RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14431
(1219 letters)
>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase 15.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 15 (MAPK15) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK15 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. Human MAPK15 is also called
Extracellular signal Regulated Kinase 8 (ERK8) while the
rat protein is called ERK7. ERK7 and ERK8 display both
similar and different biochemical properties. They
autophosphorylate and activate themselves and do not
require upstream activating kinases. ERK7 is
constitutively active and is not affected by
extracellular stimuli whereas ERK8 shows low basal
activity and is activated by DNA-damaging agents. ERK7
and ERK8 also have different substrate profiles. Genome
analysis shows that they are orthologs with similar gene
structures. ERK7 and ERK 8 may be involved in the
signaling of some nuclear receptor transcription
factors. ERK7 regulates hormone-dependent degradation of
estrogen receptor alpha while ERK8 down-regulates the
transcriptional co-activation androgen and
glucocorticoid receptors.
Length = 337
Score = 373 bits (959), Expect = e-119
Identities = 136/242 (56%), Positives = 180/242 (74%), Gaps = 11/242 (4%)
Query: 549 IDQLMKDREDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYR 608
ID+ + + ++ Q++ GKGAYGIV+KA D+ K+ VA+KKIF+AFRN TDAQRT+R
Sbjct: 1 IDKHILRKYEILQKL-----GKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFR 55
Query: 609 EILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQ 668
EI+FL+ HPNI+ +L++ KA N+KD+Y+VFEYME DL+ VIR IL+DVH RYIM+Q
Sbjct: 56 EIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYMETDLHAVIRANILEDVHKRYIMYQ 115
Query: 669 LCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKEC-----LTEYIAT 723
L L YIH+ V+HRDLKPSNIL++ C +K+ D GLARSLS+ +E LT+Y+AT
Sbjct: 116 LLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVAT 175
Query: 724 RWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPH 783
RWYRAPEIL+ + RYT VD+WS+GCIL EML KPLFPG ST +QL+ I+ ++ P
Sbjct: 176 RWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVI-GPPSA 234
Query: 784 AD 785
D
Sbjct: 235 ED 236
>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase (MAPK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MAPK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAPKs serve as important
mediators of cellular responses to extracellular
signals. They control critical cellular functions
including differentiation, proliferation, migration, and
apoptosis. They are also implicated in the pathogenesis
of many diseases including multiple types of cancer,
stroke, diabetes, and chronic inflammation. Typical MAPK
pathways involve a triple kinase core cascade comprising
of the MAPK, which is phosphorylated and activated by a
MAPK kinase (MAP2K or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAP3K or MKKK). Each cascade is activated either by a
small GTP-binding protein or by an adaptor protein,
which transmits the signal either directly to a MAP3K to
start the triple kinase core cascade or indirectly
through a mediator kinase, a MAP4K. There are three main
typical MAPK subfamilies: Extracellular signal-Regulated
Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38.
Some MAPKs are atypical in that they are not regulated
by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7.
Length = 330
Score = 311 bits (798), Expect = 2e-96
Identities = 111/216 (51%), Positives = 144/216 (66%), Gaps = 8/216 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G GAYG+V A DK + VAIKKI F + DA+R REI L+ RH NII +LDI
Sbjct: 9 GSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHL-RHENIIGLLDI 67
Query: 629 YKAVNN---KDLYVVFEYMENDLNKVIRDKI-LKDVHIRYIMFQLCNGLSYIHACKVMHR 684
+ + D+Y+V E ME DL+KVI+ L D HI+Y ++Q+ GL Y+H+ V+HR
Sbjct: 68 LRPPSPEDFNDVYIVTELMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHR 127
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSL---SDSKECLTEYIATRWYRAPEILISNRRYTHH 741
DLKPSNIL++ +C +KI D GLAR + D K LTEY+ TRWYRAPE+L+S+ RYT
Sbjct: 128 DLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKA 187
Query: 742 VDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV 777
+DIWS+GCI AE+L KPLFPG QL LIV ++
Sbjct: 188 IDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVL 223
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1
(BMK1) or MAPK7, has a unique C-terminal extension,
making it approximately twice as big as other MAPKs.
This extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation by
the MAP2K MEK5, which in turn is regulated by the MAP3Ks
MEKK2 and MEKK3. Activated ERK5 phosphorylates its
targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is essential
for cardiovascular development and plays an important
role in angiogenesis. It is also critical for neural
differentiation and survival. The ERK5 pathway has been
implicated in the pathogenesis of many diseases
including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 269 bits (689), Expect = 4e-81
Identities = 109/216 (50%), Positives = 150/216 (69%), Gaps = 8/216 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G GAYG+V A D + + VAIKKI AF T A+RT RE+ L+ F +H NII + DI
Sbjct: 14 GSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHF-KHDNIIAIRDI 72
Query: 629 YKAVNN--KDLYVVFEYMENDLNKVIR-DKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
+ KD+YVV + ME+DL+ +I D+ L + HIRY ++QL GL YIH+ V+HRD
Sbjct: 73 LRPPGADFKDVYVVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRD 132
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDS----KECLTEYIATRWYRAPEILISNRRYTHH 741
LKPSN+L+++ C ++IGD G+AR LS S K +TEY+ATRWYRAPE+L+S YT
Sbjct: 133 LKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTA 192
Query: 742 VDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV 777
+D+WS+GCI AEML + LFPG + HQL+LI++++
Sbjct: 193 IDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVL 228
>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), CMGC family, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CMGC family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The CMGC family consists of Cyclin-Dependent
protein Kinases (CDKs), Mitogen-activated protein
kinases (MAPKs) such as Extracellular signal-regulated
kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38,
and similar proteins. CDKs belong to a large subfamily
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. MAPKs
serve as important mediators of cellular responses to
extracellular signals. They control critical cellular
functions including differentiation, proliferation,
migration, and apoptosis. They are also implicated in
the pathogenesis of many diseases including multiple
types of cancer, stroke, diabetes, and chronic
inflammation.
Length = 283
Score = 265 bits (679), Expect = 1e-80
Identities = 103/228 (45%), Positives = 142/228 (62%), Gaps = 6/228 (2%)
Query: 564 NLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNII 623
L K G+G YG+VYKA DK + VAIKKI F ++ + REI LK HPNII
Sbjct: 3 KLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKEL-NHPNII 61
Query: 624 TMLDIYKAVNNKDLYVVFEYMENDLNKVIRD--KILKDVHIRYIMFQLCNGLSYIHACKV 681
+LD+++ DLY+VFE+M+ DL K+I+D + L + I+ ++QL GL++ H+ +
Sbjct: 62 KLLDVFRH--KGDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGI 119
Query: 682 MHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHH 741
+HRDLKP N+LI+ +K+ D GLARS T Y+ TRWYRAPE+L+ ++ Y+
Sbjct: 120 LHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTP 179
Query: 742 VDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVN-LVRPNPPHADKFY 788
VDIWS+GCI AE+L +PLFPG S QL I L P+P KF
Sbjct: 180 VDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFT 227
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), Extracellular
signal-regulated kinases 1 and 2 (ERK1/2) and Fus3
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
the mitogen-activated protein kinases (MAPKs) ERK1,
ERK2, baker's yeast Fus3, and similar proteins. MAPK
pathways are important mediators of cellular responses
to extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate in
transcriptional regulation of many cellular processes.
They regulate cell growth, cell proliferation, and cell
cycle progression from G1 to S phase. Although the
distinct roles of ERK1 and ERK2 have not been fully
determined, it is known that ERK2 can maintain most
functions in the absence of ERK1, and that the deletion
of ERK2 is embryonically lethal. The MAPK, Fus3,
regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 262 bits (672), Expect = 9e-79
Identities = 111/236 (47%), Positives = 151/236 (63%), Gaps = 11/236 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+GAYG+V A K VAIKKI F ++T QRT REI L+ F +H NII +LDI
Sbjct: 14 GEGAYGMVCSATHKPTGVKVAIKKI-SPFEHQTFCQRTLREIKILRRF-KHENIIGILDI 71
Query: 629 YKAVNN---KDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
+ + D+Y+V E ME DL K+I+ + L + HI+Y ++Q+ GL YIH+ V+HRD
Sbjct: 72 IRPPSFESFNDVYIVQELMETDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSANVLHRD 131
Query: 686 LKPSNILIDKSCSIKIGDLGLARS---LSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
LKPSN+L++ +C +KI D GLAR D LTEY+ATRWYRAPEI+++++ YT +
Sbjct: 132 LKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAI 191
Query: 743 DIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKHERE 798
DIWS+GCILAEML ++PLFPG HQL LI+ ++ P + S R
Sbjct: 192 DIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVL--GTPSQEDLN-CIISLRARN 244
>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TEY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TEY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TEY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. There are two subtypes
of plant MAPKs based on the conserved phosphorylation
motif present in the activation loop, TEY and TDY. This
subfamily represents the TEY subtype and is further
subdivided into three groups (A, B, and C). Group A is
represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4
(NtNTF4), among others. They are mostly involved in
environmental and hormonal responses. AtMPK3 and AtMPK6
are also key regulators for stomatal development and
patterning. Group B is represented by AtMPK4, AtMPK13,
and NtNTF6, among others. They may be involved in both
cell division and environmental stress response. AtMPK4
also participates in regulating innate immunity. Group C
is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa
MAPK4 (OsMAPK4), among others. They may also be involved
in stress responses. AtMPK1 and AtMPK2 are activated
following mechanical injury and in the presence of
stress chemicals such as jasmonic acid, hydrogen
peroxide and abscisic acid. OsMAPK4 is also called
OsMSRMK3 for Multiple Stress-Responsive MAPK3.
Length = 337
Score = 253 bits (649), Expect = 9e-76
Identities = 104/213 (48%), Positives = 145/213 (68%), Gaps = 5/213 (2%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+GAYGIV A + + VAIKKI AF N+ DA+RT REI L+ H N+I + DI
Sbjct: 14 GRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHL-DHENVIAIKDI 72
Query: 629 YKAVNN---KDLYVVFEYMENDLNKVIR-DKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
+ D+Y+V+E M+ DL+++IR + L D H +Y ++QL GL YIH+ V+HR
Sbjct: 73 MPPPHREAFNDVYIVYELMDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLHR 132
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
DLKPSN+L++ +C +KI D GLAR+ S+ + +TEY+ TRWYRAPE+L++ YT +D+
Sbjct: 133 DLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDV 192
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV 777
WS+GCI AE+L KPLFPG HQL+LI L+
Sbjct: 193 WSVGCIFAELLGRKPLFPGKDYVHQLKLITELL 225
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 248 bits (636), Expect = 1e-74
Identities = 95/213 (44%), Positives = 128/213 (60%), Gaps = 17/213 (7%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQR------TYREILFLKSFQRHPNI 622
G+G YG+VYKA DK + VA+KKI + D + REI LK + HPNI
Sbjct: 8 GEGTYGVVYKARDKKTGEIVALKKI------RLDNEEEGIPSTALREISLLKELK-HPNI 60
Query: 623 ITMLDIYKAVNNKDLYVVFEYMENDLNKVI--RDKILKDVHIRYIMFQLCNGLSYIHACK 680
+ +LD+ + LY+VFEY + DL K + R L I+ IM+QL GL+Y H+ +
Sbjct: 61 VKLLDVI--HTERKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHR 118
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTH 740
++HRDLKP NILI++ +K+ D GLAR+ T + T WYRAPEIL+ ++ Y+
Sbjct: 119 ILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYST 178
Query: 741 HVDIWSLGCILAEMLQSKPLFPGASTSHQLQLI 773
VDIWS+GCI AEM+ KPLFPG S QL I
Sbjct: 179 AVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKI 211
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 244 bits (626), Expect = 1e-73
Identities = 85/225 (37%), Positives = 123/225 (54%), Gaps = 11/225 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+G++G VY A DK + VAIK I + K D +R REI LK +HPNI+ + D+
Sbjct: 8 GEGSFGKVYLARDKKTGKLVAIKVIKKKKIKK-DRERILREIKILKKL-KHPNIVRLYDV 65
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVIRDK-ILKDVHIRYIMFQLCNGLSYIHACKVMHRDL 686
+ + LY+V EY E DL +++ + L + R+ + Q+ + L Y+H+ ++HRDL
Sbjct: 66 F--EDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQILSALEYLHSKGIVHRDL 123
Query: 687 KPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIWS 746
KP NIL+D+ +K+ D GLAR L E LT ++ T Y APE+ + + Y VDIWS
Sbjct: 124 KPENILLDEDGHVKLADFGLARQLDPG-EKLTTFVGTPEYMAPEV-LLGKGYGKAVDIWS 181
Query: 747 LGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGF 791
LG IL E+L KP FPG QL + + P
Sbjct: 182 LGVILYELLTGKPPFPG---DDQLLELFKKIGKPKPPFPPPEWDI 223
>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase,
p38 Mitogen-Activated Protein Kinase. Serine/Threonine
Kinases (STKs), p38 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The p38 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. p38 kinases are
mitogen-activated protein kinases (MAPKs), serving as
important mediators of cellular responses to
extracellular signals. They function in the regulation
of the cell cycle, cell development, cell
differentiation, senescence, tumorigenesis, apoptosis,
pain development and pain progression, and immune
responses. p38 kinases are activated by the MAPK kinases
MKK3 and MKK6, which in turn are activated by upstream
MAPK kinase kinases including TAK1, ASK1, and MLK3, in
response to cellular stresses or inflammatory cytokines.
p38 substrates include other protein kinases and factors
that regulate transcription, nuclear export, mRNA
stability and translation. p38 kinases are drug targets
for the inflammatory diseases psoriasis, rheumatoid
arthritis, and chronic pulmonary disease. Vertebrates
contain four isoforms of p38, named alpha, beta, gamma,
and delta, which show varying substrate specificity and
expression patterns. p38alpha and p38beta are
ubiquitously expressed, p38gamma is predominantly found
in skeletal muscle, and p38delta is found in the heart,
lung, testis, pancreas, and small intestine.
Length = 343
Score = 245 bits (628), Expect = 1e-72
Identities = 106/272 (38%), Positives = 162/272 (59%), Gaps = 13/272 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G GAYG V A+D + VAIKK+ F++ A+RTYRE+ LK H N+I +LD+
Sbjct: 24 GSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHM-DHENVIGLLDV 82
Query: 629 Y---KAVNN-KDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
+ ++ + +D+Y+V M DLN +++ + L D HI+++++Q+ GL YIH+ ++HR
Sbjct: 83 FTPASSLEDFQDVYLVTHLMGADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSAGIIHR 142
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
DLKPSNI +++ C +KI D GLAR D +T Y+ATRWYRAPEI+++ Y VDI
Sbjct: 143 DLKPSNIAVNEDCELKILDFGLARHTDDE---MTGYVATRWYRAPEIMLNWMHYNQTVDI 199
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV-RPNPPHADKFYAGFKSKHEREKFNQV 803
WS+GCI+AE+L K LFPG+ QL+ I+NLV P+ ++ S+ R +
Sbjct: 200 WSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPD----EELLQKISSESARNYIQSL 255
Query: 804 VVKCQKELQELQSQVVEENTSKLKLQMELDSK 835
+K+ +E+ S L+ + LD
Sbjct: 256 PQMPKKDFKEVFSGANPLAIDLLEKMLVLDPD 287
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 237 bits (606), Expect = 8e-71
Identities = 84/216 (38%), Positives = 119/216 (55%), Gaps = 5/216 (2%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G G++G VYKA K + VA+K + + Q REI L+ HPNI+ ++D
Sbjct: 8 GSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLS-HPNIVRLIDA 66
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVIR-DKILKDVHIRYIMFQLCNGLSYIHACKVMHRDL 686
+ + LY+V EY E DL + L + + I Q+ GL Y+H+ ++HRDL
Sbjct: 67 F--EDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHSNGIIHRDL 124
Query: 687 KPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIWS 746
KP NIL+D++ +KI D GLA+ L S LT ++ T WY APE+L+ Y VD+WS
Sbjct: 125 KPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWS 184
Query: 747 LGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP 782
LG IL E+L KP F G + QLQLI ++ P
Sbjct: 185 LGVILYELLTGKPPFSGENILDQLQLIRRILGPPLE 220
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 7.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 7 (CDK7) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK7 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK7
plays essential roles in the cell cycle and in
transcription. It associates with cyclin H and MAT1 and
acts as a CDK-Activating Kinase (CAK) by phosphorylating
and activating cell cycle CDKs (CDK1/2/4/6). In the
brain, it activates CDK5. CDK7 is also a component of
the general transcription factor TFIIH, which
phosphorylates the C-terminal domain (CTD) of RNA
polymerase II when it is bound with unphosphorylated
DNA, as present in the pre-initiation complex. Following
phosphorylation, the CTD dissociates from the DNA which
allows transcription initiation.
Length = 298
Score = 230 bits (589), Expect = 5e-68
Identities = 92/210 (43%), Positives = 122/210 (58%), Gaps = 8/210 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTD---AQRTYREILFLKSFQRHPNIITM 625
G+G Y +VYKA DK + VAIKKI R + REI L+ +HPNII +
Sbjct: 9 GEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQEL-KHPNIIGL 67
Query: 626 LDIYKAVNNKDLYVVFEYMENDLNKVIRDK--ILKDVHIRYIMFQLCNGLSYIHACKVMH 683
LD++ +N + +VFE+ME DL KVI+DK +L I+ M GL Y+H+ ++H
Sbjct: 68 LDVFGHKSN--INLVFEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILH 125
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVD 743
RDLKP+N+LI +K+ D GLARS +T + TRWYRAPE+L R Y VD
Sbjct: 126 RDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVD 185
Query: 744 IWSLGCILAEMLQSKPLFPGASTSHQLQLI 773
+WS+GCI AE+L P PG S QL I
Sbjct: 186 MWSVGCIFAELLLRVPFLPGDSDIDQLGKI 215
>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ
cell-Associated Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Male germ
cell-Associated Kinase (MAK)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of human MAK and
MAK-related kinase (MRK), Saccharomyces cerevisiae
Ime2p, Schizosaccharomyces pombe Mei4-dependent protein
3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5,
Arabidopsis thaliana MHK, and similar proteins. These
proteins play important roles during meiosis. MAK is
highly expressed in testicular cells specifically in the
meiotic phase, but is not essential for spermatogenesis
and fertility. It functions as a coactivator of the
androgen receptor in prostate cells. MRK, also called
Intestinal Cell Kinase (ICK), is expressed ubiquitously,
with highest expression in the ovary and uterus. A
missense mutation in MRK causes
endocrine-cerebro-osteodysplasia (ECO), suggesting that
this protein plays an important role in the development
of many organs. MAK and MRK may be involved in
regulating cell cycle and cell fate. Ime2p is a
meiosis-specific kinase that is important during meiotic
initiation and during the later stages of meiosis. Mde3
functions downstream of the transcription factor Mei-4
which is essential for meiotic prophase I.
Length = 283
Score = 228 bits (585), Expect = 1e-67
Identities = 88/209 (42%), Positives = 131/209 (62%), Gaps = 7/209 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G G +G VY A +K + VAIKK+ + F + + RE+ L+ HPNI+ + ++
Sbjct: 8 GDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNL-REVKSLRKLNEHPNIVKLKEV 66
Query: 629 YKAVNNKDLYVVFEYMENDLNKVIRD---KILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
++ N +LY VFEYME +L ++++D K + IR I++Q+ GL++IH HRD
Sbjct: 67 FR--ENDELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRD 124
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LKP N+L+ +KI D GLAR + S+ T+Y++TRWYRAPEIL+ + Y+ VDIW
Sbjct: 125 LKPENLLVSGPEVVKIADFGLAREI-RSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIW 183
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIV 774
+LGCI+AE+ +PLFPG+S QL I
Sbjct: 184 ALGCIMAELYTLRPLFPGSSEIDQLYKIC 212
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent
protein Kinase 9-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK9-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK9 and CDK12 from higher eukaryotes, yeast
BUR1, C-type plant CDKs (CdkC), and similar proteins.
CDK9, BUR1, and CdkC are functionally equivalent. They
act as a kinase for the C-terminal domain of RNA
polymerase II and participate in regulating mutliple
steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the
cyclin BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 224 bits (573), Expect = 7e-66
Identities = 86/212 (40%), Positives = 123/212 (58%), Gaps = 6/212 (2%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTY-REILFLKSFQRHPNIITMLD 627
G+G YG VYKA +K + VA+KKI K T REI L+ RHPNI+ + +
Sbjct: 8 GEGTYGQVYKARNKKTGELVALKKI-RMENEKEGFPITAIREIKLLQKL-RHPNIVRLKE 65
Query: 628 IYKAVNNKDLYVVFEYMENDLNKVIRDKILK--DVHIRYIMFQLCNGLSYIHACKVMHRD 685
I + +Y+VFEYM++DL ++ +K + I+ M QL GL Y+H+ ++HRD
Sbjct: 66 IVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRD 125
Query: 686 LKPSNILIDKSCSIKIGDLGLARSL-SDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
+K SNILI+ +K+ D GLAR + T + T WYR PE+L+ RY VD+
Sbjct: 126 IKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDM 185
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIVNL 776
WS+GCILAE+ KP+F G++ QL+ I L
Sbjct: 186 WSVGCILAELFLGKPIFQGSTELEQLEKIFEL 217
>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Mitogen-Activated Protein Kinase MPK1.
Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MPK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of the MAPKs MPK1 from Saccharomyces
cerevisiae, Pmk1 from Schizosaccharomyces pombe, and
similar proteins. MAPKs are important mediators of
cellular responses to extracellular signals. MPK1 (also
called Slt2) and Pmk1 (also called Spm1) are
stress-activated MAPKs that regulate the cell wall
integrity (CWI) pathway, and are therefore important in
the maintainance of cell shape, cell wall construction,
morphogenesis, and ion homeostasis. MPK1 is activated in
response to cell wall stress including heat stimulation,
osmotic shock, UV irradiation, and any agents that
interfere with cell wall biogenesis such as chitin
antagonists, caffeine, or zymolase. MPK1 is regulated by
the MAP2Ks Mkk1/2, which are regulated by the MAP3K
Bck1. Pmk1 is also activated by multiple stresses
including elevated temperatures, hyper- or hypotonic
stress, glucose deprivation, exposure to cell-wall
damaging compounds, and oxidative stress. It is
regulated by the MAP2K Pek1, which is regulated by the
MAP3K Mkh1.
Length = 332
Score = 224 bits (573), Expect = 2e-65
Identities = 100/222 (45%), Positives = 142/222 (63%), Gaps = 10/222 (4%)
Query: 565 LLKE-GKGAYGIVYKAYDK--NNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPN 621
L+KE G+GAYGIV A + + ++ VAIKKI F K A+R RE+ L+ F+ H N
Sbjct: 4 LIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKN 63
Query: 622 IITM--LDIYKAVNNKDLYVVFEYMENDLNKVIR-DKILKDVHIRYIMFQLCNGLSYIHA 678
I + +DI N +LY+ E ME DL+++IR + L D H + ++Q+ GL YIH+
Sbjct: 64 ITCLYDMDIVFPGNFNELYLYEELMEADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHS 123
Query: 679 CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKE----CLTEYIATRWYRAPEILIS 734
V+HRDLKP N+L++ C +KI D GLAR S++ +TEY+ATRWYRAPEI++S
Sbjct: 124 ANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLS 183
Query: 735 NRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNL 776
+ YT +D+WS+GCILAE+L KP+F G QL I+ +
Sbjct: 184 FQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQV 225
>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TDY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TDY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TDY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. Oryza sativa contains
at least 17 MAPKs. There are two subtypes of plant MAPKs
based on the conserved phosphorylation motif present in
the activation loop, TEY and TDY. Arabidopsis thaliana
contains more TEY-type MAPKs than TDY-type, whereas the
reverse is true for Oryza sativa. This subfamily
represents the TDY subtype and is composed of Group D
plant MAPKs including Arabidopsis thaliana MPK18
(AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1
(OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1),
Zea mays MPK6, and the Medicago sativa TDY1 gene
product. OsBWMK1 enhances resistance to pathogenic
infections. It mediates stress-activated defense
responses by activating a transcription factor that
affects the expression of stress-related genes. AtMPK18
is involved in microtubule-related functions.
Length = 338
Score = 218 bits (556), Expect = 4e-63
Identities = 104/224 (46%), Positives = 142/224 (63%), Gaps = 9/224 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
GKG+YG+V A D + + VAIKKI + F + +DA R REI L+ RHP+I+ + I
Sbjct: 9 GKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLL-RHPDIVEIKHI 67
Query: 629 YKAVNN---KDLYVVFEYMENDLNKVIR-DKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
+ KD+YVVFE ME+DL++VI+ + L H ++ ++QL L YIH V HR
Sbjct: 68 MLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANVFHR 127
Query: 685 DLKPSNILIDKSCSIKIGDLGLAR-SLSDSKECL--TEYIATRWYRAPEILIS-NRRYTH 740
DLKP NIL + C +KI D GLAR + +D+ + T+Y+ATRWYRAPE+ S +YT
Sbjct: 128 DLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTP 187
Query: 741 HVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHA 784
+DIWS+GCI AE+L KPLFPG + HQL LI +L+ P
Sbjct: 188 AIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPET 231
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine
Kinase, Cell Cycle-Related Kinase. Serine/Threonine
Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CCRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CCRK was previously called p42. It is a
Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK)
which is essential for the activation of CDK2. It is
indispensable for cell growth and has been implicated in
the progression of glioblastoma multiforme. In the
heart, a splice variant of CCRK with a different
C-terminal half is expressed, this variant promotes
cardiac cell growth and survival and is significantly
down-regulated during the development of heart failure.
Length = 286
Score = 215 bits (551), Expect = 5e-63
Identities = 97/272 (35%), Positives = 150/272 (55%), Gaps = 23/272 (8%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTD--AQRTYREILFLKSFQRHPNIITML 626
G+GA+GIV+KA D+ + VA+KK+ A R + REI L++ Q HP ++ +L
Sbjct: 9 GEGAHGIVFKAKDRETGETVALKKV--ALRRLEGGIPNQALREIKALQACQ-HPYVVKLL 65
Query: 627 DIYKAVNNKDLYVVFEYMENDLNKVIRD--KILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
D++ +V EYM +DL++V+RD + L + ++ M L G++Y+HA +MHR
Sbjct: 66 DVFPH--GSGFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHR 123
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECL-TEYIATRWYRAPEILISNRRYTHHVD 743
DLKP+N+LI +KI D GLAR S+ + L + +ATRWYRAPE+L R+Y VD
Sbjct: 124 DLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVD 183
Query: 744 IWSLGCILAEMLQSKPLFPGASTSHQLQLIVN-LVRPNP---------PHADKFYAGFKS 793
+W++GCI AE+L PLFPG + QL ++ L PN P +K F
Sbjct: 184 LWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKIT--FP- 240
Query: 794 KHEREKFNQVVVKCQKELQELQSQVVEENTSK 825
+ + ++ E +L ++ + SK
Sbjct: 241 ESKPIPLEEIFPDASPEALDLLKGLLVYDPSK 272
>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine
Kinases, Fungal Mitogen-Activated Protein Kinases Sty1
and Hog1. Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Sty1/Hog1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of the MAPKs Sty1
from Schizosaccharomyces pombe, Hog1 from Saccharomyces
cerevisiae, and similar proteins. MAPKs are important
mediators of cellular responses to extracellular
signals. Sty1 and Hog1 are stress-activated MAPKs that
partipate in transcriptional regulation in response to
stress. Sty1 is activated in response to oxidative
stress, osmotic stress, and UV radiation. Sty1 is
regulated by the MAP2K Wis1, which is activated by the
MAP3Ks Wis4 and Win1, which receive signals of the
stress condition from membrane-spanning histidine
kinases Mak1-3. Activated Sty1 stabilizes the Atf1
transcription factor and induces transcription of
Atf1-dependent genes of the core environmetal stress
response (CESR). Hog1 is the key element in the high
osmolarity glycerol (HOG) pathway and is activated upon
hyperosmotic stress. Activated Hog1 accumulates in the
nucleus and regulates stress-induced transcription. The
HOG pathway is mediated by two transmembrane
osmosensors, Sln1 and Sho1.
Length = 328
Score = 215 bits (548), Expect = 4e-62
Identities = 99/214 (46%), Positives = 145/214 (67%), Gaps = 6/214 (2%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G GA+G+V A D+ Q VAIKKI + F A+RTYRE+ LK RH NII++ DI
Sbjct: 19 GMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHL-RHENIISLSDI 77
Query: 629 YKAVNNKDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRDLKP 688
+ + +D+Y V E + DL++++ + L+ I+Y ++Q+ GL Y+H+ V+HRDLKP
Sbjct: 78 FIS-PLEDIYFVTELLGTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKP 136
Query: 689 SNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIWSLG 748
SNILI+++C +KI D GLAR + D + +T Y++TR+YRAPEI+++ ++Y VDIWS G
Sbjct: 137 SNILINENCDLKICDFGLAR-IQDPQ--MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAG 193
Query: 749 CILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP 782
CI AEML+ KPLFPG +Q +I +L+ PP
Sbjct: 194 CIFAEMLEGKPLFPGKDHVNQFSIITDLL-GTPP 226
>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein
Kinase Like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like
(CDKL) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDKL subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDKL1-5 and similar proteins. Some CDKLs,
like CDKL1 and CDKL3, may be implicated in
transformation and others, like CDKL3 and CDKL5, are
associated with mental retardation when impaired. CDKL2
plays a role in learning and memory.
Length = 288
Score = 202 bits (516), Expect = 3e-58
Identities = 88/233 (37%), Positives = 137/233 (58%), Gaps = 12/233 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+GAYG+V K +K + VAIKK E+ ++ + RE+ L+ RH NI+ + +
Sbjct: 10 GEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQL-RHENIVNLKEA 68
Query: 629 YKAVNNKDLYVVFEYMENDLNKVI--RDKILKDVHIRYIMFQLCNGLSYIHACKVMHRDL 686
++ LY+VFEY+E L +++ L +R ++QL ++Y H+ ++HRD+
Sbjct: 69 FR--RKGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDI 126
Query: 687 KPSNILIDKSCSIKIGDLGLARSLSDSKEC-LTEYIATRWYRAPEILISNRRYTHHVDIW 745
KP NIL+ +S +K+ D G AR+L LT+Y+ATRWYRAPE+L+ + Y VD+W
Sbjct: 127 KPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVW 186
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP------HADKFYAGFK 792
++GCI+AE+L +PLFPG S QL LI + P PP ++ +AG
Sbjct: 187 AIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVA 239
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 198 bits (507), Expect = 5e-58
Identities = 73/217 (33%), Positives = 112/217 (51%), Gaps = 20/217 (9%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+G +G VY A DK + VAIK I + + + REI LK HPNI+ + +
Sbjct: 2 GEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS-LLEELLREIEILKKLN-HPNIVKLYGV 59
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVIRDK--ILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
++ + LY+V EY E L ++++ L + I I+ Q+ GL Y+H+ ++HRD
Sbjct: 60 FE--DENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRD 117
Query: 686 LKPSNILIDKSC-SIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
LKP NIL+D +K+ D GL++ L+ K L + T Y APE+L+ Y+ DI
Sbjct: 118 LKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDI 177
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNP 781
WSLG IL E+ LI +++ +P
Sbjct: 178 WSLGVILYEL------------PELKDLIRKMLQKDP 202
>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent
protein Kinase 1-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 1 (CDK1)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes, plants, and yeasts, as well as CDK2 and
CDK3. CDK1 is also called Cell division control protein
2 (Cdc2) or p34 protein kinase, and is regulated by
cyclins A, B, and E. The CDK1/cyclin A complex controls
G2 phase entry and progression while the CDK1/cyclin B
complex is critical for G2 to M phase transition. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication.
Studies in knockout mice revealed that CDK1 can
compensate for the loss of the cdk2 gene as it can also
bind cyclin E and drive G1 to S phase transition. CDK3
is regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 283
Score = 198 bits (506), Expect = 5e-57
Identities = 93/212 (43%), Positives = 131/212 (61%), Gaps = 16/212 (7%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQ----RTYREILFLKSFQRHPNI 622
K G+G YG+VYKA DK + VA+KKI R +T+ + REI LK HPNI
Sbjct: 6 KIGEGTYGVVYKARDKLTGEIVALKKI----RLETEDEGVPSTAIREISLLKEL-NHPNI 60
Query: 623 ITMLDIYKAVNNKDLYVVFEYMENDLNKVIRDKILKDVH----IRYIMFQLCNGLSYIHA 678
+ +LD+ + N LY+VFE+++ DL K + D I+ ++QL G++Y H+
Sbjct: 61 VRLLDVVHSENK--LYLVFEFLDLDLKKYM-DSSPLTGLDPPLIKSYLYQLLQGIAYCHS 117
Query: 679 CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRY 738
+V+HRDLKP N+LID+ ++K+ D GLAR+ T + T WYRAPEIL+ +R+Y
Sbjct: 118 HRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQY 177
Query: 739 THHVDIWSLGCILAEMLQSKPLFPGASTSHQL 770
+ VDIWS+GCI AEM+ +PLFPG S QL
Sbjct: 178 STPVDIWSIGCIFAEMVNRRPLFPGDSEIDQL 209
>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent
protein Kinase 4 and 6-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) and CDK6-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK4/6-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK4 and CDK6
partner with D-type cyclins to regulate the early G1
phase of the cell cycle. They are the first kinase
activated by mitogenic signals to release cells from the
G0 arrested state. CDK4 and CDK6 are both expressed
ubiquitously, associate with all three D cyclins (D1, D2
and D3), and phosphorylate the retinoblastoma (pRb)
protein. They are also regulated by the INK4 family of
inhibitors which associate with either the CDK alone or
the CDK/cyclin complex. CDK4 and CDK6 show differences
in subcellular localization, sensitivity to some
inhibitors, timing in activation, tumor selectivity, and
possibly substrate profiles. Although CDK4 and CDK6 seem
to show some redundancy, they also have discrete,
nonoverlapping functions. CDK6 plays an important role
in cell differentiation.
Length = 287
Score = 196 bits (500), Expect = 3e-56
Identities = 85/224 (37%), Positives = 125/224 (55%), Gaps = 18/224 (8%)
Query: 561 QQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDA--QRTYREILFLKSFQR 618
+++ + G+GAYG VYKA D N ++VA+KK+ + T REI LK +
Sbjct: 2 EELAEI--GEGAYGTVYKARDLNTGRFVALKKV--RVPLSEEGIPLSTLREIALLKQLES 57
Query: 619 --HPNIITMLDIYKAVNNK---DLYVVFEYMENDLNKVIR---DKILKDVHIRYIMFQLC 670
HPNI+ +LD+ L +VFE+++ DL + L I+ +M QL
Sbjct: 58 FEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLL 117
Query: 671 NGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLS-DSKECLTEYIATRWYRAP 729
G+ ++H+ +++HRDLKP NIL+ +KI D GLAR S + LT + T WYRAP
Sbjct: 118 RGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMA--LTSVVVTLWYRAP 175
Query: 730 EILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLI 773
E+L+ Y VD+WS+GCI AE+ + +PLF G S + QL I
Sbjct: 176 EVLL-QSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKI 218
>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the
Serine/Threonine Kinase, p38beta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38beta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38beta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38beta, also called MAPK11, is widely expressed
in tissues and shows more similarity with p38alpha than
with the other isoforms. Both are sensitive to
pyridinylimidazoles and share some common substrates
such as MAPK activated protein kinase 2 (MK2) and the
transcription factors ATF2, c-Fos and, ELK-1. p38beta is
involved in regulating the activation of the
cyclooxygenase-2 promoter and the expression of
TGFbeta-induced alpha-smooth muscle cell actin.
Length = 343
Score = 196 bits (500), Expect = 1e-55
Identities = 103/260 (39%), Positives = 161/260 (61%), Gaps = 13/260 (5%)
Query: 560 QQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRH 619
++ NL G GAYG V AYD +Q VA+KK+ F++ A+RTYRE+ LK +H
Sbjct: 15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHM-KH 73
Query: 620 PNIITMLDIYKAV----NNKDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSY 675
N+I +LD++ N ++Y+V M DLN +++ + L D H++++++QL GL Y
Sbjct: 74 ENVIGLLDVFTPATSIENFNEVYLVTNLMGADLNNIVKCQKLSDEHVQFLIYQLLRGLKY 133
Query: 676 IHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISN 735
IH+ ++HRDLKPSN+ +++ C ++I D GLAR D +T Y+ATRWYRAPEI+++
Sbjct: 134 IHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADDE---MTGYVATRWYRAPEIMLNW 190
Query: 736 RRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV-RPNPPHADKFYAGFKSK 794
Y VDIWS+GCI+AE+L+ K LFPG QL+ I+ +V P+P + S+
Sbjct: 191 MHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSP----EVLKKISSE 246
Query: 795 HEREKFNQVVVKCQKELQEL 814
H R+ + Q++L+++
Sbjct: 247 HARKYIQSLPHMPQQDLKKI 266
>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase,
Nemo-Like Kinase. Serine/Threonine Kinases (STKs),
Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The NLK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mitogen-activated protein
kinases (MAPKs) are important mediators of cellular
responses to extracellular signals. NLK is an atypical
MAPK that is not regulated by a MAPK kinase. It
functions downstream of the MAPK kinase kinase Tak1,
which also plays a role in activating the JNK and p38
MAPKs. The Tak1/NLK pathways are regulated by Wnts, a
family of secreted proteins that is critical in the
control of asymmetric division and cell polarity. NLK
can phosphorylate transcription factors from the TCF/LEF
family, inhibiting their ability to activate the
transcription of target genes. In prostate cancer cells,
NLK is involved in regulating androgen receptor-mediated
transcription and its expression is altered during
cancer progression.
Length = 372
Score = 197 bits (503), Expect = 1e-55
Identities = 88/228 (38%), Positives = 141/228 (61%), Gaps = 9/228 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G GA+G+V+ D + + VA+KK+ F+N +R +RE+ L F +H N+++ LDI
Sbjct: 9 GYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFF-KHDNVLSALDI 67
Query: 629 YKAVNN---KDLYVVFEYMENDLNKVI-RDKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
+ + +++YVV E M++DL+K+I + L H++ ++Q+ GL Y+H+ ++HR
Sbjct: 68 LQPPHIDPFEEIYVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHR 127
Query: 685 DLKPSNILIDKSCSIKIGDLGLAR--SLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
D+KP N+L++ +C +KI D GLAR +SK +T+ + T++YRAPEIL+ +R YT V
Sbjct: 128 DIKPGNLLVNSNCVLKICDFGLARVEEPDESKH-MTQEVVTQYYRAPEILMGSRHYTSAV 186
Query: 743 DIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAG 790
DIWS+GCI AE+L + LF S QL LI +L+ P A
Sbjct: 187 DIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLG-TPSLEAMRSAC 233
>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the
Serine/Threonine Kinase, p38alpha Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38alpha subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38alpha subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38alpha, also called MAPK14, is expressed in
most tissues and is the major isoform involved in the
immune and inflammatory response. It is the central p38
MAPK involved in myogenesis. It plays a role in
regulating cell cycle check-point transition and
promoting cell differentiation. p38alpha also regulates
cell proliferation and death through crosstalk with the
JNK pathway. Its substrates include MAPK activated
protein kinase 2 (MK2), MK5, and the transcription
factors ATF2 and Mitf.
Length = 345
Score = 195 bits (497), Expect = 3e-55
Identities = 97/242 (40%), Positives = 150/242 (61%), Gaps = 10/242 (4%)
Query: 545 YKKSIDQLMKDREDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQ 604
Y++ +++ + + + Q NL G GAYG V A+D VA+KK+ F++ A+
Sbjct: 4 YRQELNKTIWEVPERYQ--NLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAK 61
Query: 605 RTYREILFLKSFQRHPNIITMLDIYKAVNN----KDLYVVFEYMENDLNKVIRDKILKDV 660
RTYRE+ LK +H N+I +LD++ + D+Y+V M DLN +++ + L D
Sbjct: 62 RTYRELRLLKHM-KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDD 120
Query: 661 HIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY 720
H++++++Q+ GL YIH+ ++HRDLKPSN+ +++ C +KI D GLAR D +T Y
Sbjct: 121 HVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE---MTGY 177
Query: 721 IATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPN 780
+ATRWYRAPEI+++ Y VDIWS+GCI+AE+L + LFPG QL+LI+ LV
Sbjct: 178 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 237
Query: 781 PP 782
Sbjct: 238 GA 239
>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine
Kinase, Cell Division Cycle 2-like 1. Serine/Threonine
Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDC2L1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDC2L1, also
called PITSLRE, exists in different isoforms which are
named using the alias CDK11(p). The CDC2L1 gene produces
two protein products, CDK11(p110) and CDK11(p58). CDC2L1
is also represented by the caspase-processed CDK11(p46).
CDK11(p110), the major isoform, associates with cyclin L
and is expressed throughout the cell cycle. It is
involved in RNA processing and the regulation of
transcription. CDK11(p58) associates with cyclin D3 and
is expressed during the G2/M phase of the cell cycle. It
plays roles in spindle morphogenesis, centrosome
maturation, sister chromatid cohesion, and the
completion of mitosis. CDK11(p46) is formed from the
larger isoforms by caspases during TNFalpha- and
Fas-induced apoptosis. It functions as a downstream
effector kinase in apoptotic signaling pathways and
interacts with eukaryotic initiation factor 3f (eIF3f),
p21-activated kinase (PAK1), and Ran-binding protein
(RanBPM).
Length = 293
Score = 190 bits (485), Expect = 5e-54
Identities = 88/242 (36%), Positives = 139/242 (57%), Gaps = 22/242 (9%)
Query: 561 QQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQR-----TY-REILFLK 614
+++N ++EG YG+VY+A DK + VA+KK+ K + ++ T REI L
Sbjct: 8 EKLNRIEEG--TYGVVYRARDKKTGEIVALKKL------KMEKEKEGFPITSLREINILL 59
Query: 615 SFQRHPNIITMLDIYKAVNNKDLYVVFEYMENDLNKVIRDK--ILKDVHIRYIMFQLCNG 672
Q HPNI+T+ ++ N +Y+V EY+E+DL ++ ++ +M QL +G
Sbjct: 60 KLQ-HPNIVTVKEVVVGSNLDKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSG 118
Query: 673 LSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEIL 732
++++H ++HRDLK SN+L++ +KI D GLAR + T+ + T WYRAPE+L
Sbjct: 119 VAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELL 178
Query: 733 ISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV-RPNPPHADKFYAGF 791
+ + Y+ +D+WS+GCI AE+L KPLFPG S QL I L+ P +K + GF
Sbjct: 179 LGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPT----EKIWPGF 234
Query: 792 KS 793
Sbjct: 235 SE 236
>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Bypass
UAS Requirement 1 and similar proteins.
Serine/Threonine Kinases (STKs), Bypass UAS Requirement
1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
BUR1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. BUR1, also called
SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK)
that is functionally equivalent to mammalian CDK9. It
associates with the cyclin BUR2. BUR genes were
orginally identified in a genetic screen as factors
involved in general transcription. The BUR1/BUR2 complex
phosphorylates the C-terminal domain of RNA polymerase
II. In addition, this complex regulates histone
modification by phosporylating Rad6 and mediating the
association of the Paf1 complex with chromatin.
Length = 311
Score = 189 bits (481), Expect = 3e-53
Identities = 83/235 (35%), Positives = 117/235 (49%), Gaps = 26/235 (11%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
K G+G +G VYKA + VA+KKI REI LK +HPN++ ++
Sbjct: 15 KLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKL-KHPNVVPLI 73
Query: 627 DIY------KAVNNKDLYVVFEYMENDL-----NKVIRDKILKDVHIRYIMFQLCNGLSY 675
D+ +Y+V YM++DL N ++ L + I+ M QL G++Y
Sbjct: 74 DMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVK---LTESQIKCYMLQLLEGINY 130
Query: 676 IHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSK--------ECLTEY---IATR 724
+H ++HRD+K +NILID +KI D GLAR +Y + TR
Sbjct: 131 LHENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTR 190
Query: 725 WYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRP 779
WYR PE+L+ RRYT VDIW +GC+ AEM +P+ G S QL LI L
Sbjct: 191 WYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGT 245
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in
approximately 50% of renal cell carcinomas (RCC) and is
a potential target for immunotherapy. MOK is stabilized
by its association with the HSP90 molecular chaperone.
It is induced by the transcription factor Cdx2 and may
be involved in regulating intestinal epithelial
development and differentiation.
Length = 282
Score = 186 bits (475), Expect = 7e-53
Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 6/229 (2%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
K G+G + V KA + +Y AIK + + F++ REI L+ HPNI+ ++
Sbjct: 6 KIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNN-LREIQALRRLSPHPNILRLI 64
Query: 627 DIYKAVNNKDLYVVFEYMENDLNKVIRDKI--LKDVHIRYIMFQLCNGLSYIHACKVMHR 684
++ L +VFE M+ +L ++I+ + L + ++ M+QL L ++H + HR
Sbjct: 65 EVLFDRKTGRLALVFELMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHR 124
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
D+KP NILI +K+ D G R + SK TEYI+TRWYRAPE L+++ Y +DI
Sbjct: 125 DIKPENILIKDDI-LKLADFGSCRGI-YSKPPYTEYISTRWYRAPECLLTDGYYGPKMDI 182
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV-RPNPPHADKFYAGFK 792
W++GC+ E+L PLFPG + Q+ I +++ P+ KF
Sbjct: 183 WAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRH 231
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 2 (CDK2) and CDK3 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK2/3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK2 is regulated by cyclin E or cyclin A.
Upon activation by cyclin E, it phosphorylates the
retinoblastoma (pRb) protein which activates E2F
mediated transcription and allows cells to move into S
phase. The CDK2/cyclin A complex plays a role in
regulating DNA replication. CDK2, together with CDK4,
also regulates embryonic cell proliferation. Despite
these important roles, mice deleted for the cdk2 gene
are viable and normal except for being sterile. This may
be due to compensation provided by CDK1 (also called
Cdc2), which can also bind cyclin E and drive the G1 to
S phase transition. CDK3 is regulated by cyclin C and it
phosphorylates pRB specifically during the G0/G1
transition. This phosphorylation is required for cells
to exit G0 efficiently and enter the G1 phase.
Length = 284
Score = 186 bits (474), Expect = 8e-53
Identities = 104/276 (37%), Positives = 154/276 (55%), Gaps = 28/276 (10%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQ----RTYREILFLKSFQRHPNI 622
K G+G YG+VYKA +K + VA+KKI R T+ + REI LK HPNI
Sbjct: 7 KIGEGTYGVVYKARNKLTGEVVALKKI----RLDTETEGVPSTAIREISLLKELN-HPNI 61
Query: 623 ITMLDIYKAVNNKDLYVVFEYMENDLNKVIRDKILKDVH---IRYIMFQLCNGLSYIHAC 679
+ +LD+ LY+VFE++ DL K + L + I+ +FQL GL++ H+
Sbjct: 62 VKLLDVIH--TENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH 119
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYT 739
+V+HRDLKP N+LI+ +IK+ D GLAR+ T + T WYRAPEIL+ + Y+
Sbjct: 120 RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYS 179
Query: 740 HHVDIWSLGCILAEMLQSKPLFPGASTSHQL-QLIVNLVRPNPPHADKFYAG------FK 792
VDIWSLGCI AEM+ + LFPG S QL ++ L P+ + + G +K
Sbjct: 180 TAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD----EVVWPGVTSLPDYK 235
Query: 793 S---KHEREKFNQVVVKCQKELQELQSQVVEENTSK 825
K R+ F++VV ++ ++L SQ++ + +K
Sbjct: 236 PSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNK 271
>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent
protein Kinase 8-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK8-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK8, CDC2L6, and similar proteins. CDK8
functions as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDC2L6 also associates with
Mediator in complexes lacking CDK8. In VP16-dependent
transcriptional activation, CDK8 and CDC2L6 exerts
opposing effects by positive and negative regulation,
respectively, in similar conditions.
Length = 316
Score = 187 bits (476), Expect = 1e-52
Identities = 80/212 (37%), Positives = 129/212 (60%), Gaps = 19/212 (8%)
Query: 569 GKGAYGIVYKAYDKNNK--QYVAIKKIFEAFRNKTD--AQRTYREILFLKSFQRHPNIIT 624
G+G YG VYKA KN K + AIKK F+ + + +Q REI L+ + H N+++
Sbjct: 9 GRGTYGRVYKAKRKNGKDGKEYAIKK-FKGDKEQYTGISQSACREIALLRELK-HENVVS 66
Query: 625 MLDIYKAVNNKDLYVVFEYMENDLNKVI---RDKILKDVH---IRYIMFQLCNGLSYIHA 678
+++++ +K +Y++F+Y E+DL ++I R + ++ +++Q+ NG+ Y+H+
Sbjct: 67 LVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHS 126
Query: 679 CKVMHRDLKPSNILI----DKSCSIKIGDLGLARSL-SDSKECLTE--YIATRWYRAPEI 731
V+HRDLKP+NIL+ + +KIGDLGLAR + K + T WYRAPE+
Sbjct: 127 NWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPEL 186
Query: 732 LISNRRYTHHVDIWSLGCILAEMLQSKPLFPG 763
L+ R YT +DIW++GCI AE+L +P+F G
Sbjct: 187 LLGARHYTKAIDIWAIGCIFAELLTLEPIFKG 218
>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 2 (CDKL2) and CDKL3 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL2 and CDKL3
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL2, also called
p56 KKIAMRE, is expressed in testis, kidney, lung, and
brain. It functions mainly in mature neurons and plays
an important role in learning and memory. Inactivation
of CDKL3, also called NKIAMRE (NKIATRE in rat), by
translocation is associated with mild mental
retardation. It has been reported that CDKL3 is lost in
leukemic cells having a chromosome arm 5q deletion, and
may contribute to the transformed phenotype.
