
T ss_pred HHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH--------HH---------
Confidence 3444445544665 3444433444322 3444 3456888888888887764 35541 00
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCCc--hhHHHHHHH-
Q psy14430 80 WLRDCYKSLFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFY--PVFVERFKE- 156 (497)
Q Consensus 80 wL~~~Y~~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~~--~~~i~~~~e- 156 (497)
-..++-.|.+-++|..+.+|..+-.++..+....+ |..++..+++.+-+.+.. ..|+..+..
T Consensus 130 -----a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~----------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 130 -----VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG----------PLKMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp -----HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC----------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 12366777777888887788777776655544322 256888888866544322 566666654
Q ss_pred hhhcCChHHHHH---HHHHHHhhhcc
Q psy14430 157 YLSFKDVIFYSF---KSMSTLLSENF 179 (497)
Q Consensus 157 ~~~~~dv~~~~~---~~l~~~l~~~~ 179 (497)
...||-..--.+ ..+.+++..++
T Consensus 195 i~~~G~~~~~~l~~~~~ia~ll~D~d 220 (266)
T 2of3_A 195 ITNAGISPLKSLSVEKTVAPFVGDKD 220 (266)
T ss_dssp HHHHCSGGGGGGCHHHHHGGGGGCSS
T ss_pred HHhcCCCccccccchHHHHHHHcCCC
Confidence 334443322234 55666665543
No 2
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=63.23 E-value=18 Score=35.00 Aligned_cols=153 Identities=8% Similarity=0.043 Sum_probs=91.8
Q ss_pred HHHHHHHHhhCccccccHHHHHHhhccCCCc-HHHHHHHHHHHHHHHhhcCCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q psy14430 7 LKKKINEFLSNRKYSNNLIEILACLDDVNKV-KPNTLLGIQRLFVELLKKHAMSSQTSEDQDKKIKAAEEKYKVWLRDCY 85 (497)
Q Consensus 7 i~~l~~~ile~~~n~n~l~~Ll~~~~~~~~~-~~~a~~sL~~vF~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~wL~~~Y 85 (497)
|++..+....+.+ .+..|++++.+++++ +..|+.++.++-+.. .+.++ +..+
T Consensus 21 iK~a~ela~~~e~---~l~~L~~LL~dkD~~vk~raL~~LeellK~~--~~~l~----------------------~~~~ 73 (265)
T 3b2a_A 21 ILDAVSLALEDKR---ALFLILELAGEDDETTRLRAFVALGEILKRA--DSDLR----------------------MMVL 73 (265)
T ss_dssp HHHHHHHHHHCHH---HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS--CHHHH----------------------HHHH
T ss_pred HHHHHHHHHhchh---HHHHHHHHHhccchHHHHHHHHHHHHHHHhc--ccccc----------------------HHHH
Confidence 4445555555555 566677777777774 445777777665521 02111 2567
Q ss_pred HHHHHHHHHhhccCccchHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCCc--hhHHHHHHH-hh--hc
Q psy14430 86 KSLFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFY--PVFVERFKE-YL--SF 160 (497)
Q Consensus 86 ~~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~~--~~~i~~~~e-~~--~~ 160 (497)
++.++.+..++++.++.+...|+.|+-.|+...+- +.+-|..++++|.+--.. +.+.....+ +. +=
T Consensus 74 e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL---------~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv 144 (265)
T 3b2a_A 74 ERHLDVFINALSQENEKVTIKALRALGYLVKDVPM---------GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQP 144 (265)
