Query psy14430
Match_columns 497
No_of_seqs 235 out of 582
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 19:39:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14430.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14430hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vglb_ a.118.1.10 (B:) Adapti 69.4 55 0.004 32.0 20.1 134 247-387 363-500 (579)
2 d1wiga1 g.39.1.3 (A:1-32) Acti 32.7 3.6 0.00027 25.0 -0.4 8 424-431 24-31 (32)
3 d1eg3a1 a.39.1.7 (A:85-209) Dy 22.9 1.7E+02 0.012 23.0 8.5 111 150-298 4-122 (125)
4 d1upka_ a.118.1.15 (A:) Mo25 p 20.7 3E+02 0.022 25.1 13.1 86 9-119 146-232 (330)
5 d2jaka1 a.118.1.20 (A:30-372) 15.8 3.8E+02 0.028 24.3 15.3 159 128-299 129-303 (343)
6 d1w9ca_ a.118.1.19 (A:) Export 14.2 4E+02 0.029 23.8 15.3 30 284-313 181-213 (321)
7 d1b3ua_ a.118.1.2 (A:) Constan 13.1 4.5E+02 0.033 24.0 10.7 31 87-117 441-471 (588)
8 d2vglb_ a.118.1.10 (B:) Adapti 12.4 5.3E+02 0.039 24.2 24.2 260 87-384 157-422 (579)
9 d1zoqc1 a.153.1.1 (C:2065-2111 11.0 1.1E+02 0.008 19.7 3.2 32 238-277 7-38 (47)
10 d1w53a_ a.186.1.2 (A:) Phospho 10.6 2.6E+02 0.019 20.3 5.9 66 235-303 13-82 (84)
No 1
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.36 E-value=55 Score=32.02 Aligned_cols=134 Identities=11% Similarity=0.123 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHhhhhhhccCCCchhhHHHHHHHhcCCh-hHHHHHHHHHHHHHhhcCCCchhHHHHHHhhhCCCccccch
Q psy14430 247 TSESTKLLLMVLIDKLMYYHSNPIVITDFLMNALSFKG-PIAVLALQGMVNLVRQYNLEYPNIYDKLYALLEPNIFYTKY 325 (497)
Q Consensus 247 ~~~l~~~vL~~l~~~~~p~~~~p~~l~Dfl~~~~~~~~-~~sllaL~~lF~L~~~~nld~~~FY~~LY~lL~p~~~~~~~ 325 (497)
+.+..+.+...+.+-+.-+-.......|.+.+.++.++ .+.-.|+..+-+++.++.-.+..--..|...++- +-...-
T Consensus 363 d~~~~~~ai~aI~~la~~~~~~~~~~i~~Ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~ii~~L~~~l~~-~~~~~~ 441 (579)
T d2vglb_ 363 DVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDS-LDEPDA 441 (579)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTT-CCSHHH
T ss_pred CHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-cCcHHH
Confidence 56666666666554333222223345667777775554 4555577777778877766666777788876642 222222
Q ss_pred hhhHHHHHHHHHhc--CCCChHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccc-ccccc
Q psy14430 326 KARLFYLTDLLMMS--THLPEGLVASFIKRLSRLCLTAPPQDIAIMIYLIGNLVLRHKG-LTILF 387 (497)
Q Consensus 326 r~~~l~L~dlflss--~~~~~~rvaAFiKRL~~lsL~~pp~~~~~~L~li~~Ll~~~p~-l~~Ll 387 (497)
++.... .++- .+++. +.-.++-++.--...++..-+.+|..+-+++-++|. .+.|+
T Consensus 442 ~~~~iw----ilGEy~~~i~~--~~~ll~~l~~~f~~e~~~vq~~iLta~~Kl~~~~p~~~~~~~ 500 (579)
T d2vglb_ 442 RAAMIW----IVGEYAERIDN--ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELV 500 (579)
T ss_dssp HHHHHH----HHHTTCTTCTT--HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHH
T ss_pred HHHHHH----HHhCccccccc--HHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 222221 2222 23322 112222222222345677778899999998888884 44444
No 2
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.70 E-value=3.6 Score=24.97 Aligned_cols=8 Identities=13% Similarity=0.081 Sum_probs=6.3
Q ss_pred ccCCChhH
Q psy14430 424 QNHPLYTV 431 (497)
Q Consensus 424 ~~HyhP~V 431 (497)
.+||||+.