Length = 286
Score = 186 bits (473), Expect = 1e-52
Identities = 87/215 (40%), Positives = 134/215 (62%), Gaps = 9/215 (4%)
Query: 564 NLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNII 623
NL G+G+YG+V K K Q VAIKK E+ +K + REI LK RH N++
Sbjct: 5 NLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQL-RHENLV 63
Query: 624 TMLDIYKAVNNKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHAC 679
++++++ K LY+VFE+++ +DL K L + +R +FQ+ G+ + H+
Sbjct: 64 NLIEVFR--RKKRLYLVFEFVDHTVLDDLEKYPNG--LDESRVRKYLFQILRGIEFCHSH 119
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYT 739
++HRD+KP NIL+ +S +K+ D G AR+L+ E T+Y+ATRWYRAPE+L+ + +Y
Sbjct: 120 NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYG 179
Query: 740 HHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIV 774
VDIW++GC++ EML +PLFPG S QL I+
Sbjct: 180 RAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHII 214
>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the
Serine/Threonine Kinase, p38gamma Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38gamma subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38gamma subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38gamma, also called MAPK12, is predominantly
expressed in skeletal muscle. Unlike p38alpha and
p38beta, p38gamma is insensitive to pyridinylimidazoles.
It displays an antagonizing function compared to
p38alpha. p38gamma inhibits, while p38alpha stimulates,
c-Jun phosphorylation and AP-1 mediated transcription.
p38gamma also plays a role in the signaling between Ras
and the estrogen receptor and has been implicated to
increase cell invasion and breast cancer progression. In
Xenopus, p38gamma is critical in the meiotic maturation
of oocytes.
Length = 343
Score = 187 bits (477), Expect = 2e-52
Identities = 92/217 (42%), Positives = 140/217 (64%), Gaps = 8/217 (3%)
Query: 564 NLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNII 623
+L + G GAYG V A D+ VAIKK++ F+++ A+R YRE+ LK +H N+I
Sbjct: 19 DLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM-KHENVI 77
Query: 624 TMLDIYKAVNN----KDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHAC 679
+LD++ + D Y+V +M DL K+++ + L + I+++++Q+ GL YIHA
Sbjct: 78 GLLDVFTPDLSLDRFHDFYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAA 137
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYT 739
++HRDLKP N+ +++ C +KI D GLAR +DS+ +T Y+ TRWYRAPE++++ YT
Sbjct: 138 GIIHRDLKPGNLAVNEDCELKILDFGLARQ-TDSE--MTGYVVTRWYRAPEVILNWMHYT 194
Query: 740 HHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNL 776
VDIWS+GCI+AEML KPLF G QL I+ +
Sbjct: 195 QTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKV 231
>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
Length = 335
Score = 183 bits (467), Expect = 3e-51
Identities = 86/235 (36%), Positives = 120/235 (51%), Gaps = 30/235 (12%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI-FEAFRNKTDAQRTY-----------REILFLKSF 616
G+G YG V KAYD + VAIKK+ N R RE+ +
Sbjct: 18 GEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEI 77
Query: 617 QRHPNIITMLDIYKAVNNKDLYVVFEYMENDLNKVIRDKI-LKDVHIRYIMFQLCNGLSY 675
+ H NI+ ++D+Y V + +V + M +DL KV+ KI L + ++ I+ Q+ NGL+
Sbjct: 78 K-HENIMGLVDVY--VEGDFINLVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNV 134
Query: 676 IHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSL--------------SDSKECLTEYI 721
+H MHRDL P+NI I+ KI D GLAR +E +T +
Sbjct: 135 LHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKV 194
Query: 722 ATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNL 776
T WYRAPE+L+ +Y VD+WS+GCI AE+L KPLFPG + QL I L
Sbjct: 195 VTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFEL 249
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 181 bits (460), Expect = 6e-51
Identities = 82/213 (38%), Positives = 132/213 (61%), Gaps = 9/213 (4%)
Query: 565 LLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
L K G+G+YG+V+K ++ Q VAIKK E+ + + REI LK +HPN++
Sbjct: 6 LSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQL-KHPNLVN 64
Query: 625 MLDIYKAVNNKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACK 680
++++++ + L++VFEY + N+L K + + + I+ I++Q +++ H
Sbjct: 65 LIEVFR--RKRKLHLVFEYCDHTVLNELEK--NPRGVPEHLIKKIIWQTLQAVNFCHKHN 120
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTH 740
+HRD+KP NILI K IK+ D G AR L+ + T+Y+ATRWYRAPE+L+ + +Y
Sbjct: 121 CIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGP 180
Query: 741 HVDIWSLGCILAEMLQSKPLFPGASTSHQLQLI 773
VD+W++GC+ AE+L +PL+PG S QL LI
Sbjct: 181 PVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLI 213
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 180 bits (459), Expect = 1e-50
Identities = 91/223 (40%), Positives = 122/223 (54%), Gaps = 10/223 (4%)
Query: 565 LLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
L K G+G YG VYKA DKN + VA+KK + REI L+ I+
Sbjct: 6 LEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVR 65
Query: 625 MLDIYKAVNNK---DLYVVFEYMENDLNKVIRDKILKDVH------IRYIMFQLCNGLSY 675
+LD+ LY+VFEY+++DL K + I+ M+QL G+++
Sbjct: 66 LLDVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAH 125
Query: 676 IHACKVMHRDLKPSNILIDKSCS-IKIGDLGLARSLSDSKECLTEYIATRWYRAPEILIS 734
H VMHRDLKP N+L+DK +KI DLGL R+ S + T I T WYRAPE+L+
Sbjct: 126 CHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLG 185
Query: 735 NRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV 777
+ Y+ VDIWS+GCI AEM + +PLFPG S QL I L+
Sbjct: 186 STHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLL 228
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 178 bits (455), Expect = 2e-50
Identities = 65/220 (29%), Positives = 115/220 (52%), Gaps = 13/220 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
GKG++G VY K++ + +K+I + ++ + + E+ LK HPNII +
Sbjct: 9 GKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKK-LNHPNIIKYYES 67
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIR-----YIMFQLCNGLSYIHACKVM 682
+ L +V EY + DL++ I+ + + QLC L Y+H+ K++
Sbjct: 68 F--EEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKIL 125
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
HRD+KP NI + + +K+GD G+++ LS + + + T +Y +PE+ N+ Y +
Sbjct: 126 HRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPEL-CQNKPYNYKS 184
Query: 743 DIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP 782
DIWSLGC+L E+ K F G + L+L + +++ P
Sbjct: 185 DIWSLGCVLYELCTLKHPFEGEN---LLELALKILKGQYP 221
>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 10.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein Kinase 10 (CDK10) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK10 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK10, also called PISSLRE, is essential for
cell growth and proliferation, and acts through the G2/M
phase of the cell cycle. CDK10 has also been identified
as an important factor in endocrine therapy resistance
in breast cancer. CDK10 silencing increases the
transcription of c-RAF and the activation of the p42/p44
MAPK pathway, which leads to antiestrogen resistance.
Patients who express low levels of CDK10 relapse early
on tamoxifen.
Length = 309
Score = 180 bits (459), Expect = 2e-50
Identities = 91/239 (38%), Positives = 135/239 (56%), Gaps = 27/239 (11%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQR------TYREILFLKSFQRHPNI 622
G+G YGIVY+A D + + VA+KK+ + D +R + REI L + RHPNI
Sbjct: 16 GEGTYGIVYRARDTTSGEIVALKKV------RMDNERDGIPISSLREITLLLNL-RHPNI 68
Query: 623 ITMLDIYKAVNNKDLYVVFEYMENDLNKVIRD--KILKDVHIRYIMFQLCNGLSYIHACK 680
+ + ++ + +++V EY E DL ++ + + ++ +M QL GL Y+H
Sbjct: 69 VELKEVVVGKHLDSIFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENF 128
Query: 681 VMHRDLKPSNILI-DKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYT 739
++HRDLK SN+L+ DK C +KI D GLAR+ + +T + T WYRAPE+L+ YT
Sbjct: 129 IIHRDLKVSNLLLTDKGC-LKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYT 187
Query: 740 HHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV-RPNP---------PHADKFY 788
+D+W++GCILAE+L KPL PG S QL LI+ L+ PN P KF
Sbjct: 188 TAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFT 246
>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the
Serine/Threonine Kinase, p38delta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38delta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38delta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38delta, also called MAPK13, is found in
skeletal muscle, heart, lung, testis, pancreas, and
small intestine. It regulates microtubule function by
phosphorylating Tau. It activates the c-jun promoter and
plays a role in G2 cell cycle arrest. It also controls
the degration of c-Myb, which is associated with myeloid
leukemia and poor prognosis in colorectal cancer.
p38delta is the main isoform involved in regulating the
differentiation and apoptosis of keratinocytes.
Length = 342
Score = 181 bits (460), Expect = 3e-50
Identities = 90/210 (42%), Positives = 134/210 (63%), Gaps = 9/210 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G GAYG V A DK + VAIKK+ F+++ A+R YRE+ LK Q H N+I +LD+
Sbjct: 24 GSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQ-HENVIGLLDV 82
Query: 629 YKAV----NNKDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
+ + +D Y+V YM+ DL K++ L + ++Y+++Q+ GL YIH+ ++HR
Sbjct: 83 FTSAVSGDEFQDFYLVMPYMQTDLQKIMGHP-LSEDKVQYLVYQMLCGLKYIHSAGIIHR 141
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
DLKP N+ +++ C +KI D GLAR +D++ +T Y+ TRWYRAPE++++ Y VDI
Sbjct: 142 DLKPGNLAVNEDCELKILDFGLARH-ADAE--MTGYVVTRWYRAPEVILNWMHYNQTVDI 198
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIV 774
WS+GCI+AEML K LF G QL I+
Sbjct: 199 WSVGCIMAEMLTGKTLFKGKDYLDQLTQIL 228
>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase (JNK) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others. They
are also essential regulators of physiological and
pathological processes and are involved in the
pathogenesis of several diseases such as diabetes,
atherosclerosis, stroke, Parkinson's and Alzheimer's.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3) that are alternatively spliced to produce at
least 10 isoforms. JNKs are specifically activated by
the MAPK kinases MKK4 and MKK7, which are in turn
activated by upstream MAPK kinase kinases as a result of
different stimuli including stresses such as ultraviolet
(UV) irradiation, hyperosmolarity, heat shock, or
cytokines. JNKs activate a large number of different
substrates based on specific stimulus, cell type, and
cellular condition, and may be implicated in seemingly
contradictory functions.
Length = 353
Score = 180 bits (458), Expect = 8e-50
Identities = 88/209 (42%), Positives = 133/209 (63%), Gaps = 8/209 (3%)
Query: 559 LQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQR 618
L++ NL G GA GIV AYD Q VAIKK+ F+N T A+R YRE++ +K
Sbjct: 15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLV-N 73
Query: 619 HPNIITMLDIYKAVNN----KDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLS 674
H NII +L+++ + +D+Y+V E M+ +L +VI+ L + Y+++Q+ G+
Sbjct: 74 HKNIIGLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQ-MDLDHERMSYLLYQMLCGIK 132
Query: 675 YIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILIS 734
++H+ ++HRDLKPSNI++ C++KI D GLAR+ S +T Y+ TR+YRAPE+ I
Sbjct: 133 HLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPEV-IL 190
Query: 735 NRRYTHHVDIWSLGCILAEMLQSKPLFPG 763
Y +VDIWS+GCI+ EM++ LFPG
Sbjct: 191 GMGYKENVDIWSVGCIMGEMIRGTVLFPG 219
>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Pho85.
Serine/Threonine Kinases (STKs), Pho85 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Pho85 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Pho85 is a
multifunctional Cyclin-Dependent protein Kinase (CDK) in
yeast. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Pho85 is regulated
by 10 different cyclins (Pcls) and plays a role in G1
progression, cell polarity, phosphate and glycogen
metabolism, gene expression, and in signaling changes in
the environment. It is not essential for yeast viability
and is the functional homolog of mammalian CDK5, which
plays a role in central nervous system development.
Length = 284
Score = 176 bits (449), Expect = 2e-49
Identities = 82/222 (36%), Positives = 125/222 (56%), Gaps = 18/222 (8%)
Query: 565 LLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQR-----TYREILFLKSFQRH 619
L K G+G Y VYK ++ + VA+K+I DA+ REI +K +H
Sbjct: 5 LEKLGEGTYATVYKGRNRTTGEIVALKEI------HLDAEEGTPSTAIREISLMKEL-KH 57
Query: 620 PNIITMLDIYKAVNNKDLYVVFEYMENDLNKVI----RDKILKDVHIRYIMFQLCNGLSY 675
NI+ + D+ NK L +VFEYM+ DL K + L ++ +QL G+++
Sbjct: 58 ENIVRLHDVIH-TENK-LMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAF 115
Query: 676 IHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISN 735
H +V+HRDLKP N+LI+K +K+ D GLAR+ + + T WYRAP++L+ +
Sbjct: 116 CHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGS 175
Query: 736 RRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV 777
R Y+ +DIWS+GCI+AEM+ +PLFPG + QL I ++
Sbjct: 176 RTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIM 217
>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 9.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK9 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK9
together with a cyclin partner (cyclin T1, T2a, T2b, or
K) is the main component of distinct positive
transcription elongation factors (P-TEFb), which
function as Ser2 C-terminal domain kinases of RNA
polymerase II. P-TEFb participates in multiple steps of
gene expression including transcription elongation, mRNA
synthesis, processing, export, and translation. It also
plays a role in mediating cytokine induced transcription
networks such as IL6-induced STAT3 signaling. In
addition, the CDK9/cyclin T2a complex promotes muscle
differentiation and enhances the function of some
myogenic regulatory factors.
Length = 310
Score = 177 bits (451), Expect = 2e-49
Identities = 86/232 (37%), Positives = 127/232 (54%), Gaps = 13/232 (5%)
Query: 557 EDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSF 616
+++ + L K G+G +G V+KA K KQ VA+KK+ + REI L+
Sbjct: 9 DEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLL 68
Query: 617 QRHPNIITMLDI----YKAVNNK--DLYVVFEYMENDLNKVIRDKILK--DVHIRYIMFQ 668
+H N++ +++I N Y+VFE+ E+DL ++ +K +K I+ +M
Sbjct: 69 -KHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKM 127
Query: 669 LCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKE----CLTEYIATR 724
L NGL YIH K++HRD+K +NILI K +K+ D GLAR+ S SK T + T
Sbjct: 128 LLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTL 187
Query: 725 WYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNL 776
WYR PE+L+ R Y +D+W GCI+AEM P+ G + HQL LI L
Sbjct: 188 WYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQL 239
>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional.
Length = 294
Score = 173 bits (441), Expect = 3e-48
Identities = 89/215 (41%), Positives = 130/215 (60%), Gaps = 7/215 (3%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
K G+G YG+VYKA D+ + +A+KKI ++ REI LK Q H NI+ +
Sbjct: 9 KIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQ-HGNIVRLQ 67
Query: 627 DIYKAVNNKDLYVVFEYMENDLNKVIRD--KILKDVH-IRYIMFQLCNGLSYIHACKVMH 683
D+ + K LY+VFEY++ DL K + K+ I+ ++Q+ G++Y H+ +V+H
Sbjct: 68 DVVH--SEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLH 125
Query: 684 RDLKPSNILIDKSC-SIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
RDLKP N+LID+ ++K+ D GLAR+ T + T WYRAPEIL+ +R Y+ V
Sbjct: 126 RDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPV 185
Query: 743 DIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV 777
DIWS+GCI AEM+ KPLFPG S +L I ++
Sbjct: 186 DIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRIL 220
>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine
Kinases, Mitogen-Activated Protein Kinases 4 and 6.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK4/6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. MAPK4 is also called ERK4 or
p63MAPK, while MAPK6 is also called ERK3 or p97MAPK.
MAPK4 and MAPK6 are atypical MAPKs that are not
regulated by MAP2Ks. MAPK6 is expressed ubiquitously
with highest amounts in brain and skeletal muscle. It
may be involved in the control of cell differentiation
by negatively regulating cell cycle progression in
certain conditions. It may also play a role in
glucose-induced insulin secretion. MAPK6 and MAPK4
cooperate to regulate the activity of MAPK-activated
protein kinase 5 (MK5), leading to its relocation to the
cytoplasm and exclusion from the nucleus. The MAPK6/MK5
and MAPK4/MK5 pathways may play critical roles in
embryonic and post-natal development.
Length = 342
Score = 174 bits (444), Expect = 4e-48
Identities = 86/225 (38%), Positives = 125/225 (55%), Gaps = 19/225 (8%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G G+ G+V+ A D + + VA+KKI + + REI ++ H NI+ + ++
Sbjct: 14 GCGSNGLVFSAVDSDCDKRVAVKKIV--LTDPQSVKHALREIKIIRRLD-HDNIVKVYEV 70
Query: 629 YKAVNNKD------------LYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSYI 676
+ +Y+V EYME DL V+ L + H R M+QL GL YI
Sbjct: 71 LGPSGSDLTEDVGSLTELNSVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYI 130
Query: 677 HACKVMHRDLKPSNILID-KSCSIKIGDLGLARSLS---DSKECLTEYIATRWYRAPEIL 732
H+ V+HRDLKP+N+ I+ + +KIGD GLAR + K L+E + T+WYR+P +L
Sbjct: 131 HSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLL 190
Query: 733 ISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV 777
+S YT +D+W+ GCI AEML KPLF GA Q+QLI+ V
Sbjct: 191 LSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESV 235
>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 1 from higher
eukaryotes-like. Serine/Threonine Kinases (STKs),
Cyclin-Dependent protein Kinase 1 (CDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes. CDK1 is also called Cell division control
protein 2 (Cdc2) or p34 protein kinase, and is regulated
by cyclins A, B, and E. The CDK1/cyclin A complex
controls G2 phase entry and progression. CDK1/cyclin A2
has also been implicated as an important regulator of S
phase events. The CDK1/cyclin B complex is critical for
G2 to M phase transition. It induces mitosis by
activating nuclear enzymes that regulate chromatin
condensation, nuclear membrane degradation,
mitosis-specific microtubule and cytoskeletal
reorganization. CDK1 also associates with cyclin E and
plays a role in the entry into S phase. CDK1
transcription is stable throughout the cell cycle but is
modulated in some pathological conditions. It may play a
role in regulating apoptosis under these conditions. In
breast cancer cells, HER2 can mediate apoptosis by
inactivating CDK1. Activation of CDK1 may contribute to
HIV-1 induced apoptosis and neuronal apoptosis in
neurodegenerative diseases.
Length = 285
Score = 172 bits (439), Expect = 5e-48
Identities = 83/208 (39%), Positives = 119/208 (57%), Gaps = 7/208 (3%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
K G+G YG+VYK +K Q VA+KKI + REI LK Q HPNI+ +
Sbjct: 7 KIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQ-HPNIVCLQ 65
Query: 627 DIYKAVNNKDLYVVFEYMENDLNKVI----RDKILKDVHIRYIMFQLCNGLSYIHACKVM 682
D+ + LY++FE++ DL K + + + + ++ ++Q+ G+ + H+ +V+
Sbjct: 66 DVLMQESR--LYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVL 123
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
HRDLKP N+LID IK+ D GLAR+ T + T WYRAPE+L+ + RY+ V
Sbjct: 124 HRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPV 183
Query: 743 DIWSLGCILAEMLQSKPLFPGASTSHQL 770
DIWS+G I AEM KPLF G S QL
Sbjct: 184 DIWSIGTIFAEMATKKPLFHGDSEIDQL 211
>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 5.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 5 (CDK5) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK5 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK5
is unusual in that it is regulated by non-cyclin
proteins, p35 and p39. It is highly expressed in the
nervous system and is critical in normal neural
development and function. It plays a role in neuronal
migration and differentiation, and is also important in
synaptic plasticity and learning. CDK5 also participates
in protecting against cell death and promoting
angiogenesis. Impaired CDK5 activity is implicated in
Alzheimer's disease, amyotrophic lateral sclerosis,
Parkinson's disease, Huntington's disease and acute
neuronal injury.
Length = 284
Score = 167 bits (424), Expect = 4e-46
Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 8/213 (3%)
Query: 565 LLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
L K G+G YG V+KA ++ + VA+K++ ++ REI LK +H NI+
Sbjct: 5 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL-KHKNIVR 63
Query: 625 MLDIYKAVNNKDLYVVFEYMENDLNKVI---RDKILKDVHIRYIMFQLCNGLSYIHACKV 681
+ D+ + +K L +VFEY + DL K I ++ ++ MFQL GL++ H+ V
Sbjct: 64 LYDVLHS--DKKLTLVFEYCDQDLKKYFDSCNGDIDPEI-VKSFMFQLLKGLAFCHSHNV 120
Query: 682 MHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHH 741
+HRDLKP N+LI+K+ +K+ D GLAR+ C + + T WYR P++L + Y+
Sbjct: 121 LHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTS 180
Query: 742 VDIWSLGCILAEMLQS-KPLFPGASTSHQLQLI 773
+D+WS GCI AE+ + +PLFPG QL+ I
Sbjct: 181 IDMWSAGCIFAELANAGRPLFPGNDVDDQLKRI 213
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 166 bits (422), Expect = 5e-46
Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 6/198 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+G++G VY A DK+ + +A+K + + ++ + + REI L S Q HPNI+
Sbjct: 9 GRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQ-HPNIVRYYGS 67
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVIRD-KILKDVHIRYIMFQLCNGLSYIHACKVMHRDL 686
+ L + EY+ L+ +++ L + IR Q+ GL+Y+H+ ++HRD+
Sbjct: 68 ERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDI 127
Query: 687 KPSNILIDKSCSIKIGDLGLARSLSDS--KECLTEYIATRWYRAPEILISNRRYTHHVDI 744
K +NIL+D +K+ D G A+ L D E T ++ APE +I Y DI
Sbjct: 128 KGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPE-VIRGEEYGRAADI 186
Query: 745 WSLGCILAEMLQSKPLFP 762
WSLGC + EM KP +
Sbjct: 187 WSLGCTVIEMATGKPPWS 204
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with
Cyclin-Dependent Kinases (CDKs), which belong to a large
family of STKs that are regulated by their cognate
cyclins. Together, CDKs and cyclins are involved in the
control of cell-cycle progression, transcription, and
neuronal function. The association of PCTAIRE-like
proteins with cyclins has not been widely studied,
although PFTAIRE-1 has been shown to function as a CDK
which is regulated by cyclin D3 as well as the
membrane-associated cyclin Y. PCTAIRE-like proteins show
unusual expression patterns with high levels in
post-mitotic tissues, suggesting that they may be
involved in regulating post-mitotic cellular events.
Length = 291
Score = 166 bits (422), Expect = 1e-45
Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 25/223 (11%)
Query: 563 INLLKEGKGAYGIVYKAYDKNNKQYVAIKKI---------FEAFRNKTDAQRTYREILFL 613
L K G+G+Y VYK K Q VA+K+I F A R E L
Sbjct: 8 KKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIR----------EASLL 57
Query: 614 KSFQRHPNIITMLDIYKAVNNKDLYVVFEYMENDLNKVIRD--KILKDVHIRYIMFQLCN 671
K +H NI+T+ DI K L +VFEY++ DL + + D L ++R +FQL
Sbjct: 58 KDL-KHANIVTLHDIIHT--KKTLTLVFEYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLR 114
Query: 672 GLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEI 731
GL+Y H +V+HRDLKP N+LI + +K+ D GLAR+ S + + + T WYR P++
Sbjct: 115 GLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDV 174
Query: 732 LISNRRYTHHVDIWSLGCILAEMLQSKPLFPGAS-TSHQLQLI 773
L+ + Y+ +D+W +GCI EM +PLFPG++ QL I
Sbjct: 175 LLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKI 217
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 163 bits (415), Expect = 4e-45
Identities = 71/200 (35%), Positives = 108/200 (54%), Gaps = 12/200 (6%)
Query: 564 NLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNII 623
L K GKG +G VYKA K + VAIK I +K ++ EI LK +HPNI+
Sbjct: 4 ILEKIGKGGFGEVYKARHKRTGKEVAIKVI--KLESKEKKEKIINEIQILK-KCKHPNIV 60
Query: 624 TMLDIYKAVNNKDLYVVFEYMEN----DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHAC 679
Y + +L++V E+ DL K ++ L + I Y+ +L GL Y+H+
Sbjct: 61 KYYGSY--LKKDELWIVMEFCSGGSLKDLLKS-TNQTLTESQIAYVCKELLKGLEYLHSN 117
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYT 739
++HRD+K +NIL+ +K+ D GL+ LSD+K T + T ++ APE+ I+ + Y
Sbjct: 118 GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNT-MVGTPYWMAPEV-INGKPYD 175
Query: 740 HHVDIWSLGCILAEMLQSKP 759
+ DIWSLG E+ + KP
Sbjct: 176 YKADIWSLGITAIELAEGKP 195
>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 12.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 12 (CDK12) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK12 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK12 is also called Cdc2-related protein
kinase 7 (CRK7) or Cdc2-related kinase
arginine/serine-rich (CrkRS). It is a unique CDK that
contains an arginine/serine-rich (RS) domain, which is
predominantly found in splicing factors. CDK12 is widely
expressed in tissues. It interacts with cyclins L1 and
L2, and plays roles in regulating transcription and
alternative splicing.
Length = 302
Score = 160 bits (406), Expect = 2e-43
Identities = 86/234 (36%), Positives = 123/234 (52%), Gaps = 31/234 (13%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQR------TYREILFLKSFQRHPNI 622
G+G YG VYKA DK+ + VA+KK+ + D ++ REI L+ H NI
Sbjct: 16 GEGTYGQVYKARDKDTGELVALKKV------RLDNEKEGFPITAIREIKILRQLN-HRNI 68
Query: 623 ITMLDIYKAVNNKD-----------LYVVFEYMENDLNKVIRDKIL--KDVHIRYIMFQL 669
+ + +I V +K Y+VFEYM++DL ++ ++ + HI+ M QL
Sbjct: 69 VNLKEI---VTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 125
Query: 670 CNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSL-SDSKECLTEYIATRWYRA 728
GL+Y H +HRD+K SNIL++ IK+ D GLAR S+ T + T WYR
Sbjct: 126 LEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRP 185
Query: 729 PEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV-RPNP 781
PE+L+ RY +D+WS GCIL E+ KP+F QL+LI L P P
Sbjct: 186 PELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCP 239
>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is
expressed primarily in the brain, and to a lesser extent
in the heart and testis. Mice deficient in Jnk3 are
protected against kainic acid-induced seizures, stroke,
sciatic axotomy neural death, and neuronal death due to
NGF deprivation, oxidative stress, or exposure to
beta-amyloid peptide. This suggests that JNK3 may play
roles in the pathogenesis of these diseases.
Length = 355
Score = 161 bits (408), Expect = 3e-43
Identities = 93/234 (39%), Positives = 146/234 (62%), Gaps = 9/234 (3%)
Query: 559 LQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQR 618
L++ NL G GA GIV AYD + VAIKK+ F+N+T A+R YRE++ +K
Sbjct: 16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN- 74
Query: 619 HPNIITMLDIYKAVNN----KDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLS 674
H NII++L+++ + +D+Y+V E M+ +L +VI+ + L + Y+++Q+ G+
Sbjct: 75 HKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQME-LDHERMSYLLYQMLCGIK 133
Query: 675 YIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILIS 734
++H+ ++HRDLKPSNI++ C++KI D GLAR+ S +T Y+ TR+YRAPE+++
Sbjct: 134 HLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPEVILG 192
Query: 735 NRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQL-QLIVNLVRPNPPHADKF 787
Y +VDIWS+GCI+ EM++ K LFPG Q ++I L P P K
Sbjct: 193 -MGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKL 245
>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK1
specifically binds with JAMP (JNK1-associated membrane
protein), which regulates the duration of JNK1 activity
in response to stimuli. Specific JNK1 substrates include
Itch and SG10, which are implicated in Th2 responses and
airway inflammation, and microtubule dynamics and
axodendritic length, respectively. Mice deficient in
Jnk1 are protected against arthritis, obesity, type 2
diabetes, cardiac cell death, and non-alcoholic liver
disease, suggesting that JNK1 may play roles in the
pathogenesis of these diseases.
Length = 364
Score = 159 bits (403), Expect = 2e-42
Identities = 92/234 (39%), Positives = 145/234 (61%), Gaps = 9/234 (3%)
Query: 559 LQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQR 618
L++ NL G GA GIV AYD ++ VAIKK+ F+N+T A+R YRE++ +K
Sbjct: 23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN- 81
Query: 619 HPNIITMLDIYKAVNN----KDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLS 674
H NII +L+++ + +D+Y+V E M+ +L +VI+ + L + Y+++Q+ G+
Sbjct: 82 HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQME-LDHERMSYLLYQMLCGIK 140
Query: 675 YIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILIS 734
++H+ ++HRDLKPSNI++ C++KI D GLAR+ S +T Y+ TR+YRAPE+++
Sbjct: 141 HLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPEVILG 199
Query: 735 NRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQL-QLIVNLVRPNPPHADKF 787
Y +VDIWS+GCI+ EM++ LFPG Q ++I L P P K
Sbjct: 200 -MGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKL 252
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 155 bits (393), Expect = 7e-42
Identities = 74/199 (37%), Positives = 108/199 (54%), Gaps = 10/199 (5%)
Query: 564 NLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNII 623
NL K G+GA G VYKA D+ + VAIKK+ R + + EIL +K +HPNI+
Sbjct: 23 NLEKIGEGASGEVYKATDRATGKEVAIKKM--RLRKQNK-ELIINEILIMKDC-KHPNIV 78
Query: 624 TMLDIYKAVNNKDLYVVFEYME-NDLNKVIR--DKILKDVHIRYIMFQLCNGLSYIHACK 680
D Y +L+VV EYM+ L +I + + I Y+ ++ GL Y+H+
Sbjct: 79 DYYDSYLV--GDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQN 136
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTH 740
V+HRD+K NIL+ K S+K+ D G A L+ K + T ++ APE +I + Y
Sbjct: 137 VIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPE-VIKRKDYGP 195
Query: 741 HVDIWSLGCILAEMLQSKP 759
VDIWSLG + EM + +P
Sbjct: 196 KVDIWSLGIMCIEMAEGEP 214
>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-3 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-3 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-3 shows a
restricted pattern of expression and is present in
brain, kidney, and intestine. It is elevated in
Alzheimer's disease (AD) and has been shown to associate
with paired helical filaments (PHFs) and stimulate Tau
phosphorylation. As AD progresses, phosphorylated Tau
aggregates and forms PHFs, which leads to the formation
of neurofibrillary tangles (NFTs). In human glioma
cells, PCTAIRE-3 induces cell cycle arrest and cell
death.
Length = 288
Score = 153 bits (388), Expect = 3e-41
Identities = 81/222 (36%), Positives = 133/222 (59%), Gaps = 8/222 (3%)
Query: 559 LQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRT-YREILFLKSFQ 617
L+ + L K G+G Y V+K K + VA+K+I ++ A T RE+ LK+
Sbjct: 4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEI--RLEHEEGAPCTAIREVSLLKNL- 60
Query: 618 RHPNIITMLDIYKAVNNKDLYVVFEYMENDLNKVIRD--KILKDVHIRYIMFQLCNGLSY 675
+H NI+T+ DI + L +VFEY+++DL + + + ++ +++ MFQL GLSY
Sbjct: 61 KHANIVTLHDIIHT--ERCLTLVFEYLDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSY 118
Query: 676 IHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISN 735
H K++HRDLKP N+LI++ +K+ D GLAR+ S + + + T WYR P++L+ +
Sbjct: 119 CHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGS 178
Query: 736 RRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV 777
Y+ +D+W +GCIL EM +P+FPG++ +L LI L+
Sbjct: 179 TEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLL 220
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK4
partners with all three D-type cyclins (D1, D2, and D3)
and is also regulated by INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein and plays a
role in regulating the early G1 phase of the cell cycle.
It is expressed ubiquitously and is localized in the
nucleus. CDK4 also shows kinase activity towards Smad3,
a signal transducer of transforming growth factor
(TGF)-beta signaling which modulates transcription and
plays a role in cell proliferation and apoptosis. CDK4
is inhibited by the p21 inhibitor and is specifically
mutated in human melanoma.
Length = 288
Score = 153 bits (387), Expect = 4e-41
Identities = 85/218 (38%), Positives = 123/218 (56%), Gaps = 12/218 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQR--HPNIITML 626
G GAYG VYKA D ++ +VA+K + T RE+ LK + HPNI+ ++
Sbjct: 9 GVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLM 68
Query: 627 DIYKAVNNK---DLYVVFEYMENDLNKVIRDKI----LKDVHIRYIMFQLCNGLSYIHAC 679
D+ + +VFE+++ DL + DK+ L I+ +M Q GL ++HA
Sbjct: 69 DVCATSRTDRETKVTLVFEHVDQDL-RTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHAN 127
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYT 739
++HRDLKP NIL+ +K+ D GLAR S + LT + T WYRAPE+L+ + Y
Sbjct: 128 CIVHRDLKPENILVTSGGQVKLADFGLARIYS-CQMALTPVVVTLWYRAPEVLLQS-TYA 185
Query: 740 HHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV 777
VD+WS+GCI AEM + KPLF G S + QL I +L+
Sbjct: 186 TPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLI 223
>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-2 is also
referred to as ALS2CR7 (amyotrophic lateral sclerosis 2
(juvenile) chromosome region candidate 7). It may be
associated with amyotrophic lateral sclerosis 2 (ALS2),
an autosomal recessive form of juvenile ALS. The
function of PFTAIRE-2 is not yet known.
Length = 291
Score = 152 bits (384), Expect = 9e-41
Identities = 86/217 (39%), Positives = 118/217 (54%), Gaps = 13/217 (5%)
Query: 563 INLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTY---REILFLKSFQRH 619
+NL K G+G+Y VYK + N Q VA+K I KT+ + RE LK +H
Sbjct: 8 LNLEKLGEGSYATVYKGISRINGQLVALKVI----SMKTEEGVPFTAIREASLLKGL-KH 62
Query: 620 PNIITMLDIYKAVNNKDLYVVFEYMENDLNKVIRDKI--LKDVHIRYIMFQLCNGLSYIH 677
NI+ + DI + L VFEYM DL + + L ++R MFQL GL+YIH
Sbjct: 63 ANIVLLHDIIHT--KETLTFVFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIH 120
Query: 678 ACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRR 737
++HRDLKP N+LI +K+ D GLAR+ S + + + T WYR P++L+
Sbjct: 121 GQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATD 180
Query: 738 YTHHVDIWSLGCILAEMLQSKPLFPGASTS-HQLQLI 773
Y+ +DIW GCI EMLQ +P FPG S QL+ I
Sbjct: 181 YSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKI 217
>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-2 is
specifically expressed in neurons in the central nervous
system, mainly in terminally differentiated neurons. It
associates with Trap (Tudor repeat associator with
PCTAIRE-2) and could play a role in regulating
mitochondrial function in neurons.
Length = 309
Score = 151 bits (382), Expect = 3e-40
Identities = 86/246 (34%), Positives = 141/246 (57%), Gaps = 11/246 (4%)
Query: 559 LQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRT-YREILFLKSFQ 617
++ I L K G+G Y V+K K + VA+K+I ++ A T RE+ LK
Sbjct: 5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEI--RLEHEEGAPCTAIREVSLLKDL- 61
Query: 618 RHPNIITMLDIYKAVNNKDLYVVFEYMENDLNKVIRD--KILKDVHIRYIMFQLCNGLSY 675
+H NI+T+ DI +K L +VFEY++ DL + + D I+ +++ ++Q+ GL+Y
Sbjct: 62 KHANIVTLHDIVHT--DKSLTLVFEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAY 119
Query: 676 IHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISN 735
H KV+HRDLKP N+LI++ +K+ D GLAR+ S + + + T WYR P++L+ +
Sbjct: 120 CHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGS 179
Query: 736 RRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKH 795
Y+ +D+W +GCI EM +PLFPG++ +L LI L+ P ++ + G S
Sbjct: 180 SEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLL--GTP-TEETWPGISSND 236
Query: 796 EREKFN 801
E + +N
Sbjct: 237 EFKNYN 242
>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-1 is
expressed ubiquitously and is localized in the
cytoplasm. Its kinase activity is cell cycle dependent
and peaks at the S and G2 phases. PCTAIRE-1 is highly
expressed in the brain and may play a role in regulating
neurite outgrowth. It can also associate with Trap
(Tudor repeat associator with PCTAIRE-2), a
physiological partner of PCTAIRE-2; with p11, a small
dimeric protein with similarity to S100; and with 14-3-3
proteins, mediators of phosphorylation-dependent
interactions in many different proteins.
Length = 301
Score = 150 bits (380), Expect = 4e-40
Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 8/222 (3%)
Query: 559 LQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRT-YREILFLKSFQ 617
L+ I L K G+G Y VYK K VA+K+I ++ A T RE+ LK
Sbjct: 5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEI--RLEHEEGAPCTAIREVSLLKDL- 61
Query: 618 RHPNIITMLDIYKAVNNKDLYVVFEYMENDLNKVIRD--KILKDVHIRYIMFQLCNGLSY 675
+H NI+T+ DI K L +VFEY++ DL + + D + +++ +FQL GL+Y
Sbjct: 62 KHANIVTLHDIIHT--EKSLTLVFEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNY 119
Query: 676 IHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISN 735
H KV+HRDLKP N+LI++ +K+ D GLAR+ S + + + T WYR P+IL+ +
Sbjct: 120 CHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGS 179
Query: 736 RRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV 777
Y+ +D+W +GCI EM +PLFPG++ QL I ++
Sbjct: 180 TDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRIL 221
>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK2
is specifically translocated to the mitochondria during
dopaminergic cell death. Specific substrates include the
microtubule-associated proteins DCX and Tau, as well as
TIF-IA which is involved in ribosomal RNA synthesis
regulation. Mice deficient in Jnk2 show protection
against arthritis, type 1 diabetes, atherosclerosis,
abdominal aortic aneurysm, cardiac cell death,
TNF-induced liver damage, and tumor growth, indicating
that JNK2 may play roles in the pathogenesis of these
diseases.
Length = 359
Score = 151 bits (382), Expect = 9e-40
Identities = 79/210 (37%), Positives = 132/210 (62%), Gaps = 8/210 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G GA GIV A+D VA+KK+ F+N+T A+R YRE++ LK H NII++L++
Sbjct: 30 GSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVN-HKNIISLLNV 88
Query: 629 YKAVNN----KDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
+ + +D+Y+V E M+ +L +VI + L + Y+++Q+ G+ ++H+ ++HR
Sbjct: 89 FTPQKSLEEFQDVYLVMELMDANLCQVIHME-LDHERMSYLLYQMLCGIKHLHSAGIIHR 147
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
DLKPSNI++ C++KI D GLAR+ + +T Y+ TR+YRAPE+++ Y +VDI
Sbjct: 148 DLKPSNIVVKSDCTLKILDFGLARTAC-TNFMMTPYVVTRYYRAPEVILG-MGYKENVDI 205
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIV 774
WS+GCI+ E+++ +F G Q ++
Sbjct: 206 WSVGCIMGELVKGSVIFQGTDHIDQWNKVI 235
>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 6.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 6 (CDK6) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK6
is regulated by D-type cyclins and INK4 inhibitors. It
is active towards the retinoblastoma (pRb) protein,
implicating it to function in regulating the early G1
phase of the cell cycle. It is expressed ubiquitously
and is localized in the cytoplasm. It is also present in
the ruffling edge of spreading fibroblasts and may play
a role in cell spreading. It binds to the p21 inhibitor
without any effect on its own activity and it is
overexpressed in squamous cell carcinomas and
neuroblastomas. CDK6 has also been shown to inhibit cell
differentiation in many cell types.
Length = 290
Score = 147 bits (371), Expect = 6e-39
Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 12/227 (5%)
Query: 561 QQINLLKE-GKGAYGIVYKAYD-KNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQ- 617
QQ + E G+GAYG V+KA D KN ++VA+K++ + T RE+ L+ +
Sbjct: 1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET 60
Query: 618 -RHPNIITMLDI---YKAVNNKDLYVVFEYMENDLNKVIR---DKILKDVHIRYIMFQLC 670
HPN++ + D+ + L +VFE+++ DL + + + I+ +MFQL
Sbjct: 61 FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLL 120
Query: 671 NGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPE 730
GL ++H+ +V+HRDLKP NIL+ S IK+ D GLAR S + LT + T WYRAPE
Sbjct: 121 RGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYS-FQMALTSVVVTLWYRAPE 179
Query: 731 ILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLV 777
+L+ + Y VD+WS+GCI AEM + KPLF G+S QL I++++
Sbjct: 180 VLLQS-SYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVI 225
>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 258
Score = 144 bits (367), Expect = 9e-39
Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 24/243 (9%)
Query: 563 INLLKE-GKGAYGIVYKAY----DKNNKQYVAIKKIFEAFRNKTDAQRT--YREILFLKS 615
+ L K+ G+GA+G VYK + VA+K + E + ++ Q RE ++
Sbjct: 1 LTLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKE---DASEQQIEEFLREARIMRK 57
Query: 616 FQRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIR---YIMFQLCN 671
HPNI+ +L + + L +V EYM DL +R K++ + Q+
Sbjct: 58 LD-HPNIVKLLGV--CTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIAR 114
Query: 672 GLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKE--CLTEYIATRWYRAP 729
G+ Y+ + +HRDL N L+ ++ +KI D GL+R L D + RW AP
Sbjct: 115 GMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRWM-AP 173
Query: 730 EILISNRRYTHHVDIWSLGCILAEML-QSKPLFPGASTSHQLQLIVN-LVRPNPPHA-DK 786
E + ++T D+WS G +L E+ + +PG S + L+ + P PP+ +
Sbjct: 174 ES-LKEGKFTSKSDVWSFGVLLWEIFTLGEEPYPGMSNAEVLEYLKKGYRLPKPPNCPPE 232
Query: 787 FYA 789
Y
Sbjct: 233 LYK 235
>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase Like 5.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 5 (CDKL5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. Mutations in the gene encoding CDKL5,
previously called STK9, are associated with early onset
epilepsy and severe mental retardation [X-linked
infantile spasm syndrome (ISSX) or West syndrome]. In
addition, CDKL5 mutations also sometimes cause a
phenotype similar to Rett syndrome (RTT), a progressive
neurodevelopmental disorder. These pathogenic mutations
are located in the N-terminal portion of the protein
within the kinase domain.
Length = 287
Score = 144 bits (364), Expect = 4e-38
Identities = 81/224 (36%), Positives = 133/224 (59%), Gaps = 9/224 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+GAYG+V K K K+ VAIKK ++ N+ + T RE+ L++ ++ NI+ + +
Sbjct: 10 GEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQE-NIVELKEA 68
Query: 629 YKAVNNKDLYVVFEYMENDLNKVIRDK---ILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
++ LY+VFEY+E ++ +++ + + + +R ++QL + + H ++HRD
Sbjct: 69 FR--RRGKLYLVFEYVEKNMLELLEEMPNGVPPE-KVRSYIYQLIKAIHWCHKNDIVHRD 125
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKEC-LTEYIATRWYRAPEILISNRRYTHHVDI 744
+KP N+LI + +K+ D G AR+LS+ TEY+ATRWYR+PE+L+ Y VD+
Sbjct: 126 IKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLG-APYGKAVDM 184
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFY 788
WS+GCIL E+ +PLFPG S QL I ++ P P K +
Sbjct: 185 WSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLF 228
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 143 bits (363), Expect = 4e-38
Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 33/247 (13%)
Query: 563 INLLKE-GKGAYGIVYKAY----DKNNKQYVAIKKIFEAFRNKTDAQRT--YREILFLKS 615
+ L K+ G+GA+G VYK K VA+K + E + ++ Q RE ++
Sbjct: 1 LTLGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKE---DASEQQIEEFLREARIMRK 57
Query: 616 FQRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRDKI--LKDVHIRYIMFQLCNG 672
HPN++ +L + + LY+V EYME DL +R L + Q+ G
Sbjct: 58 LD-HPNVVKLLGV--CTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARG 114
Query: 673 LSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIAT-------RW 725
+ Y+ + +HRDL N L+ ++ +KI D GL+R L D +Y RW
Sbjct: 115 MEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYD-----DDYYRKRGGKLPIRW 169
Query: 726 YRAPEILISNRRYTHHVDIWSLGCILAEML-QSKPLFPGASTSHQLQLIVN-LVRPNPPH 783
APE + ++T D+WS G +L E+ + +PG S L+ + N P PP+
Sbjct: 170 M-APES-LKEGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEYLKNGYRLPQPPN 227
Query: 784 A-DKFYA 789
+ Y
Sbjct: 228 CPPELYD 234
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 147 bits (370), Expect = 5e-38
Identities = 70/234 (29%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDA-QRTYREILFLKSFQRHPNIITMLD 627
G+G++G VY A D+ + VA+K + + +K+ +R REI L S PNI+ + D
Sbjct: 9 GEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYD 65
Query: 628 IYKAVNNKDLYVVFEYMEN-DLNKVIRDKI----LKDVHIRYIMFQLCNGLSYIHACKVM 682
+ + LY+V EY++ L +++ L + +I+ Q+ + L Y+H+ ++
Sbjct: 66 FF--QDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGII 123
Query: 683 HRDLKPSNILIDK-SCSIKIGDLGLARSLSDSKE------CLTEYIATRWYRAPEIL--I 733
HRD+KP NIL+D+ +K+ D GLA+ L D + + T Y APE+L +
Sbjct: 124 HRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGL 183
Query: 734 SNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKF 787
S + DIWSLG L E+L P F G S + ++ P +
Sbjct: 184 SLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLAS 237
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 141 bits (357), Expect = 2e-37
Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 10/218 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYR-EILFLKSFQRHPNIITMLD 627
G+GA+G+VYK + +VAIK+I + K +A ++ EI LK+ + HPNI+ +
Sbjct: 9 GRGAFGVVYKGLNLETGDFVAIKQI-SLEKIKEEALKSIMQEIDLLKNLK-HPNIVKYIG 66
Query: 628 IYKAVNNKDLYVVFEYMEN-DLNKVIR--DKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
+ + LY++ EY EN L ++I+ + + Y+ +Q+ GL+Y+H V+HR
Sbjct: 67 SIE--TSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYV-YQVLQGLAYLHEQGVIHR 123
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
D+K +NIL K +K+ D G+A L+D + + T ++ APE+ I + DI
Sbjct: 124 DIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEV-IEMSGASTASDI 182
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP 782
WSLGC + E+L P + + L IV P P
Sbjct: 183 WSLGCTVIELLTGNPPYYDLNPMAALFRIVQDDHPPLP 220
>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional.
Length = 440
Score = 140 bits (354), Expect = 2e-35
Identities = 88/253 (34%), Positives = 141/253 (55%), Gaps = 29/253 (11%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G G++G+VY+A + + VAIKK+ + D Q RE+L +K+ H NII + D
Sbjct: 75 GNGSFGVVYEAICIDTSEKVAIKKVLQ------DPQYKNRELLIMKNLN-HINIIFLKDY 127
Query: 629 Y------KAVNNKDLYVVFEYMENDLNKVIR-----DKILKDVHIRYIMFQLCNGLSYIH 677
Y K N L VV E++ ++K ++ + L ++ +QLC L+YIH
Sbjct: 128 YYTECFKKNEKNIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIH 187
Query: 678 ACKVMHRDLKPSNILID-KSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNR 736
+ + HRDLKP N+LID + ++K+ D G A++L + ++ YI +R+YRAPE+++
Sbjct: 188 SKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSVS-YICSRFYRAPELMLGAT 246
Query: 737 RYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRP---------NPPHADKF 787
YT H+D+WSLGCI+AEM+ P+F G S+ QL I+ ++ NP +AD
Sbjct: 247 NYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIK 306
Query: 788 YAGFKSKHEREKF 800
+ K K ++ F
Sbjct: 307 FPDVKPKDLKKVF 319
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 2. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2
subfamily includes Aspergillus nidulans NIMA kinase, the
founding member of the Nek family, which was identified
in a screen for cell cycle mutants prevented from
entering mitosis. NIMA is essential for mitotic entry
and progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in
spindle checkpoint. An increase in the expression of the
human NEK2 gene is strongly associated with the
progression of non-Hodgkin lymphoma.
Length = 265
Score = 134 bits (339), Expect = 6e-35
Identities = 76/237 (32%), Positives = 118/237 (49%), Gaps = 26/237 (10%)
Query: 565 LLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTY--REILFLKSFQRHPNI 622
L GKG++G V K K++ + + K+I + N T+ ++ E+ L+ +HPNI
Sbjct: 5 LETIGKGSFGTVRKVRRKSDGKILVWKEI--DYGNMTEKEKQQLVSEVNILREL-KHPNI 61
Query: 623 ITMLDIYKAVNNKDLYVVFEYMEN-DLNKVI------RDKILKDVHIRYIMFQLCNGLSY 675
+ D +N+ LY+V EY E DL ++I R I ++ R I+ QL L
Sbjct: 62 VRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWR-ILTQLLLALYE 120
Query: 676 IH-----ACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPE 730
H V+HRDLKP+NI +D + ++K+GD GLA+ L Y+ T +Y +PE
Sbjct: 121 CHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPE 180
Query: 731 ILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNL----VRPNPPH 783
+++ Y DIWSLGC++ E+ P F + QLQL + R P
Sbjct: 181 Q-LNHMSYDEKSDIWSLGCLIYELCALSPPFTARN---QLQLASKIKEGKFRRIPYR 233
>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Phosphoinositide-dependent
kinase 1. Serine/Threonine Kinases (STKs),
Phosphoinositide-dependent kinase 1 (PDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PDK1
carries an N-terminal catalytic domain and a C-terminal
pleckstrin homology (PH) domain that binds
phosphoinositides. It phosphorylates the activation loop
of AGC kinases that are regulated by PI3K such as PKB,
SGK, and PKC, among others, and is crucial for their
activation. Thus, it contributes in regulating many
processes including metabolism, growth, proliferation,
and survival. PDK1 also has the ability to
autophosphorylate and is constitutively active in
mammalian cells. PDK1 is essential for normal embryo
development and is important in regulating cell volume.