T ss_dssp HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB---------CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCc
Confidence 78889999999888888889999999999976653 368888888877653222 333333322 22 22
Q ss_pred CChHHHHHHHHHHHhhhcccchHHHHHHHHHHhcccCC
Q psy14430 161 KDVIFYSFKSMSTLLSENFVENEEILMNVLNFIKEIPI 198 (497)
Q Consensus 161 ~dv~~~~~~~l~~~l~~~~~~~~~~~~n~l~lL~~l~~ 198 (497)
-....-+...+..++++++ .+.-.-.+++|..+.-
T Consensus 145 ~~~~~~V~~~l~sLl~Skd---~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 145 LEDSKLVRTYINELVVSPD---LYTKVAGFCLFLNMLN 179 (265)
T ss_dssp SCCCHHHHHHHHHHHTCSS---HHHHHHHHHHHHHHGG
T ss_pred ccchHHHHHHHHHHHhCCC---hhHHHHHHHHHHHhhc
Confidence 2333445556677774443 2222335666666654
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=48.54 E-value=2.7e+02 Score=29.51 Aligned_cols=237 Identities=8% Similarity=0.039 Sum_probs=122.1
Q ss_pred HHHHHHHhhccCccchHHHHHHHHHHHHHhhcCCCC-----------CCCCCCchHHHHHHHHHhhCCCCchhHHHHHHH
Q psy14430 88 LFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPI-----------TLSKPFPEDKLQMLIKNILSSPFYPVFVERFKE 156 (497)
Q Consensus 88 ~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~~-----------~~~~~F~~~ll~~lV~~Ll~~~~~~~~i~~~~e 156 (497)
.++.|..++.+.+..++-.||.++..++...+.... +++..-+..-+. ++..+.+...-..++.++.+
T Consensus 314 a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~ale-lL~~l~~~~nv~~iv~eL~~ 392 (618)
T 1w63_A 314 AINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAME-LSFALVNGNNIRGMMKELLY 392 (618)
T ss_dssp HHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHH-HHHHHCCSSSTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHH-HHHHHcccccHHHHHHHHHH
Confidence 456666777777777888888888888765432100 000011111111 12223333222456667766
Q ss_pred hh--hcCChHHHHHHHHHHHhhhcccchHHHHHHHHHHhcccCCCCCccccccchhhhhhhcccccchhcchHHHHhHHH
Q psy14430 157 YL--SFKDVIFYSFKSMSTLLSENFVENEEILMNVLNFIKEIPIPNNKEKLFPAEAKSEEFLCGNESLALNIKDFCTFSS 234 (497)
Q Consensus 157 ~~--~~~dv~~~~~~~l~~~l~~~~~~~~~~~~n~l~lL~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (497)
|. ...+++-.+++.+..+..+-......++..++.+|+.-...-..+ .+. --...+.+ ..........
T Consensus 393 ~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~-~~~---~l~~ii~~------~p~l~~~~v~ 462 (618)
T 1w63_A 393 FLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDD-AVP---NLIQLITN------SVEMHAYTVQ 462 (618)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSS-HHH---HHHHHHHH------SCSTHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHH-HHH---HHHHHHhc------ChhHHHHHHH
Confidence 54 345577777777777765422345566666666665432100000 000 00000000 0011123444
Q ss_pred HHHHHHhccCCCChhHHHHHHHHhhhhhh-----------ccCCCchhhHHHHHHHhc---CChhHHHHHHHHHHHHHhh
Q psy14430 235 KIWEVLSKWKGHTSESTKLLLMVLIDKLM-----------YYHSNPIVITDFLMNALS---FKGPIAVLALQGMVNLVRQ 300 (497)
Q Consensus 235 ~~w~~~l~~~~l~~~l~~~vL~~l~~~~~-----------p~~~~p~~l~Dfl~~~~~---~~~~~sllaL~~lF~L~~~ 300 (497)
.+|..+-... ..+.+.+.++-.+.+..- |...+|....|++...++ .+..+-.++|.++..+...