T Consensus 24 ~khYHP~C 31 (32)
T d1wiga1 24 EKHYHPSC 31 (32)
T ss_dssp SCCBCTTT
T ss_pred ccccCCCC
Confidence 58999974
No 3
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.94 E-value=1.7e+02 Score=23.04 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=60.4
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHhh--hcccchHHHHHHHHHHhcccCCCCCccccccchhhhhhhcccccchhcchH
Q psy14430 150 FVERFKEYLSFKDVIFYSFKSMSTLLS--ENFVENEEILMNVLNFIKEIPIPNNKEKLFPAEAKSEEFLCGNESLALNIK 227 (497)
Q Consensus 150 ~i~~~~e~~~~~dv~~~~~~~l~~~l~--~~~~~~~~~~~n~l~lL~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 227 (497)
..+.++++...++|||-++|+..|+-. +.-...=.-+.|+...+.+-.....+. ..+.+
T Consensus 4 m~el~~~l~dln~IrfsaYRTA~KLR~vQK~~~l~lv~l~~~~e~f~~~~l~~~d~-------------------~l~v~ 64 (125)
T d1eg3a1 4 MTELYQSLADLNNVRFSAYRTAMKLRRLQKALCLDLLSLSAACDALDQHNLKQNDQ-------------------PMDIL 64 (125)
T ss_dssp HHHHHHHGGGGTTCSSHHHHHHHHHHHHHHHTTGGGCCHHHHHHHHHHTTCCCTTS-------------------EEEHH
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHcCCCCCcc-------------------CCCHH
Confidence 344556678999999999999877763 211111111334544444333322111 12223
Q ss_pred HHHhHHHHHHHHHhccCCCChhHHHHHHHHhhhhhhccCCC----chhhHHHHHHHhcCC--hhHHHHHHHHHHHHH
Q psy14430 228 DFCTFSSKIWEVLSKWKGHTSESTKLLLMVLIDKLMYYHSN----PIVITDFLMNALSFK--GPIAVLALQGMVNLV 298 (497)
Q Consensus 228 ~~~~~~~~~w~~~l~~~~l~~~l~~~vL~~l~~~~~p~~~~----p~~l~Dfl~~~~~~~--~~~sllaL~~lF~L~ 298 (497)
+.-....++|.++=+ -.|...| .+.+..||...||.+ |.++++++...+.++
T Consensus 65 ~l~~~L~~iy~~l~~-------------------~~~~~v~vp~~~dl~LN~LlnvYD~~rtG~i~vls~KvaL~~L 122 (125)
T d1eg3a1 65 QIINCLTTIYDRLEQ-------------------EHNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISL 122 (125)
T ss_dssp HHHHHHHHHHHHHHH-------------------HSTTTCCHHHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhh-------------------hCcccCChHHHHHHHHHHHHHHhCCCCCCeeeehHHHHHHHHH
Confidence 334444444433211 2444444 245667999999876 678888887776554
No 4
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.65 E-value=3e+02 Score=25.08 Aligned_cols=86 Identities=14% Similarity=0.203 Sum_probs=55.8
Q ss_pred HHHHHHhhCccccccHHHHHHhhccCCCcH-HHHHHHHHHHHHHHhhcCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q psy14430 9 KKINEFLSNRKYSNNLIEILACLDDVNKVK-PNTLLGIQRLFVELLKKHAMSSQTSEDQDKKIKAAEEKYKVWLRDCYKS 87 (497)
Q Consensus 9 ~l~~~ile~~~n~n~l~~Ll~~~~~~~~~~-~~a~~sL~~vF~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~wL~~~Y~~ 87 (497)
.+|..|++|+. +.++.+..+..+.++ ..|. ..|++++-+.+ ....+.|..+|..