Length = 280
Score = 132 bits (334), Expect = 5e-34
Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 30/243 (12%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIK---KIFEAFRNKTDAQRTYREILFLKSFQRHPNIITM 625
G+G++ V A +K + AIK K K + +E+L + HP II +
Sbjct: 10 GEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLN--GHPGIIKL 67
Query: 626 LDIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVH-IRYIMFQLCNGLSYIHACKVMH 683
Y + ++LY V EY N +L + IR D R+ ++ L Y+H+ ++H
Sbjct: 68 --YYTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGIIH 125
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDS------KECLTE--------------YIAT 723
RDLKP NIL+DK IKI D G A+ L + K T ++ T
Sbjct: 126 RDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGT 185
Query: 724 RWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPH 783
Y +PE L++ + D+W+LGCI+ +ML KP F G++ Q I+ L PP+
Sbjct: 186 AEYVSPE-LLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSFPPN 244
Query: 784 ADK 786
Sbjct: 245 FPP 247
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene
A-related kinase 6 and 7. Serine/Threonine Kinases
(STKs), Never In Mitosis gene A (NIMA)-related kinase 6
(Nek6) and Nek7 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The Nek6/7 subfamily is part of a family of 11 different
Neks (Nek1-11) that are involved in cell cycle control.
The Nek family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek6 and Nek7 are the shortest Neks,
consisting only of the catalytic domain and a very short
N-terminal extension. They show distinct expression
patterns and both appear to be downstream substrates of
Nek9. They are required for mitotic spindle formation
and cytokinesis. They may also be regulators of the p70
ribosomal S6 kinase.
Length = 267
Score = 131 bits (331), Expect = 6e-34
Identities = 74/201 (36%), Positives = 110/201 (54%), Gaps = 15/201 (7%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKK--IFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
K GKG + +VYKA + + VA+KK IFE K Q +EI LK HPN+I
Sbjct: 9 KIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKA-RQDCLKEIDLLKQLD-HPNVIK 66
Query: 625 MLDIYKAVNNKDLYVVFEYME-NDLNKVIR-----DKILKDVHIRYIMFQLCNGLSYIHA 678
L + + N +L +V E + DL+++I+ +++ + I QLC+ L ++H+
Sbjct: 67 YLASF--IENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHS 124
Query: 679 CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRY 738
++MHRD+KP+N+ I + +K+GDLGL R S + T +Y +PE I Y
Sbjct: 125 KRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPE-RIHENGY 183
Query: 739 THHVDIWSLGCILAEM--LQS 757
DIWSLGC+L EM LQS
Sbjct: 184 NFKSDIWSLGCLLYEMAALQS 204
>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein
Serine/Threonine Kinases, Mammalian Ste20-like protein
kinase 1 and 2. Serine/threonine kinases (STKs),
mammalian Ste20-like protein kinase 1 (MST1) and MST2
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MST1/2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST1, MST2, and
related proteins including Drosophila Hippo and
Dictyostelium discoideum Krs1 (kinase responsive to
stress 1). MST1/2 and Hippo are involved in a conserved
pathway that governs cell contact inhibition, organ size
control, and tumor development. MST1 activates the
mitogen-activated protein kinases (MAPKs) p38 and c-Jun
N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and
MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase
kinase kinase (MAPKKKK). Activation of JNK by MST1 leads
to caspase activation and apoptosis. MST1 has also been
implicated in cell proliferation and differentiation.
Krs1 may regulate cell growth arrest and apoptosis in
response to cellular stress.
Length = 256
Score = 129 bits (327), Expect = 2e-33
Identities = 81/246 (32%), Positives = 116/246 (47%), Gaps = 24/246 (9%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
K G+G+YG VYKA K Q VAIK + + D Q +EI LK P I+
Sbjct: 10 KLGEGSYGSVYKAIHKETGQVVAIKVV----PVEEDLQEIIKEISILKQ-CDSPYIVKYY 64
Query: 627 DIYKAVNNKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVM 682
Y N DL++V EY +D+ K I +K L + I I++Q GL Y+H+ K +
Sbjct: 65 GSY--FKNTDLWIVMEYCGAGSVSDIMK-ITNKTLTEEEIAAILYQTLKGLEYLHSNKKI 121
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
HRD+K NIL+++ K+ D G++ L+D+ I T ++ APE+ I Y +
Sbjct: 122 HRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEV-IQEIGYNNKA 180
Query: 743 DIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKHEREK-FN 801
DIWSLG EM + KP + + +I N PP + FN
Sbjct: 181 DIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPN----KPP------PTLSDPEKWSPEFN 230
Query: 802 QVVVKC 807
V KC
Sbjct: 231 DFVKKC 236
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled
Receptor Kinase (GRK), Serum- and Glucocorticoid-induced
Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase
(p70S6K or S6K), among others. AGC kinases share an
activation mechanism based on the phosphorylation of up
to three sites: the activation loop (A-loop), the
hydrophobic motif (HM) and the turn motif.
Phosphorylation at the A-loop is required of most AGC
kinases, which results in a disorder-to-order transition
of the A-loop. The ordered conformation results in the
access of substrates and ATP to the active site. A
subset of AGC kinases with C-terminal extensions
containing the HM also requires phosphorylation at this
site. Phosphorylation at the HM allows the C-terminal
extension to form an ordered structure that packs into
the hydrophobic pocket of the catalytic domain, which
then reconfigures the kinase into an active bi-lobed
state. In addition, growth factor-activated AGC kinases
such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require
phosphorylation at the turn motif (also called tail or
zipper site), located N-terminal to the HM at the
C-terminal extension. AGC kinases regulate many cellular
processes including division, growth, survival,
metabolism, motility, and differentiation. Many are
implicated in the development of various human diseases.
Length = 250
Score = 129 bits (326), Expect = 2e-33
Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 13/204 (6%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI--FEAFRNKTDAQRTYRE--ILFLKSFQRHPNIIT 624
GKG++G V K+ + A+K + + + K + + T E IL S HP I+
Sbjct: 2 GKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRK-EVEHTLTERNIL---SRINHPFIVK 57
Query: 625 MLDIYKAVNNKDLYVVFEYME-NDLNKVIRD-KILKDVHIRYIMFQLCNGLSYIHACKVM 682
+ Y + LY+V EY +L + + R+ ++ L Y+H+ ++
Sbjct: 58 L--HYAFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEERARFYAAEIVLALEYLHSLGII 115
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
+RDLKP NIL+D IK+ D GLA+ LS + T Y APE+ + + Y V
Sbjct: 116 YRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEV-LLGKGYGKAV 174
Query: 743 DIWSLGCILAEMLQSKPLFPGAST 766
D WSLG +L EML KP F
Sbjct: 175 DWWSLGVLLYEMLTGKPPFYAEDR 198
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 128 bits (325), Expect = 4e-33
Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 32/240 (13%)
Query: 563 INLLKE-GKGAYGIVYKAY----DKNNKQYVAIKKIFEAFRNKTDAQRT--YREILFLKS 615
+ L K+ G+GA+G VYK + + VA+K + E ++ +R E +K
Sbjct: 1 LELGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKE---GASEEEREEFLEEASIMKK 57
Query: 616 FQRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRDK--ILKDVHIRYIMFQLCNG 672
HPNI+ +L + + LY+V EYM DL +R L + + Q+ G
Sbjct: 58 LS-HPNIVRLLGV--CTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKG 114
Query: 673 LSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIAT-------RW 725
+ Y+ + +HRDL N L+ ++ +KI D GL+R + + Y +W
Sbjct: 115 MEYLESKNFVHRDLAARNCLVTENLVVKISDFGLSRDIYED----DYYRKRGGGKLPIKW 170
Query: 726 YRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPGASTSHQLQLIVNLVRPNPPH 783
APE + + ++T D+WS G +L E+ L +P +PG S L+L+ + R P
Sbjct: 171 M-APE-SLKDGKFTSKSDVWSFGVLLWEIFTLGEQP-YPGMSNEEVLELLEDGYRLPRPE 227
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases.
Protein Tyrosine Kinase (PTK) family, catalytic domain.
This PTKc family is part of a larger superfamily that
includes the catalytic domains of protein
serine/threonine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. They can be classified
into receptor and non-receptor tyr kinases. PTKs play
important roles in many cellular processes including,
lymphocyte activation, epithelium growth and
maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular
tyr kinase domain. RTKs are usually activated through
ligand binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are
distributed in different intracellular compartments and
are usually multi-domain proteins containing a catalytic
tyr kinase domain as well as various regulatory domains
such as SH3 and SH2. PTKs are usually autoinhibited and
require a mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop
is essential for optimal activity. Aberrant expression
of PTKs is associated with many development
abnormalities and cancers.
Length = 262
Score = 128 bits (324), Expect = 7e-33
Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 40/247 (16%)
Query: 569 GKGAYGIVYKAY---DKNNKQYVAIKKIFEAFRNKTDAQRT--YREILFLKSFQRHPNII 623
G+GA+G VYK VA+K + E + ++ +R +E +K HPN++
Sbjct: 4 GEGAFGEVYKGKLKGKDGKTTEVAVKTLKE---DASEEERKDFLKEARVMKKL-GHPNVV 59
Query: 624 TMLDIYKAVNNKDLYVVFEYMEN-DLNKVIR----------DKILKDVHIRYIMFQLCNG 672
+L + + LY+V EYME DL +R L + Q+ G
Sbjct: 60 RLLGV--CTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKG 117
Query: 673 LSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIAT-------RW 725
+ Y+ + K +HRDL N L+ + +KI D GL+R + D Y RW
Sbjct: 118 MEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDD----YYRKKTGGKLPIRW 173
Query: 726 YRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPGASTSHQLQLIVNLVR-PNPP 782
APE + + +T D+WS G +L E+ L + P +PG S L+ + R P P
Sbjct: 174 M-APE-SLKDGIFTSKSDVWSFGVLLWEIFTLGATP-YPGLSNEEVLEYLRKGYRLPKPE 230
Query: 783 HA-DKFY 788
+ D+ Y
Sbjct: 231 YCPDELY 237
>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-1 is
widely expressed except in the spleen and thymus. It is
highly expressed in the brain, heart, pancreas, testis,
and ovary, and is localized in the cytoplasm. It is
regulated by cyclin D3 and is inhibited by the p21 cell
cycle inhibitor. It has also been shown to interact with
the membrane-associated cyclin Y, which recruits the
protein to the plasma membrane.
Length = 303
Score = 128 bits (322), Expect = 2e-32
Identities = 87/254 (34%), Positives = 131/254 (51%), Gaps = 20/254 (7%)
Query: 565 LLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
L K G+G+Y VYK K N + VA+K I T RE LK +H NI+
Sbjct: 10 LEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFT-AIREASLLKGL-KHANIVL 67
Query: 625 MLDIYKAVNNKDLYVVFEYMENDLNKVIRDKILKDVH---IRYIMFQLCNGLSYIHACKV 681
+ DI + L +VFEY+ DL + + DK +H ++ +FQL GLSYIH +
Sbjct: 68 LHDIIHT--KETLTLVFEYVHTDLCQYM-DKHPGGLHPENVKLFLFQLLRGLSYIHQRYI 124
Query: 682 MHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHH 741
+HRDLKP N+LI + +K+ D GLAR+ S + + T WYR P++L+ + Y+
Sbjct: 125 LHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTC 184
Query: 742 VDIWSLGCILAEMLQSKPLFPG-ASTSHQLQLI-VNLVRPN----------PPHADKFYA 789
+D+W +GCI EM+Q FPG QL+ I + L PN P + +
Sbjct: 185 LDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFT 244
Query: 790 GFKSKHEREKFNQV 803
+ K+ R+ +N++
Sbjct: 245 LYSPKNLRQAWNKL 258
>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase,
Cell Division Cycle 2-like 6. Serine/Threonine Kinases
(STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDC2L6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDC2L6 is also called CDK8-like and was
previously referred to as CDK11. However, this is a
confusing nomenclature as CDC2L6 is distinct from
CDC2L1, which is represented by the two protein products
from its gene, called CDK11(p110) and CDK11(p58), as
well as the caspase-processed CDK11(p46). CDK11(p110),
CDK11(p58), and CDK11(p46)do not belong to this
subfamily. CDC2L6 is an associated protein of Mediator,
a multiprotein complex that provides a platform to
connect transcriptional and chromatin regulators and
cofactors, in order to activate and mediate RNA
polymerase II transcription. CDC2L6 is localized mainly
in the nucleus amd exerts an opposing effect to CDK8 in
VP16-dependent transcriptional activation by being a
negative regulator.
Length = 317
Score = 128 bits (323), Expect = 2e-32
Identities = 74/214 (34%), Positives = 125/214 (58%), Gaps = 24/214 (11%)
Query: 567 KEGKGAYGIVYKAYDKNNK--QYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
K G+G YG VYKA K+ K + A+K+I + REI L+ +HPN+I
Sbjct: 8 KVGRGTYGHVYKAKRKDGKDEKEYALKQI----EGTGISMSACREIALLREL-KHPNVIA 62
Query: 625 MLDIYKAVNNKDLYVVFEYMENDLNKVIR----------DKILKDVHIRYIMFQLCNGLS 674
+ ++ + +++ ++++F+Y E+DL +I+ L ++ +++Q+ +G+
Sbjct: 63 LQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIH 122
Query: 675 YIHACKVMHRDLKPSNILI----DKSCSIKIGDLGLARSLSDSKECLTEY---IATRWYR 727
Y+HA V+HRDLKP+NIL+ + +KI D+G AR + + L + + T WYR
Sbjct: 123 YLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYR 182
Query: 728 APEILISNRRYTHHVDIWSLGCILAEMLQSKPLF 761
APE+L+ R YT +DIW++GCI AE+L S+P+F
Sbjct: 183 APELLLGARHYTKAIDIWAIGCIFAELLTSEPIF 216
>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 8.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK8 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK8
can act as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDK8 phosphorylates cyclin
H, a subunit of the general transcription factor TFIIH,
which results in the inhibition of TFIIH-dependent
phosphorylation of the C-terminal domain (CTD) of RNAP
II, facilitating the inhibition of transcription. It has
also been shown to promote transcription by a mechanism
that is likely to involve RNAP II phosphorylation. CDK8
also functions as a stimulus-specific positive
coregulator of p53 transcriptional responses.
Length = 317
Score = 128 bits (322), Expect = 3e-32
Identities = 73/214 (34%), Positives = 125/214 (58%), Gaps = 24/214 (11%)
Query: 567 KEGKGAYGIVYKAYDKNNK--QYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
K G+G YG VYKA K+ K + A+K+I + REI L+ +HPN+I+
Sbjct: 8 KVGRGTYGHVYKAKRKDGKDDRDYALKQI----EGTGISMSACREIALLREL-KHPNVIS 62
Query: 625 MLDIYKAVNNKDLYVVFEYMENDLNKVIRDKILKDVH----------IRYIMFQLCNGLS 674
+ ++ + ++ ++++F+Y E+DL +I+ + ++ +++Q+ +G+
Sbjct: 63 LQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIH 122
Query: 675 YIHACKVMHRDLKPSNILI----DKSCSIKIGDLGLARSLSDSKECLTEY---IATRWYR 727
Y+HA V+HRDLKP+NIL+ + +KI D+G AR + + L + + T WYR
Sbjct: 123 YLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYR 182
Query: 728 APEILISNRRYTHHVDIWSLGCILAEMLQSKPLF 761
APE+L+ R YT +DIW++GCI AE+L S+P+F
Sbjct: 183 APELLLGARHYTKAIDIWAIGCIFAELLTSEPIF 216
>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 4.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4
(MEKK4) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK4 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK4 activates the c-Jun
N-terminal kinase (JNK) and p38 MAPK signaling pathways
by directly activating their respective MAPKKs,
MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively
known as stress-activated MAPKs, as they are activated
in response to a variety of environmental stresses and
pro-inflammatory cytokines. MEKK4 also plays roles in
the re-polarization of the actin cytoskeleton in
response to osmotic stress, in the proper closure of the
neural tube, in cardiovascular development, and in
immune responses.
Length = 264
Score = 125 bits (316), Expect = 6e-32
Identities = 65/212 (30%), Positives = 108/212 (50%), Gaps = 15/212 (7%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI-FEAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
G G +G VY A + + + +A+K+I + KT + E+ L+ +HPN++
Sbjct: 9 GGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKT-IKEIADEMKVLELL-KHPNLVKYYG 66
Query: 628 IYKAVNNKDLYVVFEY-MENDLNKVIRDKILKDVH-IRYIMFQLCNGLSYIHACKVMHRD 685
+ V+ + +Y+ EY L +++ + D H IR QL GL+Y+H+ ++HRD
Sbjct: 67 V--EVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRD 124
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSK----ECLTEYIATRWYRAPEILISNRRYTHH 741
+KP+NI +D + IK+GD G A L ++ E + T Y APE+ I+ + H
Sbjct: 125 IKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEV-ITGGKGKGH 183
Query: 742 ---VDIWSLGCILAEMLQSKPLFPGASTSHQL 770
DIWSLGC++ EM K + Q+
Sbjct: 184 GRAADIWSLGCVVLEMATGKRPWSELDNEFQI 215
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 125 bits (315), Expect = 1e-31
Identities = 70/207 (33%), Positives = 107/207 (51%), Gaps = 21/207 (10%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEA---FRNKTDAQRTYREILFLKSFQRHPNIITM 625
KGAYG V+ A K+ AIK I +A +N+ D T R+IL S + P ++ +
Sbjct: 2 SKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDIL---SQAQSPYVVKL 58
Query: 626 LDIYKAVNNKDLYVVFEYMEN-DLNKVIRD-KILKDVHIRYIMFQLCNGLSYIHACKVMH 683
++ N LY+V EY+ DL ++ + L + R + ++ L Y+H+ ++H
Sbjct: 59 YYSFQGKKN--LYLVMEYLPGGDLASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIH 116
Query: 684 RDLKPSNILIDKSCSIKIGDLGLAR---------SLSDSKECLTEYIATRWYRAPEILIS 734
RDLKP NILID + +K+ D GL++ D KE + T Y APE+++
Sbjct: 117 RDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKED-KRIVGTPDYIAPEVIL- 174
Query: 735 NRRYTHHVDIWSLGCILAEMLQSKPLF 761
+ ++ VD WSLGCIL E L P F
Sbjct: 175 GQGHSKTVDWWSLGCILYEFLVGIPPF 201
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar
proteins. Protein kinases (PKs), MAP kinase kinase
(MAPKK) subfamily, Plant MAPKKs and similar proteins,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is
important in differentiation and virulence.
Dictyostelium discoideum MEK1 is required for proper
chemotaxis. MEK1 null mutants display severe defects in
cell polarization and directional movement. Plants
contain multiple MAPKKs like other eukaryotes. The
Arabidopsis genome encodes for 10 MAPKKs while poplar
and rice contain 13 MAPKKs each. The functions of these
proteins have not been fully elucidated. There is
evidence to suggest that MAPK cascades are involved in
plant stress responses. In Arabidopsis, MKK3 plays a
role in pathogen signaling, MKK2 is involved in cold and
salt stress signaling, MKK4/MKK5 participates in innate
immunity, and MKK7 regulates basal and systemic acquired
resistance.
Length = 264
Score = 123 bits (312), Expect = 3e-31
Identities = 68/224 (30%), Positives = 111/224 (49%), Gaps = 17/224 (7%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+G+ G+VYK K + A+KKI ++ ++ RE+ L+S P ++
Sbjct: 10 GQGSSGVVYKVRHKPTGKIYALKKI-HVDGDEEFRKQLLRELKTLRS-CESPYVVKC--- 64
Query: 629 YKAV-NNKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHAC-KVM 682
Y A ++ +V EYM+ DL K + + + + YI Q+ GL Y+H ++
Sbjct: 65 YGAFYKEGEISIVLEYMDGGSLADLLK--KVGKIPEPVLAYIARQILKGLDYLHTKRHII 122
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
HRD+KPSN+LI+ +KI D G+++ L ++ + ++ T Y +PE I Y++
Sbjct: 123 HRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPE-RIQGESYSYAA 181
Query: 743 DIWSLGCILAEMLQSK-PLFPGASTS--HQLQLIVNLVRPNPPH 783
DIWSLG L E K P P S +Q I + P+ P
Sbjct: 182 DIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGPPPSLPA 225
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 122 bits (309), Expect = 8e-31
Identities = 77/254 (30%), Positives = 118/254 (46%), Gaps = 28/254 (11%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+G YG VYKA K Q VAIK + + + + E L+ + HPNI T
Sbjct: 15 GEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKE---EYNILRKYSNHPNIATFYGA 71
Query: 629 YKA----VNNKDLYVVFEYMEN----DLNKVIRD--KILKDVHIRYIMFQLCNGLSYIHA 678
+ N+ L++V E DL K +R K LK+ I YI+ + GL+Y+H
Sbjct: 72 FIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHE 131
Query: 679 CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISN--- 735
KV+HRD+K NIL+ K+ +K+ D G++ L + +I T ++ APE++ +
Sbjct: 132 NKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQP 191
Query: 736 -RRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSK 794
Y D+WSLG E+ KP H ++ + + R PP KS
Sbjct: 192 DASYDARSDVWSLGITAIELADGKPPL---CDMHPMRALFKIPRNPPP-------TLKSP 241
Query: 795 HE-REKFNQVVVKC 807
+KFN + +C
Sbjct: 242 ENWSKKFNDFISEC 255
>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2,
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii Never In Mitosis gene A
(NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii CNK2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes CNK1, and -2. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii CNK2 has both
cilliary and cell cycle functions. It influences
flagellar length through promoting flagellar
disassembly, and it regulates cell size, through
influencing the size threshold at which cells commit to
mitosis.
Length = 256
Score = 119 bits (300), Expect = 7e-30
Identities = 76/205 (37%), Positives = 108/205 (52%), Gaps = 16/205 (7%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQR--TYREILFLKSFQRHPNIITML 626
GKG+YG VYK ++ Q+ A+K++ + + +R EI L S HPNII+
Sbjct: 9 GKGSYGSVYKVKRLSDNQFYALKEV--DLGSMSQKEREDAVNEIRILASVN-HPNIISYK 65
Query: 627 DIYKAVNNKDLYVVFEYME-NDLNKVIRD-----KILKDVHIRYIMFQLCNGLSYIHACK 680
+ + N L +V EY DL+K I K++ + I I QL GL +H K
Sbjct: 66 EAFLDGNK--LCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQK 123
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTH 740
++HRDLK +NIL+ + +KIGDLG+++ L K I T Y APE+ R Y++
Sbjct: 124 ILHRDLKSANILLVANDLVKIGDLGISKVL--KKNMAKTQIGTPHYMAPEVW-KGRPYSY 180
Query: 741 HVDIWSLGCILAEMLQSKPLFPGAS 765
DIWSLGC+L EM P F S
Sbjct: 181 KSDIWSLGCLLYEMATFAPPFEARS 205
>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like
protein kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST3, MST4,
STK25, Schizosaccharomyces pombe Nak1 and Sid1,
Saccharomyces cerevisiae sporulation-specific protein 1
(SPS1), and related proteins. Nak1 is required by
fission yeast for polarizing the tips of actin
cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Sid1 is a component in the septation initiation network
(SIN) signaling pathway, and plays a role in
cytokinesis. SPS1 plays a role in regulating proteins
required for spore wall formation. MST4 plays a role in
mitogen-activated protein kinase (MAPK) signaling during
cytoskeletal rearrangement, morphogenesis, and
apoptosis. MST3 phosphorylates the STK NDR and may play
a role in cell cycle progression and cell morphology.
STK25 may play a role in the regulation of cell
migration and polarization.
Length = 274
Score = 119 bits (300), Expect = 1e-29
Identities = 74/232 (31%), Positives = 117/232 (50%), Gaps = 21/232 (9%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI--FEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
GKG++G VYKA DK Q VAIK I EA D Q+ EI FL S R P I
Sbjct: 10 GKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQ---EIQFL-SQCRSPYITKYY 65
Query: 627 DIYKAVNNKDLYVVFEYMEN----DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVM 682
+ + L+++ EY DL ++ L + +I +I+ ++ GL Y+H +
Sbjct: 66 GSF--LKGSKLWIIMEYCGGGSCLDL---LKPGKLDETYIAFILREVLLGLEYLHEEGKI 120
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
HRD+K +NIL+ + +K+ D G++ L+ + ++ T ++ APE+ I Y
Sbjct: 121 HRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEV-IKQSGYDEKA 179
Query: 743 DIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP--HADKFYAGFK 792
DIWSLG E+ + +P S H ++++ + + NPP +KF FK
Sbjct: 180 DIWSLGITAIELAKGEPPL---SDLHPMRVLFLIPKNNPPSLEGNKFSKPFK 228
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily includes MAP4K3, MAP4K1,
MAP4K2, MAP4K5, and related proteins. Vertebrate members
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
MAP4K4/6. MAP4Ks are involved in some MAPK signaling
pathways that are important in mediating cellular
responses to extracellular signals by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K1, also called haematopoietic
progenitor kinase 1 (HPK1), is a hematopoietic-specific
STK involved in many cellular signaling cascades
including MAPK, antigen receptor, apoptosis, growth
factor, and cytokine signaling. It participates in the
regulation of T cell receptor signaling and T
cell-mediated immune responses. MAP4K2 was referred to
as germinal center (GC) kinase because of its preferred
location in GC B cells. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. It is required in the activation
of S6 kinase by amino acids and for the phosphorylation
of the mTOR-regulated inhibitor of eukaryotic initiation
factor 4E. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 118 bits (297), Expect = 2e-29
Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 25/216 (11%)
Query: 554 KDREDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTY----RE 609
++ +L Q+I G G YG VYKA D + VAIK I K + + +E
Sbjct: 2 QEDYELIQRI-----GSGTYGDVYKARDIATGELVAIKVI------KLEPGDDFEIIQQE 50
Query: 610 ILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYME----NDLNKVIRDKILKDVHIRYI 665
I LK RHPNI+ Y + L++V EY D+ +V R L ++ I Y+
Sbjct: 51 ISMLKEC-RHPNIVAYFGSY--LRRDKLWIVMEYCGGGSLQDIYQVTRGP-LSELQIAYV 106
Query: 666 MFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRW 725
+ GL+Y+H +HRD+K +NIL+ + +K+ D G++ L+ + +I T +
Sbjct: 107 CRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPY 166
Query: 726 YRAPEILISNRR--YTHHVDIWSLGCILAEMLQSKP 759
+ APE+ R+ Y DIW+LG E+ + +P
Sbjct: 167 WMAPEVAAVERKGGYDGKCDIWALGITAIELAELQP 202
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 117 bits (295), Expect = 5e-29
Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 31/277 (11%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI-FEAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
G GA+G VYKA K + A K I E+ D EI L +HPNI+ + +
Sbjct: 14 GDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMV---EIDILSEC-KHPNIVGLYE 69
Query: 628 IYKAVNNKDLYVVFEYMEN---DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
Y L+++ E+ + D + ++ L + IRY+ Q+ L+++H+ KV+HR
Sbjct: 70 AY--FYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHR 127
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILI----SNRRYTH 740
DLK NIL+ +K+ D G++ + + +I T ++ APE++ + Y +
Sbjct: 128 DLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDY 187
Query: 741 HVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKHEREKF 800
DIWSLG L E+ Q +P P + +++++ +++ PP D + F
Sbjct: 188 KADIWSLGITLIELAQMEP--PHHEL-NPMRVLLKILKSEPPTLD------QPSKWSSSF 238
Query: 801 NQVVVKC-QKELQE-------LQSQVVEENTSKLKLQ 829
N + C K+ + L+ V + + ++
Sbjct: 239 NDFLKSCLVKDPDDRPTAAELLKHPFVSDQSDNKAIK 275
>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii FA2-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii FA2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes FA2 and CNK4. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii FA2 was discovered
in a genetic screen for deflagellation-defective
mutants. It is essential for
basal-body/centriole-associated microtubule severing,
and plays a role in cell cycle progression. No cellular
function has yet been ascribed to CNK4.
Length = 256
Score = 115 bits (289), Expect = 2e-28
Identities = 67/220 (30%), Positives = 116/220 (52%), Gaps = 11/220 (5%)
Query: 563 INLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNI 622
L K GKG++G+V+K K +K+ A+K+I + N+ + + E L I
Sbjct: 3 EILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLD-SSYI 61
Query: 623 ITMLDIYKAVNNKDLYVVFEYMEN----DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHA 678
I + + ++ L +V EY EN L K+ R + L + + Q+ GL+++H+
Sbjct: 62 IRYYESF--LDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHS 119
Query: 679 CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRY 738
K++HRD+K N+ +D ++KIGDLG+A+ LSD+ + T +Y +PE L ++ Y
Sbjct: 120 KKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPE-LCEDKPY 178
Query: 739 THHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVR 778
D+W+LG +L E K F ++Q LI+ ++R
Sbjct: 179 NEKSDVWALGVVLYECCTGKHPF---DANNQGALILKIIR 215
>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 5. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek5 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. The specific function of Nek5
is unknown.
Length = 257
Score = 114 bits (287), Expect = 3e-28
Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 12/222 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+G++G +Y A K++ ++ IK+I + + + +E++ L +HPNI+T
Sbjct: 9 GEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKM-KHPNIVTFFAS 67
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVI---RDKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
++ N L++V EY + DL K I R + + I Q+ GL +IH K++HR
Sbjct: 68 FQ--ENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHR 125
Query: 685 DLKPSNILIDKSCSI-KIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVD 743
D+K NI + K+ + K+GD G+AR L+DS E + T +Y +PEI NR Y + D
Sbjct: 126 DIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEI-CQNRPYNNKTD 184
Query: 744 IWSLGCILAEMLQSKPLFPGASTSHQLQLIV--NLVRPNPPH 783
IWSLGC+L E+ K F G + HQL L + P P+
Sbjct: 185 IWSLGCVLYELCTLKHPFEGNNL-HQLVLKICQGYFAPISPN 225
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in
cytoskeletal rearrangement, cell differentiation,
transformation and proliferation. OSR1 and SPAK contain
a conserved C-terminal (CCT) domain, which recognizes a
unique motif ([RK]FX[VI]) present in their activating
kinases (WNK1/WNK4) and their substrates.
Length = 267
Score = 113 bits (286), Expect = 6e-28
Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 29/264 (10%)
Query: 559 LQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQR 618
L + I G GA +VY A N + VAIK+I + + +T +E+ +
Sbjct: 5 LIEVI-----GVGATAVVYAAICLPNNEKVAIKRI-DLEKCQTSVDELRKEVQAMSQCN- 57
Query: 619 HPNIITMLDIYKAVNNKDLYVVFEYMEN----DLNK-VIRDKILKDVHIRYIMFQLCNGL 673
HPN++ + V +L++V Y+ D+ K L + I ++ ++ GL
Sbjct: 58 HPNVVKYYTSF--VVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGL 115
Query: 674 SYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKEC----LTEYIATRWYRAP 729
Y+H+ +HRD+K NIL+ + S+KI D G++ SL+D + ++ T + AP
Sbjct: 116 EYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAP 175
Query: 730 EILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP--HADKF 787
E++ Y DIWS G E+ + S +++++ ++ +PP
Sbjct: 176 EVMEQVHGYDFKADIWSFGITAIELATGAAPY---SKYPPMKVLMLTLQNDPPSLETGAD 232
Query: 788 YAGFKSKHEREKFNQVVVKC-QKE 810
Y + SK F +++ C QK+
Sbjct: 233 YKKY-SK----SFRKMISLCLQKD 251
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 1. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is
associated with centrosomes throughout the cell cycle.
It is involved in the formation of primary cilium and in
the maintenance of centrosomes. It cycles through the
nucleus and may be capable of relaying signals between
the cilium and the nucleus. Nek1 is implicated in the
development of polycystic kidney disease, which is
characterized by benign polycystic tumors formed by
abnormal overgrowth of renal epithelial cells. It
appears also to be involved in DNA damage response, and
may be important for both correct DNA damage checkpoint
activation and DNA repair.
Length = 256
Score = 113 bits (284), Expect = 9e-28
Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 11/227 (4%)
Query: 563 INLLKEGKGAYGIVYKAYDKNN-KQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPN 621
+ + K G+G++G K + KQYV IK+I + + + + + +E+ L S +HPN
Sbjct: 3 VKVKKIGEGSFGKAILVKSKEDGKQYV-IKEINISKMSPKEREESRKEVAVL-SNMKHPN 60
Query: 622 IITMLDIYKAVNNKDLYVVFEYMEN-DLNKVI---RDKILKDVHIRYIMFQLCNGLSYIH 677
I+ + ++ N +LY+V +Y E DL K I R + + I Q+C L ++H
Sbjct: 61 IVQYQESFE--ENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVH 118
Query: 678 ACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRR 737
K++HRD+K NI + K +IK+GD G+AR L+ + E I T +Y +PEI NR
Sbjct: 119 DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEI-CENRP 177
Query: 738 YTHHVDIWSLGCILAEMLQSKPLFPGASTSHQ-LQLIVNLVRPNPPH 783
Y + DIW+LGC+L EM K F + + L++I P H
Sbjct: 178 YNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPPVSSH 224
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 112 bits (283), Expect = 2e-27
Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 20/212 (9%)
Query: 556 REDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILF--- 612
R L N +K G+G+ GIV A DK+ + VA+KK+ + QR RE+LF
Sbjct: 18 RSYLD---NFVKIGEGSTGIVCIATDKSTGRQVAVKKM-----DLRKQQR--RELLFNEV 67
Query: 613 --LKSFQRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMFQL 669
++ +Q HPNI+ M Y + +L+VV E++E L ++ + + I + +
Sbjct: 68 VIMRDYQ-HPNIVEMYSSY--LVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLAV 124
Query: 670 CNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAP 729
LS++HA V+HRD+K +IL+ +K+ D G +S + T ++ AP
Sbjct: 125 LKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAP 184
Query: 730 EILISNRRYTHHVDIWSLGCILAEMLQSKPLF 761
E +IS Y VDIWSLG ++ EM+ +P +
Sbjct: 185 E-VISRLPYGTEVDIWSLGIMVIEMVDGEPPY 215
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including
inschemic heart disease, hypertension, vessel injury,
brain ischemia, Fanconi anemia, asthma, and pulmonary
edema, among others. ASK2 (also called MAPKKK6)
functions only in a heteromeric complex with ASK1, and
can activate ASK1 by direct phosphorylation. The
function of MAPKKK15 is still unknown.
Length = 268
Score = 112 bits (282), Expect = 2e-27
Identities = 75/237 (31%), Positives = 111/237 (46%), Gaps = 33/237 (13%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
GKG YGIVY A D + + +AIK+I E R+ Q + EI L S+ +H NI+ L
Sbjct: 17 GKGTYGIVYAARDLSTQVRIAIKEIPE--RDSRYVQPLHEEIA-LHSYLKHRNIVQYLG- 72
Query: 629 YKAVNNKDLYVVFEYMEN----DLNKVIRDK----ILKDVHIRYIMFQLCNGLSYIHACK 680
+ + + +F ME L+ ++R K + I + Q+ GL Y+H +
Sbjct: 73 --SDSENGFFKIF--MEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQ 128
Query: 681 VMHRDLKPSNILIDK-SCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRR-Y 738
++HRD+K N+L++ S +KI D G ++ L+ C + T Y APE++ R Y
Sbjct: 129 IVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGY 188
Query: 739 THHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKH 795
DIWSLGC + EM KP F +L P A F G H
Sbjct: 189 GAPADIWSLGCTIVEMATGKPPF------IELG---------EPQAAMFKVGMFKIH 230
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 109 bits (275), Expect = 1e-26
Identities = 58/196 (29%), Positives = 102/196 (52%), Gaps = 9/196 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQ---RTYREILFLKSFQRHPNIITM 625
G G++G VY+ + ++ + A+K++ A +T + + +EI L Q HPNI+
Sbjct: 9 GSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQ-HPNIVQY 67
Query: 626 LDIYKAVNNKDLYVVFEYME-NDLNKVIRD-KILKDVHIRYIMFQLCNGLSYIHACKVMH 683
L + +N LY+ E + L K+++ + IR Q+ GL Y+H +H
Sbjct: 68 LGTEREEDN--LYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVH 125
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVD 743
RD+K +NIL+D + +K+ D G+A+ + + + + + ++ APE++ Y D
Sbjct: 126 RDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKS-FKGSPYWMAPEVIAQQGGYGLAAD 184
Query: 744 IWSLGCILAEMLQSKP 759
IWSLGC + EM KP
Sbjct: 185 IWSLGCTVLEMATGKP 200
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 3. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present
in the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 109 bits (274), Expect = 2e-26
Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 10/220 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+G++G N+ Q A+K+I ++ + + + +E + L + +HPNI+ +
Sbjct: 9 GEGSFGRALLVQHVNSDQKYAMKEI-RLPKSSSAVEDSRKEAVLL-AKMKHPNIVAFKES 66
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVIRD---KILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
++A + LY+V EY + DL + I+ K+ + I Q+C G+ +IH +V+HR
Sbjct: 67 FEA--DGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHR 124
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
D+K NI + ++ +K+GD G AR L+ Y+ T +Y PEI N Y + DI
Sbjct: 125 DIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIW-ENMPYNNKSDI 183
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQ-LQLIVNLVRPNPPH 783
WSLGCIL E+ K F S + L++ +P P H
Sbjct: 184 WSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKPLPSH 223
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 109 bits (274), Expect = 2e-26
Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 21/249 (8%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKK--IFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
K G+G + VY+A +++ VA+KK IFE K Q +EI LK HPN+I
Sbjct: 9 KIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKA-RQDCVKEIDLLKQLN-HPNVIK 66
Query: 625 MLDIYKAVNNKDLYVVFEYME-NDLNKVI-----RDKILKDVHIRYIMFQLCNGLSYIHA 678
LD + + + +L +V E + DL+++I + +++ + + QLC+ + ++H+
Sbjct: 67 YLDSF--IEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHS 124
Query: 679 CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRY 738
+VMHRD+KP+N+ I + +K+GDLGL R S + T +Y +PE + N Y
Sbjct: 125 RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHEN-GY 183
Query: 739 THHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKHERE 798
DIWSLGC+L EM + F G +NL Y ++H E
Sbjct: 184 NFKSDIWSLGCLLYEMAALQSPFYGDK--------MNLFSLCQKIEQCDYPPLPTEHYSE 235
Query: 799 KFNQVVVKC 807
K ++V C
Sbjct: 236 KLRELVSMC 244
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein
Serine/Threonine Kinase, Yank1. Serine/Threonine
Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Yank1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily
contains uncharacterized STKs with similarity to the
human protein designated Yank1 or STK32A.
Length = 258
Score = 109 bits (274), Expect = 3e-26
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 21/226 (9%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTD------AQRTYREILFLKSFQRHPNI 622
GKGA+G V ++ K+ A+K + NK + E L+ HP +
Sbjct: 9 GKGAFGKVCIVQKRDTKKMFAMKYM-----NKQKCVEKGSVRNVLNERRILQEL-NHPFL 62
Query: 623 ITMLDIYKAVNNKDLYVVFEYMEN-DLN-KVIRDKILKDVHIRYIMFQLCNGLSYIHACK 680
+ + Y + +++Y+V + + DL + + + +++ + ++ L Y+H+
Sbjct: 63 VNLW--YSFQDEENMYLVVDLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKG 120
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTH 740
++HRD+KP NIL+D+ + I D +A ++ T T Y APE+L + Y+
Sbjct: 121 IIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTL-TTSTSGTPGYMAPEVLCR-QGYSV 178
Query: 741 HVDIWSLGCILAEMLQSKPLFPGAS---TSHQLQLIVNLVRPNPPH 783
VD WSLG E L+ K + G S P
Sbjct: 179 AVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPAT 224
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 108 bits (273), Expect = 4e-26
Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 14/226 (6%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQR-TYREILFLKSFQRHPNIITMLD 627
G G +G V K+ + A+K + + +T Q + E L+ HP I+ +
Sbjct: 2 GVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEEC-NHPFIVKLYR 60
Query: 628 IYKAVNNKDLYVVFEYMEN-DLNKVIRDK-ILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
+K + K +Y++ EY +L ++RD+ + + R+ + + Y+H +++RD
Sbjct: 61 TFK--DKKYIYMLMEYCLGGELWTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRD 118
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LKP N+L+D + +K+ D G A+ L ++ T + T Y APEI I N+ Y VD W
Sbjct: 119 LKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWT-FCGTPEYVAPEI-ILNKGYDFSVDYW 176
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPN-----PPHADK 786
SLG +L E+L +P F G +++ ++++ N P + DK
Sbjct: 177 SLGILLYELLTGRPPF-GEDDEDPMEIYNDILKGNGKLEFPNYIDK 221
>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine
Kinase, cAMP-dependent protein kinase. Serine/Threonine
Kinases (STKs), cAMP-dependent protein kinase (PKA)
subfamily, catalytic (c) subunit. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This subfamily is composed of the
cAMP-dependent proteins kinases, PKA and PRKX. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic (C) subunits
with a dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active C
subunits. PKA is present ubiquitously in cells and
interacts with many different downstream targets. It
plays a role in the regulation of diverse processes such
as growth, development, memory, metabolism, gene
expression, immunity, and lipolysis.
Length = 290
Score = 108 bits (272), Expect = 9e-26
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 25/212 (11%)
Query: 561 QQINLLKE-GKGAYGIVYKAYDKNNKQYVAIK--KIFEAFRNKTDAQRTYREILFLKSFQ 617
+K G G++G V K + +Y A+K + + K + E L+S
Sbjct: 1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLK-QVEHVLNEKRILQSI- 58
Query: 618 RHPNIITMLDIYKAVNNKDLYVVFEY-----MENDLNKVIRDKILKDVHIRYIMFQLCNG 672
RHP ++ + ++ ++ +LY+V EY + + L K R + R+ Q+
Sbjct: 59 RHPFLVNLYGSFQ--DDSNLYLVMEYVPGGELFSHLRKSGR---FPEPVARFYAAQVVLA 113
Query: 673 LSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKE--CLT-EYIATRWYRAP 729
L Y+H+ +++RDLKP N+L+D IKI D G A+ + C T EY+ AP
Sbjct: 114 LEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYL------AP 167
Query: 730 EILISNRRYTHHVDIWSLGCILAEMLQSKPLF 761
EI I ++ Y VD W+LG ++ EML P F
Sbjct: 168 EI-ILSKGYGKAVDWWALGILIYEMLAGYPPF 198
>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity
Protein Kinase, Mitogen-Activated Protein Kinase Kinase.
Protein kinases (PKs), MAP kinase kinase (MAPKK)
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK or MAP2K), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK or
MAP3K). MAPKKs are dual-specificity PKs that
phosphorylate their downstream targets, MAPKs, at
specific threonine and tyrosine residues. There are
three MAPK subfamilies: extracellular signal-regulated
kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In
mammalian cells, there are seven MAPKKs (named MKK1-7)
and 20 MAPKKKs. Each MAPK subfamily can be activated by
at least two cognate MAPKKs and by multiple MAPKKKs.
Length = 265
Score = 107 bits (269), Expect = 1e-25
Identities = 77/239 (32%), Positives = 109/239 (45%), Gaps = 27/239 (11%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G G G+V K + + +A+K I N+ ++ RE+ L P I+
Sbjct: 10 GAGNSGVVSKVLHRPTGKIMAVKTIRLEI-NEAIQKQILRELDILHKCN-SPYIVGF--- 64
Query: 629 YKA-VNNKDLYVVFEYMENDLNKVIRDKILKDVHIRY-------IMFQLCNGLSYIHAC- 679
Y A NN D+ + EYM + DKILK+V R I + GL+Y+H
Sbjct: 65 YGAFYNNGDISICMEYM----DGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKH 120
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYT 739
K++HRD+KPSNIL++ IK+ D G++ L +S ++ T Y APE I Y+
Sbjct: 121 KIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLA--KTFVGTSSYMAPE-RIQGNDYS 177
Query: 740 HHVDIWSLGCILAEM-LQSKPLFPGASTS----HQLQLIVNLVRPNPPHADKFYAGFKS 793
DIWSLG L E+ P P LQ IVN P P + KF F+
Sbjct: 178 VKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLP-SGKFSPDFQD 235
>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein
Serine/Threonine Kinase, Group I p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group I, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs are
implicated in the regulation of many cellular processes
including growth factor receptor-mediated proliferation,
cell polarity, cell motility, cell death and survival,
and actin cytoskeleton organization. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs, also called conventional PAKs, include
PAK1, PAK2, and PAK3. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). They interact
with the SH3 domain containing proteins Nck, Grb2 and
PIX. Binding of group I PAKs to activated GTPases leads
to conformational changes that destabilize the AID,
allowing autophosphorylation and full activation of the
kinase domain. Known group I PAK substrates include
MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc,
Stat5a, and Aurora A, among others.
Length = 293
Score = 107 bits (268), Expect = 3e-25
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 7/227 (3%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
K G+GA G VY A D Q VAIK++ + + + EIL ++ +HPNI+ L
Sbjct: 26 KIGQGASGTVYTAIDVATGQEVAIKQM--NLQQQPKKELIINEILVMRE-NKHPNIVNYL 82
Query: 627 DIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
D Y + +L+VV EY+ L V+ + + + I + + L ++H+ +V+HRD
Sbjct: 83 DSY--LVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRD 140
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
+K NIL+ S+K+ D G ++ + + + T ++ APE+ ++ + Y VDIW
Sbjct: 141 IKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV-VTRKAYGPKVDIW 199
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFK 792
SLG + EM++ +P + + L LI P + +K A F+
Sbjct: 200 SLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFR 246
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK2 and MEKK3 activate MEK5 (also called MKK5), which
activates extracellular signal-regulated kinase 5
(ERK5). The ERK5 cascade plays roles in promoting cell
proliferation, differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development.
MEKK2 and MEKK3 can also activate the MAPKs, c-Jun
N-terminal kinase (JNK) and p38, through their
respective MAPKKs.
Length = 263
Score = 105 bits (264), Expect = 4e-25
Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 20/203 (9%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYR----EILFLKSFQRHPNIIT 624
G+GA+G VY YD + + +A+K+ + + ++ EI LK+ Q H I+
Sbjct: 11 GQGAFGRVYLCYDVDTGRELAVKQ-VPFDPDSPETKKEVNALECEIQLLKNLQ-HERIVQ 68
Query: 625 MLDIYKAVNNKDLYVVFEYMENDLNKVIRDKI-----LKDVHIRYIMFQLCNGLSYIHAC 679
+ +++ L + EYM ++D++ L + R Q+ G+ Y+H+
Sbjct: 69 YYGCLR--DDETLSIFMEYMPGG---SVKDQLKAYGALTETVTRKYTRQILEGVEYLHSN 123
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSD---SKECLTEYIATRWYRAPEILISNR 736
++HRD+K +NIL D + ++K+GD G ++ L S + T ++ +PE+ IS
Sbjct: 124 MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEV-ISGE 182
Query: 737 RYTHHVDIWSLGCILAEMLQSKP 759
Y D+WS+GC + EML KP
Sbjct: 183 GYGRKADVWSVGCTVVEMLTEKP 205
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 9. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the
Ran GTPase, and is implicated in microtubule
organization. Nek9 associates with FACT (FAcilitates
Chromatin Transcription) and modulates interphase
progression. It also interacts with Nek6, and Nek7,
during mitosis, resulting in their activation.
Length = 256
Score = 104 bits (261), Expect = 1e-24
Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 11/216 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
GKGA+G + V K++ ++ + + EI+ L Q HPNII +
Sbjct: 9 GKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQ-HPNIIAYYNH 67
Query: 629 YKAVNNKDLYVVFEYME--NDLNKVIR--DKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
+ +++ L + EY +K++R ++ ++ + + +FQ+ + +SYIH ++HR
Sbjct: 68 F--MDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHR 125
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
D+K NI + K+ IK+GD G+++ L + T +Y +PE L +Y DI
Sbjct: 126 DIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPE-LCQGVKYNFKSDI 184
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPN 780
W+LGC+L E+L K F ++ L L+V +V+ N
Sbjct: 185 WALGCVLYELLTLKRTFDA---TNPLNLVVKIVQGN 217
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 105 bits (263), Expect = 1e-24
Identities = 66/206 (32%), Positives = 98/206 (47%), Gaps = 23/206 (11%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRT-YREILFLKSFQRHPNIITMLD 627
G+GA G V K KN A+K I D Q+ RE+ KS + P I+
Sbjct: 10 GEGAGGSVTKCRLKNTGMIFALKTITT--DPNPDLQKQILRELEINKSCK-SPYIVKYYG 66
Query: 628 IYKAVNNKDLYVVFEYME-NDLNKVIRDKILKDVHIR----------YIMFQLCNGLSYI 676
+ ++ + + EY E L D I K V R I + GLSY+
Sbjct: 67 AFLDESSSSIGIAMEYCEGGSL-----DSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYL 121
Query: 677 HACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNR 736
H+ K++HRD+KPSNIL+ + +K+ D G++ L +S + T +Y APE I +
Sbjct: 122 HSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLA--GTFTGTSFYMAPE-RIQGK 178
Query: 737 RYTHHVDIWSLGCILAEMLQSKPLFP 762
Y+ D+WSLG L E+ Q++ FP
Sbjct: 179 PYSITSDVWSLGLTLLEVAQNRFPFP 204
>gnl|CDD|241275 cd01242, PH_ROCK, Rho-associated coiled-coil containing protein
kinase pleckstrin homology (PH) domain. ROCK is a
serine/threonine kinase that binds GTP-Rho. It consists
of a kinase domain, a coiled coil region and a PH
domain. The ROCK PH domain is interrupted by a C1
domain. ROCK plays a role in cellular functions, such as
contraction, adhesion, migration, and proliferation and
in the regulation of apoptosis. There are two ROCK
isoforms, ROCK1 and ROCK2. In ROCK2 the Rho Binding
Domain (RBD) and the PH domain work together in membrane
localization with RBD receiving the RhoA signal and the
PH domain receiving the phospholipid signal. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 126
Score = 99.0 bits (247), Expect = 2e-24
Identities = 42/50 (84%), Positives = 47/50 (94%)
Query: 871 SRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDKQNTDPELEL 920
SRLEGW+SIPNKQNIKRHGWKKQ+VVVSSKKI+FYNSE DKQN+DP L +
Sbjct: 1 SRLEGWLSIPNKQNIKRHGWKKQFVVVSSKKILFYNSEQDKQNSDPFLII 50
Score = 99.0 bits (247), Expect = 2e-24
Identities = 44/71 (61%), Positives = 54/71 (76%), Gaps = 3/71 (4%)
Query: 1124 RSVTQGDVIRADAKDIPRIFQLLYAGEGEARRPEDGGAELPAVLRGGDEKPGIIALKGHE 1183
RSVTQGDVIRADAK+IPRIFQ+LYA EGE+R P + + DEK G+I+ KGH+
Sbjct: 59 RSVTQGDVIRADAKEIPRIFQILYANEGESRNPSELSSSDQLE---QDEKAGVISHKGHD 115
Query: 1184 FLNISYHMPTT 1194
F+ ISYHMPT+
Sbjct: 116 FVPISYHMPTS 126
>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1
(MEKK1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK1 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK1 activates the extracellular
signal-regulated kinase 1/2 (ERK1/2) and c-Jun
N-terminal kinase (JNK) pathways by activating their
respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively.