T Consensus 463 ~L~~~l~~~~-~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~ 541 (618)
T 1w63_A 463 RLYKAILGDY-SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTR 541 (618)
T ss_dssp HHHHHHHHCC-SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 5555544333 345666667766665321 333466777888877663 3445666677777666433
Q ss_pred cCCCchhHHHHHHhhhCCCccccchhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy14430 301 YNLEYPNIYDKLYALLEPNIFYTKYKARLFYLTDLLMMSTHLPEGLVASFIKRLSRL 357 (497)
Q Consensus 301 ~nld~~~FY~~LY~lL~p~~~~~~~r~~~l~L~dlflss~~~~~~rvaAFiKRL~~l 357 (497)
. |+ .+.+...++..|..+.+...+.-|.+.-||++.
T Consensus 542 ~----------------~~-----~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 542 F----------------TC-----TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp C----------------SS-----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred C----------------cc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 2 21 134455566667666777888888888888654
No 4
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=40.18 E-value=1.3e+02 Score=28.81 Aligned_cols=92 Identities=9% Similarity=0.054 Sum_probs=59.4
Q ss_pred hCcc-ccccHHHHHHhhccCCC-cHHHHHHHHHHHHHHHhhcCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14430 16 SNRK-YSNNLIEILACLDDVNK-VKPNTLLGIQRLFVELLKKHAMSSQTSEDQDKKIKAAEEKYKVWLRDCYKSLFPKLF 93 (497)
Q Consensus 16 e~~~-n~n~l~~Ll~~~~~~~~-~~~~a~~sL~~vF~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~wL~~~Y~~~~~~L~ 93 (497)
++++ -...+..|..+++++++ +++.++.+...+|.-.+.-=--.+. ..... +-+++....+++.+.
T Consensus 83 ~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~-----~~~~~-------~~~W~~m~~lK~~Il 150 (257)
T 3gs3_A 83 VKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLME-----PGDSA-------EQAWNILSLIKAQIL 150 (257)
T ss_dssp HCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSS-----CCHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CcchH-------HHHHHHHHHHHHHHH
Confidence 3555 34455566677775555 5677888888777765543322210 00011 125677888888899
Q ss_pred HhhccCccchHHHHHHHHHHHHHhhc
Q psy14430 94 DILFNGESEVQIQTFSTLMHLVQGEA 119 (497)
Q Consensus 94 ~~~~~~~~~~~~~al~~~~~Ll~~e~ 119 (497)
.+..+....++..|++.+.+.+-..+
T Consensus 151 ~~~~s~n~gvkl~~iKF~e~vIl~qT 176 (257)
T 3gs3_A 151 DMIDNENDGIRTNAIKFLEGVVVLQS 176 (257)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHccCCcchHHHHHHHHHHHHHhhc
Confidence 88877777889999999999875444
No 5
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=39.57 E-value=1.7e+02 Score=31.91 Aligned_cols=136 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHhccCCCChhHHHHHHHHhhhhhhccCCCc---------hhhHHHHHHHhcCChhHHHHHHHHHHHHHhhcCCCc
Q psy14430 235 KIWEVLSKWKGHTSESTKLLLMVLIDKLMYYHSNP---------IVITDFLMNALSFKGPIAVLALQGMVNLVRQYNLEY 305 (497)
Q Consensus 235 ~~w~~~l~~~~l~~~l~~~vL~~l~~~~~p~~~~p---------~~l~Dfl~~~~~~~~~~sllaL~~lF~L~~~~nld~ 305 (497)
...+.+|+....+.++.+.+|+.|.+-.-|--..+ ..++.+++|.+-.. --.+..++.+ ++.
