RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14430
(497 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.6 bits (175), Expect = 3e-13
Identities = 91/495 (18%), Positives = 160/495 (32%), Gaps = 183/495 (36%)
Query: 7 LKKKINEFLSNRKY-SNNLIEILACLDDVNKVKPNTLLGIQRLFVELLKKHAMSSQTSED 65
L + EF Y N D+ HA++++ ++
Sbjct: 84 LNLCLTEF--ENCYLEGN---------DI---------------------HALAAKLLQE 111
Query: 66 QDKKIKAAEEKYKVWLRDCYKSLFPKLFDILFNGESEVQIQTFSTLMHLVQ-GEAK-YPI 123
D + K K ++ Y + ++ S L V G A+ I
Sbjct: 112 NDTTL----VKTKELIK-NY-------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 124 -----TLSKPFPEDKLQMLIKNILSSPFYPVFVERFKEYLSFKDVIFYSFKSMSTLLSEN 178
F E L+ L + Y V V D+I +S +++S L+
Sbjct: 160 FGGQGNTDDYFEE--LRDLYQT------YHVLVG---------DLIKFSAETLSELIRTT 202
Query: 179 FVENEEIL---MNVLNFIKEIPIPNNKEKLFPAEAKSEEFLCGNE-SLALN-IKDFCTF- 232
++ E++ +N+L +++ P+ +++L S L + +
Sbjct: 203 -LDAEKVFTQGLNILEWLEN-----------PSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 233 -SSKIW-----EVLSKWKGHTSESTKLLLMVLIDKLMYYHSNPIVITDFLMNALSFKGPI 286
++K+ E+ S KG T S L+ V I + F ++ I
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI-------AETDSWESFFVSVRKA---I 300
Query: 287 AVLALQGMVNLVR-QYNLEYPNIYDKLYALLEPNIFYTKYKARLFYLTDLL--------- 336
VL G VR YPN L P+I L D L
Sbjct: 301 TVLFFIG----VRCY--EAYPNTS------LPPSI-----------LEDSLENNEGVPSP 337
Query: 337 MMS-THLPEGLVASFIKRL-SRLCLTAPPQDIAIMIYLI-G--NLV-------LRHKGLT 384
M+S ++L + V ++ + S L P + I L+ G NLV L GL
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHL-----PAGKQVEISLVNGAKNLVVSGPPQSLY--GLN 390
Query: 385 ILFQNSDATMLEDD---PFDAKQED----------PYHTNALKSS-------------LW 418
+ + + A D PF ++ P+H++ L + +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 419 EIKMLQNHPLY-TVN 432
K +Q P+Y T +
Sbjct: 451 NAKDIQ-IPVYDTFD 464
Score = 31.9 bits (72), Expect = 0.55
Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 69/144 (47%)
Query: 107 TFSTLMHLV---------------QGEAKY------PITLSKPFPEDKLQMLIKNILSSP 145
+ +L+ +V G + Y P ++ F ++ LQ +++ +
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 146 FYPVFVERFKEYLSFKDVIFYSFKSMSTLLSENF-VENE-----------EILMNVLNFI 193
+ V + V N+ VEN+ + + NVLNFI
Sbjct: 1838 GWLVEI-----------V--------------NYNVENQQYVAAGDLRALDTVTNVLNFI 1872
Query: 194 KEIPIPNN-----------KEKLF 206
K I + LF
Sbjct: 1873 KLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 31.9 bits (72), Expect = 0.55
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 26/109 (23%)
Query: 343 PEGLVASFIKRLSRLCLTAPPQDIAIMIYLIGNLVLRHKGLTILFQNSD-----ATMLED 397
P LV F+ +S L P + ++ NL L L N D A +L++
Sbjct: 57 PAELVGKFLGYVSSL---VEPSKVGQFDQVL-NLCLTEFENCYLEGN-DIHALAAKLLQE 111
Query: 398 DP-------------FDAKQ--EDPYHTNALKSSLWEIKMLQNHPLYTV 431
+ A+ + P+ S+L+ N L +
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPF-DKKSNSALFRAVGEGNAQLVAI 159
Score = 31.6 bits (71), Expect = 0.80
Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 97/236 (41%)
Query: 82 RDCYKSLFP---KLFDILFNGESEVQIQT---FSTLMHLVQGEAKYPITLSKPFPEDKLQ 135
D YK+ +++ ++ + FS ++ +V P+ L+ F +K +
Sbjct: 1633 MDLYKT-SKAAQDVWN-----RADNHFKDTYGFS-ILDIVI---NNPVNLTIHFGGEKGK 1682
Query: 136 MLIKNILSSPFYPVFVERFKEYLSFKDVIFYSFKSMSTLLSENFVENEEILMNVLNFIKE 195
+ +N Y + F+++ + ++ E+I +
Sbjct: 1683 RIREN----------------YSAMI------FETIV----DGKLKTEKIFKEINEHSTS 1716
Query: 196 IPIPNNKEKLF------PAEAKSEEFLCGNESLALNIKDFCTFSSKIWEVLSKWKGHTSE 249
+ K L PA L +E L G
Sbjct: 1717 YTFRSEKGLLSATQFTQPA-------------LT-------LMEKAAFEDLKSK-G---- 1751
Query: 250 STKLLLMVLIDKLMYY--HSNPIVITDFL--MNAL-SFKGPIAVLALQGMVNLVRQ 300
LI + HS L AL S V++++ +V +V
Sbjct: 1752 --------LIPADATFAGHS--------LGEYAALASLAD---VMSIESLVEVVFY 1788
Score = 29.6 bits (66), Expect = 3.2
Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 19/109 (17%)
Query: 386 LFQNSDATMLEDDPFDAKQEDPYHTNALKSSLWEIKMLQNHPLYTVNVPA---RFINNPL 442
L++ S A D ++ + D + + S+ +I ++ N T++ + I
Sbjct: 1635 LYKTSKAA---QDVWN--RADNHFKDTYGFSILDI-VINNPVNLTIHFGGEKGKRIRE-- 1686
Query: 443 PNVEWDLGNYLEVNYDEIFNKEFKKKQKNISTNFEKPSDMFQPTVTKLF 491
NY + ++ I + + K ++ N S F+ L
Sbjct: 1687 --------NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 1e-09
Identities = 75/445 (16%), Positives = 134/445 (30%), Gaps = 150/445 (33%)
Query: 129 FPEDKLQMLIKNILSSPFYPVFVERFKEYLSFKDVIFYSFKSMSTLLSENFVENEEILMN 188
F + Q K+IL VF + F + KDV ++LS+ E + I+M+
Sbjct: 9 FETGEHQYQYKDIL-----SVFEDAFVDNFDCKDVQ----DMPKSILSKE--EIDHIIMS 57
Query: 189 VLNFIKEIPIPNNKEK---LF-----PAEAKSEEFLCGNESLALNIKDFCTFSSKIWEVL 240
+ LF E ++F+ E L +N K + ++
Sbjct: 58 ----------KDAVSGTLRLFWTLLSKQEEMVQKFV--EEVLRINYK---------F-LM 95
Query: 241 SKWKGHTSESTKLLLMVL--IDKLMYYHSNPIVITDF---------LMNALSFKGPIAVL 289
S K + + + M + D+L Y+ N + L AL P +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 290 ALQGM---------VNLVRQYNLE--YPN-IY-----------------DKLYALLEPNI 320
+ G+ +++ Y ++ I+ KL ++PN
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 321 -----FYTKYKARLFYLTD---LLMMSTHLPEGLV-------ASFIKRLSRLC---LTAP 362
+ K R+ + L+ S L+ A + C LT
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT- 272
Query: 363 PQDIAIMIYLIGN------LVLRHKGLTI-----LFQNSDATMLEDDPFDAKQEDPYHTN 411
+ + +L L LT L L+ P D +E
Sbjct: 273 -RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----LKYLDCRPQDLPRE------ 321
Query: 412 ALKSSLWEIKMLQNHPLYTVNVPARFINNPLPNVEWDLGNYLEVNYDEIFNKEFKKKQKN 471
+L +P + + WD N+ VN D+ +
Sbjct: 322 ----------VLTTNPRRLSIIAESIRDGLA---TWD--NWKHVNCDK-LTTIIES---- 361
Query: 472 ISTNFEKPSDMFQPTVTKLFDHFSL 496
S N +P++ K+FD S+
Sbjct: 362 -SLNVLEPAEY-----RKMFDRLSV 380
Score = 54.5 bits (130), Expect = 6e-08
Identities = 60/420 (14%), Positives = 120/420 (28%), Gaps = 147/420 (35%)
Query: 6 NLKKKINEFLSNRKYSNNLIEILACLDDVNKVKPNTLLGIQRLFVELLKKHAMSSQTSED 65
+++ ++ L ++ Y N L+ + L +V
Sbjct: 229 SIQAELRRLLKSKPYENCLL-V---LLNV------------------------------- 253