MEKK1 is important in regulating cell survival and
apoptosis. MEKK1 also plays a role in cell migration,
tissue maintenance and homeostasis, and wound healing.
Length = 268
Score = 103 bits (258), Expect = 3e-24
Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 19/227 (8%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTY----REILFLKSFQRHPNIIT 624
G GA+ Y+A D +A+K++ ++ + +EI + HP+II
Sbjct: 9 GTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLN-HPHIIR 67
Query: 625 MLDIYKAVNNKDLYVVF-EYMENDLNKVIRDK---ILKDVHIRYIMFQLCNGLSYIHACK 680
M A + +F E+M + K + V I Y QL GLSY+H +
Sbjct: 68 M---LGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKEAVIINYTE-QLLRGLSYLHENQ 123
Query: 681 VMHRDLKPSNILIDKSCS-IKIGDLG----LARSLSDSKECLTEYIATRWYRAPEILISN 735
++HRD+K +N+LID + ++I D G LA + + E + + T + APE+L
Sbjct: 124 IIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVL-RG 182
Query: 736 RRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP 782
+Y D+WS+GC++ EM +KP + S+ L LI +
Sbjct: 183 EQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTA 229
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Nak1 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nak1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity
and morphogenesis. Kic1p interacts with Cdc31p, the
yeast homologue of centrin, and phosphorylates
substrates in a Cdc31p-dependent manner.
Length = 277
Score = 103 bits (258), Expect = 4e-24
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 9/217 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRH--PNIITML 626
G+GAYG VY+ + VA+K I D RE+ L ++ PNI
Sbjct: 10 GRGAYGAVYRGKHVPTGRVVALK-IINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYY 68
Query: 627 DIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
Y + L+++ EY E + +++ + + +I I+ ++ L YIH V+HRD
Sbjct: 69 GSY--LKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVGVIHRD 126
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
+K +NIL+ + ++K+ D G+A L+ + + ++ T ++ APE++ + Y DIW
Sbjct: 127 IKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIW 186
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP 782
SLG + EM P + + LI + PP
Sbjct: 187 SLGITIYEMATGNPPYSDVDAFRAMMLI---PKSKPP 220
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 102 bits (257), Expect = 5e-24
Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 26/212 (12%)
Query: 569 GKGAYGIVYKAYDKNNKQ-YVAIKKIF---EAFR-NKTDAQRTYR----EILFLKSFQRH 619
G GA+G VYK KNN Q +A+K+I AF +K + ++ E+ +K RH
Sbjct: 9 GSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRH 68
Query: 620 PNIITMLDIYKAVNNKDLYVVFEYMENDLNKVIRDKI--LKDVHIRY-------IMFQLC 670
PNI+ + + N LY+V + +E + + LK+ R+ I Q+
Sbjct: 69 PNIVRYYKTF--LENDRLYIVMDLIEG---APLGEHFNSLKEKKQRFTEERIWNIFVQMV 123
Query: 671 NGLSYIHACK-VMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAP 729
L Y+H K ++HRDL P+NI++ + + I D GLA+ + LT + T Y P
Sbjct: 124 LALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESK-LTSVVGTILYSCP 182
Query: 730 EILISNRRYTHHVDIWSLGCILAEMLQSKPLF 761
EI + N Y D+W+ GCIL +M +P F
Sbjct: 183 EI-VKNEPYGEKADVWAFGCILYQMCTLQPPF 213
>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 8. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek8 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek8 contains an
N-terminal kinase catalytic domain and a C-terminal RCC1
(regulator of chromosome condensation) domain. A double
point mutation in Nek8 causes cystic kidney disease in
mice that genetically resembles human autosomal
recessive polycystic kidney disease (ARPKD). Nek8 is
also associated with a rare form of juvenile renal
cystic disease, nephronophthisis type 9. It has been
suggested that a defect in the ciliary localization of
Nek8 contributes to the development of cysts manifested
by these diseases.
Length = 256
Score = 102 bits (256), Expect = 5e-24
Identities = 68/202 (33%), Positives = 104/202 (51%), Gaps = 10/202 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+GA+GIV+ K +++ V IK+I K + E LK HPNII +
Sbjct: 9 GRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLS-HPNIIEYYEN 67
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVIRDK---ILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
+ + +K L +V EY L + I+ + +L + I + Q+ L ++H ++HR
Sbjct: 68 F--LEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHR 125
Query: 685 DLKPSNILIDKSCSI-KIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVD 743
DLK NIL+DK + KIGD G+++ LS SK + T Y +PE L + Y D
Sbjct: 126 DLKTQNILLDKHKMVVKIGDFGISKILS-SKSKAYTVVGTPCYISPE-LCEGKPYNQKSD 183
Query: 744 IWSLGCILAEMLQSKPLFPGAS 765
IW+LGC+L E+ K F A+
Sbjct: 184 IWALGCVLYELASLKRAFEAAN 205
>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like
Protein Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, fungal Rim15-like kinases,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include Saccharomyces
cerevisiae Rim15, Schizosaccharomyces pombe cek1, and
similar fungal proteins. They contain a central
catalytic domain, which contains an insert relative to
MAST kinases. In addition, Rim15 contains a C-terminal
signal receiver (REC) domain while cek1 contains an
N-terminal PAS domain. Rim15 (or Rim15p) functions as a
regulator of meiosis. It acts as a downstream effector
of PKA and regulates entry into stationary phase (G0).
Thus, it plays a crucial role in regulating yeast
proliferation, differentiation, and aging. Cek1 may
facilitate progression of mitotic anaphase.
Length = 260
Score = 100 bits (250), Expect = 3e-23
Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 17/203 (8%)
Query: 566 LKE-GKGAYGIVYKAYDKNNKQYVAIKKIFEA---FRNKTDAQRTYREILFLKSFQRHPN 621
LK KGA+G VY A ++ Y AIK + ++ +N+ + R I+ ++ P
Sbjct: 1 LKPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGES--PY 58
Query: 622 IITMLDIYKAVNNKD-LYVVFEYMEN-DLNKVIRD-KILKDVHIRYIMFQLCNGLSYIHA 678
+ + Y + +KD LY+V EY+ D +I+ L + + + ++ G+ +H
Sbjct: 59 VAKL---YYSFQSKDYLYLVMEYLNGGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQ 115
Query: 679 CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRY 738
++HRD+KP N+LID++ +K+ D GL+R+ ++K +++ T Y APE ++
Sbjct: 116 RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENK----KFVGTPDYLAPETILGVGD- 170
Query: 739 THHVDIWSLGCILAEMLQSKPLF 761
D WSLGC++ E L P F
Sbjct: 171 DKMSDWWSLGCVIFEFLFGYPPF 193
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 101 bits (253), Expect = 4e-23
Identities = 71/219 (32%), Positives = 120/219 (54%), Gaps = 24/219 (10%)
Query: 555 DREDLQQQINLLKE-GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDA-QRTYREILF 612
++D ++ L+E G G++G VY A D + VAIKK+ + + + Q +E+ F
Sbjct: 9 SKDDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRF 68
Query: 613 LKSFQRHPNIITMLDIYKAVNNKD--LYVVFEYM---ENDLNKVIRDKILKDVHIRYIMF 667
L+ RHPN I YK ++ ++V EY +D+ +V + K L++V I I
Sbjct: 69 LQQL-RHPNTIE----YKGCYLREHTAWLVMEYCLGSASDILEVHK-KPLQEVEIAAICH 122
Query: 668 QLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYR 727
GL+Y+H+ + +HRD+K NIL+ + ++K+ D G A +S + ++ T ++
Sbjct: 123 GALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPAN----SFVGTPYWM 178
Query: 728 APEILIS--NRRYTHHVDIWSLG--CI-LAEMLQSKPLF 761
APE++++ +Y VD+WSLG CI LAE + PLF
Sbjct: 179 APEVILAMDEGQYDGKVDVWSLGITCIELAE--RKPPLF 215
>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Rho-associated
coiled-coil containing protein kinase (ROCK) and Nuclear
Dbf2-Related (NDR)-like kinase subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK- and NDR-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include ROCK and
ROCK-like proteins such as DMPK, MRCK, and CRIK, as well
as NDR and NDR-like proteins such as LATS, CBK1 and
Sid2p. ROCK and CRIK are effectors of the small GTPase
Rho, while MRCK is an effector of the small GTPase
Cdc42. NDR and NDR-like kinases contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. Proteins in this subfamily are involved in
regulating many cellular functions including
contraction, motility, division, proliferation,
apoptosis, morphogenesis, and cytokinesis.
Length = 350
Score = 102 bits (256), Expect = 4e-23
Identities = 70/235 (29%), Positives = 105/235 (44%), Gaps = 41/235 (17%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAF---RNKTDAQRTYREILFLKSFQRHPNIITM 625
G+GA+G V+ DK+ Q A+K + ++ RN+ R R+IL + P I+ +
Sbjct: 10 GRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDIL---ADADSPWIVKL 66
Query: 626 LDIYKAVNNKDLYVVFEYMEN-DL-NKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMH 683
Y + + LY+V EYM DL N +IR + + R+ + +L L +H +H
Sbjct: 67 --YYSFQDEEHLYLVMEYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGFIH 124
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDSKE-------------CLTEYIATRW----- 725
RD+KP NILID IK+ D GL + ++ +K+ + R
Sbjct: 125 RDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRR 184
Query: 726 -----------YRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQ 769
Y APE+L Y D WSLG IL EML P F + T +
Sbjct: 185 VRANSTVGTPDYIAPEVLRG-TPYGLECDWWSLGVILYEMLYGFPPF-YSDTLQE 237
>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and
Dbf2p-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), ROCK- and NDR-like
subfamily, fungal Sid2p- and Dbf2p-like proteins,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sid2p- and
Dbf2p-like group is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This group contains fungal kinases including
Schizosaccharomyces pombe Sid2p and Saccharomyces
cerevisiae Dbf2p. Group members show similarity to NDR
kinases in that they contain an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Sid2p plays a
crucial role in the septum initiation network (SIN) and
in the initiation of cytokinesis. Dbf2p is important in
regulating the mitotic exit network (MEN) and in
cytokinesis.
Length = 333
Score = 101 bits (253), Expect = 5e-23
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 20/210 (9%)
Query: 565 LLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQR---TYREILFLKSFQRHPN 621
L + G+G YG V+ A K+ + VA+K++ ++ K + R T R+IL + +
Sbjct: 6 LTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDIL---TTTKSEW 62
Query: 622 IITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRDK-ILKDVHIRYIMFQLCNGLSYIHAC 679
++ +L Y +++ LY+ EY+ D ++ + +L + H R+ M ++ + +H
Sbjct: 63 LVKLL--YAFQDDEYLYLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHEL 120
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLT---EYIATRWYRAPEILISNR 736
+HRDLKP N LID S IK+ D GL SK +T + + Y APE+L +
Sbjct: 121 GYIHRDLKPENFLIDASGHIKLTDFGL------SKGIVTYANSVVGSPDYMAPEVL-RGK 173
Query: 737 RYTHHVDIWSLGCILAEMLQSKPLFPGAST 766
Y VD WSLGC+L E L P F G++
Sbjct: 174 GYDFTVDYWSLGCMLYEFLCGFPPFSGSTP 203
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 99.3 bits (247), Expect = 7e-23
Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 36/246 (14%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKK--IFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
K G+G + VY+A + VA+KK IF+ K +EI LK HPN+I
Sbjct: 9 KIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKA-RADCIKEIDLLKQLN-HPNVIK 66
Query: 625 MLDIYKAVNNKDLYVVFEYME-NDLNKVIRD-----KILKDVHIRYIMFQLCNGLSYIHA 678
+ + + +L +V E + DL+++I+ +++ + + QLC+ L ++H+
Sbjct: 67 YYASF--IEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHS 124
Query: 679 CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRY 738
+VMHRD+KP+N+ I + +K+GDLGL R S + T +Y +PE + N Y
Sbjct: 125 RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHEN-GY 183
Query: 739 THHVDIWSLGCILAEM--LQSK--------------------PLFPGASTSHQLQLIVNL 776
DIWSLGC+L EM LQS P P S +L+ +VN+
Sbjct: 184 NFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNM 243
Query: 777 -VRPNP 781
+ P+P
Sbjct: 244 CINPDP 249
>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine
Kinase (PTK) family; Janus kinase (Jak) subfamily;
catalytic (c) domain (repeat 2). The Jak subfamily is
composed of Jak1, Jak2, Jak3, TYK2, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal tyr kinase
catalytic domain. Most Jaks are expressed in a wide
variety of tissues, except for Jak3, which is expressed
only in hematopoietic cells. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jaks are also involved in regulating the surface
expression of some cytokine receptors. The Jak-STAT
pathway is involved in many biological processes
including hematopoiesis, immunoregulation, host defense,
fertility, lactation, growth, and embryogenesis.
Length = 284
Score = 99.8 bits (249), Expect = 8e-23
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 21/201 (10%)
Query: 569 GKGAYGIVYKA-YDKNNKQ---YVAIKKIFEAFRNKTDAQRT--YREILFLKSFQRHPNI 622
G+G +G V YD VA+K + + + R+ REI L++ H NI
Sbjct: 13 GEGHFGKVELCRYDPLGDNTGEQVAVKSLN---HSGEEQHRSDFEREIEILRTLD-HENI 68
Query: 623 ITMLDIYKAVNNKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHA 678
+ + + + L ++ EY+ D + RD+I + + Q+C G+ Y+ +
Sbjct: 69 VKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLF-SSQICKGMDYLGS 127
Query: 679 CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLT----EYIATRWYRAPEILIS 734
+ +HRDL NIL++ +KI D GLA+ L + K+ WY APE L
Sbjct: 128 QRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWY-APECL-R 185
Query: 735 NRRYTHHVDIWSLGCILAEML 755
+++ D+WS G L E+
Sbjct: 186 TSKFSSASDVWSFGVTLYELF 206
>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 1.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 1, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK1 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK1 is
important in the regulation of many cellular processes
including cytoskeletal dynamics, cell motility, growth,
and proliferation. Although PAK1 has been regarded
mainly as a cytosolic protein, recent reports indicate
that PAK1 also exists in significant amounts in the
nucleus, where it is involved in transcription
modulation and in cell cycle regulatory events. PAK1 is
also involved in transformation and tumorigenesis. Its
overexpression, hyperactivation and increased nuclear
accumulation is correlated to breast cancer invasiveness
and progression. Nuclear accumulation is also linked to
tamoxifen resistance in breast cancer cells.
Length = 296
Score = 99.8 bits (248), Expect = 9e-23
Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 7/227 (3%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
K G+GA G VY A D Q VAI+++ + + + EIL ++ ++PNI+ L
Sbjct: 27 KIGQGASGTVYTAMDVATGQEVAIRQM--NLQQQPKKELIINEILVMRE-NKNPNIVNYL 83
Query: 627 DIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
D Y + +L+VV EY+ L V+ + + + I + + L ++H+ +V+HRD
Sbjct: 84 DSY--LVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRD 141
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
+K NIL+ S+K+ D G ++ + + + T ++ APE+ ++ + Y VDIW
Sbjct: 142 IKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV-VTRKAYGPKVDIW 200
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFK 792
SLG + EM++ +P + + L LI P + +K A F+
Sbjct: 201 SLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFR 247
>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 3.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 3, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK3 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK3 is
highly expressed in the brain. It is implicated in
neuronal plasticity, synapse formation, dendritic spine
morphogenesis, cell cycle progression, neuronal
migration, and apoptosis. Inactivating mutations in the
PAK3 gene cause X-linked non-syndromic mental
retardation, the severity of which depends on the site
of the mutation.
Length = 297
Score = 99.8 bits (248), Expect = 1e-22
Identities = 81/307 (26%), Positives = 141/307 (45%), Gaps = 36/307 (11%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
K G+GA G VY A D Q VAIK++ + + + EIL ++ ++PNI+ L
Sbjct: 26 KIGQGASGTVYTAIDIATGQEVAIKQM--NLQQQPKKELIINEILVMRE-NKNPNIVNYL 82
Query: 627 DIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
D Y + +L+VV EY+ L V+ + + + I + + L ++H+ +V+HRD
Sbjct: 83 DSY--LVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRD 140
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
+K NIL+ S+K+ D G ++ + + + T ++ APE+ ++ + Y VDIW
Sbjct: 141 IKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV-VTRKAYGPKVDIW 199
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKHEREKFNQVVV 805
SLG + EM++ +P + + L LI P + ++ A F R+ N+
Sbjct: 200 SLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVF-----RDFLNRC-- 252
Query: 806 KCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVENDE 865
L+M++D + S E LQ L +SL+ + E
Sbjct: 253 ----------------------LEMDVDRRGSAKELLQHPFLKLAKPLSSLTPLIIAAKE 290
Query: 866 SYVQDSR 872
+ SR
Sbjct: 291 AIKNSSR 297
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 2.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 2, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK2 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK2 plays a
role in pro-apoptotic signaling. It is cleaved and
activated by caspases leading to morphological changes
during apoptosis. PAK2 is also activated in response to
a variety of stresses including DNA damage,
hyperosmolarity, serum starvation, and contact
inhibition, and may play a role in coordinating the
stress response. PAK2 also contributes to cancer cell
invasion through a mechanism distinct from that of PAK1.
Length = 296
Score = 98.6 bits (245), Expect = 2e-22
Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 7/227 (3%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
K G+GA G V+ A D Q VAIK+I + + + EIL +K ++PNI+ L
Sbjct: 26 KIGQGASGTVFTAIDVATGQEVAIKQI--NLQKQPKKELIINEILVMKEL-KNPNIVNFL 82
Query: 627 DIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
D + + +L+VV EY+ L V+ + + + I + + L ++HA +V+HRD
Sbjct: 83 DSF--LVGDELFVVMEYLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRD 140
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
+K N+L+ S+K+ D G ++ + + + T ++ APE+ ++ + Y VDIW
Sbjct: 141 IKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV-VTRKAYGPKVDIW 199
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFK 792
SLG + EM++ +P + + L LI P + +K F+
Sbjct: 200 SLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFR 246
>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal
Byr2-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Byr2-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae
and Cryptococcus neoformans Ste11, and related proteins.
They contain an N-terminal SAM (sterile alpha-motif)
domain, which mediates protein-protein interaction, and
a C-terminal catalytic domain. MAPKKKs phosphorylate and
activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which
in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Fission
yeast Byr2 is regulated by Ras1. It responds to
pheromone signaling and controls mating through the MAPK
pathway. Budding yeast Ste11 functions in MAPK cascades
that regulate mating, high osmolarity glycerol, and
filamentous growth responses.
Length = 267
Score = 97.2 bits (242), Expect = 4e-22
Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 25/232 (10%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI-FEAFRNKTDAQRTY------REILFLKSFQRHPN 621
G G++G VY + ++ + +A+K++ + + ++ REI LK Q H N
Sbjct: 9 GSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQ-HEN 67
Query: 622 IITMLDIYKAVNNKDLYVVFEYMENDLNKVIRDKI--LKDVHIRYIMFQLCNGLSYIHAC 679
I+ L +++ L + EY+ + + ++ +R + Q+ GL+Y+H
Sbjct: 68 IVQYLG--SSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNR 125
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLT------EYIATRWYRAPEILI 733
++HRD+K +NIL+D IKI D G+++ L + + ++ APE+ +
Sbjct: 126 GIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEV-V 184
Query: 734 SNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIV---NLVRPNPP 782
YT DIWSLGC++ EML K FP + QLQ I P P
Sbjct: 185 KQTSYTRKADIWSLGCLVVEMLTGKHPFPDCT---QLQAIFKIGENASPEIP 233
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity
Protein Kinases, MAP kinase kinases 3 and 6. Protein
kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MKK3 and MKK6 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK3 and MKK6 are dual-specificity PKs that
phosphorylate and activate their downstream target, p38
MAPK, on specific threonine and tyrosine residues.
MKK3/6 plays roles in the regulation of cell cycle
progression, cytokine- and stress-induced apoptosis,
oncogenic transformation, and adult tissue regeneration.
In addition, MKK6 plays a critical role in osteoclast
survival in inflammatory disease while MKK3 is
associated with tumor invasion, progression, and poor
patient survival in glioma.
Length = 283
Score = 96.0 bits (239), Expect = 1e-21
Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 31/268 (11%)
Query: 557 EDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSF 616
+DL+ L G+GAYG+V K +A+K+I R ++Q R ++ L
Sbjct: 1 DDLEVIEEL---GRGAYGVVDKMRHVPTGTIMAVKRI----RATVNSQEQKRLLMDLDIS 53
Query: 617 QRHPNIITMLDIYKAV-NNKDLYVVFEYMENDLNKVIRDKILKDVHIR-----YIMFQLC 670
R + + Y A+ D+++ E M+ L+K + K + I I +
Sbjct: 54 MRSVDCPYTVTFYGALFREGDVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIV 113
Query: 671 NGLSYIHA-CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAP 729
L Y+H+ V+HRD+KPSN+LI+++ +K+ D G++ L DS T + Y AP
Sbjct: 114 KALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSV-AKTIDAGCKPYMAP 172
Query: 730 EIL---ISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPH--A 784
E + ++ + Y D+WSLG + E+ + FP S Q + +V P A
Sbjct: 173 ERINPELNQKGYDVKSDVWSLGITMIELATGR--FPYDSWKTPFQQLKQVVEEPSPQLPA 230
Query: 785 DKFYAGF---------KSKHEREKFNQV 803
+KF F K+ ER + ++
Sbjct: 231 EKFSPEFQDFVNKCLKKNYKERPNYPEL 258
>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal
Bck1-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Bck1-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Saccharomyces cerevisiae Bck1 and Schizosaccharomyces
pombe Mkh1, and related proteins. MAPKKKs phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Budding
yeast Bck1 is part of the cell integrity MAPK pathway,
which is activated by stresses and aggressions to the
cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and
the MAPK Slt2 make up the cascade that is important in
the maintenance of cell wall homeostasis. Fission yeast
Mkh1 is involved in MAPK cascades regulating cell
morphology, cell wall integrity, salt resistance, and
filamentous growth in response to stress.
Length = 272
Score = 94.9 bits (236), Expect = 2e-21
Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 22/206 (10%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI----------FEAFRNKTDAQRTYREILFLKSFQR 618
GKG YG VY A + + +A+K++ ++ A R+ EI LK
Sbjct: 10 GKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRS--EIETLKDLD- 66
Query: 619 HPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRD--KILKDVHIRYIMFQLCNGLSY 675
H NI+ L + L + EY+ + +R + + + +R+ Q+ GL+Y
Sbjct: 67 HLNIVQYLGFETT--EEYLSIFLEYVPGGSIGSCLRTYGRFEEQL-VRFFTEQVLEGLAY 123
Query: 676 IHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSD--SKECLTEYIATRWYRAPEILI 733
+H+ ++HRDLK N+L+D KI D G+++ D + + ++ APE++
Sbjct: 124 LHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIH 183
Query: 734 SNRR-YTHHVDIWSLGCILAEMLQSK 758
S + Y+ VDIWSLGC++ EM +
Sbjct: 184 SYSQGYSAKVDIWSLGCVVLEMFAGR 209
>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 5.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 5, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK5 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK5 is mainly expressed in the brain. It
is not required for viability, but together with PAK6,
it is required for normal levels of locomotion and
activity, and for learning and memory. PAK5 cooperates
with Inca (induced in neural crest by AP2) in the
regulation of cell adhesion and cytoskeletal
organization in the embryo and in neural crest cells
during craniofacial development. PAK5 may also play a
role in controlling the signaling of Raf-1, an effector
of Ras, at the mitochondria.
Length = 292
Score = 95.1 bits (236), Expect = 4e-21
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 8/211 (3%)
Query: 551 QLMKDREDLQQQI-NLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYRE 609
QL+ D ++ + + +K G+G+ GIV A +K+ + VA+KK+ R + + + E
Sbjct: 12 QLVVSPGDPREYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKM--DLRKQQRRELLFNE 69
Query: 610 ILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYMEND-LNKVIRDKILKDVHIRYIMFQ 668
++ ++ + H N++ M + Y + +L+VV E++E L ++ + + I +
Sbjct: 70 VVIMRDYH-HENVVDMYNSY--LVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLS 126
Query: 669 LCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRA 728
+ LSY+H V+HRD+K +IL+ IK+ D G +S + T ++ A
Sbjct: 127 VLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMA 186
Query: 729 PEILISNRRYTHHVDIWSLGCILAEMLQSKP 759
PE+ IS Y VDIWSLG ++ EM+ +P
Sbjct: 187 PEV-ISRLPYGTEVDIWSLGIMVIEMIDGEP 216
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 93.9 bits (233), Expect = 5e-21
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 11/199 (5%)
Query: 569 GKGAYGIVYKA-YDKNNKQYVAIKKIFEAFRNKTDAQRTYREI-LFLKSFQRHPNIITML 626
GKG+YG V + + KQYV IKK+ RN + +R E L S +HPNI+
Sbjct: 9 GKGSYGEVSLVRHRTDGKQYV-IKKL--NLRNASRRERKAAEQEAQLLSQLKHPNIVAYR 65
Query: 627 DIYKAVNNKDLYVVFEYMEN-DLNKVIRD---KILKDVHIRYIMFQLCNGLSYIHACKVM 682
+ ++ + LY+V + E DL +++ K+L + + Q+ L Y+H ++
Sbjct: 66 ESWEGEDGL-LYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHIL 124
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
HRDLK N+ + ++ IK+GDLG+AR L + + + I T +Y +PE L SN+ Y +
Sbjct: 125 HRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPE-LFSNKPYNYKS 183
Query: 743 DIWSLGCILAEMLQSKPLF 761
D+W+LGC + EM K F
Sbjct: 184 DVWALGCCVYEMATLKHAF 202
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Srm and
Brk are a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases in general contain an N-terminal SH4 domain with
a myristoylation site, followed by SH3 and SH2 domains,
a tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr; they are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Srm and
Brk however, lack the N-terminal myristylation sites.
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Brk has been found to be overexpressed
in a majority of breast tumors.
Length = 261
Score = 94.0 bits (234), Expect = 5e-21
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 31/231 (13%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
K G G +G V++ KN + VAIK + + Q +E+ LK RH ++I++
Sbjct: 13 KLGSGYFGEVWEGLWKNRVR-VAIKILKSD--DLLKQQDFQKEVQALKRL-RHKHLISLF 68
Query: 627 DIYKAVNNKD--LYVVFEYMEN-DLNKVIRD---KILKDVHIRYIMFQLCNGLSYIHACK 680
AV + +Y++ E ME L +R ++L + + Q+ G++Y+
Sbjct: 69 ----AVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQN 124
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLAR-------SLSDSKECLTEYIATRWYRAPEILI 733
+HRDL NIL+ + K+ D GLAR SD K I +W APE
Sbjct: 125 SIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKK------IPYKW-TAPEA-A 176
Query: 734 SNRRYTHHVDIWSLGCILAEML-QSKPLFPGASTSHQLQLIVNLVR-PNPP 782
S+ ++ D+WS G +L EM + +PG + I R P P
Sbjct: 177 SHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITAGYRMPCPA 227
>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein
Serine/Threonine Kinases, Mitogen-Activated Protein
Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6
(or MAP4K6) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAP4K4/MAP4K6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain. MAP4Ks (or
MAPKKKKs) are involved in MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAP4K4 is also called Nck Interacting kinase
(NIK). It facilitates the activation of the MAPKs,
extracellular signal-regulated kinase (ERK) 1, ERK2, and
c-Jun N-terminal kinase (JNK), by phosphorylating and
activating MEKK1. MAP4K4 plays a role in tumor necrosis
factor (TNF) alpha-induced insulin resistance. MAP4K4
silencing in skeletal muscle cells from type II diabetic
patients restores insulin-mediated glucose uptake.
MAP4K4, through JNK, also plays a broad role in cell
motility, which impacts inflammation, homeostasis, as
well as the invasion and spread of cancer. MAP4K4 is
found to be highly expressed in most tumor cell lines
relative to normal tissue. MAP4K6 (also called MINK for
Misshapen/NIKs-related kinase) is activated after Ras
induction and mediates activation of p38 MAPK. MAP4K6
plays a role in cell cycle arrest, cytoskeleton
organization, cell adhesion, and cell motility.
Length = 282
Score = 93.9 bits (233), Expect = 8e-21
Identities = 71/251 (28%), Positives = 116/251 (46%), Gaps = 25/251 (9%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G G YG VYK Q AIK + + ++ + + EI LK + H NI T
Sbjct: 25 GNGTYGQVYKGRHVKTGQLAAIK-VMDVTEDEEEEIKL--EINMLKKYSHHRNIATYYGA 81
Query: 629 Y----KAVNNKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACK 680
+ ++ L++V E+ DL K + LK+ I YI ++ GL+++HA K
Sbjct: 82 FIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHK 141
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRR--- 737
V+HRD+K N+L+ ++ +K+ D G++ L + +I T ++ APE++ +
Sbjct: 142 VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDA 201
Query: 738 -YTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKHE 796
Y + DIWSLG EM + P H ++ + + R PP KSK
Sbjct: 202 TYDYRSDIWSLGITAIEMAEGAPPL---CDMHPMRALFLIPRNPPPK-------LKSKKW 251
Query: 797 REKFNQVVVKC 807
+KF + C
Sbjct: 252 SKKFIDFIEGC 262
>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), cAMP-dependent protein kinase (PKA) subfamily,
PRKX-like kinases, catalytic (c) subunit. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include human PRKX (X
chromosome-encoded protein kinase), Drosophila DC2, and
similar proteins. PRKX is present in many tissues
including fetal and adult brain, kidney, and lung. The
PRKX gene is located in the Xp22.3 subregion and has a
homolog called PRKY on the Y chromosome. An abnormal
interchange between PRKX aand PRKY leads to the sex
reversal disorder of XX males and XY females. PRKX is
implicated in granulocyte/macrophage lineage
differentiation, renal cell epithelial migration, and
tubular morphogenesis in the developing kidney.
Length = 291
Score = 93.7 bits (233), Expect = 1e-20
Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 12/210 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIK--KIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
G G +G V+ D+ ++ Y A+K I E R K + Q + E LK HP II +
Sbjct: 10 GTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQE-QHVHNEKRVLKEV-SHPFIIRLF 67
Query: 627 DIYKAVNNKDLYVVFEYMEN-DLNKVIRDK-ILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
LY++ EY+ +L +R+ + + ++ L Y+H+ ++++R
Sbjct: 68 WTEHDQRF--LYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYR 125
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
DLKP NIL+DK IK+ D G A+ L D L T Y APE+ I ++ + VD
Sbjct: 126 DLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLC---GTPEYLAPEV-IQSKGHNKAVDW 181
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIV 774
W+LG ++ EML P F + + I+
Sbjct: 182 WALGILIYEMLVGYPPFFDDNPFGIYEKIL 211
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 94.5 bits (235), Expect = 1e-20
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 20/194 (10%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTY--REILFLKSFQRHPNIITML 626
G GA G VYK + + A+K I+ N D R REI L+ HPN++
Sbjct: 83 GSGAGGTVYKVIHRPTGRLYALKVIYG---NHEDTVRRQICREIEILRDVN-HPNVVKCH 138
Query: 627 DIYKAVNNKDLYVVFEYMEN---DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMH 683
D++ +N ++ V+ E+M+ + + ++ L DV Q+ +G++Y+H ++H
Sbjct: 139 DMFD--HNGEIQVLLEFMDGGSLEGTHIADEQFLADV-----ARQILSGIAYLHRRHIVH 191
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEIL---ISNRRYTH 740
RD+KPSN+LI+ + ++KI D G++R L+ + + + T Y +PE + +++ Y
Sbjct: 192 RDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDG 251
Query: 741 HV-DIWSLGCILAE 753
+ DIWSLG + E
Sbjct: 252 YAGDIWSLGVSILE 265
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 92.8 bits (230), Expect = 2e-20
Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 21/224 (9%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G GA+G VYKA +K A K I +++ + + EI L S HPNI+ +LD
Sbjct: 14 GDGAFGKVYKAQNKETGVLAAAKVI--DTKSEEELEDYMVEIDILASCD-HPNIVKLLDA 70
Query: 629 YKAVNNKDLYVVFEYMEN---DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
+ NN L+++ E+ D + ++ L + IR + Q L+Y+H K++HRD
Sbjct: 71 FYYENN--LWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRD 128
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILI----SNRRYTHH 741
LK NIL IK+ D G++ + + + +I T ++ APE+++ +R Y +
Sbjct: 129 LKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYK 188
Query: 742 VDIWSLGCILAEMLQSKPLFPGASTSHQL---QLIVNLVRPNPP 782
D+WSLG L EM Q +P H+L ++++ + + PP
Sbjct: 189 ADVWSLGITLIEMAQIEP------PHHELNPMRVLLKIAKSEPP 226
>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 4.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 4, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK4 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK4 regulates cell morphology and
cytoskeletal organization. It is essential for embryonic
viability and proper neural development. Mice lacking
PAK4 die due to defects in the fetal heart. In addition,
their spinal cord motor neurons showed failure to
differentiate and migrate. PAK4 also plays a role in
cell survival and tumorigenesis. It is overexpressed in
many primary tumors including colon, esophageal, and
mammary tumors. PAK4 has also been implicated in viral
and bacterial infection pathways.
Length = 292
Score = 92.4 bits (229), Expect = 3e-20
Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 7/235 (2%)
Query: 564 NLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNII 623
N +K G+G+ GIV A K++ + VA+KK+ R + + + E++ ++ +Q H N++
Sbjct: 24 NFIKIGEGSTGIVCIATVKSSGKLVAVKKM--DLRKQQRRELLFNEVVIMRDYQ-HENVV 80
Query: 624 TMLDIYKAVNNKDLYVVFEYMEND-LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVM 682
M + Y + +L+VV E++E L ++ + + I + + LS +HA V+
Sbjct: 81 EMYNSY--LVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVI 138
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
HRD+K +IL+ +K+ D G +S + T ++ APE LIS Y V
Sbjct: 139 HRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPE-LISRLPYGPEV 197
Query: 743 DIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKHER 797
DIWSLG ++ EM+ +P + +++I + + P + K K +R
Sbjct: 198 DIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDR 252
>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIA myosin.
Serine/threonine kinases (STKs), class IIIA myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
In photoreceptor cells, they may also function as cargo
carriers during light-dependent translocation of
proteins such as transducin and arrestin. Class IIIA
myosin is highly expressed in retina and in inner ear
hair cells. It is localized to the distal ends of
actin-bundled structures. Mutations in human myosin IIIA
are responsible for progressive nonsyndromic hearing
loss. Human myosin IIIA possesses ATPase and kinase
activities, and the ability to move actin filaments in a
motility assay. It may function as a cellular
transporter capable of moving along actin bundles in
sensory cells.
Length = 286
Score = 90.5 bits (224), Expect = 1e-19
Identities = 72/267 (26%), Positives = 125/267 (46%), Gaps = 29/267 (10%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
GKG YG V+K +K N A+K + + + Y LK+ HPN++ +
Sbjct: 27 GKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYN---ILKALSDHPNVVKFYGM 83
Query: 629 Y--KAVNNKD-LYVVFEYME----NDLNK--VIRDKILKDVHIRYIMFQLCNGLSYIHAC 679
Y K V N D L++V E DL K + R + +++ I YI+ + GL ++H
Sbjct: 84 YYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN 143
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRR-- 737
K +HRD+K +NIL+ +K+ D G++ L+ ++ + T ++ APE++ ++
Sbjct: 144 KTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLD 203
Query: 738 --YTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP--HADKFYAGFKS 793
Y D+WSLG E+ P P A H ++ + + R PP H + ++
Sbjct: 204 STYDARCDVWSLGITAIELGDGDP--PLADL-HPMRALFKIPRNPPPTLHQPELWSN--- 257
Query: 794 KHEREKFNQVVVKCQKELQELQSQVVE 820
+FN + KC + E + V +
Sbjct: 258 -----EFNDFIRKCLTKDYEKRPTVSD 279
>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 1.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 1 (TAO1) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO1 is sometimes referred to as prostate-derived
sterile 20-like kinase 2 (PSK2). TAO1 activates the p38
MAPK through direct interaction with and activation of
MEK3. TAO1 is highly expressed in the brain and may play
a role in neuronal apoptosis. TAO1 interacts with the
checkpoint proteins BubR1 and Mad2, and plays an
important role in regulating mitotic progression, which
is required for both chromosome congression and
checkpoint-induced anaphase delay. TAO1 may play a role
in protecting genomic stability.
Length = 317
Score = 90.9 bits (225), Expect = 1e-19
Identities = 63/210 (30%), Positives = 109/210 (51%), Gaps = 13/210 (6%)
Query: 556 REDLQQQINLLKE-GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDA-QRTYREILFL 613
+ED ++ L+E G G++G VY A D + VAIKK+ + + + Q +E+ FL
Sbjct: 20 KEDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFL 79
Query: 614 KSFQRHPNIITMLDIYKAVNNKDLYVVFEYMENDLNKV--IRDKILKDVHIRYIMFQLCN 671
+ + HPN I Y + ++V EY + + + K L++V I I
Sbjct: 80 QRIK-HPNSIEYKGCY--LREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQ 136
Query: 672 GLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEI 731
GL+Y+H+ ++HRD+K NIL+ + +K+ D G A S + ++ T ++ APE+
Sbjct: 137 GLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA----NSFVGTPYWMAPEV 192
Query: 732 LIS--NRRYTHHVDIWSLGCILAEMLQSKP 759
+++ +Y VD+WSLG E+ + KP
Sbjct: 193 ILAMDEGQYDGKVDVWSLGITCIELAERKP 222
>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase
kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain,
functionally uncharacterized subgroup 1. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MEKK3-like subfamily is
composed of MEKK3, MEKK2, and related proteins, all
containing an N-terminal PB1 domain, which mediates
oligomerization, and a C-terminal catalytic domain.
MEKK2 and MEKK3 are mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks),
proteins that phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK2 and MEKK3 activate MEK5
(also called MKK5), which activates extracellular
signal-regulated kinase 5 (ERK5). The ERK5 cascade plays
roles in promoting cell proliferation, differentiation,
neuronal survival, and neuroprotection. MEKK3 plays an
essential role in embryonic angiogenesis and early heart
development. MEKK2 and MEKK3 can also activate the
MAPKs, c-Jun N-terminal kinase (JNK) and p38, through
their respective MAPKKs.
Length = 264
Score = 89.3 bits (221), Expect = 2e-19
Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 24/206 (11%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI-FEAFRNKTDAQRTYREI------LFLKSFQRHPN 621
G+GA+G VY YD + + +A+K++ F+ D+Q T +E+ + L RH
Sbjct: 11 GRGAFGEVYLCYDADTGRELAVKQVPFDP-----DSQETSKEVNALECEIQLLKNLRHDR 65
Query: 622 IITMLDIYKAVNNKDLYVVFEYMENDLNKVIRDKI-----LKDVHIRYIMFQLCNGLSYI 676
I+ + K L + EYM I+D++ L + R Q+ G+SY+
Sbjct: 66 IVQYYGCLRDPEEKKLSIFVEYMPGG---SIKDQLKAYGALTENVTRRYTRQILQGVSYL 122
Query: 677 HACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSD---SKECLTEYIATRWYRAPEILI 733
H+ ++HRD+K +NIL D + ++K+GD G ++ + S + T ++ +PE+ I
Sbjct: 123 HSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEV-I 181
Query: 734 SNRRYTHHVDIWSLGCILAEMLQSKP 759
S Y D+WS+ C + EML KP
Sbjct: 182 SGEGYGRKADVWSVACTVVEMLTEKP 207
>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP
kinase kinase 4 (MKK4) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK4 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK4 is a dual-specificity PK that
phosphorylates and activates the downstream targets,
c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific
threonine and tyrosine residues. JNK and p38 are
collectively known as stress-activated MAPKs, as they
are activated in response to a variety of environmental
stresses and pro-inflammatory cytokines. Their
activation is associated with the induction of cell
death. Mice deficient in MKK4 die during embryogenesis
and display anemia, severe liver hemorrhage, and
abnormal hepatogenesis. MKK4 may also play roles in the
immune system and in cardiac hypertrophy. It plays a
major role in cancer as a tumor and metastasis
suppressor. Under certain conditions, MKK4 is
pro-oncogenic.
Length = 288
Score = 90.1 bits (224), Expect = 2e-19
Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 21/232 (9%)
Query: 556 REDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKS 615
EDL+ +L + G+GA+G V K K + +A+K+I + ++ + +R ++ +
Sbjct: 3 AEDLK---DLGEIGRGAFGTVNKMLHKPSGTIMAVKRI-RSTVDEKEQKRLLMDLDVVMR 58
Query: 616 FQRHPNIITMLDIYKAV-NNKDLYVVFEYMENDLNK-------VIRDKILKDVHIRYIMF 667
P I+ Y A+ D ++ E M+ L+K V++ I +++ + I
Sbjct: 59 SSDCPYIVKF---YGALFREGDCWICMELMDISLDKFYKYVYEVLKSVIPEEI-LGKIAV 114
Query: 668 QLCNGLSYI-HACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWY 726
L+Y+ K++HRD+KPSNIL+D++ +IK+ D G++ L DS T R Y
Sbjct: 115 ATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSI-AKTRDAGCRPY 173
Query: 727 RAPEILISNRR--YTHHVDIWSLGCILAEMLQSKPLFPG-ASTSHQLQLIVN 775
APE + + R Y D+WSLG L E+ K +P S QL +V
Sbjct: 174 MAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVK 225
>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 2.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 2 (TAO2) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Human TAO2 is also known as prostate-derived Ste20-like
kinase (PSK) and was identified in a screen for
overexpressed RNAs in prostate cancer. TAO2 activates
both p38 and c-Jun N-terminal kinase (JNK), by
phosphorylating and activating the respective MAP/ERK
kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6
and MKK4/MKK7. TAO2 contains a long C-terminal extension
with autoinhibitory segments. It is activated by the
release of this inhibition and the phosphorylation of
its activation loop serine. TAO2 functions as a
regulator of actin cytoskeletal and microtubule
organization. In addition, it regulates the transforming
growth factor-activated kinase 1 (TAK1), which is a
MAPKKK that plays an essential role in the signaling
pathways of tumor necrosis factor (TNF), interleukin 1
(IL-1), and Toll-like receptor (TLR).
Length = 308
Score = 90.1 bits (223), Expect = 2e-19
Identities = 66/211 (31%), Positives = 115/211 (54%), Gaps = 15/211 (7%)
Query: 556 REDLQQQINLLKE-GKGAYGIVYKAYDKNNKQYVAIKKI-FEAFRNKTDAQRTYREILFL 613
++D ++ + L+E G G++G VY A D N + VAIKK+ + ++ Q +E+ FL
Sbjct: 10 KDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFL 69
Query: 614 KSFQRHPNIITMLDIYKAVNNKDLYVVFEYM---ENDLNKVIRDKILKDVHIRYIMFQLC 670
+ RHPN I Y + ++V EY +DL +V K L++V I +
Sbjct: 70 QKL-RHPNTIQYRGCY--LREHTAWLVMEYCLGSASDLLEV-HKKPLQEVEIAAVTHGAL 125
Query: 671 NGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPE 730
GL+Y+H+ ++HRD+K NIL+ + +K+GD G A ++ + ++ T ++ APE
Sbjct: 126 QGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA----NXFVGTPYWMAPE 181
Query: 731 ILIS--NRRYTHHVDIWSLGCILAEMLQSKP 759
++++ +Y VD+WSLG E+ + KP
Sbjct: 182 VILAMDEGQYDGKVDVWSLGITCIELAERKP 212
>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase
adapter protein. Protein Kinase family, STE20-related
kinase adapter protein (STRAD) subfamily, pseudokinase
domain. The STRAD subfamily is part of a larger
superfamily that includes the catalytic domains of
serine/threonine kinases (STKs), protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
pseudokinase domain shows similarity to protein kinases
but lacks crucial residues for catalytic activity. STRAD
forms a complex with the scaffolding protein MO25, and
the STK, LKB1, resulting in the activation of the
kinase. In the complex, LKB1 phosphorylates and
activates adenosine monophosphate-activated protein
kinases (AMPKs), which regulate cell energy metabolism
and cell polarity. LKB1 is a tumor suppressor linked to
the rare inherited disease, Peutz-Jeghers syndrome,
which is characterized by a predisposition to benign
polyps and hyperpigmentation of the buccal mucosa. There
are two forms of STRAD, alpha and beta, that complex
with LKB1 and MO25. The structure of STRAD-alpha is
available and shows that this protein binds ATP, has an
ordered activation loop, and adopts a closed
conformation typical of fully active protein kinases. It
does not possess activity due to nonconservative
substitutions of essential catalytic residues. ATP
binding enhances the affinity of STRAD for MO25. The
conformation of STRAD-alpha stabilized through ATP and
MO25 may be needed to activate LKB1.
Length = 314
Score = 90.1 bits (224), Expect = 2e-19
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 17/194 (8%)
Query: 574 GIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDIYKAVN 633
IV+ A K VA+KKI +K D + +EI+ + Q HPNI+ + + +
Sbjct: 14 MIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQ-HPNILPYVTSF--IV 70
Query: 634 NKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPS 689
+ +LYVV M DL K + L ++ I +I+ + N L YIH+ +HR +K S
Sbjct: 71 DSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKAS 130
Query: 690 NILIDKSCSIKIGDLGLARSLSDSKE------CLTEYIAT--RWYRAPEILISNRR-YTH 740
+IL+ + + L + S+ + + W +PE+L N + Y
Sbjct: 131 HILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWL-SPEVLQQNLQGYNE 189
Query: 741 HVDIWSLGCILAEM 754
DI+S+G E+
Sbjct: 190 KSDIYSVGITACEL 203
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase
4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. YSK4 is a
putative MAPKKK, whose mammalian gene has been isolated.
MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals.
Length = 265
Score = 89.2 bits (221), Expect = 2e-19
Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 13/231 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYR----EILFLKSFQRHPNIIT 624
GKGAYG VY N Q +A+K++ N A++ Y E+ LKS +H NI+
Sbjct: 9 GKGAYGTVYCGL-TNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSL-KHVNIVQ 66
Query: 625 MLDIYKAVNNKDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
L N +++ F + + + R L + Q+ +G++Y+H V+HR
Sbjct: 67 YLGTCLDDNTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHR 126
Query: 685 DLKPSNILIDKSCSIKIGDLGLAR-----SLSDSK-ECLTEYIATRWYRAPEILISNRRY 738
D+K +N+++ + IK+ D G AR L + L T ++ APE+ I+ Y
Sbjct: 127 DIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEV-INESGY 185
Query: 739 THHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYA 789
DIWS+GC + EM KP + I P D F A
Sbjct: 186 GRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSA 236
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 3.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK3 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. In addition, MEKK3 is
involved in interleukin-1 receptor and Toll-like
receptor 4 signaling. It is also a specific regulator of
the proinflammatory cytokines IL-6 and GM-CSF in some
immune cells. MEKK3 also regulates calcineurin, which
plays a critical role in T cell activation, apoptosis,
skeletal myocyte differentiation, and cardiac
hypertrophy.
Length = 266
Score = 88.6 bits (219), Expect = 3e-19
Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 16/202 (7%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI-FEAFRNKTDAQRTYRE--ILFLKSFQRHPNIITM 625
G+GA+G VY YD + + +A K++ F+ +T + + E I LK+ +H I+
Sbjct: 11 GQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNL-QHERIVQY 69
Query: 626 LDIYKAVNNKDLYVVFEYMENDLNKVIRDKI-----LKDVHIRYIMFQLCNGLSYIHACK 680
+ K L + EYM ++D++ L + R Q+ G+SY+H+
Sbjct: 70 YGCLRDRAEKTLTIFMEYMPGG---SVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNM 126
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLARSLSD---SKECLTEYIATRWYRAPEILISNRR 737
++HRD+K +NIL D + ++K+GD G ++ L S + T ++ +PE+ IS
Sbjct: 127 IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEV-ISGEG 185
Query: 738 YTHHVDIWSLGCILAEMLQSKP 759
Y D+WSLGC + EML KP
Sbjct: 186 YGRKADVWSLGCTVVEMLTEKP 207
>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein
Serine/Threonine Kinase, STK25 or Yeast
Sps1/Ste20-related kinase 1. Serine/threonine kinases
(STKs), STK25 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The STK25 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. STK25 is also called Ste20/oxidant stress
response kinase 1 (SOK1) or yeast Sps1/Ste20-related
kinase 1 (YSK1). STK25 is localized in the Golgi
apparatus through its interaction with the Golgi matrix
protein GM130. It may play a role in the regulation of
cell migration and polarization. STK25 binds and
phosphorylates CCM3 (cerebral cavernous malformation 3),
also called PCD10 (programmed cell death 10), and may
play a role in apoptosis. Human STK25 is a candidate
gene responsible for pseudopseudohypoparathyroidism
(PPHP), a disease that shares features with the Albright
hereditary osteodystrophy (AHO) phenotype.
