RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14430
         (497 letters)



>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein
           ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 121

 Score = 26.9 bits (59), Expect = 2.4
 Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 6/105 (5%)

Query: 45  IQRLFVELLKKHAMSSQTSEDQDKKIKAAEEKYK--VWLRDCYKSLFPKLFDILFNGESE 102
            +     + +        + D  +  +   E     V +          L       ++ 
Sbjct: 14  TRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQAN 73

Query: 103 VQI---QTFSTLMHLVQG-EAKYPITLSKPFPEDKLQMLIKNILS 143
           V +         +  + G E      ++KPF   +L +  +N+LS
Sbjct: 74  VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 118


>d1m1ca_ e.42.1.1 (A:) L-A virus major coat protein {Saccharomyces
           cerevisiae virus L-A [TaxId: 11008]}
          Length = 651

 Score = 27.6 bits (61), Expect = 3.7
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 236 IWEVLSKWKGHTSESTKLLLMVLIDKLMYYHSNPIVITDFLMNAL----SFKGPIAVLAL 291
           +  ++SKW   T+ +       L DK  Y H+  +   D  +        F+ P + + L
Sbjct: 214 VLMMMSKWHRRTNLAIDYEAPQLADKFAYRHALTVQDADEWIEGDRTDDQFRPPSSKVML 273

Query: 292 QGMVNLVRQYNLEY 305
             +   V    L  
Sbjct: 274 SALRKYVNHNRLYN 287


>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human
           papillomavirus type 16 [TaxId: 333760]}
          Length = 455

 Score = 26.6 bits (59), Expect = 8.0
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 11/49 (22%)

Query: 387 FQNSDATMLEDDPFDAKQEDPYHTNALKSSLWEIKM-------LQNHPL 428
           F  S A   +     A +EDP      K + WE+ +       L   PL
Sbjct: 401 FVTSQAIACQKHTPPAPKEDPLK----KYTFWEVNLKEKFSADLDQFPL 445


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,840,221
Number of extensions: 88587
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 11
Length of query: 497
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 408
Effective length of database: 1,185,626
Effective search space: 483735408
Effective search space used: 483735408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)