Query: 66 QDKKIKAAEEKYKVWLRDCYKSLFPKLFDILFNGESEVQIQT-FSTLMHLVQGEAKYPIT 124
Q+ K A FN ++ + T F + + I+
Sbjct: 254 QNAKAWNA-----------------------FNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 125 L---SKPFPEDKLQMLIKNILS-------------SPFY-PVFVERFKEYLS----FKDV 163
L S D+++ L+ L +P + E ++ L+ +K V
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 164 IFYSFKSM--STLLSENFVENEEILMNVLNFIKEIPIPNNKEKLF------PAEAKSEEF 215
++ S+L E ++ + F IP L ++
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP---TILLSLIWFDVIKSDVMVV 407
Query: 216 LCGNESLALNIKDFCTFSSKIWEVLSKWKGHTSESTKL------------------LLMV 257
+ +L K + I + + K L L+
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 258 LIDKLMY----YH-----------SNPIVITD--FLMNALSFKGPIAVLALQGMVNLV-- 298
+D+ Y +H +V D FL + A A ++N +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST-AWNASGSILNTLQQ 526
Query: 299 ----RQYNLEYPNIYDKL-YALL------EPNIFYTKYKARLFYLTDLLMMSTHLPEGLV 347
+ Y + Y++L A+L E N+ +KY TDLL ++ + +
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-------TDLLRIALMAEDEAI 579
Score = 54.1 bits (129), Expect = 7e-08
Identities = 88/551 (15%), Positives = 168/551 (30%), Gaps = 165/551 (29%)
Query: 31 LDDVNKVKPNTLLGIQRLFVELLKKHAMSSQTSEDQDKKIKAAEEKYKVWLRDCYKSLF- 89
+D + + + G RLF LL K Q Q + YK +L K+
Sbjct: 51 IDHIIMS-KDAVSGTLRLFWTLLSK-----QEEMVQKFVEEVLRINYK-FLMSPIKTEQR 103
Query: 90 -PKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLIKNILSSPFYP 148
P + ++ I+ L + Q AKY ++ +P+ KL+ + + +
Sbjct: 104 QPSMMTRMY-------IEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQALLELRPAKN-- 152
Query: 149 VFV------------------ERFKEYLSFKDVIFY-SFKSMSTLLSENFVENEEILMNV 189
V + + + + FK IF+ + K+ ++ E +L +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNCNS--------PETVLEML 202
Query: 190 LNFIKEI---------PIPNNKEKLFPAEAKSEEFLCG---NESL-------------AL 224
+ +I N K ++ +A+ L L A
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 225 NIKDFC-----TFSSKIWEVLS-----------KWKGHT-SESTKLLLMVL---IDKL-- 262
N+ C T ++ + LS T E LLL L L
Sbjct: 263 NLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 263 MYYHSNPIVITDFLMNALSFKGPIAVLALQGMVNLVRQYNLE-YPNIYDKLYALLEPNIF 321
+NP ++ + A S + +A + + N + I + +LEP +
Sbjct: 321 EVLTTNPRRLS---IIAESIRDGLA------TWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 322 YTKYKARLFYLTDLLMMSTHLPEGLVASFIKRLSRLCLTAPPQDIAIMIYLIGNLVLRHK 381
+ L S H+P LS + D+ +++ L
Sbjct: 372 RKMFDR-LSVFPP----SAHIPT-------ILLSLIWFDVIKSDVMVVVNK-----LHKY 414
Query: 382 GLTILFQNSDATMLEDDPFDAKQEDPY----HTNALKSSLWEIKMLQNHPLYTVNVPARF 437
L + + K + H + + +H Y N+P F
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH-----------RSIVDH--Y--NIPKTF 459
Query: 438 INNPLPNVEWDLGNYL---------EVNYDE---IFNKEF------KKKQKNISTNFEKP 479
++ L D Y + + E +F F ++K ++ ST +
Sbjct: 460 DSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 480 SDMFQPTVTKL 490