Length = 277
Score = 88.6 bits (219), Expect = 4e-19
Identities = 60/215 (27%), Positives = 112/215 (52%), Gaps = 9/215 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
GKG++G VYK D K+ VAIK I + + + + +EI L P I
Sbjct: 13 GKGSFGEVYKGIDNRTKEVVAIK-IIDLEEAEDEIEDIQQEITVLSQCDS-PYITRYYGS 70
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRDLK 687
Y + L+++ EY+ +++ L++ +I I+ ++ GL Y+H+ + +HRD+K
Sbjct: 71 Y--LKGTKLWIIMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDIK 128
Query: 688 PSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIWSL 747
+N+L+ + +K+ D G+A L+D++ ++ T ++ APE+ I Y DIWSL
Sbjct: 129 AANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEV-IKQSAYDFKADIWSL 187
Query: 748 GCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP 782
G E+ + +P S H ++++ + + +PP
Sbjct: 188 GITAIELAKGEPPN---SDLHPMRVLFLIPKNSPP 219
>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 2.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2
(MEKK2) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK2 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK2 also activates ERK1/2, c-Jun N-terminal kinase
(JNK) and p38 through their respective MAPKKs MEK1/2,
JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays
roles in T cell receptor signaling, immune synapse
formation, cytokine gene expression, as well as in EGF
and FGF receptor signaling.
Length = 265
Score = 88.2 bits (218), Expect = 5e-19
Identities = 70/255 (27%), Positives = 117/255 (45%), Gaps = 30/255 (11%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF---EAFRNKTDAQRTYREILFLKSFQRHPNIITM 625
G+GA+G VY YD + + +A+K++ E+ + EI LK+ H I+
Sbjct: 11 GQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLL-HERIVQY 69
Query: 626 LDIYKAVNNKDLYVVFEYMENDLNKVIRDKI-----LKDVHIRYIMFQLCNGLSYIHACK 680
+ + L + E+M I+D++ L + R Q+ G+SY+H+
Sbjct: 70 YGCLRDPMERTLSIFMEHMPGG---SIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNM 126
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLARSLSD---SKECLTEYIATRWYRAPEILISNRR 737
++HRD+K +NIL D ++K+GD G ++ L S + T ++ +PE+ IS
Sbjct: 127 IVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEV-ISGEG 185
Query: 738 YTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPN----PPHADKFYAGFKS 793
Y DIWS+GC + EML KP P A + +P PPH S
Sbjct: 186 YGRKADIWSVGCTVVEMLTEKP--PWAEFEAMAAIFKIATQPTNPVLPPHV--------S 235
Query: 794 KHEREKFNQVVVKCQ 808
H R+ ++ V+ +
Sbjct: 236 DHCRDFLKRIFVEAK 250
>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP
kinase kinase 5 (MKK5) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK5 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK5, also referred to as MEK5, is a
dual-specificity PK that phosphorylates its downstream
target, extracellular signal-regulated kinase 5 (ERK5),
on specific threonine and tyrosine residues. MKK5 is
activated by MEKK2 and MEKK3 in response to mitogenic
and stress stimuli. The ERK5 cascade promotes cell
proliferation, differentiation, neuronal survival, and
neuroprotection. This cascade plays an essential role in
heart development. Mice deficient in either ERK5 or MKK5
die around embryonic day 10 due to cardiovascular
defects including underdevelopment of the myocardium. In
addition, MKK5 is associated with metastasis and
unfavorable prognosis in prostate cancer.
Length = 279
Score = 88.4 bits (219), Expect = 5e-19
Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 32/238 (13%)
Query: 557 EDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQR---TYREILFL 613
+D+Q Q L G G G VYKAY ++ +A+K I + Q+ + EIL+
Sbjct: 1 QDIQYQEIL---GHGNGGTVYKAYHLLTRRILAVKVI--PLDITVELQKQIMSELEILYK 55
Query: 614 KSFQRHPNIITMLDIYKA--VNNKDLYVVFEYMEN---DLNKVIRDKILKDVHIRYIMFQ 668
P II Y A V N+ + + E+M+ D+ + I + +L + + +
Sbjct: 56 CD---SPYIIGF---YGAFFVENR-ISICTEFMDGGSLDVYRKIPEHVLGRIAVAVV--- 105
Query: 669 LCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRA 728
GL+Y+ + K++HRD+KPSN+L++ +K+ D G++ L +S Y+ T Y A
Sbjct: 106 --KGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNS--IAKTYVGTNAYMA 161
Query: 729 PEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSH----QLQLIVNLVRPNPP 782
PE IS +Y H D+WSLG E+ + +P + LQL+ +V +PP
Sbjct: 162 PE-RISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPP 218
>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Traf2- and Nck-interacting
kinase. Serine/threonine kinases (STKs), Traf2- and
Nck-interacting kinase (TNIK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The TNIK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to mitogen-activated protein kinase (MAPK),
kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks
participate in some MAPK signaling pathways by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). TNIK is an effector of Rap2, a small GTP-binding
protein from the Ras family. TNIK specifically activates
the c-Jun N-terminal kinase (JNK) pathway and plays a
role in regulating the actin cytoskeleton.
Length = 272
Score = 88.2 bits (218), Expect = 6e-19
Identities = 70/251 (27%), Positives = 112/251 (44%), Gaps = 25/251 (9%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G G YG VYK Q AIK + + + + +EI LK + H NI T
Sbjct: 15 GNGTYGQVYKGRHVKTGQLAAIK-VMDV--TGDEEEEIKQEINMLKKYSHHRNIATYYGA 71
Query: 629 YKAVN----NKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACK 680
+ N + L++V E+ DL K + LK+ I YI ++ GLS++H K
Sbjct: 72 FIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK 131
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRR--- 737
V+HRD+K N+L+ ++ +K+ D G++ L + +I T ++ APE++ +
Sbjct: 132 VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDA 191
Query: 738 -YTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKHE 796
Y D+WSLG EM + P H ++ + + R P KSK
Sbjct: 192 TYDFKSDLWSLGITAIEMAEGAPPL---CDMHPMRALFLIPRNPAPR-------LKSKKW 241
Query: 797 REKFNQVVVKC 807
+KF + C
Sbjct: 242 SKKFQSFIESC 252
>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 6.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 6, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK6 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK6 may play a role in stress responses
through its activation by the mitogen-activated protein
kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6
is highly expressed in the brain. It is not required for
viability, but together with PAK5, it is required for
normal levels of locomotion and activity, and for
learning and memory. Increased expression of PAK6 is
found in primary and metastatic prostate cancer. PAK6
may play a role in the regulation of motility.
Length = 297
Score = 88.5 bits (219), Expect = 6e-19
Identities = 56/197 (28%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Query: 564 NLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNII 623
N +K G+G+ GIV A +K++ + VA+K + R + + + E++ ++ +Q H N++
Sbjct: 25 NYIKIGEGSTGIVCIAREKHSGRQVAVKMM--DLRKQQRRELLFNEVVIMRDYQ-HQNVV 81
Query: 624 TMLDIYKAVNNKDLYVVFEYMEND-LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVM 682
M Y + ++L+V+ E+++ L ++ L + I + + L Y+H+ V+
Sbjct: 82 EMYKSY--LVGEELWVLMEFLQGGALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGVI 139
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
HRD+K +IL+ +K+ D G +S + T ++ APE+ IS Y V
Sbjct: 140 HRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEV-ISRTPYGTEV 198
Query: 743 DIWSLGCILAEMLQSKP 759
DIWSLG ++ EM+ +P
Sbjct: 199 DIWSLGIMVIEMVDGEP 215
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals,
there are three PKN isoforms from different genes
(designated PKN-alpha, beta, and gamma), which show
different enzymatic properties, tissue distribution, and
varied functions. PKN can be activated by the small
GTPase Rho, and by fatty acids such as arachidonic and
linoleic acids. It is involved in many biological
processes including cytokeletal regulation, cell
adhesion, vesicle transport, glucose transport,
regulation of meiotic maturation and embryonic cell
cycles, signaling to the nucleus, and tumorigenesis.
Length = 324
Score = 89.0 bits (221), Expect = 7e-19
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 7/211 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAF---RNKTDAQRTYREILFLKSFQRHPNIITM 625
G+G +G V A K + AIK + + R++ ++ + I + +RHP ++ +
Sbjct: 8 GRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNL 67
Query: 626 LDIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
++ + V EY DL I + + + + GL Y+H K+++R
Sbjct: 68 FACFQT--EDHVCFVMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHENKIVYR 125
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
DLK N+L+D +KI D GL + + + + T + APE+L + YT VD
Sbjct: 126 DLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVL-TETSYTRAVDW 184
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIVN 775
W LG ++ EML + FPG IVN
Sbjct: 185 WGLGVLIYEMLVGESPFPGDDEEEVFDSIVN 215
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 11. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 11 (Nek11)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek11 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek11 is involved, through direct
phosphorylation, in regulating the degradation of Cdc25A
(Cell Division Cycle 25 homolog A), which plays a role
in cell cycle progression and in activating cyclin
dependent kinases. Nek11 is activated by CHK1
(CHeckpoint Kinase 1) and may be involved in the G2/M
checkpoint. Nek11 may also play a role in the S-phase
checkpoint as well as in DNA replication and genotoxic
stress responses.
Length = 260
Score = 86.5 bits (214), Expect = 1e-18
Identities = 65/207 (31%), Positives = 100/207 (48%), Gaps = 17/207 (8%)
Query: 556 REDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREIL--FL 613
R LQQ++ GKG++G VY DK +K + E + + T + L
Sbjct: 1 RYILQQRL-----GKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQL 55
Query: 614 KSFQRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRD-----KILKDVHIRYIMF 667
S HP I+ + + ++ EY E DL+ + + K L + +
Sbjct: 56 LSKLDHPAIVKFHASF--LERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFI 113
Query: 668 QLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYR 727
QL G+ Y+H +++HRDLK NI + + +KIGD G++R L S + T + T +Y
Sbjct: 114 QLLLGVHYMHQRRILHRDLKAKNIFLKNNL-LKIGDFGVSRLLMGSCDLATTFTGTPYYM 172
Query: 728 APEILISNRRYTHHVDIWSLGCILAEM 754
+PE L ++ Y DIWSLGCIL EM
Sbjct: 173 SPEAL-KHQGYDSKSDIWSLGCILYEM 198
>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine
Kinases, Tropomyosin Related Kinases. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase (Trk)
subfamily; catalytic (c) domain. The Trk subfamily
consists of TrkA, TrkB, TrkC, and similar proteins. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Trk
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular region with arrays of
leucine-rich motifs flanked by two cysteine-rich
clusters followed by two immunoglobulin-like domains, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, the nerve growth
factor (NGF) family of neutrotrophins, leads to Trk
receptor oligomerization and activation of the catalytic
domain. Trk receptors are mainly expressed in the
peripheral and central nervous systems. They play
important roles in cell fate determination, neuronal
survival and differentiation, as well as in the
regulation of synaptic plasticity. Altered expression of
Trk receptors is associated with many human diseases.
Length = 280
Score = 87.1 bits (216), Expect = 1e-18
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 43/225 (19%)
Query: 561 QQINLLKE-GKGAYGIVYKA-----YDKNNKQYVAIKKIFEAFRNKTDAQRTY-REILFL 613
I L +E G+GA+G V+ +N+K+ VA+K + E N DA++ + RE L
Sbjct: 5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASN--DARKDFEREAELL 62
Query: 614 KSFQRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIR---------------DKIL 657
+FQ H NI+ + +VFEYME+ DLNK +R L
Sbjct: 63 TNFQ-HENIVKFYGV--CTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGEL 119
Query: 658 KDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECL 717
+ I Q+ +G+ Y+ + +HRDL N L+ +KIGD G++R +
Sbjct: 120 TLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYT----- 174
Query: 718 TEY--------IATRWYRAPEILISNRRYTHHVDIWSLGCILAEM 754
T+Y + RW PE ++ R++T D+WS G +L E+
Sbjct: 175 TDYYRVGGHTMLPIRWM-PPESIMY-RKFTTESDVWSFGVVLWEI 217
>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SGK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
isoforms of SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGKs are
activated by insulin and growth factors via
phosphoinositide 3-kinase and PDK1. They activate ion
channels, ion carriers, and the Na-K-ATPase, as well as
regulate the activity of enzymes and transcription
factors. SGKs play important roles in transport, hormone
release, neuroexcitability, cell proliferation, and
apoptosis.
Length = 323
Score = 87.5 bits (217), Expect = 2e-18
Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 6/210 (2%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG++G V A K + ++ A+K + +A K + + E L +HP ++ +
Sbjct: 4 GKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLH- 62
Query: 628 IYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
Y LY V +Y+ + R++ + R+ ++ + L Y+H+ +++RD
Sbjct: 63 -YSFQTADKLYFVLDYVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSLNIIYRD 121
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LKP NIL+D + + D GL + + + + + T Y APE+L + Y VD W
Sbjct: 122 LKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVL-RKQPYDRTVDWW 180
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIVN 775
LG +L EML P F T+ I+N
Sbjct: 181 CLGAVLYEMLYGLPPFYSRDTAEMYDNILN 210
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as
a regulator of polo-like kinase 1 (Plk1), a protein
which is overexpressed in multiple tumor types.
Length = 292
Score = 87.0 bits (215), Expect = 2e-18
Identities = 63/224 (28%), Positives = 111/224 (49%), Gaps = 21/224 (9%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G GA+G VYKA +K A K I +++ + + EI L + HP I+ +L
Sbjct: 21 GDGAFGKVYKAKNKETGALAAAKVI--ETKSEEELEDYMVEIEILATCN-HPYIVKLLGA 77
Query: 629 YKAVNNKDLYVVFEYMEN---DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
+ + L+++ E+ D + D+ L + I+ I Q+ L Y+H+ K++HRD
Sbjct: 78 F--YWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRD 135
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEIL----ISNRRYTHH 741
LK N+L+ IK+ D G++ + + +I T ++ APE++ + + Y +
Sbjct: 136 LKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYK 195
Query: 742 VDIWSLGCILAEMLQSKPLFPGASTSHQL---QLIVNLVRPNPP 782
DIWSLG L EM Q +P H+L ++++ + + PP
Sbjct: 196 ADIWSLGITLIEMAQIEP------PHHELNPMRVLLKIAKSEPP 233
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for
activity, while atypical PKCs only require PS. PKCs
phosphorylate and modify the activities of a wide
variety of cellular proteins including receptors,
enzymes, cytoskeletal proteins, transcription factors,
and other kinases. They play a central role in signal
transduction pathways that regulate cell migration and
polarity, proliferation, differentiation, and apoptosis.
Also included in this subfamily are the PKC-like
proteins, called PKNs.
Length = 318
Score = 87.0 bits (216), Expect = 2e-18
Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 22/218 (10%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTD---AQRTYREILFLKSFQRHPNIITM 625
GKG++G V A K + A+K + + + D T + +L L +HP + +
Sbjct: 4 GKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAG--KHPFLTQL 61
Query: 626 LDIYKAVNNKDLYVVFEYMEN-DLNKVI-RDKILKDVHIRYIMFQLCNGLSYIHACKVMH 683
++ + L+ V EY+ DL I R + R+ ++ GL ++H +++
Sbjct: 62 HSCFQTKDR--LFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGIIY 119
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRW------YRAPEILISNRR 737
RDLK N+L+D IKI D G+ KE + + T Y APEIL S +
Sbjct: 120 RDLKLDNVLLDSEGHIKIADFGM------CKEGILGGVTTSTFCGTPDYIAPEIL-SYQP 172
Query: 738 YTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVN 775
Y VD W+LG +L EML + F G Q I+
Sbjct: 173 YGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILE 210
>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 3.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 3 (TAO3) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO3 is also known as JIK (JNK inhibitory kinase) or KFC
(kinase from chicken). It specifically activates c-Jun
N-terminal kinase (JNK), presumably by phosphorylating
and activating MKK4/MKK7. In Saccharomyces cerevisiae,
TAO3 is a component of the RAM (regulation of Ace2p
activity and cellular morphogenesis) signaling pathway.
TAO3 is upregulated in retinal ganglion cells after
axotomy, and may play a role in apoptosis.
Length = 313
Score = 87.0 bits (215), Expect = 3e-18
Identities = 61/203 (30%), Positives = 106/203 (52%), Gaps = 14/203 (6%)
Query: 563 INLLKEGKGAYGIVYKAYDKNNKQYVAIKKI-FEAFRNKTDAQRTYREILFLKSFQRHPN 621
+ L + G G++G VY A + + + VA+KK+ + + Q +E+ FL+ +HPN
Sbjct: 24 VGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQL-KHPN 82
Query: 622 IITMLDIYKAVNNKDLYVVFEYM---ENDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHA 678
I Y + ++V EY +DL +V K L++V I I GL+Y+H+
Sbjct: 83 TIEYKGCY--LKEHTAWLVMEYCLGSASDLLEV-HKKPLQEVEIAAITHGALQGLAYLHS 139
Query: 679 CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILIS--NR 736
++HRD+K NIL+ + +K+ D G A S + ++ T ++ APE++++
Sbjct: 140 HNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPA----NSFVGTPYWMAPEVILAMDEG 195
Query: 737 RYTHHVDIWSLGCILAEMLQSKP 759
+Y VD+WSLG E+ + KP
Sbjct: 196 QYDGKVDVWSLGITCIELAERKP 218
>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit;
Provisional.
Length = 329
Score = 86.8 bits (215), Expect = 4e-18
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIK--KIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
G G++G V A K +Y AIK K E + K Q +E L HP I+ M+
Sbjct: 27 GTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMK-QVQHVAQEKSILMELS-HPFIVNMM 84
Query: 627 DIYKAVNNKDLYVVFEY-MENDLNKVIRD--KILKDVHIRYIMFQLCNGLSYIHACKVMH 683
++ + +Y + E+ + +L +R + DV ++ +L Y+H+ +++
Sbjct: 85 CSFQ--DENRVYFLLEFVVGGELFTHLRKAGRFPNDVA-KFYHAELVLAFEYLHSKDIIY 141
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVD 743
RDLKP N+L+D +K+ D G A+ + D L T Y APE+ I ++ + VD
Sbjct: 142 RDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFTLC---GTPEYLAPEV-IQSKGHGKAVD 197
Query: 744 IWSLGCILAEMLQSKPLF 761
W++G +L E + P F
Sbjct: 198 WWTMGVLLYEFIAGYPPF 215
>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 3. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 3 (MST3) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST3
phosphorylates the STK NDR and may play a role in cell
cycle progression and cell morphology. It may also
regulate paxillin and consequently, cell migration. MST3
is present in human placenta, where it plays an
essential role in the oxidative stress-induced apoptosis
of trophoblasts in normal spontaneous delivery.
Dysregulation of trophoblast apoptosis may result in
pregnancy complications such as preeclampsia and
intrauterine growth retardation.
Length = 277
Score = 85.5 bits (211), Expect = 4e-18
Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 9/226 (3%)
Query: 565 LLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
L K GKG++G V+K D ++ VAIK I + + + + +EI L P +
Sbjct: 9 LEKIGKGSFGEVFKGIDNRTQKVVAIK-IIDLEEAEDEIEDIQQEITVLSQCDS-PYVTK 66
Query: 625 MLDIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMH 683
Y + + L+++ EY+ ++ L + I I+ ++ GL Y+H+ K +H
Sbjct: 67 YYGSY--LKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIH 124
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVD 743
RD+K +N+L+ + +K+ D G+A L+D++ ++ T ++ APE+ I Y D
Sbjct: 125 RDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEV-IKQSAYDSKAD 183
Query: 744 IWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYA 789
IWSLG E+ + + P S H ++++ + + NPP + Y+
Sbjct: 184 IWSLGITAIELAKGE---PPHSELHPMKVLFLIPKNNPPTLEGNYS 226
>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIB myosin.
Serine/threonine kinases (STKs), class IIIB myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
They may also function as cargo carriers during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. Class IIIB
myosin is expressed highly in retina. It is also present
in the brain and testis. The human class IIIB myosin
gene maps to a region that overlaps the locus for
Bardet-Biedl syndrome, which is characterized by
dysmorphic extremities, retinal dystrophy, obesity, male
hypogenitalism, and renal abnormalities.
Length = 291
Score = 85.8 bits (212), Expect = 4e-18
Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 24/240 (10%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
GKG YG VYK +K + A+K I + + + IL +S HPN++ +
Sbjct: 31 GKGTYGKVYKVTNKKDGSLAAVK-ILDPISDVDEEIEAEYNIL--QSLPNHPNVVKFYGM 87
Query: 629 -YKA--VNNKDLYVVFEYME----NDLNK--VIRDKILKDVHIRYIMFQLCNGLSYIHAC 679
YKA + L++V E +L K +I + L + I YI++ GL ++H
Sbjct: 88 FYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN 147
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYT 739
+++HRD+K +NIL+ +K+ D G++ L+ ++ + T ++ APE++ ++Y
Sbjct: 148 RIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYD 207
Query: 740 H----HVDIWSLGCILAEMLQSK-PLFPGASTSHQLQLIVNLVRPNPP---HADKFYAGF 791
+ D+WSLG E+ PLF H ++ + + R PP H +K+ F
Sbjct: 208 YSYDARCDVWSLGITAIELGDGDPPLF----DMHPVKTLFKIPRNPPPTLLHPEKWCRSF 263
>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of
cAMP-dependent protein kinase-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), Fission yeast Suppressor of loss of
cAMP-dependent protein kinase (Sck1)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sck1-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of fungal proteins
with similarity to the Schizosaccharomyces pombe STK
Sck1. Sck1 plays a role in trehalase activation
triggered by glucose and a nitrogen source. Trehalase
catalyzes the cleavage of the disaccharide trehalose to
glucose. Trehalose, as a carbohydrate reserve and stress
metabolite, plays an important role in the response of
yeast to environmental changes.
Length = 330
Score = 86.1 bits (213), Expect = 6e-18
Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 9/192 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF--EAFRNKTDAQRT-YREILFLKSFQRHPNIITM 625
GKG +G VY+ K+ ++ A+K + E K A R IL P I+ +
Sbjct: 2 GKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGL 61
Query: 626 LDIYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMH 683
++ + DLY+V +YM + ++ + ++ + +L L ++H +++
Sbjct: 62 KFSFQT--DSDLYLVTDYMSGGELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYDIVY 119
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARS-LSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
RDLKP NIL+D + I + D GL+++ L+D+K T + T Y APE+L+ + YT HV
Sbjct: 120 RDLKPENILLDATGHIALCDFGLSKANLTDNKTTNT-FCGTTEYLAPEVLLDEKGYTKHV 178
Query: 743 DIWSLGCILAEM 754
D WSLG ++ EM
Sbjct: 179 DFWSLGVLVFEM 190
>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP
kinase kinase 7 (MKK7) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK7 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK7 is a dual-specificity PK that phosphorylates and
activates its downstream target, c-Jun N-terminal kinase
(JNK), on specific threonine and tyrosine residues.
Although MKK7 is capable of dual phosphorylation, it
prefers to phosphorylate the threonine residue of JNK.
Thus, optimal activation of JNK requires both MKK4 (not
included in this subfamily) and MKK7. MKK7 is primarily
activated by cytokines. MKK7 is essential for liver
formation during embryogenesis. It plays roles in G2/M
cell cycle arrest and cell growth. In addition, it is
involved in the control of programmed cell death, which
is crucial in oncogenesis, cancer chemoresistance, and
antagonism to TNFalpha-induced killing, through its
inhibition by Gadd45beta and the subsequent suppression
of the JNK cascade.
Length = 296
Score = 84.7 bits (210), Expect = 1e-17
Identities = 76/268 (28%), Positives = 123/268 (45%), Gaps = 31/268 (11%)
Query: 555 DREDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREI-LFL 613
D DL+ NL + G G G VYK K +A+K++ NK + +R ++ + L
Sbjct: 13 DLNDLE---NLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRT-GNKEENKRILMDLDVVL 68
Query: 614 KSFQRHPNIITMLDIYKAVNNKDLYVVFEYME---NDLNKVIRDKILKDVHIRYIMFQLC 670
KS P I+ + + + D+++ E M + L K I+ I +D+ + + +
Sbjct: 69 KSHD-CPYIVKCYGYF--ITDSDVFICMELMSTCLDKLLKRIQGPIPEDI-LGKMTVAIV 124
Query: 671 NGLSYI---HACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYR 727
L Y+ H V+HRD+KPSNIL+D S ++K+ D G++ L DSK T Y
Sbjct: 125 KALHYLKEKHG--VIHRDVKPSNILLDASGNVKLCDFGISGRLVDSK-AKTRSAGCAAYM 181
Query: 728 APEIL---ISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQ-LQLIVNLVRPNPPH 783
APE + N +Y D+WSLG L E+ + + T + L I+ P+ P
Sbjct: 182 APERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLPP 241
Query: 784 ADKFYAGF---------KSKHEREKFNQ 802
+ F F K +R K+ +
Sbjct: 242 NEGFSPDFCSFVDLCLTKDHRKRPKYRE 269
>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 4. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 4 (MST4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST4 is sometimes
referred to as MASK (MST3 and SOK1-related kinase). It
plays a role in mitogen-activated protein kinase (MAPK)
signaling during cytoskeletal rearrangement,
morphogenesis, and apoptosis. It influences cell growth
and transformation by modulating the extracellular
signal-regulated kinase (ERK) pathway. MST4 may also
play a role in tumor formation and progression. It
localizes in the Golgi apparatus by interacting with the
Golgi matrix protein GM130 and may play a role in cell
migration.
Length = 277
Score = 83.9 bits (207), Expect = 1e-17
Identities = 59/215 (27%), Positives = 109/215 (50%), Gaps = 9/215 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
GKG++G V+K D +Q VAIK I + + + + +EI L P +
Sbjct: 13 GKGSFGEVFKGIDNRTQQVVAIKII-DLEEAEDEIEDIQQEITVLSQCDS-PYVTKYYGS 70
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRDLK 687
Y + L+++ EY+ ++R + I ++ ++ GL Y+H+ K +HRD+K
Sbjct: 71 Y--LKGTKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIK 128
Query: 688 PSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIWSL 747
+N+L+ + +K+ D G+A L+D++ ++ T ++ APE+ I Y DIWSL
Sbjct: 129 AANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEV-IQQSAYDSKADIWSL 187
Query: 748 GCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP 782
G E+ + + P S H ++++ + + NPP
Sbjct: 188 GITAIELAKGE---PPNSDMHPMRVLFLIPKNNPP 219
>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 3. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. MAP4K3 is required in the
activation of S6 kinase by amino acids and for the
phosphorylation of the mTOR-regulated inhibitor of
eukaryotic initiation factor 4E. mTOR regulates ribosome
biogenesis and protein translation, and is frequently
deregulated in cancer.
Length = 267
Score = 83.6 bits (206), Expect = 2e-17
Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 14/211 (6%)
Query: 556 REDLQQQINLLKE-GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLK 614
R + Q+ L++ G G YG VYKA + N + AIK I D +EI+ +K
Sbjct: 4 RRNPQEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVI--KLEPGEDFAVVQQEIIMMK 61
Query: 615 SFQRHPNIITMLDIYKAVNNKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIMFQLC 670
+H NI+ Y + L++ E+ D+ V L + I Y+ +
Sbjct: 62 DC-KHSNIVAYFGSY--LRRDKLWICMEFCGGGSLQDIYHVTGP--LSESQIAYVSRETL 116
Query: 671 NGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPE 730
GL Y+H+ MHRD+K +NIL+ + +K+ D G++ ++ + +I T ++ APE
Sbjct: 117 QGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPE 176
Query: 731 ILISNRR--YTHHVDIWSLGCILAEMLQSKP 759
+ R+ Y DIW++G E+ + +P
Sbjct: 177 VAAVERKGGYNQLCDIWAVGITAIELAELQP 207
>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 1. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously
expressed and is under transcriptional control of
numerous stimuli including cell stress (cell shrinkage),
serum, hormones (gluco- and mineralocorticoids),
gonadotropins, growth factors, interleukin-6, and other
cytokines. It plays roles in sodium retention and
potassium elimination in the kidney, nutrient transport,
salt sensitivity, memory consolidation, and cardiac
repolarization. A common SGK1 variant is associated with
increased blood pressure and body weight. SGK1 may also
contribute to tumor growth, neurodegeneration, fibrosing
disease, and ischemia.
Length = 325
Score = 85.1 bits (210), Expect = 2e-17
Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 9/218 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI-FEAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG++G V A K +++ A+K + +A K + + E L +HP ++ +
Sbjct: 4 GKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHF 63
Query: 628 IYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
++ + LY V +Y+ + R++ + R+ ++ + L Y+H+ +++RD
Sbjct: 64 SFQTADK--LYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRD 121
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LKP NIL+D I + D GL + + + + T Y APE+L + Y VD W
Sbjct: 122 LKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVL-HKQPYDRTVDWW 180
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIVN---LVRPN 780
LG +L EML P F +T+ I+N ++PN
Sbjct: 181 CLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPN 218
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 84.0 bits (208), Expect = 2e-17
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 41/225 (18%)
Query: 561 QQINLLKE-GKGAYGIVYKA--YDKNNK---QYVAIKKIFEAFRNKTDAQRTYREILFLK 614
+ L+E G+GA+G VYK N + VAIK + E + Q+ +R+ L
Sbjct: 5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKE--NAEPKVQQEFRQEAELM 62
Query: 615 SFQRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNK-VIRDKILKDVHIR--------- 663
S +HPNI+ +L + + ++FEY+ + DL++ ++R+ DV
Sbjct: 63 SDLQHPNIVCLLGV--CTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSS 120
Query: 664 -------YIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSL--SD-- 712
+I Q+ G+ Y+ + +HRDL N L+ + ++KI D GL+R + +D
Sbjct: 121 LDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYY 180
Query: 713 ---SKECLTEYIATRWYRAPEILISNRRYTHHVDIWSLGCILAEM 754
SK L RW PE ++ ++T DIWS G +L E+
Sbjct: 181 RVQSKSLL----PVRWM-PPEAILYG-KFTTESDIWSFGVVLWEI 219
>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR) subfamily; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). The InsR subfamily
is composed of InsR, Insulin-like Growth Factor-1
Receptor (IGF-1R), and similar proteins. PTKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR and
IGF-1R are receptor tyr kinases (RTKs) composed of two
alphabeta heterodimers. Binding of the ligand (insulin,
IGF-1, or IGF-2) to the extracellular alpha subunit
activates the intracellular tyr kinase domain of the
transmembrane beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR and IGF-1R, which share 84%
sequence identity in their kinase domains, display
physiologically distinct yet overlapping functions in
cell growth, differentiation, and metabolism. InsR
activation leads primarily to metabolic effects while
IGF-1R activation stimulates mitogenic pathways. In
cells expressing both receptors, InsR/IGF-1R hybrids are
found together with classical receptors. Both receptors
can interact with common adaptor molecules such as IRS-1
and IRS-2.
Length = 277
Score = 83.2 bits (206), Expect = 3e-17
Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 44/247 (17%)
Query: 557 EDLQQQINLLKE-GKGAYGIVYKAYDKN-----NKQYVAIKKIFEAFRNKTDAQRT--YR 608
E +++I L++E G+G++G+VY+ K + VAIK + E N + +R
Sbjct: 2 ELPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNE---NASMRERIEFLN 58
Query: 609 EILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYM-ENDLNKVIRDKILKDVHIRYIM- 666
E +K F H +++ +L + + VV E M + DL +R + + + +
Sbjct: 59 EASVMKEFNCH-HVVRLLGV--VSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGP 115
Query: 667 ----------FQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKEC 716
++ +G++Y+ A K +HRDL N ++ + ++KIGD G+ R + +
Sbjct: 116 PTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYE---- 171
Query: 717 LTEY--------IATRWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPGAST 766
T+Y + RW APE L + +T D+WS G +L EM L +P + G S
Sbjct: 172 -TDYYRKGGKGLLPVRWM-APESL-KDGVFTTKSDVWSFGVVLWEMATLAEQP-YQGLSN 227
Query: 767 SHQLQLI 773
L+ +
Sbjct: 228 EEVLKFV 234
>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 5. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K5, also called germinal
center kinase-related enzyme (GCKR), has been shown to
activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5
also facilitates Wnt signaling in B cells, and may
therefore be implicated in the control of cell fate,
proliferation, and polarity.
Length = 267
Score = 82.4 bits (203), Expect = 5e-17
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 14/211 (6%)
Query: 556 REDLQQQINLLKE-GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLK 614
R + Q L++ G G YG VYKA + + + A+K I D +EI +K
Sbjct: 4 RRNPQHDYELIQRVGSGTYGDVYKARNLHTGELAAVKII--KLEPGDDFSLIQQEIFMVK 61
Query: 615 SFQRHPNIITMLDIYKAVNNKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIMFQLC 670
+H NI+ Y ++ + L++ EY D+ V L ++ I Y+ +
Sbjct: 62 EC-KHCNIVAYFGSY--LSREKLWICMEYCGGGSLQDIYHVTGP--LSELQIAYVCRETL 116
Query: 671 NGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPE 730
GL+Y+H+ MHRD+K +NIL+ + +K+ D G+A ++ + +I T ++ APE
Sbjct: 117 QGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPE 176
Query: 731 I--LISNRRYTHHVDIWSLGCILAEMLQSKP 759
+ + N Y DIW++G E+ + +P
Sbjct: 177 VAAVEKNGGYNQLCDIWAVGITAIELAELQP 207
>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C theta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), theta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta
is selectively expressed in T-cells and plays an
important and non-redundant role in several aspects of
T-cell biology. Although T-cells also express other PKC
isoforms, PKC-theta is unique in that upon antigen
stimulation, it is translocated to the plasma membrane
at the immunological synapse, where it mediates signals
essential for T-cell activation. It is essential for
TCR-induced proliferation, cytokine production, T-cell
survival, and the differentiation and effector function
of T-helper (Th) cells, particularly Th2 and Th17.
PKC-theta is being developed as a therapeutic target for
Th2-mediated allergic inflammation and Th17-mediated
autoimmune diseases.
Length = 316
Score = 83.1 bits (205), Expect = 5e-17
Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 18/243 (7%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG++G V+ A K Q+ AIK + + D + T E L HP + +
Sbjct: 4 GKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYC 63
Query: 628 IYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDV-HIRYIMFQLCNGLSYIHACKVMHRD 685
++ N L+ V EY+ DL I+ D+ + ++ GL ++H+ +++RD
Sbjct: 64 TFQTKEN--LFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRD 121
Query: 686 LKPSNILIDKSCSIKIGDLGLARS--LSDSKECLTEYIATRWYRAPEILISNRRYTHHVD 743
LK NIL+D IKI D G+ + L D+K C + T Y APEIL+ ++Y VD
Sbjct: 122 LKLDNILLDTDGHIKIADFGMCKENMLGDAKTC--TFCGTPDYIAPEILLG-QKYNTSVD 178
Query: 744 IWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKHEREKFNQV 803
WS G +L EML + F G Q I R + P Y + ++ ++ ++
Sbjct: 179 WWSFGVLLYEMLIGQSPFHGHDEEELFQSI----RMDNP----CYPRWLTREAKDILVKL 230
Query: 804 VVK 806
V+
Sbjct: 231 FVR 233
>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 2. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more
restricted distribution that SGK1 and is most abundantly
expressed in epithelial tissues including kidney, liver,
pancreas, and the choroid plexus of the brain. In vitro
cellular assays show that SGK2 can stimulate the
activity of ion channels, the glutamate transporter
EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Length = 321
Score = 83.1 bits (205), Expect = 5e-17
Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 10/198 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQR---TYREILFLKSFQRHPNIITM 625
GKG++G V A K++ + A+K + + K Q R +L LK+ +HP ++ +
Sbjct: 4 GKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVL-LKNL-KHPFLVGL 61
Query: 626 LDIYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMH 683
Y + LY V +Y+ + R++ + R+ ++ + + Y+H+ +++
Sbjct: 62 H--YSFQTAEKLYFVLDYVNGGELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNIIY 119
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVD 743
RDLKP NIL+D + + D GL + + +E + + T Y APE+L Y VD
Sbjct: 120 RDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVL-RKEPYDRTVD 178
Query: 744 IWSLGCILAEMLQSKPLF 761
W LG +L EML P F
Sbjct: 179 WWCLGAVLYEMLYGLPPF 196
>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein
Serine/Threonine Kinases, Novel Protein Kinase C theta
and delta. Serine/Threonine Kinases (STKs), Novel
Protein Kinase C (nPKC), theta and delta-like isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The nPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
nPKCs are calcium-independent, but require DAG
(1,2-diacylglycerol) and phosphatidylserine (PS) for
activity. There are four nPKC isoforms, delta, epsilon,
eta, and theta. PKC-theta is selectively expressed in
T-cells and plays an important and non-redundant role in
several aspects of T-cell biology. PKC-delta plays a
role in cell cycle regulation and programmed cell death
in many cell types.
Length = 316
Score = 82.1 bits (203), Expect = 1e-16
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 6/198 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG++G V A K ++ AIK + + D + T E L HP + +
Sbjct: 4 GKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFC 63
Query: 628 IYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVH-IRYIMFQLCNGLSYIHACKVMHRD 685
++ + L+ V EY+ DL I+ D R+ ++ GL ++H +++RD
Sbjct: 64 TFQT--KEHLFFVMEYLNGGDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIYRD 121
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LK N+L+DK IKI D G+ + + + + + T Y APEI + ++Y VD W
Sbjct: 122 LKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEI-LKGQKYNESVDWW 180
Query: 746 SLGCILAEMLQSKPLFPG 763
S G +L EML + F G
Sbjct: 181 SFGVLLYEMLIGQSPFHG 198
>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine
Kinases, Fibroblast Growth Factor Receptors. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor (FGFR) subfamily; catalytic (c) domain. The
FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K).PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with three
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
FGFRs to their ligands, the FGFs, and to heparin/heparan
sulfate (HS) results in the formation of a ternary
complex, which leads to receptor dimerization and
activation, and intracellular signaling. There are at
least 23 FGFs and four types of FGFRs. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. FGF/FGFR signaling is
important in the regulation of embryonic development,
homeostasis, and regenerative processes. Depending on
the cell type and stage, FGFR signaling produces diverse
cellular responses including proliferation, growth
arrest, differentiation, and apoptosis. Aberrant
signaling leads to many human diseases such as skeletal,
olfactory, and metabolic disorders, as well as cancer.
Length = 293
Score = 80.9 bits (200), Expect = 2e-16
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 37/252 (14%)
Query: 562 QINLLKE-GKGAYGIVYKAY-----DKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKS 615
++ L K G+GA+G V KA + N VA+K + + + D E+ +K
Sbjct: 13 RLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDD-ATEKDLSDLVSEMEMMKM 71
Query: 616 FQRHPNIITMLDIYKAVNNKDLYVVFEY-----------------MEN--DLNKVIRDKI 656
+H NII +L + LYVV EY D + +
Sbjct: 72 IGKHKNIINLLGV--CTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEET- 128
Query: 657 LKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDS--- 713
L + +Q+ G+ ++ + K +HRDL N+L+ + +KI D GLAR +
Sbjct: 129 LTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYY 188
Query: 714 KECLTEYIATRWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPGASTSHQLQ 771
++ + +W APE L +R YTH D+WS G +L E+ L P +PG +
Sbjct: 189 RKTTNGRLPVKWM-APEAL-FDRVYTHQSDVWSFGVLLWEIFTLGGSP-YPGIPVEELFK 245
Query: 772 LIVNLVRPNPPH 783
L+ R P
Sbjct: 246 LLKEGYRMEKPQ 257
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 3. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK3 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGK3 is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. SGK3 also regulates many transporters,
ion channels, and receptors. It plays a critical role in
hair follicle morphogenesis and hair cycling.
Length = 325
Score = 81.2 bits (200), Expect = 2e-16
Identities = 54/196 (27%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI-FEAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG++G V A K + + A+K + + N+ + + E L +HP ++ +
Sbjct: 4 GKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLH- 62
Query: 628 IYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
Y + LY V +++ + R++ + R+ ++ + L Y+H+ +++RD
Sbjct: 63 -YSFQTTEKLYFVLDFVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSINIVYRD 121
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LKP NIL+D + + D GL + + T + T Y APE+ I + Y + VD W
Sbjct: 122 LKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEV-IRKQPYDNTVDWW 180
Query: 746 SLGCILAEMLQSKPLF 761
LG +L EML P F
Sbjct: 181 CLGAVLYEMLYGLPPF 196
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; catalytic (c) domain (repeat 2). The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal catalytic tyr kinase domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger
downstream signaling events such as the phosphorylation
of signal transducers and activators of transcription
(STATs). Jak2 is widely expressed in many tissues while
Jak3 is expressed only in hematopoietic cells. Jak2 is
essential for the signaling of hormone-like cytokines
such as growth hormone, erythropoietin, thrombopoietin,
and prolactin, as well as some IFNs and cytokines that
signal through the IL-3 and gp130 receptors. Jak3 binds
the shared receptor subunit common gamma chain and thus,
is essential in the signaling of cytokines that use it
such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
Disruption of Jak2 in mice results in an embryonic
lethal phenotype with multiple defects including
erythropoietic and cardiac abnormalities. It is the only
Jak gene that results in a lethal phenotype when
disrupted in mice. A mutation in the pseudokinase domain
of Jak2, V617F, is present in many myeloproliferative
diseases, including almost all patients with
polycythemia vera, and 50% of patients with essential
thrombocytosis and myelofibrosis. Jak3 is important in
lymphoid development and myeloid cell differentiation.
Inactivating mutations in Jak3 have been reported in
humans with severe combined immunodeficiency (SCID).
Length = 284
Score = 80.6 bits (199), Expect = 3e-16
Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 32/205 (15%)
Query: 569 GKGAYGIV----YKAYDKNNKQYVAIKKIFEAFRNKTDAQRTY-REILFLKSFQRHPNII 623
GKG +G V Y N + VA+KK+ + + R + REI LKS Q H NI+
Sbjct: 13 GKGNFGSVELCRYDPLQDNTGEVVAVKKLQHS---TAEHLRDFEREIEILKSLQ-HDNIV 68
Query: 624 TMLDIYKAVNNKDLYVVFEYMENDLNKVIRDKILKDV----HIRYIMF--QLCNGLSYIH 677
+ + ++L +V EY+ +RD + K H + +++ Q+C G+ Y+
Sbjct: 69 KYKGVCYSAGRRNLRLVMEYLPYG---SLRDYLQKHRERLDHRKLLLYASQICKGMEYLG 125
Query: 678 ACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATR--------WYRAP 729
+ + +HRDL NIL++ +KIGD GL + L K EY R WY AP
Sbjct: 126 SKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDK----EYYKVREPGESPIFWY-AP 180
Query: 730 EILISNRRYTHHVDIWSLGCILAEM 754
E L + +++ D+WS G +L E+
Sbjct: 181 ESLTES-KFSVASDVWSFGVVLYEL 204
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lck (lymphocyte-specific
kinase) and Blk are members of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) tyr
kinases. Src kinases contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Lck is expressed in T-cells and natural
killer (NK) cells. It plays a critical role in T-cell
maturation, activation, and T-cell receptor (TCR)
signaling. Lck phosphorylates ITAM (immunoreceptor tyr
activation motif) sequences on several subunits of TCRs,
leading to the activation of different second messenger
cascades. Phosphorylated ITAMs serve as binding sites
for other signaling factor such as Syk and ZAP-70,
leading to their activation and propagation of
downstream events. In addition, Lck regulates
drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 79.9 bits (197), Expect = 3e-16
Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 30/224 (13%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
K G G +G V+ Y + + VAIK + + + E +K Q HP ++ +
Sbjct: 13 KLGAGQFGEVWMGYYNGHTK-VAIKSLKQG---SMSPEAFLAEANLMKQLQ-HPRLVRL- 66
Query: 627 DIYKAVNNKDLYVVFEYMEN----DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVM 682
Y V + +Y++ EYMEN D K L + + Q+ G+++I +
Sbjct: 67 --YAVVTQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYI 124
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIA-------TRWYRAPEILISN 735
HRDL+ +NIL+ ++ KI D GLAR + D+ EY A +W APE I+
Sbjct: 125 HRDLRAANILVSETLCCKIADFGLARLIEDN-----EYTAREGAKFPIKW-TAPEA-INY 177
Query: 736 RRYTHHVDIWSLGCILAEMLQ-SKPLFPGASTSHQLQLIVNLVR 778
+T D+WS G +L E++ + +PG + ++I NL R
Sbjct: 178 GTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNP---EVIQNLER 218
>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The GRK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. GRKs phosphorylate and
regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors, which
regulate some part of nearly all physiological
functions. Phosphorylated GPCRs bind to arrestins, which
prevents further G protein signaling despite the
presence of activating ligand. GRKs contain a central
catalytic domain, flanked by N- and C-terminal
extensions. The N-terminus contains an RGS (regulator of
G protein signaling) homology (RH) domain and several
motifs. The C-terminus diverges among different groups
of GRKs. There are seven types of GRKs, named GRK1 to
GRK7. They are subdivided into three main groups: visual
(GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and
GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is
widespread while GRK1/4/7 show a limited tissue
distribution. The substrate spectrum of the widely
expressed GRKs partially overlaps. GRKs play important
roles in the cardiovascular, immune, respiratory,
skeletal, and nervous systems.
Length = 277
Score = 80.2 bits (198), Expect = 3e-16
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 668 QLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYR 727
Q+ GL ++H ++++RDLKP N+L+D +++I DLGLA L K+ + T Y
Sbjct: 103 QIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKK-IKGRAGTPGYM 161
Query: 728 APEILISNRRYTHHVDIWSLGCILAEMLQSKPLF 761
APE+L Y VD ++LGC L EM+ + F
Sbjct: 162 APEVLQ-GEVYDFSVDWFALGCTLYEMIAGRSPF 194
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src
subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr,
Fyn, Yrk, and Yes. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) tyr kinases which are anchored to the
plasma membrane. They contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, and Lyn show a limited expression pattern.
Length = 261
Score = 79.7 bits (197), Expect = 4e-16
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 28/206 (13%)
Query: 562 QINLLKE-GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHP 620
+ L ++ G G +G V+ N VA+K + + +E +K RH
Sbjct: 7 SLKLERKLGAGQFGEVWMGT-WNGTTKVAVKTLKPGTMSPEA---FLQEAQIMKKL-RHD 61
Query: 621 NIITMLDIYKAVNNKD-LYVVFEYMEN-DLNKVIRDKILKDVHIR---YIMFQLCNGLSY 675
++ + Y + ++ +Y+V EYM L ++ K + + + Q+ G++Y
Sbjct: 62 KLVQL---YAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAY 118
Query: 676 IHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIA-------TRWYRA 728
+ + +HRDL NIL+ ++ KI D GLAR + D EY A +W A
Sbjct: 119 LESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDD-----EYTAREGAKFPIKW-TA 172
Query: 729 PEILISNRRYTHHVDIWSLGCILAEM 754
PE R+T D+WS G +L E+
Sbjct: 173 PEAANYG-RFTIKSDVWSFGILLTEI 197
>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein
Serine/Threonine Kinase, 70 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 70 kDa
ribosomal protein S6 kinase (p70S6K) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The p70S6K subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. p70S6K (or S6K)
contains only one catalytic kinase domain, unlike p90
ribosomal S6 kinases (RSKs). It acts as a downstream
effector of the STK mTOR (mammalian Target of Rapamycin)
and plays a role in the regulation of the translation
machinery during protein synthesis. p70S6K also plays a
pivotal role in regulating cell size and glucose
homeostasis. Its targets include S6, the translation
initiation factor eIF3, and the insulin receptor
substrate IRS-1, among others. Mammals contain two
isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta).
Length = 323
Score = 80.6 bits (199), Expect = 4e-16
Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 15/204 (7%)
Query: 569 GKGAYGIVY---KAYDKNNKQYVAIKKIFEA--FRNKTDAQRTYREILFLKSFQRHPNII 623
GKG YG V+ K + + A+K + +A RN+ D T E L++ + HP I+
Sbjct: 5 GKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVK-HPFIV 63
Query: 624 TMLDIYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKV 681
+ IY LY++ EY+ + R+ I + + + ++ L ++H +
Sbjct: 64 DL--IYAFQTGGKLYLILEYLSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQGI 121
Query: 682 MHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHH 741
++RDLKP NIL+D +K+ D GL + + T Y APEIL+ R H
Sbjct: 122 IYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILM---RSGHG 178
Query: 742 --VDIWSLGCILAEMLQSKPLFPG 763
VD WSLG ++ +ML P F
Sbjct: 179 KAVDWWSLGALMYDMLTGAPPFTA 202
>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, 90 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 90 kDa
ribosomal protein S6 kinase (RSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. RSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family.
They are activated by signaling inputs from
extracellular regulated kinase (ERK) and
phosphoinositide dependent kinase 1 (PDK1). ERK
phosphorylates and activates the CTD of RSK, serving as
a docking site for PDK1, which phosphorylates and
activates the NTD, which in turn phosphorylates all
known RSK substrates. RSKs act as downstream effectors
of mitogen-activated protein kinase (MAPK) and play key
roles in mitogen-activated cell growth, differentiation,
and survival. Mammals possess four RSK isoforms (RSK1-4)
from distinct genes. RSK proteins are also referred to
as MAP kinase-activated protein kinases (MAPKAPKs),
p90-RSKs, or p90S6Ks.