T Consensus 146 ~lak~iL~s~~----f~~fF~yv~~~~FdiasDAf----~TfkelLt~hk-----------------~~~aefl~~Nyd~ 200 (330)
T d1upka_ 146 PLAKIILWSEQ----FYDFFRYVEMSTFDIASDAF----ATFKDLLTRHK-----------------LLSAEFLEQHYDR 200 (330)
T ss_dssp HHHHHHHHSGG----GGHHHHHTTCSSHHHHHHHH----HHHHHHHHSSH-----------------HHHHHHHHHTHHH
T ss_pred HHHHHHHccHH----HHHHHHHHcCCchHHHHHHH----HHHHHHHHhCH-----------------HHHHHHHHHhHHH
Confidence 35666666654 333444443333232 3343 44666665441 2345688999999
Q ss_pred HHHHHHHhhccCccchHHHHHHHHHHHHHhhc
Q psy14430 88 LFPKLFDILFNGESEVQIQTFSTLMHLVQGEA 119 (497)
Q Consensus 88 ~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~ 119 (497)
|.+...+++.++.--.+..++..+-+++-..+
T Consensus 201 Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~ 232 (330)
T d1upka_ 201 FFSEYEKLLHSENYVTKRQSLKLLGELLLDRH 232 (330)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhhhh
Confidence 99999999987766678889999999986443
No 5
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.80 E-value=3.8e+02 Score=24.26 Aligned_cols=159 Identities=13% Similarity=0.142 Sum_probs=91.6
Q ss_pred CCchHHHHHHHHHhhCCCCc---hhHHHHHHH-hhhcCChHHHHHHHHHHHhhh------cccchHHHHHHHHHHhcccC
Q psy14430 128 PFPEDKLQMLIKNILSSPFY---PVFVERFKE-YLSFKDVIFYSFKSMSTLLSE------NFVENEEILMNVLNFIKEIP 197 (497)
Q Consensus 128 ~F~~~ll~~lV~~Ll~~~~~---~~~i~~~~e-~~~~~dv~~~~~~~l~~~l~~------~~~~~~~~~~n~l~lL~~l~ 197 (497)
++....+..++.. .++++. +.+...+.. |.++.+.|-+..+.++..+.+ +..-..+.++-+.++++...
T Consensus 129 ~id~~Fi~~Ll~l-f~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (343)
T d2jaka1 129 YIDQKFVLQLLEL-FDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 207 (343)
T ss_dssp TSCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCC
T ss_pred hCCHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhcc
Confidence 5667788888884 444444 333333345 889999999999999877743 22346677777888888887
Q ss_pred CCCCccccccchhhhhhhccc---ccchhcchHHHHhHHHHHHHHHhccCCCChhHHHHHHHHhhhhhhccCCCc--hhh
Q psy14430 198 IPNNKEKLFPAEAKSEEFLCG---NESLALNIKDFCTFSSKIWEVLSKWKGHTSESTKLLLMVLIDKLMYYHSNP--IVI 272 (497)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~w~~~l~~~~l~~~l~~~vL~~l~~~~~p~~~~p--~~l 272 (497)
.|-+++ ...++.+ |=++....+.+-..+..+-..++. .++++...++.||.+ --|..... ..+
T Consensus 208 ~plkee--------h~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~---kDp~l~~~~i~~llk-~WP~t~~~Kev~F 275 (343)
T d2jaka1 208 LPLKEE--------HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE---KDSTLTEPVVMALLK-YWPKTHSPKEVMF 275 (343)
T ss_dssp SSCCHH--------HHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHH---HCGGGHHHHHHHHHH-SSCSSCCTTHHHH
T ss_pred CCchHH--------HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHh---cCchhHHHHHHHHHH-hCCCCCchHHHHH
Confidence 764432 1222211 222221222233334444444443 357888888888764 56766533 345
Q ss_pred HHHHHHHhcCChhHHHH-HHHHHHHHHh
Q psy14430 273 TDFLMNALSFKGPIAVL-ALQGMVNLVR 299 (497)
Q Consensus 273 ~Dfl~~~~~~~~~~sll-aL~~lF~L~~ 299 (497)
.+.+...+..-+....+ ...-+|..+.
T Consensus 276 L~el~~il~~~~~~~f~~~~~~lf~~la 303 (343)
T d2jaka1 276 LNELEEILDVIEPSEFVKIMEPLFRQLA 303 (343)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 67777777554433333 3334555543
No 6
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.23 E-value=4e+02 Score=23.77 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHhhcCC---CchhHHHHHH
Q psy14430 284 GPIAVLALQGMVNLVRQYNL---EYPNIYDKLY 313 (497)
Q Consensus 284 ~~~sllaL~~lF~L~~~~nl---d~~~FY~~LY 313 (497)
..++..||..+.+++.+.+- ....||+.-|
T Consensus 181 ~~V~~~gL~~l~~ll~n~~~~~~~~~~F~~~y~ 213 (321)
T d1w9ca_ 181 RNVADTGLQILFTLLQNVAQEEAAAQSFYQTYF 213 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 35788888888888865422 2345888888
No 7
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.10 E-value=4.5e+02 Score=23.98 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=19.8
Q ss_pred HHHHHHHHhhccCccchHHHHHHHHHHHHHh
Q psy14430 87 SLFPKLFDILFNGESEVQIQTFSTLMHLVQG 117 (497)
Q Consensus 87 ~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~ 117 (497)
.+...+..++.|....+|..|+.++..|++.