T Consensus 63 ~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~----~~~i~~Ll~l-----L~~ 133 (651)
T 3grl_A 63 EHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQ----QENVTLLLSL-----LEE 133 (651)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHS----THHHHHHHHH-----TTC
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcC----CccHHHHHHH-----hcC
Q ss_pred hhHHHHHH--hhhCC------------------------CccccchhhhHHH----HHHHHHhcCCCChHHHHHH---HH
Q psy14430 306 PNIYDKLY--ALLEP------------------------NIFYTKYKARLFY----LTDLLMMSTHLPEGLVASF---IK 352 (497)
Q Consensus 306 ~~FY~~LY--~lL~p------------------------~~~~~~~r~~~l~----L~dlflss~~~~~~rvaAF---iK 352 (497)
++||.++| ++|.- +++..+... +| ++..-++..+...+-+.|| .-
T Consensus 134 ~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~--iRneallLL~~Lt~~n~~iQklVAFEnaFe 211 (651)
T 3grl_A 134 FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREV--IRNDGVLLLQALTRSNGAIQKIVAFENAFE 211 (651)
T ss_dssp CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHH--HHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHH--HHHHHHHHHHHHhcCCHHHHHHHHHhccHH
Q ss_pred HHHHHhccCCh----HHHHHHHHHHHHHHHhcc
Q psy14430 353 RLSRLCLTAPP----QDIAIMIYLIGNLVLRHK 381 (497)
Q Consensus 353 RL~~lsL~~pp----~~~~~~L~li~~Ll~~~p 381 (497)
||..+--.-.. -.+--++.++.+|++-+|
T Consensus 212 ~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 212 RLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
No 6
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=30.44 E-value=1.6e+02 Score=28.38 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHhh
Q psy14430 81 LRDCYKSLFPKLFDILFNGESEVQIQTFSTLMHLVQGE 118 (497)
Q Consensus 81 L~~~Y~~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e 118 (497)
+.+.|+.++..|..++++.+...+..||.++=++++..
T Consensus 27 la~~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~ 64 (265)
T 3b2a_A 27 LALEDKRALFLILELAGEDDETTRLRAFVALGEILKRA 64 (265)
T ss_dssp HHHHCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHhchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 77889999999999999888888999999999999864
No 7
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=24.30 E-value=5.4e+02 Score=25.67 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHhhc
Q psy14430 77 YKVWLRDCYKSLFPKLFDILFNGESEVQIQTFSTLMHLVQGEA 119 (497)
Q Consensus 77 ~~~wL~~~Y~~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~ 119 (497)
+.++|..+|..|.+...+++.++.--.+.++|..+=+++-..+
T Consensus 199 vaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~ 241 (341)
T 1upk_A 199 SAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRH 241 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCch
Confidence 4578999999999999999988766678889999999987543
No 8
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=24.14 E-value=51 Score=24.68 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCCCCC---cc-hh---------hhhhhHHHHHHHHHHHH
Q psy14430 47 RLFVELLKKHAMSSQ---TS-ED---------QDKKIKAAEEKYKVWLR 82 (497)
Q Consensus 47 ~vF~~ll~~~~l~~~---~~-~~---------~~~~~~~~~~~~~~wL~ 82 (497)
..|++|+..+.|.|- +. .+ .-.....++..|++|++
T Consensus 10 ~~F~~LL~e~~InPys~W~~e~~ki~~DpRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 10 NIFFELFDRYKLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp HHHHHHHHHTTCCTTTCSHHHHHHHSSSTTGGGSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCchhhhcccccCCCCeeecCChHHHHHHHHHHhh
Confidence 569999999999882 11 11 11255678888999986
No 9
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=23.23 E-value=5.7e+02 Score=25.50 Aligned_cols=134 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHhhccCCC-cHHHHHHHHHHHHHHHhhcCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchH
Q psy14430 26 EILACLDDVNK-VKPNTLLGIQRLFVELLKKHAMSSQTSEDQDKKIKAAEEKYKVWLRDCYKSLFPKLFDILFNGESEVQ 104 (497)
Q Consensus 26 ~Ll~~~~~~~~-~~~~a~~sL~~vF~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~wL~~~Y~~~~~~L~~~~~~~~~~~~ 104 (497)
++++-+.+.+. +.+.++-+|.++|. .+..|..+...+=. +..|..++.+.+...+
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q----------------------~D~~Fa~EFI~~~G--L~~Li~vi~~~~gN~q 177 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQ----------------------EDKDLVPEFVHSEG--LSCLIRVGAAADHNYQ 177 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHH----------------------TCTTHHHHHHHTTH--HHHHHHHHTTSCHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhh----------------------cchHHHHHHHHhcc--HHHHHHHHHhcChHHH
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCC---------chHHHHHHHHHhhCCCCc---hhHHHHHHHhhhcCChHHHH-----
Q psy14430 105 IQTFSTLMHLVQGEAKYPITLSKPF---------PEDKLQMLIKNILSSPFY---PVFVERFKEYLSFKDVIFYS----- 167 (497)
Q Consensus 105 ~~al~~~~~Ll~~e~~~~~~~~~~F---------~~~ll~~lV~~Ll~~~~~---~~~i~~~~e~~~~~dv~~~~----- 167 (497)
.-+|+++.+|+. | ++.+++.++. ++++... ...++-+..+..|.+..+..