Length = 318
Score = 80.2 bits (198), Expect = 5e-16
Identities = 59/212 (27%), Positives = 107/212 (50%), Gaps = 11/212 (5%)
Query: 569 GKGAYGIVY---KAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITM 625
G+G++G V+ K + Q A+K + +A D RT E L HP I+ +
Sbjct: 5 GQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVN-HPFIVKL 63
Query: 626 LDIYKAVNNKDLYVVFEYMEN-DL-NKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMH 683
Y LY++ +++ DL ++ ++ + + +++ + +L L ++H+ +++
Sbjct: 64 H--YAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIY 121
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRR-YTHHV 742
RDLKP NIL+D+ IK+ D GL++ D ++ + T Y APE++ NRR +T
Sbjct: 122 RDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVV--NRRGHTQSA 179
Query: 743 DIWSLGCILAEMLQSKPLFPGASTSHQLQLIV 774
D WS G ++ EML F G + +I+
Sbjct: 180 DWWSFGVLMFEMLTGSLPFQGKDRKETMTMIL 211
>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled
Receptor Kinase 4-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK4-like group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. Members of the
GRK4-like group include GRK4, GRK5, GRK6, and similar
GRKs. GRKs in this group contain an N-terminal RGS
homology (RH) domain and a catalytic domain, but lack a
G protein betagamma-subunit binding domain. They are
localized to the plasma membrane through
post-translational lipid modification or direct binding
to PIP2.
Length = 285
Score = 79.5 bits (196), Expect = 5e-16
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 668 QLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYR 727
++ GL +H ++++RDLKP NIL+D I+I DLGLA + + E + + T Y
Sbjct: 110 EITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEG-ETIRGRVGTVGYM 168
Query: 728 APEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPP-HADK 786
APE+ + N RYT D W LGC++ EM++ K F + + + V+ + +++K
Sbjct: 169 APEV-VKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEYSEK 227
Query: 787 FYAGFKS 793
F +S
Sbjct: 228 FSEAARS 234
>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Tyrosine kinase expressed in hepatocellular carcinoma
(Tec) subfamily; catalytic (c) domain. The Tec subfamily
is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk
(Txk), and similar proteins. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tec kinases are
cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with
similarity to Src kinases in that they contain Src
homology protein interaction domains (SH3, SH2)
N-terminal to the catalytic tyr kinase domain. Unlike
Src kinases, most Tec subfamily members (except Rlk)
also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases form the second largest subfamily of nRTKs and
are expressed mainly by haematopoietic cells, although
Tec and Bmx are also found in endothelial cells. B-cells
express Btk and Tec, while T-cells express Itk, Txk, and
Tec. Collectively, Tec kinases are expressed in a
variety of myeloid cells such as mast cells, platelets,
macrophages, and dendritic cells. Each Tec kinase shows
a distinct cell-type pattern of expression. The function
of Tec kinases in lymphoid cells have been studied
extensively. They play important roles in the
development, differentiation, maturation, regulation,
survival, and function of B-cells and T-cells. Mutations
in Btk cause the severe B-cell immunodeficiency,
X-linked agammaglobulinaemia (XLA).
Length = 256
Score = 78.6 bits (194), Expect = 6e-16
Identities = 56/234 (23%), Positives = 104/234 (44%), Gaps = 26/234 (11%)
Query: 562 QINLLKE-GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHP 620
++ LKE G G +G+V+ + VAIK I E ++ D E + HP
Sbjct: 5 ELTFLKELGSGQFGVVHLGKWRGKID-VAIKMIREGAMSEDD---FIEEAKVMMKLS-HP 59
Query: 621 NIITMLDIYKAVNNKDLYVVFEYMEND-LNKVIRD--KILKDVHIRYIMFQLCNGLSYIH 677
N++ + + + +++V EYM N L +R+ L + + +C + Y+
Sbjct: 60 NLVQLYGV--CTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLE 117
Query: 678 ACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIAT-------RWYRAPE 730
+ +HRDL N L+ + +K+ D GLAR + D +Y ++ +W PE
Sbjct: 118 SNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDD-----QYTSSQGTKFPVKW-APPE 171
Query: 731 ILISNRRYTHHVDIWSLGCILAEML-QSKPLFPGASTSHQLQLIVNLVRPNPPH 783
+ + R++ D+WS G ++ E+ + K + S S ++ + R P
Sbjct: 172 VFDYS-RFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYRLYRPK 224
>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src
kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; C-terminal Src kinase (Csk)
subfamily; catalytic (c) domain. The Csk subfamily is
composed of Csk, Chk, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk and Chk are translocated to the membrane via binding
to specific transmembrane proteins, G-proteins, or
adaptor proteins near the membrane. Csk catalyzes the
tyr phosphorylation of the regulatory C-terminal tail of
Src kinases, resulting in their inactivation. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As negative regulators of Src
kinases, Csk and Chk play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression.
Length = 256
Score = 78.6 bits (194), Expect = 6e-16
Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 558 DLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQ 617
L I GKG +G V + K VA+K + + T AQ E + +
Sbjct: 9 KLGATI-----GKGEFGDVMLGDYRGQK--VAVKCLK---DDSTAAQAFLAEASVMTTL- 57
Query: 618 RHPNIITMLDIYKAVNNKDLYVVFEYMEND-----LNKVIRDKILKDVHIRYIMFQLCNG 672
RHPN++ +L + + LY+V EYM L R I + + + +C G
Sbjct: 58 RHPNLVQLLGV--VLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFAL-DVCEG 114
Query: 673 LSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEIL 732
+ Y+ +HRDL N+L+ + K+ D GLA+ S ++ + + +W APE L
Sbjct: 115 MEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD--SGKLPVKW-TAPEAL 171
Query: 733 ISNRRYTHHVDIWSLGCILAEM 754
++++ D+WS G +L E+
Sbjct: 172 -REKKFSTKSDVWSFGILLWEI 192
>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
Kinases, Met and Ron. Protein Tyrosine Kinase (PTK)
family; Met and Ron; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Met and
Ron are receptor tyr kinases (RTKs) composed of an
alpha-beta heterodimer. The extracellular alpha chain is
disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic domain. Binding
to their ligands leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Met binds to the ligand, hepatocyte growth
factor/scatter factor (HGF/SF), and is also called the
HGF receptor. HGF/Met signaling plays a role in growth,
transformation, cell motility, invasion, metastasis,
angiogenesis, wound healing, and tissue regeneration.
Aberrant expression of Met through mutations or gene
amplification is associated with many human cancers
including hereditary papillary renal and gastric
carcinomas. The ligand for Ron is macrophage stimulating
protein (MSP). Ron signaling is important in regulating
cell motility, adhesion, proliferation, and apoptosis.
Aberrant Ron expression is implicated in tumorigenesis
and metastasis.
Length = 262
Score = 78.7 bits (194), Expect = 7e-16
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 38/209 (18%)
Query: 569 GKGAYGIVYKAY---DKNNKQYVAIKKIFEAFRNK-TDAQRT---YREILFLKSFQRHPN 621
GKG +G VY K + A+K + N+ TD + +E + +K F HPN
Sbjct: 4 GKGHFGCVYHGTLIDSDGQKIHCAVKSL-----NRITDLEEVEQFLKEGIIMKDFS-HPN 57
Query: 622 IITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRDK----ILKDVHIRYIMF--QLCNGLS 674
++++L I L VV YM++ DL IR + +KD+ I F Q+ G+
Sbjct: 58 VLSLLGICLPSEGSPL-VVLPYMKHGDLRNFIRSETHNPTVKDL----IGFGLQVAKGME 112
Query: 675 YIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILI- 733
Y+ + K +HRDL N ++D+S ++K+ D GLAR + D EY + + ++ +
Sbjct: 113 YLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDK-----EYYSVHNHTGAKLPVK 167
Query: 734 -------SNRRYTHHVDIWSLGCILAEML 755
+++T D+WS G +L E++
Sbjct: 168 WMALESLQTQKFTTKSDVWSFGVLLWELM 196
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 79.7 bits (196), Expect = 1e-15
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 7/209 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG +G V +K + +Y A+K + E K + T E LK+ RHP + ++
Sbjct: 4 GKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKN-TRHPFLTSLK- 61
Query: 628 IYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
Y L V EY+ + R+++ + R+ ++ + L Y+H+ K+++RD
Sbjct: 62 -YSFQTKDRLCFVMEYVNGGELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRD 120
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LK N+++DK IKI D GL + + + T Y APE+L N Y VD W
Sbjct: 121 LKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDN-DYGRAVDWW 179
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIV 774
LG ++ EM+ + F +LI+
Sbjct: 180 GLGVVMYEMMCGRLPFYNQDHEKLFELIL 208
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 80.4 bits (198), Expect = 2e-15
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%)
Query: 618 RHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRDKI-----LKDVHIRYIMFQLCN 671
H I+ D +K+ + L ++ EY DLNK I+ ++ ++ + + +Q+
Sbjct: 123 DHFGIVKHFDDFKS--DDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVL 180
Query: 672 GLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSK--ECLTEYIATRWYRAP 729
L +H+ K+MHRDLK +NI + + IK+GD G ++ SDS + + + T +Y AP
Sbjct: 181 ALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAP 240
Query: 730 EILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIV 774
E L +RY+ D+WSLG IL E+L F G S +Q ++
Sbjct: 241 E-LWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVL 284
>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional.
Length = 467
Score = 80.4 bits (198), Expect = 2e-15
Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 29/227 (12%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFL-KSFQRHP-NIITML 626
G+G +G V +A+D+ K+Y A+K + + DA+ EI F+ K Q P + ++
Sbjct: 138 GEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKI---EIQFMEKVRQADPADRFPLM 194
Query: 627 DIYKAVNNKDLY---VVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHA-CKVM 682
I + N+ + V+ +Y L+ +++ H+ I+FQ L Y H +M
Sbjct: 195 KIQRYFQNETGHMCIVMPKYGPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELHLM 254
Query: 683 HRDLKPSNILIDKS----------------CSIKIGDLGLARSLSDSKECLTEYIATRWY 726
H DLKP NIL++ S C ++I DLG D + T ++TR Y
Sbjct: 255 HTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLG---GCCDERHSRTAIVSTRHY 311
Query: 727 RAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLI 773
R+PE+++ + + D+WS+GCI+ E+ K L+ L L+
Sbjct: 312 RSPEVVLG-LGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLM 357
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine
Kinase, Muscle-specific kinase. Protein Tyrosine Kinase
(PTK) family; Muscle-specific kinase (Musk); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Musk is a receptor tyr kinase (RTK) containing an
extracellular region with four immunoglobulin-like
domains and a cysteine-rich cluster, a transmembrane
segment, and an intracellular catalytic domain. Musk is
expressed and concentrated in the postsynaptic membrane
in skeletal muscle. It is essential for the
establishment of the neuromuscular junction (NMJ), a
peripheral synapse that conveys signals from motor
neurons to muscle cells. Agrin, a large proteoglycan
released from motor neurons, stimulates Musk
autophosphorylation and activation, leading to the
clustering of acetylcholine receptors (AChRs). To date,
there is no evidence to suggest that agrin binds
directly to Musk. Mutations in AChR, Musk and other
partners are responsible for diseases of the NMJ, such
as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 77.6 bits (191), Expect = 3e-15
Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 41/234 (17%)
Query: 569 GKGAYGIVYKAYDKNNKQY-----VAIKKIFEAFRNKTDAQRTY-REILFLKSFQRHPNI 622
G+GA+G V++A Y VA+K + E D Q + RE + F HPNI
Sbjct: 14 GQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE--ASADMQADFQREAALMAEFD-HPNI 70
Query: 623 ITMLDIYKAVNNKDLYVVFEYME-NDLNKVIRDKI-----------------------LK 658
+ +L + K + ++FEYM DLN+ +R + L
Sbjct: 71 VKLLGV--CAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLS 128
Query: 659 DVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECL- 717
I Q+ G++Y+ K +HRDL N L+ ++ +KI D GL+R++ +
Sbjct: 129 CTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKA 188
Query: 718 --TEYIATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQ 769
+ I RW PE + N RYT D+W+ G +L E+ S + P +H+
Sbjct: 189 SENDAIPIRWM-PPESIFYN-RYTTESDVWAYGVVLWEIF-SYGMQPYYGMAHE 239
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 78.1 bits (192), Expect = 3e-15
Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 11/239 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG +G V +K +Y A+K + E K + T E L++ RHP + +
Sbjct: 4 GKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN-TRHPFLTALK- 61
Query: 628 IYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
Y + L V EY + R+++ + R+ ++ + L Y+H+ V++RD
Sbjct: 62 -YAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRD 120
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
+K N+++DK IKI D GL + + + T Y APE+L N Y VD W
Sbjct: 121 IKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDN-DYGRAVDWW 179
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLI----VNLVRPNPPHADKFYAGFKSKHEREKF 800
LG ++ EM+ + F +LI + R P A AG K +++
Sbjct: 180 GLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRL 238
>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Ephrin Receptor (EphR) subfamily; catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). They can be classified into two classes (EphA
and EphB), according to their extracellular sequences,
which largely correspond to binding preferences for
either GPI-anchored ephrin-A ligands or transmembrane
ephrin-B ligands. Vertebrates have ten EphA and six EhpB
receptors, which display promiscuous ligand interactions
within each class. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. This allows ephrin/EphR dimers to form,
leading to the activation of the intracellular tyr
kinase domain. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). The main effect of ephrin/EphR interaction
is cell-cell repulsion or adhesion. Ephrin/EphR
signaling is important in neural development and
plasticity, cell morphogenesis and proliferation,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis.
Length = 266
Score = 77.0 bits (190), Expect = 3e-15
Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 19/198 (9%)
Query: 569 GKGAYGIVYKA-YDKNNKQY--VAIKKIFEAFRNKTDAQRT--YREILFLKSFQRHPNII 623
G G +G V + K+ VAIK + +D QR E + F HPNII
Sbjct: 13 GGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGS---SDKQRLDFLTEASIMGQFD-HPNII 68
Query: 624 TMLDIYKAVNNKDLYVVFEYMEN-DLNKVIR--DKILKDVHIRYIMFQLCNGLSYIHACK 680
+ + + + ++ EYMEN L+K +R D + ++ + +G+ Y+
Sbjct: 69 RLEGVVTKS--RPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMN 126
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY---IATRWYRAPEILISNRR 737
+HRDL NIL++ + K+ D GL+R L DS+ T I RW APE I+ R+
Sbjct: 127 YVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRW-TAPEA-IAYRK 184
Query: 738 YTHHVDIWSLGCILAEML 755
+T D+WS G ++ E++
Sbjct: 185 FTSASDVWSFGIVMWEVM 202
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAST kinases contain an
N-terminal domain of unknown function, a central
catalytic domain, and a C-terminal PDZ domain that
mediates protein-protein interactions. There are four
mammalian MAST kinases, named MAST1-MAST4. MAST1 is also
referred to as syntrophin-associated STK (SAST), while
MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 77.1 bits (190), Expect = 5e-15
Identities = 67/219 (30%), Positives = 99/219 (45%), Gaps = 38/219 (17%)
Query: 571 GAYGIVYKAYDKNNKQYVAIKKIFE---AFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GAYG VY K +Q A+KKI + RN+ R+IL +F +P +++M
Sbjct: 12 GAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDIL---TFAENPFVVSMFC 68
Query: 628 IYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMF-QLCNGLSYIHACKVMHRD 685
++ + L +V EY+E D ++++ V + + F + L Y+H ++HRD
Sbjct: 69 SFET--KRHLCMVMEYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRD 126
Query: 686 LKPSNILIDKSCSIKIGDLGL--------------------ARSLSDSKECLT-EYIATR 724
LKP N+LI IK+ D GL R D + C T EYI
Sbjct: 127 LKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYI--- 183
Query: 725 WYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPG 763
APE+ I + Y VD W++G IL E L F G
Sbjct: 184 ---APEV-ILRQGYGKPVDWWAMGIILYEFLVGCVPFFG 218
>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine
Kinases, Class EphB Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
class EphB receptors; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). Class EphB receptors bind to transmembrane
ephrin-B ligands. There are six vertebrate EhpB
receptors (EphB1-6), which display promiscuous
interactions with three ephrin-B ligands. One exception
is EphB2, which also interacts with ephrin A5. EphRs
contain an ephrin-binding domain and two fibronectin
repeats extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion. EphBRs play important roles in synapse
formation and plasticity, spine morphogenesis, axon
guidance, and angiogenesis. In the intestinal
epithelium, EphBRs are Wnt signaling target genes that
control cell compartmentalization. They function as
suppressors of color cancer progression.
Length = 269
Score = 76.1 bits (187), Expect = 7e-15
Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 42/264 (15%)
Query: 569 GKGAYGIVYKAYDK---NNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQ---RHPNI 622
G G +G V + K + +VAIK + + T+ QR R+ L S HPNI
Sbjct: 13 GAGEFGEVCRGRLKLPGKREIFVAIKTLKSGY---TEKQR--RDFLSEASIMGQFDHPNI 67
Query: 623 ITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIR--DKILKDVHIRYIMFQLCNGLSYIHAC 679
I + + ++ + ++ E+MEN L+ +R D + + ++ + G+ Y+
Sbjct: 68 IHLEGV--VTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEM 125
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKE------CLTEYIATRWYRAPEILI 733
+HRDL NIL++ + K+ D GL+R L D L I RW APE I
Sbjct: 126 NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRW-TAPEA-I 183
Query: 734 SNRRYTHHVDIWSLGCILAEMLQ--SKPLFPGASTSHQLQLIVNLVR-----PNPP---- 782
+ R++T D+WS G ++ E++ +P + ++ Q ++N + P P
Sbjct: 184 AYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSN-----QDVINAIEQDYRLPPPMDCPT 238
Query: 783 --HADKFYAGFKSKHEREKFNQVV 804
H K ++ R KF Q+V
Sbjct: 239 ALHQLMLDCWQKDRNARPKFGQIV 262
>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK
kinase (MEK) subfamily, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine or tyrosine residues on protein
substrates. The MEK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1
and MEK2 are dual-specificity PKs that phosphorylate and
activate the downstream targets, ERK(extracellular
signal-regulated kinase) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1/2, and finally to ERK1/2. The ERK
cascade plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. This cascade has also been
implicated in synaptic plasticity, migration,
morphological determination, and stress response
immunological reactions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1/2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 308
Score = 76.3 bits (188), Expect = 8e-15
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 28/180 (15%)
Query: 632 VNNKDLYVVFEYMEN-DLNKVIR------DKILKDVHIRYIMFQLCNGLSYIH-ACKVMH 683
++ ++ + E+M+ L++V++ + IL + I + GL+Y+ K+MH
Sbjct: 69 YSDGEISICMEHMDGGSLDQVLKKAGRIPENILGKISIAVL-----RGLTYLREKHKIMH 123
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVD 743
RD+KPSNIL++ IK+ D G++ L DS ++ TR Y +PE L YT D
Sbjct: 124 RDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGT-HYTVQSD 180
Query: 744 IWSLGCILAEML------------QSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGF 791
IWSLG L EM + + +F + + + V +PP + + A F
Sbjct: 181 IWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIF 240
>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase,
Interleukin-2-inducible T-cell Kinase. Protein Tyrosine
Kinase (PTK) family; Interleukin-2 (IL-2)-inducible
T-cell kinase (Itk); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Itk (also
known as Tsk or Emt) is a member of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Itk
contains the Tec homology (TH) domain containing one
proline-rich region and a zinc-binding region. Tec
kinases are expressed mainly by haematopoietic cells.
Itk is expressed in T-cells and mast cells, and is
important in their development and differentiation. Of
the three Tec kinases expressed in T-cells, Itk plays
the predominant role in T-cell receptor (TCR) signaling.
It is activated by phosphorylation upon TCR crosslinking
and is involved in the pathway resulting in
phospholipase C-gamma1 activation and actin
polymerization. It also plays a role in the downstream
signaling of the T-cell costimulatory receptor CD28, the
T-cell surface receptor CD2, and the chemokine receptor
CXCR4. In addition, Itk is crucial for the development
of T-helper(Th)2 effector responses.
Length = 256
Score = 75.4 bits (185), Expect = 9e-15
Identities = 49/192 (25%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G G +G+V+ Y K+ VAIK I E ++ D + ++ L HP ++ + +
Sbjct: 13 GSGQFGLVWLGY-WLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLS----HPKLVQLYGV 67
Query: 629 YKAVNNKDLYVVFEYMEND-LNKVIRDK--ILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
+ +VFE+ME+ L+ +R + + + +C G++Y+ + V+HRD
Sbjct: 68 --CTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRD 125
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRW---YRAPEILISNRRYTHHV 742
L N L+ ++ +K+ D G+ R + D + T T++ + +PE+ S +Y+
Sbjct: 126 LAARNCLVGENQVVKVSDFGMTRFVLDDQ--YTSSTGTKFPVKWSSPEV-FSFSKYSSKS 182
Query: 743 DIWSLGCILAEM 754
D+WS G ++ E+
Sbjct: 183 DVWSFGVLMWEV 194
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 75.6 bits (186), Expect = 2e-14
Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 9/191 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG +G V +K +Y A+K + E K + T E L++ RHP + +
Sbjct: 4 GKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQN-TRHPFLTALK- 61
Query: 628 IYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
Y + L V EY + R+++ + R+ ++ + L Y+H+C V++RD
Sbjct: 62 -YSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRD 120
Query: 686 LKPSNILIDKSCSIKIGDLGLARS-LSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
LK N+++DK IKI D GL + +SD T + T Y APE+L N Y VD
Sbjct: 121 LKLENLMLDKDGHIKITDFGLCKEGISDGATMKT-FCGTPEYLAPEVLEDN-DYGRAVDW 178
Query: 745 WSLGCILAEML 755
W LG ++ EM+
Sbjct: 179 WGLGVVMYEMM 189
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Fes subfamily; catalytic (c) domain. Fes subfamily
members include Fes (or Fps), Fer, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes and Fer kinases play roles in haematopoiesis,
inflammation and immunity, growth factor signaling,
cytoskeletal regulation, cell migration and adhesion,
and the regulation of cell-cell interactions. Fes and
Fer show redundancy in their biological functions.
Length = 251
Score = 73.7 bits (181), Expect = 3e-14
Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 24/228 (10%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
K GKG +G VYK K N + VA+K ++ +E LK + HPNI+ ++
Sbjct: 2 KIGKGNFGDVYKGVLKGNTE-VAVKTCRSTL-PPDLKRKFLQEAEILKQY-DHPNIVKLI 58
Query: 627 DIYKAVNNKDLYVVFEYMEN-DLNKVIRDKI--LKDVHIRYIMFQLCNGLSYIHACKVMH 683
+ V + +Y+V E + L +R K L + + G+ Y+ + +H
Sbjct: 59 GV--CVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIH 116
Query: 684 RDLKPSNILIDKSCSIKIGDLGLAR-------SLSDSKECLTEYIATRWYRAPEILISNR 736
RDL N L+ ++ +KI D G++R ++SD + I +W APE L +
Sbjct: 117 RDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDG----LKQIPIKW-TAPEAL-NYG 170
Query: 737 RYTHHVDIWSLGCILAEM--LQSKPLFPGASTSHQLQLIVNLVRPNPP 782
RYT D+WS G +L E L P +PG S + I + R P
Sbjct: 171 RYTSESDVWSYGILLWETFSLGDTP-YPGMSNQQTRERIESGYRMPAP 217
>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA2
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion, making it important in neural development and
plasticity, cell morphogenesis, cell-fate determination,
embryonic development, tissue patterning, and
angiogenesis. The EphA2 receptor is overexpressed in
tumor cells and tumor blood vessels in a variety of
cancers including breast, prostate, lung, and colon. As
a result, it is an attractive target for drug design
since its inhibition could affect several aspects of
tumor progression.
Length = 268
Score = 74.2 bits (182), Expect = 3e-14
Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 569 GKGAYGIVYKAYDK---NNKQYVAIKKIFEAFRNKTDAQRT--YREILFLKSFQRHPNII 623
G G +G V++ K + VAIK + + T+ QR E + F H NII
Sbjct: 14 GAGEFGEVFRGILKMPGRKEVAVAIKTLKPGY---TEKQRQDFLSEASIMGQFS-HHNII 69
Query: 624 TMLDIYKAVNNKDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCN-------GLSYI 676
+ + K ++ EYMEN DK L+D + +QL G+ Y+
Sbjct: 70 RLEGVVTKF--KPAMIITEYMENG----ALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYL 123
Query: 677 HACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY----IATRWYRAPEIL 732
+HRDL NIL++ + K+ D GL+R L D E I RW APE
Sbjct: 124 SDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRW-TAPEA- 181
Query: 733 ISNRRYTHHVDIWSLGCILAEML 755
I+ R++T D+WS G ++ E++
Sbjct: 182 IAYRKFTSASDVWSFGIVMWEVM 204
>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Citron Rho-interacting kinase.
Serine/Threonine Kinases (STKs), Citron Rho-interacting
kinase (CRIK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CRIK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CRIK is also called citron kinase. It contains
a catalytic domain, a central coiled-coil domain, and a
C-terminal region containing a Rho-binding domain (RBD),
a zinc finger, and a pleckstrin homology (PH) domain, in
addition to other motifs. CRIK, an effector of the small
GTPase Rho, plays an important function during
cytokinesis and affects its contractile process.
CRIK-deficient mice show severe ataxia and epilepsy as a
result of abnormal cytokinesis and massive apoptosis in
neuronal precursors. A Down syndrome critical region
protein TTC3 interacts with CRIK and inhibits
CRIK-dependent neuronal differentiation and neurite
extension.
Length = 330
Score = 74.9 bits (184), Expect = 3e-14
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 11/219 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+G +G V +K A+K + ++ + + E + S P I +
Sbjct: 10 GRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQ-- 67
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVIR--DKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
Y + +LY+V EY DL ++ + + ++ + +L + +H +HRD
Sbjct: 68 YAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRD 127
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY-IATRWYRAPEILI-----SNRRYT 739
+KP N+LID++ IK+ D G A L+ +K ++ + T Y APE+L Y
Sbjct: 128 IKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYG 187
Query: 740 HHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVR 778
D WSLG I EM+ + F +++ I+N R
Sbjct: 188 VECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQR 226
>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine
Kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Spleen Tyrosine Kinase (Syk)
subfamily; catalytic (c) domain. The Syk subfamily is
composed of Syk, ZAP-70, Shark, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing two Src homology 2 (SH2) domains
N-terminal to the catalytic tyr kinase domain. They are
involved in the signaling downstream of activated
receptors (including B-cell, T-cell, and Fc receptors)
that contain ITAMs (immunoreceptor tyr activation
motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. Syk is important in B-cell
receptor (BCR) signaling, while Zap-70 is primarily
expressed in T-cells and NK cells, and is a crucial
component in T-cell receptor (TCR) signaling. Syk also
plays a central role in Fc receptor-mediated
phagocytosis in the adaptive immune system. Shark is
exclusively expressed in ectodermally derived epithelia,
and is localized preferentially to the apical surface of
the epithelial cells, it may play a role in a signaling
pathway for epithelial cell polarity.
Length = 257
Score = 73.5 bits (181), Expect = 4e-14
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 24/200 (12%)
Query: 569 GKGAYGIVYKAY--DKNNKQY-VAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITM 625
G G +G V K K+ K+ VA+K + + RE + HP I+ +
Sbjct: 4 GHGNFGSVVKGVYLMKSGKEVEVAVK-TLKQEHIAAGKKEFLREASVMAQLD-HPCIVRL 61
Query: 626 LDIYKAVNNKDLYVVFEYME-NDLNKVIRDK-ILKDVHIRYIMFQLCNGLSYIHACKVMH 683
+ + K + L +V E L K ++ + + ++ + Q+ G++Y+ + +H
Sbjct: 62 IGVCKG---EPLMLVMELAPLGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVH 118
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSL-SDSKECLTEYIAT-------RWYRAPEILISN 735
RDL N+L+ KI D G++R+L + S Y AT +WY APE I+
Sbjct: 119 RDLAARNVLLVNRHQAKISDFGMSRALGAGS----DYYRATTAGRWPLKWY-APEC-INY 172
Query: 736 RRYTHHVDIWSLGCILAEML 755
+++ D+WS G L E
Sbjct: 173 GKFSSKSDVWSYGVTLWEAF 192
>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C delta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), delta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta
plays a role in cell cycle regulation and programmed
cell death in many cell types. It slows down cell
proliferation, inducing cell cycle arrest and enhancing
cell differentiation. PKC-delta is also involved in the
regulation of transcription as well as immune and
inflammatory responses. It plays a central role in the
genotoxic stress response that leads to DNA
damaged-induced apoptosis.
Length = 316
Score = 74.6 bits (183), Expect = 4e-14
Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 12/219 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG++G V A K +Y A+K + + D + T E L +P +
Sbjct: 4 GKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENP---FLTH 60
Query: 628 IYKAVNNKD-LYVVFEYMEN-DLNKVIRDKILKDVH-IRYIMFQLCNGLSYIHACKVMHR 684
+Y K+ L+ V E++ DL I+DK D++ + ++ GL ++H+ +++R
Sbjct: 61 LYCTFQTKEHLFFVMEFLNGGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGIIYR 120
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
DLK N+++D+ IKI D G+ + + + T Y APEIL +YT VD
Sbjct: 121 DLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEIL-QGLKYTFSVDW 179
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPH 783
WS G +L EML + F G + I R + PH
Sbjct: 180 WSFGVLLYEMLIGQSPFHGDDEDELFESI----RVDTPH 214
>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine
Kinase, C-ros. Protein Tyrosine Kinases (PTK) family;
C-ros and Drosophila Sevenless proteins; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The
proto-oncogene c-ros encodes an orphan receptor tyr
kinase (RTK) with an unknown ligand. RTKs contain an
extracellular ligand-binding domain, a transmembrane
region, and an intracellular tyr kinase domain. RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. C-ros is
expressed in embryonic cells of the kidney, intestine
and lung, but disappears soon after birth. It persists
only in the adult epididymis. Male mice bearing inactive
mutations of c-ros lack the initial segment of the
epididymis and are infertile. The Drosophila protein,
Sevenless, is required for the specification of the R7
photoreceptor cell during eye development.
Length = 269
Score = 73.7 bits (181), Expect = 4e-14
Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 53/282 (18%)
Query: 569 GKGAYGIVYKA------YDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQ----- 617
G GA+G VY+ + VA+K + + TD ++ FLK
Sbjct: 4 GSGAFGEVYEGTATDILGPGSGPIRVAVKTLR---KGATDQEK----KEFLKEAHLMSNF 56
Query: 618 RHPNIITMLDIYKAVNNKDLYVVFEYME-NDLNKVIRDK--------ILKDVHIRYIMFQ 668
HPNI+ +L + + N+ Y++ E ME DL +RD +L + I
Sbjct: 57 NHPNIVKLLGV--CLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLD 114
Query: 669 LCNGLSYIHACKVMHRDLKPSNILI---DKSCS--IKIGDLGLARSLSDSKECLTE---Y 720
+ G Y+ +HRDL N L+ +KIGD GLAR + S E
Sbjct: 115 VAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGL 174
Query: 721 IATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQ--SKPLFPGASTSHQLQLIVNLVR 778
+ RW APE L+ ++T D+WS G ++ E+L +P +P + LQ + R
Sbjct: 175 LPVRWM-APESLLDG-KFTTQSDVWSFGVLMWEILTLGQQP-YPALNNQEVLQHVTAGGR 231
Query: 779 PNPPH--ADKFYAGF-----KSKHEREKFNQVVVKCQKELQE 813
P DK Y + ER F+ + Q+ LQ
Sbjct: 232 LQKPENCPDKIYQLMTNCWAQDPSERPTFD----RIQEILQN 269
>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase,
Abelson kinase. Protein Tyrosine Kinase (PTK) family;
Abelson (Abl) kinase; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Abl (or
c-Abl) is a ubiquitously-expressed cytoplasmic (or
nonreceptor) tyr kinase that contains SH3, SH2, and tyr
kinase domains in its N-terminal region, as well as
nuclear localization motifs, a putative DNA-binding
domain, and F- and G-actin binding domains in its
C-terminal tail. It also contains a short autoinhibitory
cap region in its N-terminus. Abl is normally inactive
and requires phosphorylation and myristoylation for
activation. Abl function depends on its subcellular
localization. In the cytoplasm, Abl plays a role in cell
proliferation and survival. In response to DNA damage or
oxidative stress, Abl is transported to the nucleus
where it induces apoptosis. In chronic myelogenous
leukemia (CML) patients, an aberrant translocation
results in the replacement of the first exon of Abl with
the BCR (breakpoint cluster region) gene. The resulting
BCR-Abl fusion protein is constitutively active and
associates into tetramers, resulting in a hyperactive
kinase sending a continuous signal. This leads to
uncontrolled proliferation, morphological transformation
and anti-apoptotic effects. BCR-Abl is the target of
selective inhibitors, such as imatinib (Gleevec), used
in the treatment of CML. Abl2, also known as ARG
(Abelson-related gene), is thought to play a cooperative
role with Abl in the proper development of the nervous
system. The Tel-ARG fusion protein, resulting from
reciprocal translocation between chromosomes 1 and 12,
is associated with acute myeloid leukemia (AML). The TEL
gene is a frequent fusion partner of other tyr kinase
oncogenes, including Tel/Abl, Tel/PDGFRbeta, and
Tel/Jak2, found in patients with leukemia and
myeloproliferative disorders.
Length = 263
Score = 73.3 bits (180), Expect = 4e-14
Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 25/228 (10%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTY---REILFLKSFQRHPNII 623
K G G YG VY+ K VA+K + K D +E +K +HPN++
Sbjct: 13 KLGGGQYGEVYEGVWKKYSLTVAVKTL------KEDTMEVEEFLKEAAVMKEI-KHPNLV 65
Query: 624 TMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRD---KILKDVHIRYIMFQLCNGLSYIHAC 679
+L + Y++ E+M +L +R+ + + V + Y+ Q+ + + Y+
Sbjct: 66 QLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK 123
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRW---YRAPEILISNR 736
+HRDL N L+ ++ +K+ D GL+R ++ + T + ++ + APE L N
Sbjct: 124 NFIHRDLAARNCLVGENHLVKVADFGLSRLMTG--DTYTAHAGAKFPIKWTAPESLAYN- 180
Query: 737 RYTHHVDIWSLGCILAEMLQ--SKPLFPGASTSHQLQLIVNLVRPNPP 782
+++ D+W+ G +L E+ P +PG S +L+ R P
Sbjct: 181 KFSIKSDVWAFGVLLWEIATYGMSP-YPGIDLSQVYELLEKGYRMERP 227
>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 6. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK6
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK6 is widely expressed in many tissues.
t is expressed as multiple splice variants with
different domain architectures. It is
post-translationally palmitoylated and localized in the
membrane. GRK6 plays important roles in the regulation
of dopamine, M3 muscarinic, opioid, and chemokine
receptor signaling. It also plays maladaptive roles in
addiction and Parkinson's disease. GRK6-deficient mice
exhibit altered dopamine receptor regulation, decreased
lymphocyte chemotaxis, and increased acute inflammation
and neutrophil chemotaxis.
Length = 285
Score = 73.5 bits (180), Expect = 5e-14
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 668 QLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYR 727
++C GL +H ++++RDLKP NIL+D I+I DLGLA + + + + + T Y
Sbjct: 110 EICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG-QTIKGRVGTVGYM 168
Query: 728 APEILISNRRYTHHVDIWSLGCILAEMLQSKPLF 761
APE+ + N RYT D W+LGC+L EM+ + F
Sbjct: 169 APEV-VKNERYTFSPDWWALGCLLYEMIAGQSPF 201
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 76.4 bits (188), Expect = 7e-14
Identities = 59/208 (28%), Positives = 92/208 (44%), Gaps = 34/208 (16%)
Query: 586 QYVAIKKIFEAFRNKTDAQRTYREILFLKSFQR---------HPNIITMLDIYKAVNNKD 636
VAIK + +TDA + F+R HPNI+ +LD +A
Sbjct: 4 HEVAIKLL------RTDAPEEEHQR---ARFRRETALCARLYHPNIVALLDSGEAPPGL- 53
Query: 637 LYVVFEYMEN-DLNKVIR-DKILKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILI- 693
L+ VFEY+ L +V+ D L +M Q+ + L+ H ++HRDLKP NI++
Sbjct: 54 LFAVFEYVPGRTLREVLAADGALPAGETGRLMLQVLDALACAHNQGIVHRDLKPQNIMVS 113
Query: 694 ---DKSCSIKIGDLGLARSLSDSKECL-------TEYIATRWYRAPEILISNRRYTHHVD 743
+ + K+ D G+ L ++ TE + T Y APE L T + D
Sbjct: 114 QTGVRPHA-KVLDFGIGTLLPGVRDADVATLTRTTEVLGTPTYCAPEQL-RGEPVTPNSD 171
Query: 744 IWSLGCILAEMLQSKPLFPGASTSHQLQ 771
+++ G I E L + + GAS + L
Sbjct: 172 LYAWGLIFLECLTGQRVVQGASVAEILY 199
>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 4. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK4
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK4 has a limited tissue distribution. It
is mainly found in the testis, but is also present in
the cerebellum and kidney. It is expressed as multiple
splice variants with different domain architectures. It
is post-translationally palmitoylated and localized in
the membrane. GRK4 polymorphisms are associated with
hypertension and salt sensitivity, as they cause
hyperphosphorylation, desensitization, and
internalization of the dopamine 1 (D1) receptor while
increasing the expression of the angiotensin II type 1
receptor. GRK4 plays a crucial role in the D1 receptor
regulation of sodium excretion and blood pressure.
Length = 285
Score = 73.1 bits (179), Expect = 8e-14
Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 668 QLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYR 727
+LC GL + ++++RDLKP NIL+D I+I DLGLA + + E + + T Y
Sbjct: 110 ELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEG-ETVRGRVGTVGYM 168
Query: 728 APEILISNRRYTHHVDIWSLGCILAEMLQSKPLF 761
APE+ I+N +YT D W LGC++ EM+Q + F
Sbjct: 169 APEV-INNEKYTFSPDWWGLGCLIYEMIQGQSPF 201
>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine
Kinases, Class EphA Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
most class EphA receptors including EphA3, EphA4, EphA5,
and EphA7, but excluding EphA1, EphA2 and EphA10;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. One exception is EphA4, which also
binds ephrins-B2/B3. EphRs contain an ephrin-binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). Ephrin/EphR interaction mainly results in
cell-cell repulsion or adhesion, making it important in
neural development and plasticity, cell morphogenesis,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis. EphARs and ephrin-A
ligands are expressed in multiple areas of the
developing brain, especially in the retina and tectum.
They are part of a system controlling retinotectal
mapping.
Length = 267
Score = 72.6 bits (178), Expect = 9e-14
Identities = 68/236 (28%), Positives = 108/236 (45%), Gaps = 27/236 (11%)
Query: 587 YVAIKKIFEAFRNKTDAQRT--YREILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYM 644
VAIK + + T+ QR E + F HPNII + + +K + +V EYM
Sbjct: 34 PVAIKTLKAGY---TEKQRRDFLSEASIMGQFD-HPNIIHLEGV--VTKSKPVMIVTEYM 87
Query: 645 EN-DLNKVIR--DKILKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKI 701
EN L+ +R D + + ++ + +G+ Y+ +HRDL NIL++ + K+
Sbjct: 88 ENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKV 147
Query: 702 GDLGLARSLSDSKECLTEY----IATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQ- 756
D GL+R L D E I RW APE I+ R++T D+WS G ++ E++
Sbjct: 148 SDFGLSRVLEDDPEAAYTTRGGKIPIRW-TAPEA-IAYRKFTSASDVWSYGIVMWEVMSY 205
Query: 757 -SKPLFPGASTSHQLQLIVNLVRPNPP-------HADKFYAGFKSKHEREKFNQVV 804
+P + S ++ I R P H K ++ER KF Q+V
Sbjct: 206 GERPYWE-MSNQDVIKAIEEGYRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIV 260
>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase A. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase A
(TrkA); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkA is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkA
to its ligand, nerve growth factor (NGF), results in
receptor oligomerization and activation of the catalytic
domain. TrkA is expressed mainly in neural-crest-derived
sensory and sympathetic neurons of the peripheral
nervous system, and in basal forebrain cholinergic
neurons of the central nervous system. It is critical
for neuronal growth, differentiation and survival.
Alternative TrkA splicing has been implicated as a
pivotal regulator of neuroblastoma (NB) behavior. Normal
TrkA expression is associated with better NB prognosis,
while the hypoxia-regulated TrkAIII splice variant
promotes NB pathogenesis and progression. Aberrant TrkA
expression has also been demonstrated in non-neural
tumors including prostate, breast, lung, and pancreatic
cancers.
Length = 280
Score = 72.7 bits (178), Expect = 1e-13
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 42/217 (19%)
Query: 569 GKGAYGIVYKAYDKN-----NKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNII 623
G+GA+G V+ A N +K VA+K + EA +++ Q RE L Q H +I+
Sbjct: 14 GEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTVLQ-HQHIV 70
Query: 624 TMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRD-----KIL---KDV--------HIRYIM 666
+ + L +VFEYM + DLN+ +R KIL +DV + I
Sbjct: 71 RFYGV--CTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIA 128
Query: 667 FQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY------ 720
Q+ +G+ Y+ + +HRDL N L+ + +KIGD G++R + T+Y
Sbjct: 129 SQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYS-----TDYYRVGGR 183
Query: 721 --IATRWYRAPEILISNRRYTHHVDIWSLGCILAEML 755
+ RW IL R++T DIWS G +L E+
Sbjct: 184 TMLPIRWMPPESILY--RKFTTESDIWSFGVVLWEIF 218
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 73.1 bits (179), Expect = 1e-13
Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 12/240 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG +G V +K +Y A+K + E K + T E L++ RHP +T L
Sbjct: 4 GKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQN-SRHP-FLTALK 61
Query: 628 IYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACK-VMHR 684
Y + L V EY + R+++ + R+ ++ + L Y+H+ K V++R
Sbjct: 62 -YSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYR 120
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
DLK N+++DK IKI D GL + + + T Y APE+L N Y VD
Sbjct: 121 DLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDN-DYGRAVDW 179
Query: 745 WSLGCILAEMLQSKPLFPGASTSHQLQLI----VNLVRPNPPHADKFYAGFKSKHEREKF 800
W LG ++ EM+ + F +LI + R P A +G K +++
Sbjct: 180 WGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLSGLLKKDPKQRL 239
>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional.
Length = 357
Score = 73.8 bits (181), Expect = 1e-13
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 31/195 (15%)
Query: 606 TYREILFLKSFQRHPNIITMLD--IYKAVN-------NKDLYVVFEYMENDLNKVIRDKI 656
T E + L++ HP++I M D + A+ + DLY Y+ + D+
Sbjct: 104 TLIEAMLLQNVN-HPSVIRMKDTLVSGAITCMVLPHYSSDLYT---YLTKRSRPLPIDQA 159
Query: 657 LKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKEC 716
L I Q+ GL Y+HA +++HRD+K NI I+ + IGDLG A+ +
Sbjct: 160 L------IIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAF 213
Query: 717 LTEYIATRWYRAPEILISNRRYTHHVDIWSLGCILAEML----------QSKPLFPGAST 766
L T APE+L + +Y DIWS G +L EML S P S
Sbjct: 214 LG-LAGTVETNAPEVL-ARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSC 271
Query: 767 SHQLQLIVNLVRPNP 781
L I++ ++ +P
Sbjct: 272 HSHLLKIISTLKVHP 286
>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 5. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK5
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK5 is widely expressed in many tissues.
It associates with the membrane though an N-terminal
PIP2 binding domain and also binds phospholipids via its
C-terminus. GRK5 deficiency is associated with early
Alzheimer's disease in humans and mouse models. GRK5
also plays a crucial role in the pathogenesis of
sporadic Parkinson's disease. It participates in the
regulation and desensitization of PDGFRbeta, a receptor
tyrosine kinase involved in a variety of downstream
cellular effects including cell growth, chemotaxis,
apoptosis, and angiogenesis. GRK5 also regulates
Toll-like receptor 4, which is involved in innate and
adaptive immunity.
Length = 285
Score = 72.3 bits (177), Expect = 2e-13
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 668 QLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYR 727
++ GL +H ++RDLKP NIL+D I+I DLGLA + + E + + T Y
Sbjct: 110 EILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEG-ESIRGRVGTVGYM 168
Query: 728 APEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPG 763
APE+ ++N+RYT D W LGC++ EM++ + F G
Sbjct: 169 APEV-LNNQRYTLSPDYWGLGCLIYEMIEGQSPFRG 203
>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase,
Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK)
family; Focal Adhesion Kinase (FAK); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FAK is a
cytoplasmic (or nonreceptor) tyr kinase that contains an
autophosphorylation site and a FERM domain at the
N-terminus, a central tyr kinase domain, proline-rich
regions, and a C-terminal FAT (focal adhesion targeting)
domain. FAK activity is dependent on integrin-mediated
cell adhesion, which facilitates N-terminal
autophosphorylation. Full activation is achieved by the
phosphorylation of its two adjacent A-loop tyrosines.
FAK is important in mediating signaling initiated at
sites of cell adhesions and at growth factor receptors.
Through diverse molecular interactions, FAK functions as
a biosensor or integrator to control cell motility. It
is a key regulator of cell survival, proliferation,
migration and invasion, and thus plays an important role
in the development and progression of cancer. Src binds
to autophosphorylated FAK forming the FAK-Src dual
kinase complex, which is activated in a wide variety of
tumor cells and generates signals promoting growth and
metastasis. FAK is being developed as a target for
cancer therapy.
Length = 270
Score = 71.7 bits (176), Expect = 2e-13
Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 32/223 (14%)
Query: 555 DREDLQQQINLLKE--GKGAYGIVYKAY---DKNNKQYVAIKKIFEAFRNKTDAQRTYRE 609
RED+ L G+G +G VY+ +N K VA+K + + + ++ +E
Sbjct: 4 QREDIT-----LGRCIGEGQFGDVYQGVYMSPENEKIAVAVK-TCKNCTSPSVREKFLQE 57
Query: 610 ILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFE-YMENDLNKVIRDKILKDVHIRYIMF- 667
++ F HP+I+ ++ + + +++V E +L ++ I++
Sbjct: 58 AYIMRQF-DHPHIVKLIGV---ITENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYS 113
Query: 668 -QLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATR-- 724
QL L+Y+ + + +HRD+ N+L+ +K+GD GL+R L D + Y A++
Sbjct: 114 YQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDE----SYYKASKGK 169
Query: 725 ----WYRAPEILISNRRYTHHVDIWSLGCILAE--MLQSKPLF 761
W APE I+ RR+T D+W G + E ML KP
Sbjct: 170 LPIKWM-APES-INFRRFTSASDVWMFGVCMWEILMLGVKPFQ 210
>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 1. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK1
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK1, also called rhodopsin kinase,
belongs to the visual group of GRKs and is expressed in
retinal cells. It phosphorylates rhodopsin in rod cells,
which leads to termination of the phototransduction
cascade. Mutations in GRK1 are associated to a
recessively inherited form of stationary nightblindness
called Oguchi disease.
Length = 280
Score = 71.8 bits (176), Expect = 2e-13
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 668 QLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYR 727
Q+ +GL ++H ++++RDLKP N+L+D +++I DLGLA L D + Y T +
Sbjct: 105 QIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFM 164
Query: 728 APEILISNRRYTHHVDIWSLGCILAEMLQSKPLF 761
APE+L Y VD ++LG L EM+ ++ F
Sbjct: 165 APELL-QGEEYDFSVDYFALGVTLYEMIAARGPF 197
>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 3. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 3 (FGFR3); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR3 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Many FGFR3 splice
variants have been reported with the IIIb and IIIc
isoforms being the predominant forms. FGFR3 IIIc is the
isoform expressed in chondrocytes, the cells affected in
dwarfism, while IIIb is expressed in epithelial cells.
FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and
FGF23. It is a negative regulator of long bone growth.
In the cochlear duct and in the lens, FGFR3 is involved
in differentiation while it appears to have a role in
cell proliferation in epithelial cells. Germline
mutations in FGFR3 are associated with skeletal
disorders including several forms of dwarfism. Some
missense mutations are associated with multiple myeloma
and carcinomas of the bladder and cervix. Overexpression
of FGFR3 is found in thyroid carcinoma.
Length = 334
Score = 72.7 bits (178), Expect = 2e-13
Identities = 64/242 (26%), Positives = 104/242 (42%), Gaps = 32/242 (13%)
Query: 569 GKGAYGIVYKA------YDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNI 622
G+G +G V A DK NK K+ + D E+ +K +H NI
Sbjct: 21 GEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNI 80
Query: 623 ITMLDIYKAVNNKDLYVVFEYM-ENDLNKVIR-----------------DKILKDVHIRY 664
I +L + LYV+ EY + +L + +R ++ L +
Sbjct: 81 INLLG--ACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVS 138
Query: 665 IMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSD---SKECLTEYI 721
+Q+ G+ Y+ + K +HRDL N+L+ + +KI D GLAR + + K+ +
Sbjct: 139 CAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRL 198
Query: 722 ATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPL-FPGASTSHQLQLIVNLVRPN 780
+W APE L +R YTH D+WS G +L E+ +PG +L+ R +
Sbjct: 199 PVKWM-APEALF-DRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMD 256
Query: 781 PP 782
P
Sbjct: 257 KP 258
>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 1. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 1 (FGFR1); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR1 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Alternative splicing of
FGFR1 transcripts produces a variety of isoforms, which
are differentially expressed in cells. FGFR1 binds the
ligands, FGF1 and FGF2, with high affinity and has also
been reported to bind FGF4, FGF6, and FGF9. FGFR1
signaling is critical in the control of cell migration
during embryo development. It promotes cell
proliferation in fibroblasts. Nuclear FGFR1 plays a role
in the regulation of transcription. Mutations,
insertions or deletions of FGFR1 have been identified in
patients with Kallman's syndrome (KS), an inherited
disorder characterized by hypogonadotropic hypogonadism
and loss of olfaction. Aberrant FGFR1 expression has
been found in some human cancers including 8P11
myeloproliferative syndrome (EMS), breast cancer, and
pancreatic adenocarcinoma.