T Consensus 441 ~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~ 471 (588)
T d1b3ua_ 441 KLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence 3445556666666666777777777776654
No 8
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.39 E-value=5.3e+02 Score=24.19 Aligned_cols=260 Identities=10% Similarity=0.048 Sum_probs=117.6
Q ss_pred HHHHHHHHhhccCccchHHHHHHHHHHHHHhhcCCCCCCCCCCchHHHHHHHHHhhCCCCc--hhHHHHHHHhhhcCCh-
Q psy14430 87 SLFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFY--PVFVERFKEYLSFKDV- 163 (497)
Q Consensus 87 ~~~~~L~~~~~~~~~~~~~~al~~~~~Ll~~e~~~~~~~~~~F~~~ll~~lV~~Ll~~~~~--~~~i~~~~e~~~~~dv- 163 (497)
.+++.|..++.|.+..++..|+.+++++.+..+.. .-..+....+..++..+...... ..+++.+..|....+-
T Consensus 157 ~~~~~L~~lL~D~n~~V~~~Al~~L~~I~~~~~~~---~~~~l~~~~i~~Ll~~l~~~~~~~q~~il~~L~~~~~~~~~~ 233 (579)
T d2vglb_ 157 GFLDSLRDLIADSNPMVVANAVAALSEISESHPNS---NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE 233 (579)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC---CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH
T ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCccc---hhHHhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 46788889998888888888999998876533321 11234566677777766655433 3444444434322211
Q ss_pred HHHHHHHHHHHhhhcccchHHHHHHHH-HHhcccCCCCCccccccchhhhhhhcccccchhcchHHHHhHHHHHHHHHhc
Q psy14430 164 IFYSFKSMSTLLSENFVENEEILMNVL-NFIKEIPIPNNKEKLFPAEAKSEEFLCGNESLALNIKDFCTFSSKIWEVLSK 242 (497)
Q Consensus 164 ~~~~~~~l~~~l~~~~~~~~~~~~n~l-~lL~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~ 242 (497)
....+..+...+... .+..+..+. .++..+.......+. . ....+........++
T Consensus 234 ~~~li~~l~~~L~~~---n~~V~~~a~~~i~~~~~~~~~~~~~-------~-------------~~~~~~l~~~l~~L~- 289 (579)
T d2vglb_ 234 AQSICERVTPRLSHA---NSAVVLSAVKVLMKFLELLPKDSDY-------Y-------------NMLLKKLAPPLVTLL- 289 (579)
T ss_dssp HHHHHHHHTTCSCSS---TTHHHHHHHHHHHHSCCSCCBTTBS-------H-------------HHHHHHTHHHHHHHT-
T ss_pred HHHHHHHHHHHHcCc---hHHHHHHHHHHHHHHHhcCCcchHH-------H-------------HHHHHHhhHHHHHHh-
Confidence 111111122222111 112222222 223322221111100 0 001111112222222
Q ss_pred cCCCChhHHHHHHHHhhhh--hhccCCCchhhHHHHHHHhcCChhHHHHHHHHHHHHHhhcCCCchhHHHHHHhhhCCCc
Q psy14430 243 WKGHTSESTKLLLMVLIDK--LMYYHSNPIVITDFLMNALSFKGPIAVLALQGMVNLVRQYNLEYPNIYDKLYALLEPNI 320 (497)
Q Consensus 243 ~~~l~~~l~~~vL~~l~~~--~~p~~~~p~~l~Dfl~~~~~~~~~~sllaL~~lF~L~~~~nld~~~FY~~LY~lL~p~~ 320 (497)
.. ++++.-.+|..+..- ..|-+-.+.. +.+...++-+..+...+|..++.+....|+ ......|-..+...