+ T+ +L
Sbjct: 518 GSIL-NTLQQL 527
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.39
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 5/22 (22%)
Query: 351 IKRL-SRLCLTAP---PQDIAI 368
+K+L + L L A P +AI
Sbjct: 22 LKKLQASLKLYADDSAPA-LAI 42
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB:
3u44_A*
Length = 1232
Score = 31.1 bits (70), Expect = 1.1
Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 25/178 (14%)
Query: 19 KYSNNLIEILACLDDVNKVKPNTLLGIQRLFVELLKKHAMSSQTSEDQDKKIKAAEEKYK 78
++N ++ LA +D++ + + + + + K A + + E + A +
Sbjct: 252 PRADNFLDDLAQIDELIQ-HQDDFSELYKRVPAVSFKRAKAVKGDEFDPALLDEATD--- 307
Query: 79 VWLRDCYKSLFPKLFDILFNGESEVQIQTFSTLMHLVQGEAKYPITLSKPFPEDKLQMLI 138
LR+ K L KL F E +++ + + +++ + I+ K F K +
Sbjct: 308 --LRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVISYGKRFEAAKQE--- 362
Query: 139 KNILSSPFYPVFVERFKEYLSFKDVIFYSFKSMSTLLSENFVENEEILMNVLNFIKEI 196
K + F D+ Y ++ + E E E+
Sbjct: 363 ----------------KSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQFHEV 404
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine
hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1
c.40.1.1
Length = 349
Score = 29.4 bits (67), Expect = 2.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 341 HLPEGLVASFIKRLSRLC 358
H+P G SF +RL++LC
Sbjct: 190 HMPPGFTRSFAERLNKLC 207
>1chd_A CHEB methylesterase; chemotaxis protein, serine hydrolase, carboxyl
methylesteras; 1.75A {Salmonella typhimurium} SCOP:
c.40.1.1
Length = 203
Score = 28.6 bits (65), Expect = 3.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 341 HLPEGLVASFIKRLSRLC 358
H+P G SF +RL++LC
Sbjct: 44 HMPPGFTRSFAERLNKLC 61
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 29.0 bits (64), Expect = 4.3
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 49 FVELLKKHAMSSQTSEDQDKKIKAAEEKYKVWLRDCYKSLFPKLFDILFNGESEVQIQTF 108
F +LL+ +S + +E + K D + +L + ++++ +
Sbjct: 6 FAQLLENSILSPDQNI-----RLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRIL 60
Query: 109 STLM 112
+ L
Sbjct: 61 AALT 64
>3sft_A CHEB, chemotaxis response regulator protein-glutamate
methylesterase; modified doubly-wound/fold,
chemoreceptor; 2.15A {Thermotoga maritima}
Length = 193
Score = 27.8 bits (63), Expect = 6.6
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 341 HLPEGLVASFIKRLSRLC 358
H+P G S RL
Sbjct: 42 HMPPGFTKSLAMRLDSTS 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.400
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,416,643
Number of extensions: 440566
Number of successful extensions: 921
Number of sequences better than 10.0: 1
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 26
Length of query: 497
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 399
Effective length of database: 3,965,535
Effective search space: 1582248465
Effective search space used: 1582248465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)