Length = 307
Score = 72.4 bits (177), Expect = 2e-13
Identities = 69/272 (25%), Positives = 117/272 (43%), Gaps = 41/272 (15%)
Query: 569 GKGAYGIVYKA------YDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNI 622
G+G +G V A +K N+ K+ ++ + D E+ +K +H NI
Sbjct: 27 GEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNI 86
Query: 623 ITMLDIYKAVNNKDLYVVFEYM-ENDLNKVIR-----------------DKILKDVHIRY 664
I +L + LYV+ EY + +L + +R ++ L +
Sbjct: 87 INLLG--ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVS 144
Query: 665 IMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSD---SKECLTEYI 721
+Q+ G+ Y+ + K +HRDL N+L+ + +KI D GLAR + K+ +
Sbjct: 145 CAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRL 204
Query: 722 ATRWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPGASTSHQLQLIVNLVRP 779
+W APE L +R YTH D+WS G +L E+ L P +PG +L+ R
Sbjct: 205 PVKWM-APEALF-DRIYTHQSDVWSFGVLLWEIFTLGGSP-YPGVPVEELFKLLKEGHRM 261
Query: 780 NPPH--ADKFYAGFKS-----KHEREKFNQVV 804
+ P ++ Y + +R F Q+V
Sbjct: 262 DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLV 293
>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein
Serine/Threonine Kinase, beta-adrenergic receptor
kinase. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily,
beta-adrenergic receptor kinase (beta-ARK) group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. The beta-ARK
group is composed of GRK2, GRK3, and similar proteins.
GRK2 and GRK3 are both widely expressed in many tissues,
although GRK2 is present at higher levels. They contain
an N-terminal RGS homology (RH) domain, a central
catalytic domain, and C-terminal pleckstrin homology
(PH) domain that mediates PIP2 and G protein
betagamma-subunit translocation to the membrane. GRK2
(also called beta-ARK or beta-ARK1) is important in
regulating several cardiac receptor responses. It plays
a role in cardiac development and in hypertension.
Deletion of GRK2 in mice results in embryonic lethality,
caused by hypoplasia of the ventricular myocardium. GRK2
also plays important roles in the liver (as a regulator
of portal blood pressure), in immune cells, and in the
nervous system. Altered GRK2 expression has been
reported in several disorders including major
depression, schizophrenia, bipolar disorder, and
Parkinsonism.
Length = 278
Score = 71.9 bits (176), Expect = 2e-13
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 11/210 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTY----REILFLKSFQRHPNIIT 624
G+G +G VY + + A+K + R K T R +L L S P I+
Sbjct: 3 GRGGFGEVYGCRKADTGKMYAMK-CLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 61
Query: 625 MLDIYKAVNNKDLYVVFEYMEN-DLN-KVIRDKILKDVHIRYIMFQLCNGLSYIHACKVM 682
M Y L + + M DL+ + + + + +R+ ++ GL ++H V+
Sbjct: 62 M--SYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRFVV 119
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
+RDLKP+NIL+D+ ++I DLGLA S K + + T Y APE+L Y
Sbjct: 120 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS--VGTHGYMAPEVLQKGVAYDSSA 177
Query: 743 DIWSLGCILAEMLQSKPLFPGASTSHQLQL 772
D +SLGC+L ++L+ F T + ++
Sbjct: 178 DWFSLGCMLFKLLRGHSPFRQHKTKDKHEI 207
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth
Factor Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR) subfamily; catalytic (c) domain. EGFR
(HER, ErbB) subfamily members include EGFR (HER1,
ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
The EGFR proteins are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to
their activation. Instead, they are activated by
ligand-induced dimerization, resulting in the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Collectively, they can recognize a variety of
ligands including EGF, TGFalpha, and neuregulins, among
others. All four subfamily members can form homo- or
heterodimers. HER3 contains an impaired kinase domain
and depends on its heterodimerization partner for
activation. EGFR subfamily members are involved in
signaling pathways leading to a broad range of cellular
responses including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. Gain of
function alterations, through their overexpression,
deletions, or point mutations in their kinase domains,
have been implicated in various cancers. These receptors
are targets of many small molecule inhibitors and
monoclonal antibodies used in cancer therapy.
Length = 279
Score = 71.7 bits (176), Expect = 2e-13
Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 31/204 (15%)
Query: 569 GKGAYGIVYKAY----DKNNKQYVAIKKIFEAFRNKTDAQRTYREIL---FLKSFQRHPN 621
G GA+G VYK + K VAIK + R +T + +EIL ++ + HP+
Sbjct: 16 GSGAFGTVYKGVWIPEGEKVKIPVAIKVL----REETSPK-ANKEILDEAYVMASVDHPH 70
Query: 622 IITMLDIYKAVNNKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIMFQLCNGLSYIH 677
++ +L I + + ++ + M D + +D I ++ Q+ G+SY+
Sbjct: 71 VVRLLGICLS---SQVQLITQLMPLGCLLDYVRNHKDNI-GSQYLLNWCVQIAKGMSYLE 126
Query: 678 ACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIAT------RWYRAPEI 731
+++HRDL N+L+ +KI D GLA+ L D E EY A +W A E
Sbjct: 127 EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLL-DVDE--KEYHAEGGKVPIKWM-ALES 182
Query: 732 LISNRRYTHHVDIWSLGCILAEML 755
I +R YTH D+WS G + E++
Sbjct: 183 -ILHRIYTHKSDVWSYGVTVWELM 205
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase. Serine/Threonine Kinases
(STKs), Rho-associated coiled-coil containing protein
kinase (ROCK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The ROCK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. ROCK is also referred to as Rho-associated
kinase or simply as Rho kinase. It contains an
N-terminal extension, a catalytic kinase domain, and a
long C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain. It is activated via interaction with Rho GTPases
and is involved in many cellular functions including
contraction, adhesion, migration, motility,
proliferation, and apoptosis. The ROCK subfamily
consists of two isoforms, ROCK1 and ROCK2, which may be
functionally redundant in some systems, but exhibit
different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is
more prominent in brain and skeletal muscle while ROCK1
is more pronounced in the liver, testes, and kidney.
Studies in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 72.9 bits (179), Expect = 2e-13
Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 28/236 (11%)
Query: 547 KSIDQLMKDREDLQQQINLLKE-----------GKGAYGIVYKAYDKNNKQYVAIKKI-- 593
K+ID + E ++I L+ G+GA+G V K++KQ A+K +
Sbjct: 19 KNIDNFLSRYEKAAEKITKLRMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSK 78
Query: 594 FEAFRNKTDAQRTY--REILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNK 650
FE + ++D+ + R+I+ + I+ + Y ++K LY+V EYM DL
Sbjct: 79 FEMIK-RSDSAFFWEERDIM---AHANSEWIVQLH--YAFQDDKYLYMVMEYMPGGDLVN 132
Query: 651 VIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSL 710
++ + + + R+ ++ L IH+ +HRD+KP N+L+DKS +K+ D G +
Sbjct: 133 LMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKM 192
Query: 711 SDSK--ECLTEYIATRWYRAPEILISNR---RYTHHVDIWSLGCILAEMLQSKPLF 761
+ C T + T Y +PE+L S Y D WS+G L EML F
Sbjct: 193 DANGMVRCDTA-VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPF 247
>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C.
Serine/Threonine Kinases (STKs), Classical (or
Conventional) Protein Kinase C (cPKC) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. cPKCs contain a
calcium-binding C2 region in their regulatory domain.
There are four cPKC isoforms, named alpha, betaI,
betaII, and gamma. cPKCs are potent kinases for
histones, myelin basic protein, and protamine. PKC-gamma
is mainly expressed in neuronal tissues. It plays a role
in protection from ischemia.
Length = 324
Score = 72.1 bits (177), Expect = 3e-13
Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 12/201 (5%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIK---KIFEAFRNKTDAQRTYREILFLKSFQRHPNIITM 625
GKG++G V A K + AIK K + + + +L L P +T
Sbjct: 9 GKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPG---KPPFLTQ 65
Query: 626 LDIYKAVNNKD-LYVVFEYMEN-DLNKVIRD-KILKDVHIRYIMFQLCNGLSYIHACKVM 682
L + D LY V EY+ DL I+ K+ H + ++ GL ++H+ ++
Sbjct: 66 L--HSCFQTMDRLYFVMEYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGII 123
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
+RDLK N+++D IKI D G+ + + + T Y APEI I+ + Y V
Sbjct: 124 YRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEI-IAYQPYGKSV 182
Query: 743 DIWSLGCILAEMLQSKPLFPG 763
D W+ G +L EML +P F G
Sbjct: 183 DWWAFGVLLYEMLAGQPPFDG 203
>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related
(NDR) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The NDR subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. NDR kinases
regulate mitosis, cell growth, embryonic development,
and neurological processes. They are also required for
proper centrosome duplication. Higher eukaryotes contain
two NDR isoforms, NDR1 and NDR2. This subfamily also
contains fungal NDR-like kinases.
Length = 364
Score = 72.4 bits (178), Expect = 3e-13
Identities = 58/250 (23%), Positives = 99/250 (39%), Gaps = 49/250 (19%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEA---FRNKTDAQRTYREILFLKSFQRHPNIITM 625
G+GA+G V K+ A+KK+ ++ + + R R+IL + +P ++ +
Sbjct: 10 GRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDIL---AEADNPWVVKL 66
Query: 626 LDIYKAVNNKDLYVVFEYMEN-DL-NKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMH 683
Y + LY++ EY+ D+ +++ + R+ + + + IH +H
Sbjct: 67 Y--YSFQDENYLYLIMEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIH 124
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLS---------------------------DSKEC 716
RD+KP N+L+D IK+ D GL L SK
Sbjct: 125 RDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRK 184
Query: 717 LTEY-----------IATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGAS 765
+ + T Y APE+ + Y D WSLG I+ EML P F +
Sbjct: 185 AETWKRNRRALAYSTVGTPDYIAPEVFLQT-GYNKECDWWSLGVIMYEMLVGYPPFCSDN 243
Query: 766 TSHQLQLIVN 775
+ I+N
Sbjct: 244 PQETYRKIIN 253
>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase C. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase C
(TrkC); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkC is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkC
to its ligand, neurotrophin 3 (NT3), results in receptor
oligomerization and activation of the catalytic domain.
TrkC is broadly expressed in the nervous system and in
some non-neural tissues including the developing heart.
NT3/TrkC signaling plays an important role in the
innervation of the cardiac conducting system and the
development of smooth muscle cells. Mice deficient with
NT3 and TrkC have multiple heart defects. NT3/TrkC
signaling is also critical for the development and
maintenance of enteric neurons that are important for
the control of gut peristalsis.
Length = 291
Score = 71.2 bits (174), Expect = 3e-13
Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 49/228 (21%)
Query: 569 GKGAYGIVYKA--YD---KNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNII 623
G+GA+G V+ A Y+ +K VA+K A ++ T A R K FQR ++
Sbjct: 14 GEGAFGKVFLAECYNLSPTKDKMLVAVK----ALKDPTLAAR--------KDFQREAELL 61
Query: 624 TMLD------IYKAVNNKD-LYVVFEYMEN-DLNKVIRDK-----ILKDVHIR------- 663
T L Y + D L +VFEYM++ DLNK +R IL D R
Sbjct: 62 TNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELG 121
Query: 664 -----YIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLT 718
+I Q+ +G+ Y+ + +HRDL N L+ + +KIGD G++R + +
Sbjct: 122 LSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRV 181
Query: 719 ---EYIATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQ--SKPLF 761
+ RW P I R++T D+WS G IL E+ +P F
Sbjct: 182 GGHTMLPIRW--MPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWF 227
>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase
1-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Yeast protein kinase 1
(YPK1)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YPK1-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
fungal proteins with similarity to the AGC STKs,
Saccharomyces cerevisiae YPK1 and Schizosaccharomyces
pombe Gad8p. YPK1 is required for cell growth and acts
as a downstream kinase in the sphingolipid-mediated
signaling pathway of yeast. It also plays a role in
efficient endocytosis and in the maintenance of cell
wall integrity. Gad8p is a downstream target of Tor1p,
the fission yeast homolog of mTOR. It plays a role in
cell growth and sexual development.
Length = 312
Score = 71.5 bits (175), Expect = 4e-13
Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 9/197 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAF-RNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG++G V + ++ ++ A+K I +A ++++ T E L P I+ +
Sbjct: 2 GKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVN-CPFIVPLKF 60
Query: 628 IYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
+++ + LY+V ++ + + R+ R+ +L L +H V++RD
Sbjct: 61 SFQS--PEKLYLVLAFINGGELFHHLQREGRFDLSRARFYTAELLCALENLHKFNVIYRD 118
Query: 686 LKPSNILIDKSCSIKIGDLGLAR-SLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDI 744
LKP NIL+D I + D GL + ++ D + T + T Y APE L+ YT VD
Sbjct: 119 LKPENILLDYQGHIALCDFGLCKLNMKDDDKTNT-FCGTPEYLAPE-LLLGHGYTKAVDW 176
Query: 745 WSLGCILAEMLQSKPLF 761
W+LG +L EML P F
Sbjct: 177 WTLGVLLYEMLTGLPPF 193
>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Human Fyn-related kinase (Frk) and similar
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Frk and
Srk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Frk, also known as Rak, is specifically
expressed in liver, lung, kidney, intestine, mammary
glands, and the islets of Langerhans. Rodent homologs
were previously referred to as GTK (gastrointestinal tyr
kinase), BSK (beta-cell Src-like kinase), or IYK
(intestinal tyr kinase). Studies in mice reveal that Frk
is not essential for viability. It plays a role in the
signaling that leads to cytokine-induced beta-cell death
in Type I diabetes. It also regulates beta-cell number
during embryogenesis and early in life.
Length = 261
Score = 70.5 bits (173), Expect = 4e-13
Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 42/242 (17%)
Query: 562 QINLLKE-GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQ--- 617
I LL++ G G +G V++ NN VA+K + + D FL Q
Sbjct: 7 SIQLLRKLGAGQFGEVWEGL-WNNTTPVAVKTLKPGTMDPKD---------FLAEAQIMK 56
Query: 618 --RHPNIITMLDIYKAVNNKD--LYVVFEYMEN----DLNKVIRDKILKDVHIRYIMFQL 669
RHP +I + AV + +Y+V E M+ + + + LK + + Q+
Sbjct: 57 KLRHPKLIQLY----AVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQV 112
Query: 670 CNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIAT------ 723
+G++Y+ A +HRDL N+L+ ++ K+ D GLAR + + Y A
Sbjct: 113 ASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKED-----IYEAREGAKFP 167
Query: 724 -RWYRAPEILISNRRYTHHVDIWSLGCILAEMLQ-SKPLFPGASTSHQLQLIVNLVR-PN 780
+W APE + N R++ D+WS G +L E++ + +PG + + LQ + R P
Sbjct: 168 IKW-TAPEAALYN-RFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYRMPC 225
Query: 781 PP 782
PP
Sbjct: 226 PP 227
>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine
Kinases, Tyrosine kinase expressed in hepatocellular
carcinoma and Resting lymphocyte kinase. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase expressed
in hepatocellular carcinoma (Tec) and Resting lymphocyte
kinase (Rlk); catalytic (c) domain. The PTKc family is
part of a larger superfamily, that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tec and
Rlk (also named Txk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. Instead of PH, Rlk
contains an N-terminal cysteine-rich region. In addition
to PH, Tec also contains the Tec homology (TH) domain
with proline-rich and zinc-binding regions. Tec kinases
are expressed mainly by haematopoietic cells. Tec is
more widely-expressed than other Tec subfamily kinases.
It is found in endothelial cells, both B- and T-cells,
and a variety of myeloid cells including mast cells,
erythroid cells, platelets, macrophages and neutrophils.
Rlk is expressed in T-cells and mast cell lines. Tec and
Rlk are both key components of T-cell receptor (TCR)
signaling. They are important in TCR-stimulated
proliferation, IL-2 production and phopholipase C-gamma1
activation.
Length = 256
Score = 70.7 bits (173), Expect = 4e-13
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 29/206 (14%)
Query: 562 QINLLKE-GKGAYGIVYKAYDKNNKQY-VAIKKIFEAFRNKTDAQRTYREILFLKSFQRH 619
++ +KE G G +G+V+ K Q VAIK I E ++ D + ++ L H
Sbjct: 5 ELTFMKELGSGQFGVVHLG--KWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLS----H 58
Query: 620 PNIITMLDIYKAVNNKDLYVVFEYMEND--LN--KVIRDKILKDVHIRYIMFQLCNGLSY 675
P ++ + + K LY+V E+MEN LN + + K+ KD+ + + +C G+ Y
Sbjct: 59 PKLVQLYGV--CTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLS-MCQDVCEGMEY 115
Query: 676 IHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIAT-------RWYRA 728
+ +HRDL N L+ + +K+ D G+ R + D EY ++ +W
Sbjct: 116 LERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDD-----EYTSSSGAKFPVKW-SP 169
Query: 729 PEILISNRRYTHHVDIWSLGCILAEM 754
PE+ + +Y+ D+WS G ++ E+
Sbjct: 170 PEVFNFS-KYSSKSDVWSFGVLMWEV 194
>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C zeta.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, zeta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-zeta plays a critical role in activating the glucose
transport response. It is activated by glucose, insulin,
and exercise through diverse pathways. PKC-zeta also
plays a central role in maintaining cell polarity in
yeast and mammalian cells. In addition, it affects actin
remodeling in muscle cells.
Length = 327
Score = 71.6 bits (175), Expect = 4e-13
Identities = 51/196 (26%), Positives = 93/196 (47%), Gaps = 6/196 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
G+G+Y V K N Q A+K + E + D E + +P ++ +
Sbjct: 4 GRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHS 63
Query: 628 IYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
++ + L++V EY+ + + R + L + H R+ ++C L+++H +++RD
Sbjct: 64 CFQTTSR--LFLVIEYVNGGDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYRD 121
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LK N+L+D IK+ D G+ + + + + T Y APEIL Y VD W
Sbjct: 122 LKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEIL-RGEEYGFSVDWW 180
Query: 746 SLGCILAEMLQSKPLF 761
+LG ++ EM+ + F
Sbjct: 181 ALGVLMFEMMAGRSPF 196
>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 2. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK2 was the first identified target of
activated RhoA, and was found to play a role in stress
fiber and focal adhesion formation. It is prominently
expressed in the brain, heart, and skeletal muscles. It
is implicated in vascular and neurological disorders,
such as hypertension and vasospasm of the coronary and
cerebral arteries. ROCK2 is also activated by caspase-2
cleavage, resulting in thrombin-induced microparticle
generation in response to cell activation. Mice
deficient in ROCK2 show intrauterine growth retardation
and embryonic lethality because of placental
dysfunction.
Length = 370
Score = 72.4 bits (177), Expect = 4e-13
Identities = 61/228 (26%), Positives = 115/228 (50%), Gaps = 24/228 (10%)
Query: 547 KSIDQLMKDREDLQQQINLLKE-----------GKGAYGIVYKAYDKNNKQYVAIKKI-- 593
K+ID + E + ++I L+ G+GA+G V K++++ A+K +
Sbjct: 19 KNIDNFLNRYEKIVRKIRKLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSK 78
Query: 594 FEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVI 652
FE + ++D+ + E + +F P ++ + ++ ++K LY+V EYM DL ++
Sbjct: 79 FEMIK-RSDSAFFWEERDIM-AFANSPWVVQLFCAFQ--DDKYLYMVMEYMPGGDLVNLM 134
Query: 653 RDKILKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSD 712
+ + + ++ ++ L IH+ ++HRD+KP N+L+DK +K+ D G + +
Sbjct: 135 SNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDE 194
Query: 713 SK--ECLTEYIATRWYRAPEILIS---NRRYTHHVDIWSLGCILAEML 755
+ C T + T Y +PE+L S + Y D WS+G L EML
Sbjct: 195 TGMVRCDTA-VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEML 241
>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 2. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 2 (FGFR2); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR2 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. There are many splice
variants of FGFR2 which show differential expression and
binding to FGF ligands. Disruption of either FGFR2 or
FGFR2b is lethal in mice, due to defects in the placenta
or severe impairment of tissue development including
lung, limb, and thyroid, respectively. Disruption of
FGFR2c in mice results in defective bone and skull
development. Genetic alterations of FGFR2 are associated
with many human skeletal disorders including Apert
syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and
Pfeiffer syndrome.
Length = 304
Score = 71.2 bits (174), Expect = 4e-13
Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 38/245 (15%)
Query: 569 GKGAYGIVYKA------YDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNI 622
G+G +G V A DK + K+ + + D E+ +K +H NI
Sbjct: 24 GEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNI 83
Query: 623 ITMLDIYKAVNNKDLYVVFEYMEN-------------------DLNKVIRDKI-LKDVHI 662
I +L + LYV+ EY D+ +V +++ KD +
Sbjct: 84 INLLG--ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKD--L 139
Query: 663 RYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSD---SKECLTE 719
+Q+ G+ Y+ + K +HRDL N+L+ ++ +KI D GLAR +++ K+
Sbjct: 140 VSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNG 199
Query: 720 YIATRWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPGASTSHQLQLIVNLV 777
+ +W APE L +R YTH D+WS G ++ E+ L P +PG +L+
Sbjct: 200 RLPVKWM-APEALF-DRVYTHQSDVWSFGVLMWEIFTLGGSP-YPGIPVEELFKLLKEGH 256
Query: 778 RPNPP 782
R + P
Sbjct: 257 RMDKP 261
>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain
Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Discoidin Domain Receptor
(DDR)-like proteins; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR-like
proteins are members of the DDR subfamily, which are
receptor tyr kinases (RTKs) containing an extracellular
discoidin homology domain, a transmembrane segment, an
extended juxtamembrane region, and an intracellular
catalytic domain. The binding of the ligand, collagen,
to DDRs results in a slow but sustained receptor
activation. DDRs regulate cell adhesion, proliferation,
and extracellular matrix remodeling. They have been
linked to a variety of human cancers including breast,
colon, ovarian, brain, and lung. There is no evidence
showing that DDRs act as transforming oncogenes. They
are more likely to play a role in the regulation of
tumor growth and metastasis.
Length = 295
Score = 70.8 bits (173), Expect = 5e-13
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 33/190 (17%)
Query: 588 VAIKKIFEAFRNKTDAQRTYREILFLKSFQ-----RHPNIITMLDIYKAVNNKDLYVVFE 642
VA+K + + D +T R FLK + ++PNII +L + V++ L ++ E
Sbjct: 47 VAVKML------RADVTKTARND-FLKEIKIMSRLKNPNIIRLLGV--CVSDDPLCMITE 97
Query: 643 YMEN-DLNKV-----IRDKILKDVHIR--------YIMFQLCNGLSYIHACKVMHRDLKP 688
YMEN DLN+ I +I Y+ Q+ +G+ Y+ + +HRDL
Sbjct: 98 YMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLAT 157
Query: 689 SNILIDKSCSIKIGDLGLARSLSDSKECLTE---YIATRWYRAPEILISNRRYTHHVDIW 745
N L+ +IKI D G++R+L + + RW IL+ ++T D+W
Sbjct: 158 RNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLG--KFTTASDVW 215
Query: 746 SLGCILAEML 755
+ G L EM
Sbjct: 216 AFGVTLWEMF 225
>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 1. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK1 is preferentially expressed in the liver,
lung, spleen, testes, and kidney. It mediates signaling
from Rho to the actin cytoskeleton. It is implicated in
the development of cardiac fibrosis, cardiomyocyte
apoptosis, and hyperglycemia. Mice deficient with ROCK1
display eyelids open at birth (EOB) and omphalocele
phenotypes due to the disorganization of actin filaments
in the eyelids and the umbilical ring.
Length = 371
Score = 72.0 bits (176), Expect = 5e-13
Identities = 61/219 (27%), Positives = 110/219 (50%), Gaps = 13/219 (5%)
Query: 545 YKKSIDQLMKDREDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKI--FEAFRNKTD 602
YK +I+++ R + + G+GA+G V K+ ++ A+K + FE + ++D
Sbjct: 28 YKDTINKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIK-RSD 86
Query: 603 AQRTYREILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVH 661
+ + E + +F P ++ + Y +++ LY+V EYM DL ++ + + +
Sbjct: 87 SAFFWEERDIM-AFANSPWVVQLF--YAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKW 143
Query: 662 IRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSK--ECLTE 719
R+ ++ L IH+ +HRD+KP N+L+DKS +K+ D G ++ C T
Sbjct: 144 ARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTA 203
Query: 720 YIATRWYRAPEILIS---NRRYTHHVDIWSLGCILAEML 755
+ T Y +PE+L S + Y D WS+G L EML
Sbjct: 204 -VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML 241
>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 1. Protein kinases (PKs),
MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK1 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients. MEK1 also plays a role in cell
cycle control.
Length = 333
Score = 71.2 bits (174), Expect = 6e-13
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 30/211 (14%)
Query: 556 REDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIK----KIFEAFRNKTDAQRTYREIL 611
++D ++I+ L G G G+V+K K + +A K +I A RN+ RE+
Sbjct: 3 KDDDFEKISELGAGNG--GVVFKVSHKPSGLIMARKLIHLEIKPAIRNQI-----IRELQ 55
Query: 612 FLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIR------DKILKDVHIRY 664
L P I+ + ++ ++ + E+M+ L++V++ ++IL V I
Sbjct: 56 VLHECNS-PYIVGFYGAF--YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAV 112
Query: 665 IMFQLCNGLSYI-HACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIAT 723
I GL+Y+ K+MHRD+KPSNIL++ IK+ D G++ L DS ++ T
Sbjct: 113 I-----KGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA--NSFVGT 165
Query: 724 RWYRAPEILISNRRYTHHVDIWSLGCILAEM 754
R Y +PE L Y+ DIWS+G L EM
Sbjct: 166 RSYMSPERL-QGTHYSVQSDIWSMGLSLVEM 195
>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 7. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK7
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs
to the visual group of GRKs. It is primarily found in
the retina and plays a role in the regulation of opsin
light receptors. GRK7 is located in retinal cone outer
segments and plays an important role in regulating
photoresponse of the cones.
Length = 277
Score = 70.4 bits (172), Expect = 6e-13
Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 14/200 (7%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTY---REILFLKSFQRHPNIITM 625
GKG +G V KN + A KK+ + K ++ +EIL + P I+ +
Sbjct: 2 GKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVN---SPFIVNL 58
Query: 626 LDIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMF---QLCNGLSYIHACKV 681
Y + L +V M DL I + + + + ++ Q+ G+ ++H+ +
Sbjct: 59 --AYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDI 116
Query: 682 MHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHH 741
++RD+KP N+L+D + ++ DLGLA L D K +T+ T Y APEIL Y++
Sbjct: 117 VYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT-ITQRAGTNGYMAPEIL-KEEPYSYP 174
Query: 742 VDIWSLGCILAEMLQSKPLF 761
VD +++GC + EM+ + F
Sbjct: 175 VDWFAMGCSIYEMVAGRTPF 194
>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional.
Length = 392
Score = 71.4 bits (175), Expect = 7e-13
Identities = 69/280 (24%), Positives = 114/280 (40%), Gaps = 45/280 (16%)
Query: 523 KHRSDLSSKESLLS---NGKEREVDYKKSIDQLMKDREDLQQQINLLKE-GKGAYGIVY- 577
H +D + E LS + + + S D R Q N+L G+ G V+
Sbjct: 55 THATDYDADEESLSPQTDVCQEPCETTSSSDPASVVR----MQYNILSSLTPGSEGEVFV 110
Query: 578 -KAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDIYKAVN--- 633
+ ++ V +K + T + REI LK+ H II ++ Y+ +
Sbjct: 111 CTKHGDEQRKKVIVKAV-------TGGKTPGREIDILKTIS-HRAIINLIHAYRWKSTVC 162
Query: 634 ------NKDLYVVFEYMEN-DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRDL 686
DL+ + L + I I +L L+Y+H ++HRD+
Sbjct: 163 MVMPKYKCDLFTYVDRSGPLPLEQAI-----------TIQRRLLEALAYLHGRGIIHRDV 211
Query: 687 KPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY--IATRWYRAPEILISNRRYTHHVDI 744
K NI +D+ + +GD G A L + Y T +PE+L + Y DI
Sbjct: 212 KTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALD-PYCAKTDI 270
Query: 745 WSLGCILAEML-QSKPLF--PGASTSHQLQLIVNLVRPNP 781
WS G +L EM ++ LF S+S QL+ I+ ++ +P
Sbjct: 271 WSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHP 310
>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
PBS2-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Polymyxin B
resistance protein 2 (PBS2) from Saccharomyces
cerevisiae, Wis1 from Schizosaccharomyces pombe, and
related proteins. PBS2 and Wis1 are components of
stress-activated MAPK cascades in budding and fission
yeast, respectively. PBS2 is the specific activator of
the MAPK Hog1, which plays a central role in the
response of budding yeast to stress including exposure
to arsenite and hyperosmotic environments. Wis1
phosphorylates and activates the MAPK Sty1 (also called
Spc1 or Phh1), which stimulates a transcriptional
response to a wide range of cellular insults through the
bZip transcription factors Atf1, Pcr1, and Pap1.
Length = 286
Score = 70.3 bits (172), Expect = 8e-13
Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 31/241 (12%)
Query: 562 QINLLKE-GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHP 620
+I +L E GKG YG VYK + +A+K+I R + D + + +I+
Sbjct: 2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEI----RLELD-ESKFNQIIMELDILHKA 56
Query: 621 NIITMLDIYKAVNNKD-LYVVFEYME-NDLNKV----IRDKILKDVHIRYIMFQLCNGLS 674
++D Y A + +Y+ EYM+ L+K+ + + + + +R I + + GL
Sbjct: 57 VSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLK 116
Query: 675 YI-HACKVMHRDLKPSNILIDKSCSIKIGDLG----LARSLSDSKECLTEYIATRWYRAP 729
++ ++HRD+KP+N+L++ + +K+ D G L SL+ + I + Y AP
Sbjct: 117 FLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTN------IGCQSYMAP 170
Query: 730 EILIS-----NRRYTHHVDIWSLGCILAEM-LQSKPLFPGASTS--HQLQLIVNLVRPNP 781
E + S N YT D+WSLG + EM L P P + QL IV+ P
Sbjct: 171 ERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPPTL 230
Query: 782 P 782
P
Sbjct: 231 P 231
>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase,
Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lyn is a member of the
Src subfamily of proteins, which are cytoplasmic (or
non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Lyn is
expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn and
Blk, promotes B cell activation by phosphorylating ITAMs
(immunoreceptor tyr activation motifs) in CD19 and in Ig
components of BCR. It negatively regulates signaling by
its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an important
role in G-CSF receptor signaling by phosphorylating a
variety of adaptor molecules.
Length = 261
Score = 69.7 bits (170), Expect = 8e-13
Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 19/217 (8%)
Query: 560 QQQINLLKE-GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQR 618
++ I L+K+ G G +G V+ Y NN VA+K + Q E +K+ Q
Sbjct: 5 RESIKLVKKLGAGQFGEVWMGY-YNNSTKVAVKTLKPG---TMSVQAFLEEANLMKTLQ- 59
Query: 619 HPNIITMLDIYKAVNNKD-LYVVFEYMEND--LNKVIRDKILKDVHIRYIMF--QLCNGL 673
H ++ + Y V ++ +Y++ EYM L+ + D+ K + + I F Q+ G+
Sbjct: 60 HDKLVRL---YAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGM 116
Query: 674 SYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTE--YIATRWYRAPEI 731
+YI +HRDL+ +N+L+ +S KI D GLAR + D++ E +W APE
Sbjct: 117 AYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKW-TAPEA 175
Query: 732 LISNRRYTHHVDIWSLGCILAEMLQ-SKPLFPGASTS 767
I+ +T D+WS G +L E++ K +PG S S
Sbjct: 176 -INFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNS 211
>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 3. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK3
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK3 (also known as beta-adrenergic
receptor kinase 2) is widely expressed in many tissues.
GRK3-deficient mice show a lack of olfactory receptor
desensitization and altered regulation of the M2
muscarinic airway. GRK3 is involved in modulating the
cholinergic response of airway smooth muscles. It also
plays a role in dopamine receptor regulation. GRK3
promoter polymorphisms may be associated with bipolar
disorder.
Length = 279
Score = 70.0 bits (171), Expect = 9e-13
Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 11/231 (4%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTY----REILFLKSFQRHPNIIT 624
G+G +G VY + + A+K + R K T R +L L S P I+
Sbjct: 3 GRGGFGEVYGCRKADTGKMYAMK-CLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 61
Query: 625 MLDIYKAVNNKDLYVVFEYMEN-DLN-KVIRDKILKDVHIRYIMFQLCNGLSYIHACKVM 682
M Y L + + M DL+ + + + + +R+ ++ GL ++H V+
Sbjct: 62 M--TYAFHTPDKLCFILDLMNGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVV 119
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHV 742
+RDLKP+NIL+D+ ++I DLGLA S K + + T Y APE+L Y
Sbjct: 120 YRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS--VGTHGYMAPEVLQKGTAYDSSA 177
Query: 743 DIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKS 793
D +SLGC+L ++L+ F T + ++ + N D F KS
Sbjct: 178 DWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVNVELPDSFSPELKS 228
>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase B. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase B
(TrkB); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkB is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkB
to its ligands, brain-derived neurotrophic factor (BDNF)
or neurotrophin 4 (NT4), results in receptor
oligomerization and activation of the catalytic domain.
TrkB is broadly expressed in the nervous system and in
some non-neural tissues. It plays important roles in
cell proliferation, differentiation, and survival.
BDNF/Trk signaling plays a key role in regulating
activity-dependent synaptic plasticity. TrkB also
contributes to protection against gp120-induced neuronal
cell death. TrkB overexpression is associated with poor
prognosis in neuroblastoma (NB) and other human cancers.
It acts as a suppressor of anoikis (detachment-induced
apoptosis) and contributes to tumor metastasis.
Length = 288
Score = 70.1 bits (171), Expect = 9e-13
Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 40/215 (18%)
Query: 569 GKGAYGIVYKAYDKN-----NKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNII 623
G+GA+G V+ A N +K VA+K + +A N + +RE L + Q H +I+
Sbjct: 14 GEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNAR--KDFHREAELLTNLQ-HEHIV 70
Query: 624 TMLDIYKAVNNKDLYVVFEYMEN-DLNKVIR----DKIL----------KDVHIRYIMFQ 668
+ V L +VFEYM++ DLNK +R D +L + +I Q
Sbjct: 71 KFYGV--CVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQ 128
Query: 669 LCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY-------- 720
+ G+ Y+ + +HRDL N L+ ++ +KIGD G++R + T+Y
Sbjct: 129 IAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYS-----TDYYRVGGHTM 183
Query: 721 IATRWYRAPEILISNRRYTHHVDIWSLGCILAEML 755
+ RW P I R++T D+WSLG +L E+
Sbjct: 184 LPIRW--MPPESIMYRKFTTESDVWSLGVVLWEIF 216
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of
Phototropin-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Phototropin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
phototropin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Included in this subfamily
are plant phototropins and predominantly uncharacterized
fungal STKs whose catalytic domains resemble the
phototropin kinase domain. One protein from Neurospora
crassa is called nrc-2. Phototropins are blue-light
receptors that control responses such as phototropism,
stromatal opening, and chloroplast movement in order to
optimize the photosynthetic efficiency of plants. They
are light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 70.4 bits (173), Expect = 1e-12
Identities = 59/229 (25%), Positives = 95/229 (41%), Gaps = 43/229 (18%)
Query: 564 NLLKE-GKGAYGIVYKAYDKNNKQYVAIK---KIFEAFRNKTDAQRTYREILFLKSFQRH 619
+K GKG G V+ K + A+K K RNK T +EIL + H
Sbjct: 4 KKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEIL---ATLDH 60
Query: 620 PNIITMLDIYKAVNNKDLYVVFEY-MENDLNKVIR---DKILKDVHIRYIMFQLCNGLSY 675
P + T+ ++ L +V +Y +L ++++ K L + R+ ++ L Y
Sbjct: 61 PFLPTLYASFQT--ETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEY 118
Query: 676 IHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDS-----------------KECLT 718
+H +++RDLKP NIL+ +S I + D L++ +
Sbjct: 119 LHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPS 178
Query: 719 EYIA------------TRWYRAPEILISNRRYTHHVDIWSLGCILAEML 755
E + T Y APE+ IS + VD W+LG +L EML
Sbjct: 179 ETFSEEPSFRSNSFVGTEEYIAPEV-ISGDGHGSAVDWWTLGILLYEML 226
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 72.4 bits (178), Expect = 1e-12
Identities = 85/370 (22%), Positives = 175/370 (47%), Gaps = 11/370 (2%)
Query: 166 SQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECR--- 222
S+ + S KELE L L +LE+ + L + R L + + L ++
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715
Query: 223 --LQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQ--YQQEVRA 278
L+ L EL + QL L E++ LE+E L L+ + + +E A
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775
Query: 279 HEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMK 338
+ + + K +A E ++EL++ + + L + E L + ++R ++ I++L +
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835
Query: 339 DREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKARE 398
+ E+L+++++ L+E EL + ++ + L+ ++E+ +A+K L+ +L E L+
Sbjct: 836 EIEELEEKLDELEE--ELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893
Query: 399 EQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETE--QYFSTLYKTQAHE 456
+L E+A L+E + E +L+ K ++++ EL+++LE E T + +
Sbjct: 894 RELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIER 953
Query: 457 LKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKEKTMKELE 516
L+EE++ L EE ++ R + ++ + A+ E + EL+KEK + E
Sbjct: 954 LEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKE 1013
Query: 517 LKDLMAKHRS 526
D + ++ S
Sbjct: 1014 TFDKINENFS 1023
Score = 72.1 bits (177), Expect = 1e-12
Identities = 74/366 (20%), Positives = 157/366 (42%), Gaps = 30/366 (8%)
Query: 210 LGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQ 269
L +K E E L L +LE+ + L + R L + + L ++ L +L+ +
Sbjct: 663 LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELK 722
Query: 270 AQYQQEVRAHEETQKSRMVNKEEAS--VEIVKELKDLMAKHRSDLSSKESLLSNGKEREV 327
+ E+ Q +EE E ++EL++ + + +L S E L+ KE
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782
Query: 328 DYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQ 387
+ ++ L ++ E+L++++ + + L+ ++E + ++ L+ ++
Sbjct: 783 ELEEKRQALQEELEELEEELEEAERRLD---------ALERELESLEQRRERLEQEIEEL 833
Query: 388 TSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFS 447
E L+ + ++L E+ L + ++EE +L+ ++ + ++KEL+++ E
Sbjct: 834 EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE------ 887
Query: 448 TLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELE 507
EL+EEL E + EL+EE L RL+ A+ + + EE + E
Sbjct: 888 --------ELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEY 939
Query: 508 KEKTMKELELK-DLMAKHRSDLS----SKESLLSNGKEREVDYKKSIDQLMKDREDLQQQ 562
++ ELE + + + + L +ER + K + L + +E L +
Sbjct: 940 EDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999
Query: 563 INLLKE 568
I L +
Sbjct: 1000 IEELDK 1005
Score = 65.1 bits (159), Expect = 2e-10
Identities = 90/402 (22%), Positives = 164/402 (40%), Gaps = 66/402 (16%)
Query: 32 ERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESET 91
++RE+ +LEE +L Q E + +L++E+ LE L LR L+E +R+
Sbjct: 665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ------- 717
Query: 92 KKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMER 151
E+LK E +Q + EL+ L LE E
Sbjct: 718 --------------LEELKRELAALEEELEQLQSR----------LEELEEELEELEEEL 753
Query: 152 DTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLG 211
+ LQ+ + L+ ++ + + +ELE + QAL ELE EL+ AE
Sbjct: 754 EELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE-ELEEELEEAER----- 807
Query: 212 EKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQ 271
RL AL ELE + R +L ++ L E++ LE++ L EL+ + +
Sbjct: 808 ----------RLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE 857
Query: 272 YQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKK 331
++ EE + + EL+D + + + E L + + K+
Sbjct: 858 LEELKEELEELEAEKE------------ELEDELKELEEEKEELEEELRELESELAELKE 905
Query: 332 SIDQLMKDREDLQQQINLLKEGAELRQELEKS---KTLQSQVEQEQAKKFSLQSDLSVQT 388
I++L + E+L+ ++ L+ +E + TL++++E+E + L
Sbjct: 906 EIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVN 965
Query: 389 SEA----AHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKR 426
A ++ R E+L + L EAK + E +L ++
Sbjct: 966 LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007
Score = 62.0 bits (151), Expect = 2e-09
Identities = 66/364 (18%), Positives = 144/364 (39%), Gaps = 21/364 (5%)
Query: 218 EKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVR 277
E E +L+ LER + +L + L + E L EL+ +
Sbjct: 176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE-RYQELKAELRELELALLLAKL 234
Query: 278 AHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLM 337
+ + + E ++EL++ + + ++ +S L +E + ++ + +L
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294
Query: 338 KDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAR 397
++ E+L+ +I+LL+E L + + + L+ ++E+ + K +L+ +L + + L+
Sbjct: 295 EEIEELEGEISLLRE--RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352
Query: 398 EEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHEL 457
+L L E + EE + + L+++L + + + EL
Sbjct: 353 LAELEEAKEELEEKLSALLEE----------LEELFEALREELAELEAELAEIRNELEEL 402
Query: 458 KEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKEKTMKELEL 517
K E++ + L E DL L+ A + E + ELE++ L
Sbjct: 403 KREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462
Query: 518 KDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKE----GKGAY 573
K+L +L+ + L ++ + +D+L ++ Q +L+ G Y
Sbjct: 463 KEL----ERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVY 518
Query: 574 GIVY 577
G V
Sbjct: 519 GPVA 522
Score = 60.9 bits (148), Expect = 4e-09
Identities = 85/375 (22%), Positives = 167/375 (44%), Gaps = 36/375 (9%)
Query: 31 RERREM-------SQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQR 83
ERR++ S+ +ER+ + + E L D + +LEK L L E
Sbjct: 155 EERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQ-AEKAE 213
Query: 84 RADNESETKKKAEVNLQV--ISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQ 141
R ++ E+ L + + ++ ++L+ E +RL ++ EL E+ + EL+
Sbjct: 214 RYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELK 273
Query: 142 NILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHREL 201
+ L L E + LQ+E+ L+ +I +ELEG + L LE ++
Sbjct: 274 SELEELREELEELQEELLELKEEI--------------EELEGEISLLRERLEELENELE 319
Query: 202 QLAEDNRHLGEKVSSLEKE-----CRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEK 256
+L E L EK+ +L++E L+ L L + + +L E L E++ L +
Sbjct: 320 ELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFE 379
Query: 257 ECASLSLELKAAQAQYQQEVRAHE------ETQKSRMVNKEEASVEIVKELKDLMAKHRS 310
EL+A A+ + E+ + E + R+ + E E +KEL+ + + ++
Sbjct: 380 ALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQT 439
Query: 311 DLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQI-NLLKEGAELRQELEKSKTLQSQ 369
+L L +E+ + + + +L ++ +LQ+++ L KE + L L++ + Q
Sbjct: 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499
Query: 370 VEQEQAKKFSLQSDL 384
+ +A +L+S L
Sbjct: 500 SQGVRAVLEALESGL 514
Score = 58.6 bits (142), Expect = 2e-08
Identities = 75/345 (21%), Positives = 152/345 (44%), Gaps = 22/345 (6%)
Query: 20 QANGELKDLLERERR---EMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRH 76
+ EL +L + + E+ L+ R L + E + + L ++ +L++ L L
Sbjct: 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEE 730
Query: 77 DLKESQRRADNESETKKKAEVNL----QVISDMHEKLKTEAETATRLRKQSAELTVAKSA 132
+L++ Q R + E ++ E L + + ++ E+L++ E +L+++ EL + A
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA 790
Query: 133 GEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTE 192
++ + EL+ L E D L++E+ +L+ + + + +ELE +L L E
Sbjct: 791 LQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE 850
Query: 193 LERNKHRELQLAEDNRHLGEKVSSLEKEC-----RLQALNTELERNKHRELQLAEDNRHL 247
LE + +L E+ L + LE E + L EL + +L E+ L
Sbjct: 851 LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910
Query: 248 GEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAK 307
E++ LE + L +EL + + ++E ET+ R + + E +E + + +L A
Sbjct: 911 RERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPV-NLRAI 969
Query: 308 HRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKE 352
+ +ER + K + L + +E L + I L +
Sbjct: 970 EEYE---------EVEERYEELKSQREDLEEAKEKLLEVIEELDK 1005
Score = 50.5 bits (121), Expect = 5e-06
Identities = 55/287 (19%), Positives = 128/287 (44%), Gaps = 16/287 (5%)
Query: 821 ENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVENDESYVQDSRLEGWVSIP 880
S L + EL + E+ +L+ +L L E L S E L +
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEE---LKSLKNELRSLEDLLEELRRQLEEL 714
Query: 881 NKQN--IKRHGWKKQYVVVSSKKIIFYNSENDKQNTDPELELKDLMAKHRSDLSSKESLL 938
+Q +KR + + + + E ++ + EL++ + + +L S E L
Sbjct: 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774
Query: 939 SNGKEREVDYKKSIDQLMKDREDLQQQINLLKEEL----RKSSNSSEEMEKLHKQLKQEQ 994
+ KE + ++ L ++ E+L++++ + L R+ + + E+L +++++ +
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834
Query: 995 LLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVV 1054
+ KL E+ + + + + ++ + E E +L+ EL + E+ ++
Sbjct: 835 EEIEELEEKLDELEEELE---ELEKELEELKEELEELEAEKEELEDELKELEEEKEEL-- 889
Query: 1055 KCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSE 1101
++EL+EL+S++ E KL+ L+ ++++E+L+ +L L E
Sbjct: 890 --EEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEE 934
Score = 48.2 bits (115), Expect = 3e-05
Identities = 39/201 (19%), Positives = 99/201 (49%), Gaps = 11/201 (5%)
Query: 919 ELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSN 978
EL+ + K +L S ++ L + ++ + ++ +++L + E+L++++ L+EEL + +
Sbjct: 678 ELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQS 737
Query: 979 SSEEMEKLHKQLKQEQLLKAQAVNKLAEIMN-----------RKDINTTCKGKSKASSAD 1027
EE+E+ ++L++E + + +L E + + + + +
Sbjct: 738 RLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEE 797
Query: 1028 VRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSE 1087
+ ++ +E + L +E E Q + ++E++EL+ ++ E +L+ EL+ + E
Sbjct: 798 LEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE 857
Query: 1088 IEQLQGKLAALGSETASLSSA 1108
+E+L+ +L L +E L
Sbjct: 858 LEELKEELEELEAEKEELEDE 878
Score = 48.2 bits (115), Expect = 3e-05
Identities = 49/227 (21%), Positives = 107/227 (47%), Gaps = 6/227 (2%)
Query: 904 FYNSENDKQNTDPELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQ 963
+ + + ELE + K +L++ E L + R + ++ +++L ++ E+LQ
Sbjct: 700 LEDLLEELRRQLEELERQLEELK--RELAALEEELEQLQSRLEELEEELEELEEELEELQ 757
Query: 964 QQINLLKEELR----KSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKG 1019
+++ L+EEL + EE+E+L ++ + Q + +L E R D
Sbjct: 758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELE 817
Query: 1020 KSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQM 1079
+ + ++ +E + +EL ++ ++ + + + +KEL+EL+ ++ E K +L+
Sbjct: 818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELED 877
Query: 1080 ELDSKDSEIEQLQGKLAALGSETASLSSADVENDESYVQDEVRSRSV 1126
EL + E E+L+ +L L SE A L + E + E + +
Sbjct: 878 ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERL 924
Score = 44.7 bits (106), Expect = 4e-04
Identities = 53/306 (17%), Positives = 128/306 (41%), Gaps = 36/306 (11%)
Query: 791 FKSKHEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALG 850
+ + E E+ + + + ++EL+ELQ ++ E +L+ EL+ E+E+LQ +L L
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294
Query: 851 SETASLSSADVENDESYVQDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSEND 910
E ++E + S +++ E + ++ ++ + +KI E +
Sbjct: 295 EE-----IEELEGEISLLRERLEEL------ENELEE---LEERLEELKEKIEALKEELE 340
Query: 911 KQNTDPELELKDLMAKHRSDLSSKESLLSNGKEREVD----YKKSIDQLMKDREDLQQQI 966
++ T EL+ L+A+ E LS E + ++ + +L + +++ ++
Sbjct: 341 ERETL-LEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399
Query: 967 NLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSA 1026
LK E+ E + + + LK+E + +L +
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEEL-----------------QTELE 442
Query: 1027 DVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDS 1086
++ ++ +E + +EL ++ + + + Q+ELQ L+ ++ +L+ E +
Sbjct: 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQG 502
Query: 1087 EIEQLQ 1092
L+
Sbjct: 503 VRAVLE 508
Score = 44.3 bits (105), Expect = 4e-04
Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 10/194 (5%)
Query: 385 SVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQ 444
S + K ++L E+A L +EEE LK + + ++EL+ QLE +
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715
Query: 445 YFSTLYKTQAHELKEELDERSRNILELEEERGDLT----------HRLQLAVARADSEAL 494
K + L+EEL++ + ELEEE +L L+ + +
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775
Query: 495 ARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMK 554
E + E + + EL++ + + L + E L + ++R ++ I++L +
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835
Query: 555 DREDLQQQINLLKE 568
+ E+L+++++ L+E
Sbjct: 836 EIEELEEKLDELEE 849
Score = 43.5 bits (103), Expect = 8e-04
Identities = 40/203 (19%), Positives = 97/203 (47%), Gaps = 9/203 (4%)
Query: 919 ELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSN 978
EL++ + + ++ +S L +E + ++ + +L ++ E+L+ +I+LL+E L + N
Sbjct: 257 ELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELEN 316
Query: 979 SSEEMEKLHKQLK-----QEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEK 1033
EE+E+ ++LK ++ L+ + ++ + + SA + + E+
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376
Query: 1034 ECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQG 1093
L++EL + + ++ + EL+EL+ ++ +L L+ E+++L+
Sbjct: 377 LFEALREELAELEAELAEI----RNELEELKREIESLEERLERLSERLEDLKEELKELEA 432
Query: 1094 KLAALGSETASLSSADVENDESY 1116
+L L +E L+ E +E
Sbjct: 433 ELEELQTELEELNEELEELEEQL 455
Score = 42.4 bits (100), Expect = 0.002
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 25 LKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRR 84
L++L + EE + +LS E + ALR+E+ +LE L +R++L+E +R
Sbjct: 346 LEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKRE 405
Query: 85 ADNESETKKKA----EVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVEL 140
++ E ++ E + + ++ +L+ L ++ EL + EL
Sbjct: 406 IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKEL 465
Query: 141 QNILATLEMERDTLQQEVATLQAKI 165
+ LA L+ E L++E+++L+A++
Sbjct: 466 ERELAELQEELQRLEKELSSLEARL 490
Score = 41.2 bits (97), Expect = 0.004
Identities = 62/296 (20%), Positives = 135/296 (45%), Gaps = 25/296 (8%)
Query: 808 QKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSA--DVENDE 865
+ EL L +++ E +L+ EL + E+E+LQ +L E L S ++ +
Sbjct: 224 ELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREEL 283
Query: 866 SYVQDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDKQNTDPELELKDLMA 925
+Q+ LE K+ I+ + + +++ N + + ELK+ +
Sbjct: 284 EELQEELLE------LKEEIEELEGEISLLRERLEELE--NELEELEERLE--ELKEKIE 333
Query: 926 KHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEK 985
+ +L +E+LL ++ + +++ ++L + L +++ L E LR EE+ +
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR------EELAE 387
Query: 986 LHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQE 1045
L +L + + N+L E+ + + D++++ KE +EL E
Sbjct: 388 LEAELAEIR-------NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTE 440
Query: 1046 REKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSE 1101
E+ N+ + + +++L+EL+ ++ E +LQ EL + E+ L+ +L L +E
Sbjct: 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496
Score = 40.9 bits (96), Expect = 0.005
Identities = 39/188 (20%), Positives = 81/188 (43%), Gaps = 19/188 (10%)
Query: 930 DLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQ 989
L L +E ++ +++L ++ E+ +++I LK EL + EE+E+L ++
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE---LREELEELQEE 289
Query: 990 LKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEK---------ECRKLQQ 1040
L + + + +++ + R + + KEK E L +
Sbjct: 290 LLELKEEIEELEGEISLLRERLEEL--ENELEELEERLEELKEKIEALKEELEERETLLE 347
Query: 1041 ELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLK-LQMELDSKDSEIEQLQGKLAALG 1099
EL Q + + +EL+E S ++EE + L+ EL ++E+ +++ +L L
Sbjct: 348 ELEQLLAELEEAK----EELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK 403
Query: 1100 SETASLSS 1107
E SL
Sbjct: 404 REIESLEE 411
Score = 40.1 bits (94), Expect = 0.008
Identities = 39/195 (20%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 10 QVDNAIPNGGQANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEK 69
+ + + + L+ ER +E+ +LEE +L E+ + L +E+ +LEK
Sbjct: 804 EAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD-------ELEEELEELEK 856
Query: 70 NLTILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVA 129
L L+ +L+E + + + K+ E + ++ E+L+ L+++ +L
Sbjct: 857 ELEELKEELEELEAEKEELEDELKELE---EEKEELEEELRELESELAELKEEIEKLRER 913
Query: 130 KSAGEQMVVELQNILATLE---------MERDTLQQEVATLQAKISQERSSKTQAVNLHK 180
E + L+ L LE L++E+ L+ +I +A+ ++
Sbjct: 914 LEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYE 973
Query: 181 ELEGRLQALNTELER 195
E+E R + L ++ E
Sbjct: 974 EVEERYEELKSQRED 988
Score = 38.9 bits (91), Expect = 0.022
Identities = 32/139 (23%), Positives = 73/139 (52%), Gaps = 2/139 (1%)
Query: 960 EDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKG 1019
EDL +++ E+L + + +E ++L +L++ +L A + KL E+ +
Sbjct: 192 EDLLEELEKQLEKLERQAEKAERYQELKAELRELEL--ALLLAKLKELRKELEELEEELS 249
Query: 1020 KSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQM 1079
+ + +++++ +E K +EL E E+ + + + Q+EL EL+ ++ E L+
Sbjct: 250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRE 309
Query: 1080 ELDSKDSEIEQLQGKLAAL 1098
L+ ++E+E+L+ +L L
Sbjct: 310 RLEELENELEELEERLEEL 328
Score = 35.1 bits (81), Expect = 0.31
Identities = 32/168 (19%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 946 VDYKKSIDQLMKDREDL---QQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVN 1002
K+ +L + E+L ++++ L+EEL ++ EE++ ++L++E + +
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELL 291
Query: 1003 KLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQE 1062
+L E + + + ++ + +E + +EL ++ E + + + + L+E
Sbjct: 292 ELKEEIEELEGE---ISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348
Query: 1063 LQSQVVEENTSKLKLQMELD----SKDSEIEQLQGKLAALGSETASLS 1106
L+ + E +K +L+ +L + E L+ +LA L +E A +
Sbjct: 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility.