T Consensus 290 s~--~~ei~y~aL~~i~~l~~~~p~~l~~~~--~~~~~~~~d~~~ik~~~L~iL~~l~~~~n~--~~Il~eL~~y~~~~- 362 (579)
T d2vglb_ 290 SG--EPEVQYVALRNINLIVQKRPEILKQEI--KVFFVKYNDPIYVKLEKLDIMIRLASQANI--AQVLAELKEYATEV- 362 (579)
T ss_dssp TS--CHHHHHHHHHHHHHHHHHCCSTTTTCT--TTTSCCTTSCHHHHHHHHHHHHHTCCSSTH--HHHHHHHHHHTTSS-
T ss_pred cC--CchHHHHHHHHHHHHHHhCHHHHHHHH--HHHHhhcCChHHHHHHHHHHHHHHcChhhH--HHHHHHHHHHhhcC-
Confidence 22 333333344443221 1222221110 111111222335677888888888766654 23444444333210
Q ss_pred cccchhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccccc
Q psy14430 321 FYTKYKARLFYLTDLLMMSTHLPEGLVASFIKRLSRLCLTAPPQDIAIMIYLIGNLVLRHKGLT 384 (497)
Q Consensus 321 ~~~~~r~~~l~L~dlflss~~~~~~rvaAFiKRL~~lsL~~pp~~~~~~L~li~~Ll~~~p~l~ 384 (497)
....|....+.+.. ++ ...+ .....++.-|+.+--...+...-.++..++++++++|+..
T Consensus 363 -d~~~~~~ai~aI~~-la-~~~~-~~~~~~i~~Ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~ 422 (579)
T d2vglb_ 363 -DVDFVRKAVRAIGR-CA-IKVE-QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKY 422 (579)
T ss_dssp -CHHHHHHHHHHHHH-HH-TTCH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSC
T ss_pred -CHHHHHHHHHHHHH-HH-HhCc-hHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhChHHH
Confidence 11222222222111 11 2222 2345566777776666667777778888999999999743
No 9
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.97 E-value=1.1e+02 Score=19.65 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHhccCCCChhHHHHHHHHhhhhhhccCCCchhhHHHHH
Q psy14430 238 EVLSKWKGHTSESTKLLLMVLIDKLMYYHSNPIVITDFLM 277 (497)
Q Consensus 238 ~~~l~~~~l~~~l~~~vL~~l~~~~~p~~~~p~~l~Dfl~ 277 (497)
+..||.+ -++..-..||.+|- +||.+++-|+.
T Consensus 7 l~tLrsP-~sP~QQqQvL~ILk-------sNP~lmaaFIk 38 (47)
T d1zoqc1 7 LRTLKSP-SSPQQQQQVLNILK-------SNPQLMAAFIK 38 (47)
T ss_dssp HHTCCSC-CCHHHHHHHHHHHH-------TCHHHHHHHHH
T ss_pred HHHhcCC-CCHHHHHHHHHHHH-------cCHHHHHHHHH
Confidence 4567888 78888999999974 58988888765
No 10
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=10.60 E-value=2.6e+02 Score=20.28 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=44.7
Q ss_pred HHHHHHhccCCCChhHHHHHHHHhhhhhhccCCCchhhHHHHHHHh---cCC-hhHHHHHHHHHHHHHhhcCC
Q psy14430 235 KIWEVLSKWKGHTSESTKLLLMVLIDKLMYYHSNPIVITDFLMNAL---SFK-GPIAVLALQGMVNLVRQYNL 303 (497)
Q Consensus 235 ~~w~~~l~~~~l~~~l~~~vL~~l~~~~~p~~~~p~~l~Dfl~~~~---~~~-~~~sllaL~~lF~L~~~~nl 303 (497)
.+-..++... -...++ ....+.++++-.=..|..+.+.+...+ +.+ +.-...++..|.++|.++++
T Consensus 13 ~iL~~Yl~~~-~E~~Ly--~~~~fsre~iek~IsPEeIV~iHk~~l~el~~~~~e~v~~Sfd~LlEVm~gyG~ 82 (84)
T d1w53a_ 13 QLLSRYIAEL-TETSLY--QAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPEDVFHSLDFLIEVMIGYGM 82 (84)
T ss_dssp HHHHHHHHHC-CHHHHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHcCc
Confidence 3333444444 223444 566777888888888999999888876 344 24567899999999888764
Done!