T Consensus 178 ~Y~L~AL~~LM~------------~v~Gm~gvvs~~~fI~~lys-lv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av 244 (339)
T 3dad_A 178 SYILRALGQLML------------FVDGMLGVVAHSDTIQWLYT-LCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAV 244 (339)
T ss_dssp HHHHHHHHHHTT------------SHHHHHHHHHCHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHh------------ccccccchhCCHHHHHHHHH-HHcCccHHHHHHHHHHHHHHHccCcccchHHHHHH
Q ss_pred -----------HHHHHHHhhhcccchHHHHHHHHHHhccc
Q psy14430 168 -----------FKSMSTLLSENFVENEEILMNVLNFIKEI 196 (497)
Q Consensus 168 -----------~~~l~~~l~~~~~~~~~~~~n~l~lL~~l 196 (497)
+..+-+++.++.....+...|.+.||+.+
T Consensus 245 ~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~l 284 (339)
T 3dad_A 245 NSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKT 284 (339)
T ss_dssp HHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHH
No 10
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=20.65 E-value=7.5e+02 Score=25.97 Aligned_cols=136 Identities=11% Similarity=-0.004 Sum_probs=70.8
Q ss_pred ChhHHHHHHHHhhhhhhccCCCchhhHHHHHHHhcCCh-hHHHHHHHHHHHHHhhcCCCchhHHHHHHhhhCCCccccch
Q psy14430 247 TSESTKLLLMVLIDKLMYYHSNPIVITDFLMNALSFKG-PIAVLALQGMVNLVRQYNLEYPNIYDKLYALLEPNIFYTKY 325 (497)
Q Consensus 247 ~~~l~~~vL~~l~~~~~p~~~~p~~l~Dfl~~~~~~~~-~~sllaL~~lF~L~~~~nld~~~FY~~LY~lL~p~~~~~~~ 325 (497)
+.+....+...+.+-+.-|-.+.....|.+.+.+..+| .+.-.++..+-+++.++.--....-.+|+..|..+..+.+-
T Consensus 398 d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~ 477 (618)
T 1w63_A 398 EPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPL 477 (618)
T ss_dssp CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHH
T ss_pred CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHH
Confidence 55666666666555444444444455666666664433 23334556666676654322334566778776533322221
Q ss_pred hhhHHHHHHHHHhc-C----------CCChHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcccc
Q psy14430 326 KARLFYLTDLLMMS-T----------HLPEGLVASFIKRLSRLCLTAPPQDIAIMIYLIGNLVLRHKGL 383 (497)
Q Consensus 326 r~~~l~L~dlflss-~----------~~~~~rvaAFiKRL~~lsL~~pp~~~~~~L~li~~Ll~~~p~l 383 (497)
......++--|=.. . .+....+..++..++.-- ..++..-..++..+-++..+.|.+
T Consensus 478 ~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~~~ 545 (618)
T 1w63_A 478 VQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFTCT 545 (618)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCcch
Confidence 11233333323211 1 123444444554443322 457777788888888888887754
Done!