It plays a role in the signaling of the growth factors
PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha
have been detected in many transformed cell lines and
several human tumors. In addition, PKC-alpha is required
for HER2 dependent breast cancer invasion.
Length = 323
Score = 70.0 bits (171), Expect = 1e-12
Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 6/209 (2%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG++G V A K + AIK + + D + T E L + P + +
Sbjct: 9 GKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHS 68
Query: 628 IYKAVNNKDLYVVFEYMEN-DLNKVIRD-KILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
++ V+ LY V EY+ DL I+ K+ + ++ GL ++H +++RD
Sbjct: 69 CFQTVDR--LYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRD 126
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LK N+++D IKI D G+ + + T Y APEI I+ + Y VD W
Sbjct: 127 LKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEI-IAYQPYGKSVDWW 185
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIV 774
+ G +L EML +P F G Q I+
Sbjct: 186 AYGVLLYEMLAGQPPFDGEDEDELFQSIM 214
>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 4. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 4 (FGFR4); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR4 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Unlike other FGFRs,
there is only one splice form of FGFR4. It binds FGF1,
FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective
ligand for FGFR4. Although disruption of FGFR4 in mice
causes no obvious phenotype, in vivo inhibition of FGFR4
in cultured skeletal muscle cells resulted in an arrest
of muscle progenitor differentiation. FGF6 and FGFR4 are
uniquely expressed in myofibers and satellite cells.
FGF6/FGFR4 signaling appears to play a key role in the
regulation of muscle regeneration. A polymorphism in
FGFR4 is found in head and neck squamous cell carcinoma.
Length = 314
Score = 69.6 bits (170), Expect = 1e-12
Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 36/235 (15%)
Query: 569 GKGAYGIVYKA----YDKNNKQY---VAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPN 621
G+G +G V +A DK+ VA+K + + +K D E+ +K +H N
Sbjct: 21 GEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDK-DLADLISEMELMKLIGKHKN 79
Query: 622 IITMLDIYKAVNNKDLYVVFEYM-ENDLNKVIR-----------------DKILKDVHIR 663
II +L + LYV+ EY + +L + +R ++ L +
Sbjct: 80 IINLLGV--CTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLV 137
Query: 664 YIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSD---SKECLTEY 720
+Q+ G+ Y+ + + +HRDL N+L+ + +KI D GLAR + D K+
Sbjct: 138 SCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGR 197
Query: 721 IATRWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPGASTSHQLQLI 773
+ +W APE L +R YTH D+WS G ++ E+ L P +PG +L+
Sbjct: 198 LPVKWM-APEALF-DRVYTHQSDVWSFGILMWEIFTLGGSP-YPGIPVEELFKLL 249
>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine
Kinases, Discoidin Domain Receptors. Protein Tyrosine
Kinase (PTK) family; Discoidin Domain Receptor (DDR)
subfamily; catalytic (c) domain. The DDR subfamily
consists of homologs of mammalian DDR1, DDR2, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
DDR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular discoidin homology domain, a
transmembrane segment, an extended juxtamembrane region,
and an intracellular catalytic domain. The binding of
the ligand, collagen, to DDRs results in a slow but
sustained receptor activation. DDRs regulate cell
adhesion, proliferation, and extracellular matrix
remodeling. They have been linked to a variety of human
cancers including breast, colon, ovarian, brain, and
lung. There is no evidence showing that DDRs act as
transforming oncogenes. They are more likely to play a
role in the regulation of tumor growth and metastasis.
Length = 296
Score = 69.3 bits (170), Expect = 2e-12
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 22/184 (11%)
Query: 588 VAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYMEN- 646
VA+K + + + +E+ L PNI +L + + L ++ EYMEN
Sbjct: 49 VAVKVLRPD-ASDNAREDFLKEVKILSRLS-DPNIARLLGV--CTVDPPLCMIMEYMENG 104
Query: 647 DLNKVIRDKILKDVHIR------------YIMFQLCNGLSYIHACKVMHRDLKPSNILID 694
DLN+ ++ + + + Y+ Q+ +G+ Y+ + +HRDL N L+
Sbjct: 105 DLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVG 164
Query: 695 KSCSIKIGDLGLARSLSDSKECLTEYIAT---RWYRAPEILISNRRYTHHVDIWSLGCIL 751
K+ +IKI D G++R+L S + A RW +L+ ++T D+W+ G L
Sbjct: 165 KNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLG--KFTTKSDVWAFGVTL 222
Query: 752 AEML 755
E+L
Sbjct: 223 WEIL 226
>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase,
Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Yes (or c-Yes) is a
member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. c-Yes
kinase is the cellular homolog of the oncogenic protein
(v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma
viruses. It displays functional overlap with other Src
subfamily members, particularly Src. It also shows some
unique functions such as binding to occludins,
transmembrane proteins that regulate extracellular
interactions in tight junctions. Yes also associates
with a number of proteins in different cell types that
Src does not interact with, like JAK2 and gp130 in
pre-adipocytes, and Pyk2 in treated pulmonary vein
endothelial cells. Although the biological function of
Yes remains unclear, it appears to have a role in
regulating cell-cell interactions and vesicle
trafficking in polarized cells.
Length = 260
Score = 68.5 bits (167), Expect = 2e-12
Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 556 REDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKS 615
RE L+ + L G+G +G V+ N VAIK + + T + + +
Sbjct: 5 RESLRLDVKL---GQGCFGEVWMG-TWNGTTKVAIKTL----KPGTMMPEAFLQEAQIMK 56
Query: 616 FQRHPNIITMLDIYKAVNNKDLYVVFEYMEN----DLNKVIRDKILKDVHIRYIMFQLCN 671
RH ++ + Y V+ + +Y+V E+M D K K LK + + Q+ +
Sbjct: 57 KLRHDKLVPL---YAVVSEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIAD 113
Query: 672 GLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIA-------TR 724
G++YI +HRDL+ +NIL+ + KI D GLAR + D+ EY A +
Sbjct: 114 GMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDN-----EYTARQGAKFPIK 168
Query: 725 WYRAPEILISNRRYTHHVDIWSLGCILAEML-QSKPLFPGASTSHQLQLI 773
W APE + R+T D+WS G +L E++ + + +PG L+ +
Sbjct: 169 W-TAPEAALYG-RFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQV 216
>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C epsilon.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), epsilon isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta.
PKC-epsilon has been shown to behave as an oncoprotein.
Its overexpression contributes to neoplastic
transformation depending on the cell type. It
contributes to oncogenesis by inducing disordered cell
growth and inhibiting cell death. It also plays a role
in tumor invasion and metastasis. PKC-epsilon has also
been found to confer cardioprotection against ischemia
and reperfusion-mediated damage. Other cellular
functions include the regulation of gene expression,
cell adhesion, and cell motility.
Length = 321
Score = 69.5 bits (170), Expect = 2e-12
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 6/196 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG++G V A K + AIK + + D T E L +HP + +
Sbjct: 4 GKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHC 63
Query: 628 IYKAVNNKDLYVVFEYMEN-DLN-KVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
++ + L+ V EY+ DL ++ R + + R+ ++ L ++H V++RD
Sbjct: 64 CFQTKDR--LFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRD 121
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LK NIL+D K+ D G+ + + T + T Y APEIL Y VD W
Sbjct: 122 LKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEIL-QELEYGPSVDWW 180
Query: 746 SLGCILAEMLQSKPLF 761
+LG ++ EM+ +P F
Sbjct: 181 ALGVLMYEMMAGQPPF 196
>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase,
Src. Protein Tyrosine Kinase (PTK) family; Src kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Src (or c-Src) is a
cytoplasmic (or non-receptor) tyr kinase, containing an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region with a conserved tyr.
It is activated by autophosphorylation at the tyr kinase
domain, and is negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
c-Src is the vertebrate homolog of the oncogenic protein
(v-Src) from Rous sarcoma virus. Together with other Src
subfamily proteins, it is involved in signaling pathways
that regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Src also play a role in regulating cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Elevated levels of Src kinase activity
have been reported in a variety of human cancers.
Several inhibitors of Src have been developed as
anti-cancer drugs. Src is also implicated in acute
inflammatory responses and osteoclast function.
Length = 262
Score = 68.5 bits (167), Expect = 2e-12
Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 31/240 (12%)
Query: 556 REDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKS 615
RE L+ ++ L G+G +G V+ N VAIK + + +E +K
Sbjct: 5 RESLRLEVKL---GQGCFGEVWMG-TWNGTTRVAIKTLKPG---TMSPEAFLQEAQVMKK 57
Query: 616 FQRHPNIITMLDIYKAVNNKDLYVVFEYMEN----DLNKVIRDKILKDVHIRYIMFQLCN 671
RH ++ + Y V+ + +Y+V EYM D K K L+ + + Q+ +
Sbjct: 58 L-RHEKLVQL---YAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIAS 113
Query: 672 GLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIA-------TR 724
G++Y+ +HRDL+ +NIL+ ++ K+ D GLAR + D+ EY A +
Sbjct: 114 GMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDN-----EYTARQGAKFPIK 168
Query: 725 WYRAPEILISNRRYTHHVDIWSLGCILAEM-LQSKPLFPGASTSHQLQLIVNLVR-PNPP 782
W APE + R+T D+WS G +L E+ + + +PG L + R P PP
Sbjct: 169 W-TAPEAALYG-RFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPP 226
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ack
subfamily members are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal catalytic domain, an
SH3 domain, a Cdc42-binding CRIB domain, and a
proline-rich region. They are mainly expressed in brain
and skeletal tissues and are involved in the regulation
of cell adhesion and growth, receptor degradation, and
axonal guidance. Ack1 is also associated with
androgen-independent prostate cancer progression. Tnk1
regulates TNFalpha signaling and may play an important
role in cell death.
Length = 257
Score = 68.2 bits (167), Expect = 3e-12
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 19/148 (12%)
Query: 618 RHPNIITMLDIYKAVNNKDLYVVFEYME-----NDLNKVIRDKILKDVHIRYIMFQLCNG 672
H N+I + Y V L +V E + L K L Y + Q+ NG
Sbjct: 54 DHENLIRL---YGVVLTHPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAV-QIANG 109
Query: 673 LSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYR----- 727
+ Y+ + + +HRDL NIL+ +KIGD GL R+L +++ Y+ +
Sbjct: 110 MRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDH---YVMEEHLKVPFAW 166
Query: 728 -APEILISNRRYTHHVDIWSLGCILAEM 754
APE L R ++H D+W G L EM
Sbjct: 167 CAPESL-RTRTFSHASDVWMFGVTLWEM 193
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 70.9 bits (174), Expect = 3e-12
Identities = 72/340 (21%), Positives = 142/340 (41%), Gaps = 37/340 (10%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQR 83
EL++ LE + E+ + EE +L+ + + + + LR E+ +LE+ + L+ +L
Sbjct: 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
Query: 84 RADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNI 143
+ K+ L L +Q EL E + EL
Sbjct: 296 EISRLEQQKQILRERLA-----------------NLERQLEELEAQLEELESKLDELAEE 338
Query: 144 LATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQL 203
LA LE + + L++E+ +L+A++ + +ELE RL+ L +LE L
Sbjct: 339 LAELEEKLEELKEELESLEAELEELE-------AELEELESRLEELEEQLE-------TL 384
Query: 204 AEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSL 263
L +++SL E ++ L LER + R +L ++ L +K+ E + L
Sbjct: 385 RSKVAQLELQIASLNNE--IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEL 442
Query: 264 ELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGK 323
E + + QE E + + E + + + + +A+ ++ L S E L N +
Sbjct: 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
Query: 324 EREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKS 363
+ + + L+K++ L + +L E + + E +
Sbjct: 503 ----GFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAA 538
Score = 69.7 bits (171), Expect = 8e-12
Identities = 110/572 (19%), Positives = 217/572 (37%), Gaps = 48/572 (8%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQR 83
L+ LE E+ +LE R +L EQ E + ++ L ++ L + L L+ +
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
Query: 84 RADNESETKKKAEVNLQ-------------VISDMHEKLKTEAETATRLRKQSAELTVAK 130
R + + ++ L+ + ++ E + L + EL A+
Sbjct: 415 RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
Query: 131 SAGEQMVVELQNILATLEMERDTLQQEVATLQ---AKISQERSSKTQAVNLHKEL----E 183
A + EL + A L+ LQ+ + + + +S + + + EL E
Sbjct: 475 QALDAAERELAQLQARLDSLER-LQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDE 533
Query: 184 GRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAED 243
G A+ L + + E+ + ++ L++ + L+ K E+Q +
Sbjct: 534 GYEAAIEAALG--GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDR 591
Query: 244 NRHLGEK-VSSLEKECASLSLELKAA-QAQYQQEVRAHEETQKSRMVNKEEASVEIVKEL 301
+ + K+ +L+ A + + + K IV
Sbjct: 592 EILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLD 651
Query: 302 KDLMAKH----RSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLL-KEGAEL 356
DL+ + S+L +E I++L + E+L+++I L K AEL
Sbjct: 652 GDLVRPGGVITGGSAKTNSSILERRRE--------IEELEEKIEELEEKIAELEKALAEL 703
Query: 357 RQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIE 416
R+ELE L+ ++EQ + + L +S + A L+A EQL +A L + +E
Sbjct: 704 RKELE---ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
Query: 417 EEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERG 476
E +L+ + + ++ E + ++E + Q +LKEEL + EL E
Sbjct: 761 AEIEELEERLEEAEEELAEAEAEIEELE-------AQIEQLKEELKALREALDELRAELT 813
Query: 477 DLTHRLQLAVARADSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLS 536
L R +S + E + +LE++ +++ L A+ E L S
Sbjct: 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
Query: 537 NGKEREVDYKKSIDQLMKDREDLQQQINLLKE 568
+ + + L R +L++ L+E
Sbjct: 874 ELEALLNERASLEEALALLRSELEELSEELRE 905
Score = 69.3 bits (170), Expect = 1e-11
Identities = 115/583 (19%), Positives = 233/583 (39%), Gaps = 54/583 (9%)
Query: 20 QANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLK 79
EL++ LE R +++QLE + L+ + E + AR L D +L++ + L L+
Sbjct: 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE 431
Query: 80 ESQRRA-DNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVV 138
E++ + E E ++ LQ + E+L+ E +++ + A +
Sbjct: 432 EAELKELQAELEELEEELEELQ---EELERLEEALEELREELEEAEQALDAAERELAQLQ 488
Query: 139 ELQNILATLEMERDTLQQEVATL---QAKISQERSSKTQAVNLHKELEGRLQALNTELER 195
+ L L+ + + V L Q+ +S ++ +++ + E A+ L
Sbjct: 489 ARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYE---AAIEAALG- 544
Query: 196 NKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEK-VSSL 254
+ + E+ + ++ L++ + L+ K E+Q + + +
Sbjct: 545 -GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV 603
Query: 255 EKECASLSLELKAA-QAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKH----R 309
K+ +L+ A + + + K IV DL+
Sbjct: 604 AKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITG 663
Query: 310 SDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLL-KEGAELRQELEKSKTLQS 368
+ S+L +E I++L + E+L+++I L K AELR+ELE L+
Sbjct: 664 GSAKTNSSILERRRE--------IEELEEKIEELEEKIAELEKALAELRKELE---ELEE 712
Query: 369 QVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSV 428
++EQ + + L +S + A L+A EQL +A L + +E E +L+ +
Sbjct: 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
Query: 429 EDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRL------ 482
+ ++ E + ++E + K + L+E LDE + L EE +L RL
Sbjct: 773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
Query: 483 -------------QLAVARADSEALARSIAEETVGELEKEKTMKEL-----ELKDLMAKH 524
Q+ D E+LA I E E E ++ L L++ +A
Sbjct: 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
Query: 525 RSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLK 567
RS+L L + + + ++ +++L + L+ ++ L+
Sbjct: 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE 935
Score = 68.9 bits (169), Expect = 1e-11
Identities = 75/365 (20%), Positives = 148/365 (40%), Gaps = 48/365 (13%)
Query: 79 KESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVV 138
KE++R+ + E + E L + + L+ +AE A R ++ AEL
Sbjct: 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELR----------- 223
Query: 139 ELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKH 198
EL+ L L +E L+ ++ + + +A +EL LQ L +LE +
Sbjct: 224 ELELALLVLRLEE---------LREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
Query: 199 RELQLAEDNRH-------LGEKVSSLEKECR------------LQALNTELERNKHRELQ 239
+L E+ L ++S LE++ + L+ L +LE + + +
Sbjct: 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
Query: 240 LAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVK 299
LAE+ L EK+ L++E SL EL+ +A+ +E+ + E + ++ ++
Sbjct: 335 LAEELAELEEKLEELKEELESLEAELEELEAE-LEELESRLEELEEQLETLRSKVAQLEL 393
Query: 300 ELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQE 359
++ L + + E L E + + + + + + + L E EL +E
Sbjct: 394 QIASLNNEIERLEARLERL-----EDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
Query: 360 LEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEY 419
LE+ LQ ++E+ + L+ +L + QL + L + N+E
Sbjct: 449 LEE---LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS 505
Query: 420 HKLKT 424
+K
Sbjct: 506 EGVKA 510
Score = 63.2 bits (154), Expect = 8e-10
Identities = 75/362 (20%), Positives = 146/362 (40%), Gaps = 29/362 (8%)
Query: 223 LQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEET 282
+ E+E + + +L E L + ++ L KE L EL+ + + ++ R
Sbjct: 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731
Query: 283 QKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKS----IDQLMK 338
+K + + EA VE ++E ++K ++L ++ L E + I++L
Sbjct: 732 RKD--LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
Query: 339 DREDLQQQINLLKEG-----AELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAH 393
E L++++ L+E AEL E++ L+ ++E + + + + L +
Sbjct: 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
Query: 394 LKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQ 453
L E L+ E+ L E +E E L +R+ + + L+ +LE +
Sbjct: 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS-------EE 902
Query: 454 AHELKEELDERSRNILELEEERGDLTHRLQLAVARADS--EALAR--SIAEETVGELEKE 509
EL+ + E R + EL E+ L RL+ R D+ E L+ S+ E LE +
Sbjct: 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENK 962
Query: 510 KTMKELELKDLMAKHRSDLSS-------KESLLSNGKEREVDYKKSIDQLMKDREDLQQQ 562
E E + + + + + KER + L + +E L++
Sbjct: 963 IEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
Query: 563 IN 564
I
Sbjct: 1023 IE 1024
Score = 59.7 bits (145), Expect = 8e-09
Identities = 72/314 (22%), Positives = 127/314 (40%), Gaps = 36/314 (11%)
Query: 17 NGGQANGELKDL-LERERREMSQ-LEERQRQLSEQYEAVSARETALRDEMGQLEKNLTIL 74
GG A L RE E+ + +EE + +++E +A+ LR E+ +LE+ L L
Sbjct: 662 TGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKAL----AELRKELEELEEELEQL 717
Query: 75 RHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGE 134
R +L+E R+ + + E +++ E +L K+ EL E
Sbjct: 718 RKELEELSRQISALRKDLARLE----------AEVEQLEERIAQLSKELTELEAEIEELE 767
Query: 135 QMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELE 194
+ + E + LA E E + L+ ++ L+ ++ R + EL L LN E
Sbjct: 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA-------LDELRAELTLLNEEAA 820
Query: 195 RNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSL 254
+ R L E RL+ L ++E LA + L E + L
Sbjct: 821 NLRERLESLERRIA---------ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
Query: 255 EKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEI---VKELKDLMAKHRSD 311
E E +L L +A+ + +R+ E + E E+ ++EL++ +A+
Sbjct: 872 ESELEAL-LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR 930
Query: 312 LSSKESLLSNGKER 325
L E + N +ER
Sbjct: 931 LEGLEVRIDNLQER 944
Score = 57.8 bits (140), Expect = 3e-08
Identities = 99/574 (17%), Positives = 211/574 (36%), Gaps = 37/574 (6%)
Query: 20 QANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLK 79
+ L + + R ++ L ER L Q E + A+ L ++ +L + L L L+
Sbjct: 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
Query: 80 ESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATR--------LRKQSAELTVAKS 131
E + ++ ++ E L+ + E+L+ + ET + + E+ ++
Sbjct: 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
Query: 132 AGEQMVVELQNILATLEMERDTLQ-QEVATLQAKISQERSSKTQAVNLHKELEGRLQALN 190
E++ + + +E L+ E+ LQA++ + + + LE L+ L
Sbjct: 408 RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
Query: 191 TELERNKHRELQLAEDNRHLGEKVSSLEK-ECRLQALNTELERNKHRELQLAEDNRHLGE 249
ELE + + L ++ SLE+ + L+ + ++ + L+ L E
Sbjct: 468 EELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
Query: 250 KVSSLEKECASLSLELKAAQAQY----QQEVRAHEETQKSRMVNKEEASVEIVKELKDLM 305
+S E A++ L + K + + + ++
Sbjct: 528 LISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQ 587
Query: 306 AKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDR-------EDLQQQINLLKE-GAELR 357
R L + E L K+ V + + + + +DL + L K+ R
Sbjct: 588 GNDREILKNIEGFLGVAKDL-VKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYR 646
Query: 358 ------QELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREA 411
+ + + + + ++ + L+ + +L +A LR+
Sbjct: 647 IVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE 706
Query: 412 KRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILEL 471
+EEE +L+ + Q+ L+ L + + + +L +EL E I EL
Sbjct: 707 LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
Query: 472 EEERGDLTHRLQLAVARADSEALARSI--AEETVGELEKEKTMKELELKDLMAKHRSDLS 529
EE + +LA A A+ E L I +E + L + EL L + +
Sbjct: 767 EERLEEA--EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL----NEEAA 820
Query: 530 SKESLLSNGKEREVDYKKSIDQLMKDREDLQQQI 563
+ L + + R ++ ++ L + E+L + I
Sbjct: 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
Score = 57.0 bits (138), Expect = 6e-08
Identities = 64/354 (18%), Positives = 158/354 (44%), Gaps = 35/354 (9%)
Query: 231 ERNKHRELQLAEDNRHL---GEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRM 287
ER K E +L +L + ++ LE++ SL + + A+ +Y++ E + + +
Sbjct: 172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAE-RYKELKAELRELELALL 230
Query: 288 VNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQI 347
V + E E ++EL++ + + +L + L E +++ + +++ + Q+
Sbjct: 231 VLRLEELREELEELQEELKEAEEELEELTAEL-QELEEKLEELRLEVSELEEEIEELQKE 289
Query: 348 NLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAM 407
L E+ + L+ Q + + + +L+ L ++ L+++ ++L+ E+A
Sbjct: 290 LY-----ALANEISR---LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
Query: 408 LREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRN 467
L E ++EE ++ L+ +LE + +++ EL+E+L+
Sbjct: 342 LEEKLEELKEE--------------LESLEAELEELEAELEELESRLEELEEQLETLRSK 387
Query: 468 ILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKEKTMKEL--------ELKD 519
+ +LE + L + ++ AR + R ++ + EL K+ EL EL++
Sbjct: 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
Query: 520 LMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGKGAY 573
+ + + +L E L +E + ++++D ++ LQ +++ L+ +
Sbjct: 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
Score = 55.1 bits (133), Expect = 2e-07
Identities = 57/335 (17%), Positives = 136/335 (40%), Gaps = 22/335 (6%)
Query: 785 DKFYAGFKSKHEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQG 844
D G K N +++ ++E++EL+ ++ E +L+ L E+E+L+
Sbjct: 653 DLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEE 712
Query: 845 KLAALGSETASLSSADVENDESYVQDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIF 904
+L L E LS + + + Q K + + +++
Sbjct: 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
Query: 905 YNSENDKQNTDPELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQ 964
E + + E EL+ + + + +L + L + + L + E L++
Sbjct: 773 AEEELAEAEAEIE-ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
Query: 965 QINLLKEELRKSSNS----SEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKD-----INT 1015
+I + L SE++E L ++++ + L + ++L ++N + +
Sbjct: 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
Query: 1016 TCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQK---ELQELQSQVVEE-- 1070
+ S ++R+ E + +L++EL + REK Q+ ++ + + LQ ++ EE
Sbjct: 892 LRSELEEL-SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
Query: 1071 ------NTSKLKLQMELDSKDSEIEQLQGKLAALG 1099
+ K++ + + +++L+ K+ LG
Sbjct: 951 LTLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
Score = 55.1 bits (133), Expect = 3e-07
Identities = 66/347 (19%), Positives = 141/347 (40%), Gaps = 13/347 (3%)
Query: 102 ISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATL 161
I ++ EK++ E L K AEL E+ + +L+ L L + L++++A L
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
Query: 162 QAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKEC 221
+A++ Q Q ELE ++ L LE + + + L ++ L++E
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798
Query: 222 -----RLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEV 276
L L EL L E L ++++ E+ L +++ +
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
Query: 277 RAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQL 336
EE ++ + E+ +E + + + + + L S+ LS + + +
Sbjct: 859 AEIEELEELI--EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
Query: 337 MKDREDLQQQINLLKEGAELR-QELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLK 395
+++ + Q+ L EG E+R L++ + + + E+A+ + + + +
Sbjct: 917 LEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIE-----DDEEEAR 971
Query: 396 AREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLET 442
R ++L +++ L EEY +LK + Q ++L + ET
Sbjct: 972 RRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKET 1018
Score = 49.3 bits (118), Expect = 1e-05
Identities = 39/211 (18%), Positives = 88/211 (41%), Gaps = 17/211 (8%)
Query: 911 KQNTDPELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLK 970
K+ + EL + + L +S +E + +K + L + L+QQ +L+
Sbjct: 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR 308
Query: 971 EELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRK 1030
E L EE+E ++L+ + A+ + +L E ++++
Sbjct: 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEK-----------------LEELKE 351
Query: 1031 KEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQ 1090
+ + +EL E E+ + + +++L+ L+S+V + L E++ ++ +E+
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
Query: 1091 LQGKLAALGSETASLSSADVENDESYVQDEV 1121
L+ + L E L E + +Q E+
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAEL 442
Score = 47.7 bits (114), Expect = 4e-05
Identities = 56/272 (20%), Positives = 115/272 (42%), Gaps = 30/272 (11%)
Query: 808 QKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVENDESY 867
++EL+ELQ ++ E +L EL + ++E+L+ +++ L E L E
Sbjct: 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK---ELYALA 294
Query: 868 VQDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDKQNTDPELELKDLMAKH 927
+ SRLE Q + + + +++ E + + + EL +L K
Sbjct: 295 NEISRLE--------QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
Query: 928 ----------RSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSS 977
++L E+ L + R + ++ ++ L L+ QI L E+ +
Sbjct: 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406
Query: 978 NSSEEMEKLHKQLKQEQ--LLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKEC 1035
E +E ++L+QE LLK +L E+ + ++ + + R +E
Sbjct: 407 ARLERLEDRRERLQQEIEELLKKLEEAELKEL--QAELEELEEELEELQEELERLEEAL- 463
Query: 1036 RKLQQELTQEREKFNQVVVKCQKELQELQSQV 1067
+EL +E E+ Q + ++EL +LQ+++
Sbjct: 464 ----EELREELEEAEQALDAAERELAQLQARL 491
Score = 39.3 bits (92), Expect = 0.016
Identities = 35/190 (18%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Query: 946 VDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLA 1005
+ ++ +++L ++ ++ ++++ L EL++ EE+ +L++E + + LA
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294
Query: 1006 EIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQS 1065
++R + K + A++ ++ +E +EL + ++ + + + +++L+EL+
Sbjct: 295 NEISRLEQQ---KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351
Query: 1066 QVV---EENTSKLKLQMELDSK----DSEIEQLQGKLAALGSETASLSSADVENDESYVQ 1118
++ E EL+S+ + ++E L+ K+A L + ASL + ++E E+ ++
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL-NNEIERLEARLE 410
Query: 1119 DEVRSRSVTQ 1128
R Q
Sbjct: 411 RLEDRRERLQ 420
Score = 38.1 bits (89), Expect = 0.035
Identities = 35/161 (21%), Positives = 76/161 (47%), Gaps = 31/161 (19%)
Query: 948 YKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEI 1007
++ I++L + E+L+++I L++ L + EE+E+ +QL++E ++ ++ L +
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK- 733
Query: 1008 MNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQV 1067
D+ + E E +L++ + Q KEL EL++++
Sbjct: 734 -------------------DLARLEAEVEQLEERIAQL-----------SKELTELEAEI 763
Query: 1068 VEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSA 1108
E + + EL ++EIE+L+ ++ L E +L A
Sbjct: 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
Score = 35.4 bits (82), Expect = 0.24
Identities = 29/191 (15%), Positives = 86/191 (45%), Gaps = 3/191 (1%)
Query: 918 LELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSS 977
LE + + + + E ++ ++ + +K +++L ++ E L++++ E R+ S
Sbjct: 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE---ELSRQIS 729
Query: 978 NSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRK 1037
+++ +L +++Q + AQ +L E+ + +++ A+ + +E
Sbjct: 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
Query: 1038 LQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAA 1097
++L +E + + + + + EL L + L+ + + + +E L+ ++
Sbjct: 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
Query: 1098 LGSETASLSSA 1108
L + SL++
Sbjct: 850 LSEDIESLAAE 860
>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C.
Serine/Threonine Kinases (STKs), Atypical Protein Kinase
C (aPKC) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
aPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. aPKCs only require
phosphatidylserine (PS) for activation. They contain a
C2-like region, instead of a calcium-binding (C2) region
found in classical PKCs, in their regulatory domain.
There are two aPKC isoforms, zeta and iota. aPKCs are
involved in many cellular functions including
proliferation, migration, apoptosis, polarity
maintenance and cytoskeletal regulation. They also play
a critical role in the regulation of glucose metabolism
and in the pathogenesis of type 2 diabetes.
Length = 329
Score = 68.7 bits (168), Expect = 3e-12
Identities = 51/196 (26%), Positives = 93/196 (47%), Gaps = 6/196 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
G+G+Y V K ++ A+K I E + D E ++ HP ++ +
Sbjct: 4 GRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHS 63
Query: 628 IYKAVNNKDLYVVFEYMEN-DLN-KVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
++ + L+ V E++ DL + R + L + H R+ ++ L+++H +++RD
Sbjct: 64 CFQTESR--LFFVIEFVSGGDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERGIIYRD 121
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LK N+L+D IK+ D G+ + + + + T Y APEIL Y VD W
Sbjct: 122 LKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEIL-RGEDYGFSVDWW 180
Query: 746 SLGCILAEMLQSKPLF 761
+LG ++ EM+ + F
Sbjct: 181 ALGVLMFEMMAGRSPF 196
>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
beta. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, beta isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
The PKC beta isoforms (I and II), generated by
alternative splicing of a single gene, are
preferentially activated by hyperglycemia-induced DAG in
retinal tissues. This is implicated in diabetic
microangiopathy such as ischemia, neovascularization,
and abnormal vasodilator function. PKC-beta also plays
an important role in VEGF signaling. In addition,
glucose regulates proliferation in retinal endothelial
cells via PKC-betaI. PKC-beta is also being explored as
a therapeutic target in cancer. It contributes to tumor
formation and is involved in the tumor host mechanisms
of inflammation and angiogenesis.
Length = 323
Score = 68.5 bits (167), Expect = 4e-12
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG++G V A K + AIK + + D + T E L + P + +
Sbjct: 9 GKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHS 68
Query: 628 IYKAVNNKDLYVVFEYMEN-DLNKVIRD-KILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
++ ++ LY V EY+ DL I+ K+ H + ++ GL ++H+ +++RD
Sbjct: 69 CFQTMDR--LYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRD 126
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LK N+++D IKI D G+ + + T Y APEI I+ + Y VD W
Sbjct: 127 LKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEI-IAYQPYGKSVDWW 185
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIV 774
+ G +L EML + F G Q I+
Sbjct: 186 AFGVLLYEMLAGQAPFEGEDEDELFQSIM 214
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Fyn, together with Lck, plays a
critical role in T-cell signal transduction by
phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury.
Length = 260
Score = 67.3 bits (164), Expect = 5e-12
Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 32/231 (13%)
Query: 556 REDLQQQINLLKEGKGAYGIVYKA-YDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLK 614
RE LQ + K G G +G V+ ++ N K VA+K + + T + ++ E +
Sbjct: 5 RESLQL---IKKLGNGQFGEVWMGTWNGNTK--VAVKTL----KPGTMSPESFLEEAQIM 55
Query: 615 SFQRHPNIITMLDIYKAVNNKDLYVVFEYM-ENDLNKVIRD---KILKDVHIRYIMFQLC 670
RH ++ + Y V+ + +Y+V EYM + L ++D + LK ++ + Q+
Sbjct: 56 KKLRHDKLVQL---YAVVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVA 112
Query: 671 NGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIA-------T 723
G++YI +HRDL+ +NIL+ KI D GLAR + D+ EY A
Sbjct: 113 AGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDN-----EYTARQGAKFPI 167
Query: 724 RWYRAPEILISNRRYTHHVDIWSLGCILAEML-QSKPLFPGASTSHQLQLI 773
+W APE + R+T D+WS G +L E++ + + +PG + L+ +
Sbjct: 168 KW-TAPEAALYG-RFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQV 216
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 68.6 bits (167), Expect = 1e-11
Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 24/192 (12%)
Query: 609 EILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYMENDLNKVIRDKIL--KDV----HI 662
EIL L H NI+ + +I ++ N Y++ + + DL + D+ KD
Sbjct: 213 EILALG-RLNHENILKIEEILRSEANT--YMITQKYDFDLYSFMYDEAFDWKDRPLLKQT 269
Query: 663 RYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY-- 720
R IM QL + YIH K++HRD+K NI ++ I +GD G A +E +Y
Sbjct: 270 RAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAF-DYGW 328
Query: 721 IATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFP----GASTSHQLQLIVNL 776
+ T +PEIL + Y DIWS G IL +ML S P G QL I++
Sbjct: 329 VGTVATNSPEILAGD-GYCEITDIWSCGLILLDML-SHDFCPIGDGGGKPGKQLLKIIDS 386
Query: 777 VR------PNPP 782
+ P+PP
Sbjct: 387 LSVCDEEFPDPP 398
>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine
Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyk2 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase catalytic domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Tyk2 is widely expressed in many tissues. It is involved
in signaling via the cytokine receptors IFN-alphabeta,
IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell
surface urokinase receptor (uPAR) signaling and plays a
role in modulating vascular smooth muscle cell (VSMC)
functional behavior in response to injury. Tyk2 is also
important in dendritic cell function and T helper (Th)1
cell differentiation. A homozygous mutation of Tyk2 was
found in a patient with hyper-IgE syndrome (HIES), a
primary immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 283
Score = 66.8 bits (163), Expect = 1e-11
Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 27/210 (12%)
Query: 561 QQINLLKEGKGAYGIVYKAYDKNNK---QYVAIKKIFEAFRNKTDAQRT---YREILFLK 614
++I +L EG +Y YD N + VA+K + + Q T +EI LK
Sbjct: 7 KKIRVLGEGHFGKVSLYC-YDPANDGTGEMVAVK----TLKRECGQQNTSGWKKEINILK 61
Query: 615 SFQRHPNIITMLDIYKAVNNKDLYVVFEYME-NDLNKVIRDKILKDVHIRYIMFQLCNGL 673
+ H NI+ K L ++ EY+ L + L + Q+C G+
Sbjct: 62 TLY-HENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGM 120
Query: 674 SYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATR--------W 725
+Y+H+ +HRDL N+L+D +KIGD GLA+++ + EY R W
Sbjct: 121 AYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGH----EYYRVREDGDSPVFW 176
Query: 726 YRAPEILISNRRYTHHVDIWSLGCILAEML 755
Y A E L N ++++ D+WS G L E+L
Sbjct: 177 Y-AVECLKEN-KFSYASDVWSFGVTLYELL 204
>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, in response to
various stimuli such as growth factors, hormones,
neurotransmitters, cellular stress, and pro-inflammatory
cytokines. This triggers phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) in the
C-terminal extension of NTD, which facilitates the
phosphorylation of the A-loop and activates the NTD,
which in turn phosphorylates downstream targets. MSKs
are predominantly nuclear proteins. They are widely
expressed in many tissues including heart, brain, lung,
liver, kidney, and pancreas. There are two isoforms of
MSK, called MSK1 and MSK2.
Length = 288
Score = 66.4 bits (162), Expect = 2e-11
Identities = 50/198 (25%), Positives = 96/198 (48%), Gaps = 13/198 (6%)
Query: 568 EGKGAYGIVY---KAYDKNNKQYVAIK---KIFEAFRNKTDAQRTYREILFLKSFQRHPN 621
G GAYG V+ K + + A+K K + KT A+ T E L++ +R P
Sbjct: 8 LGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKT-AEHTRTERQVLEAVRRCPF 66
Query: 622 IITMLDIYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHAC 679
++T+ Y + L+++ +Y+ + + + + +R + ++ L ++H
Sbjct: 67 LVTLH--YAFQTDTKLHLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQL 124
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARS-LSDSKECLTEYIATRWYRAPEILISNRR- 737
+++RD+K NIL+D + + D GL++ L++ +E + T Y APE++
Sbjct: 125 GIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGG 184
Query: 738 YTHHVDIWSLGCILAEML 755
+ VD WSLG + E+L
Sbjct: 185 HDKAVDWWSLGVLTFELL 202
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. In
addition, Csk also shows Src-independent functions. It
is a critical component in G-protein signaling, and
plays a role in cytoskeletal reorganization and cell
migration.
Length = 256
Score = 65.8 bits (160), Expect = 2e-11
Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 553 MKDREDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILF 612
MK+ + L Q I GKG +G V + NK VA+K I +N AQ E
Sbjct: 5 MKELK-LLQTI-----GKGEFGDVMLGDYRGNK--VAVKCI----KNDATAQAFLAEASV 52
Query: 613 LKSFQRHPNIITMLDIYKAVNNKDLYVVFEYM-ENDLNKVIRDK---ILKDVHIRYIMFQ 668
+ RH N++ +L + LY+V EYM + L +R + +L +
Sbjct: 53 MTQL-RHSNLVQLLGVI-VEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLD 110
Query: 669 LCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRA 728
+C + Y+ A +HRDL N+L+ + K+ D GL + S +++ T + +W A
Sbjct: 111 VCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD--TGKLPVKW-TA 167
Query: 729 PEILISNRRYTHHVDIWSLGCILAEM 754
PE L ++++ D+WS G +L E+
Sbjct: 168 PEAL-REKKFSTKSDVWSFGILLWEI 192
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 68.6 bits (168), Expect = 2e-11
Identities = 121/574 (21%), Positives = 239/574 (41%), Gaps = 61/574 (10%)
Query: 23 GELKDLLERERREMSQLEERQRQLSEQYEAVSARE----------TALRDEMGQLEKNLT 72
E + LE RE++++ +L E+ E + L E+ LE +
Sbjct: 196 KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKR 255
Query: 73 ILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSA 132
L ++E + R + E KK+ E + + ++ ++LK +AE +L + E
Sbjct: 256 KLEEKIRELEERIE---ELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELR- 310
Query: 133 GEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTE 192
+E L++E+ ++ +I E K + + +EL+ +L+ L
Sbjct: 311 -------------EIEKRLSRLEEEINGIEERIK-ELEEKEERL---EELKKKLKELEKR 353
Query: 193 LER--NKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEK 250
LE +H + A+ + E++ + L ELE + + ++ E+ + +
Sbjct: 354 LEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITAR 413
Query: 251 VSSLEKECASLSL---ELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIV----KELKD 303
+ L+KE L ELK A+ + R E + ++ + A ++ + KE+++
Sbjct: 414 IGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEE 473
Query: 304 LMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKS 363
K R +L E +L KE E+ K + + +K+ E+ ++ NL +ELEK
Sbjct: 474 KERKLRKELRELEKVLK--KESELIKLKELAEQLKELEEKLKKYNL--------EELEKK 523
Query: 364 KTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLK 423
+++++ K L + + LK + +L ++ L E + +E +L
Sbjct: 524 AEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELG 583
Query: 424 TKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRL- 482
+ SVE+L+ + L++ + L K EL+ E E + EL++ +L
Sbjct: 584 FE-SVEELE-ERLKELEPFYNEYLEL-KDAEKELEREEKELKKLEEELDKAFEELAETEK 640
Query: 483 QLAVARADSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESL------LS 536
+L R + E L + +EE EL +E EL L A+ +E + L
Sbjct: 641 RLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
Query: 537 NGKEREVDYKKSIDQLMKDREDLQQQINLLKEGK 570
E KK +++L K E +++ +K+ K
Sbjct: 701 EELEEREKAKKELEKLEKALERVEELREKVKKYK 734
Score = 39.3 bits (92), Expect = 0.014
Identities = 79/357 (22%), Positives = 157/357 (43%), Gaps = 32/357 (8%)
Query: 29 LERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILR----------HDL 78
E+ +E+ +LE+ + ++ E+ ++AR L+ E+ +L+K + L+ +L
Sbjct: 386 PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGREL 445
Query: 79 KESQRRADNESETK--KKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQM 136
E R+ E T K+ E L+ I + KL+ E ++ K+ +EL K EQ
Sbjct: 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQ- 504
Query: 137 VVELQNILATL---EMERDT-LQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTE 192
+ EL+ L E+E+ +++ K+ E S + + +EL+ +L L +
Sbjct: 505 LKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKK 564
Query: 193 LER------NKHRELQ------LAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQL 240
L+ +EL+ + E L E + L+ ELER + +L
Sbjct: 565 LDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKL 624
Query: 241 AEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAH---EETQKSRMVNKEEASVEI 297
E+ E+++ EK L EL+ + +Y +E E + SR + A +E
Sbjct: 625 EEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEE 684
Query: 298 VKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGA 354
+++ ++ + K L + K+ +K+++++ + RE +++ LLKE A
Sbjct: 685 LEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERA 741
Score = 34.7 bits (80), Expect = 0.39
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 930 DLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQ 989
+L K KE+ + K I L K+ E L++ L E +K EE+ +L K+
Sbjct: 519 ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKE 578
Query: 990 LKQEQLLKAQAVNK----LAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQE 1045
L++ + + + L N + K + ++ ++EKE +KL++EL +
Sbjct: 579 LEELGFESVEELEERLKELEPFYNEYL-------ELKDAEKELEREEKELKKLEEELDKA 631
Query: 1046 REKFNQV---VVKCQKELQELQSQVVEENTSK-----LKLQMELDSKDSEIEQLQGKL 1095
E+ + + + +KEL+EL+ + EE + L+L EL +E+E+L+ +
Sbjct: 632 FEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689
>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C iota.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, iota isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-iota is directly implicated in carcinogenesis. It is
critical to oncogenic signaling mediated by Ras and
Bcr-Abl. The PKC-iota gene is the target of
tumor-specific gene amplification in many human cancers,
and has been identified as a human oncogene. In addition
to its role in transformed growth, PKC-iota also
promotes invasion, chemoresistance, and tumor cell
survival. Expression profiling of PKC-iota is a
prognostic marker of poor clinical outcome in several
human cancers. PKC-iota also plays a role in
establishing cell polarity, and has critical embryonic
functions.
Length = 329
Score = 66.2 bits (161), Expect = 2e-11
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 6/196 (3%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNK-TDAQRTYREILFLKSFQRHPNIITMLD 627
G+G+Y V K ++ A+K + + N D E + HP ++ +
Sbjct: 4 GRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHS 63
Query: 628 IYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
++ L+ V EY+ + + R + L + H R+ ++ L+Y+H +++RD
Sbjct: 64 CFQT--ESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRD 121
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LK N+L+D IK+ D G+ + + + + T Y APEIL Y VD W
Sbjct: 122 LKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEIL-RGEDYGFSVDWW 180
Query: 746 SLGCILAEMLQSKPLF 761
+LG ++ EM+ + F
Sbjct: 181 ALGVLMFEMMAGRSPF 196
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 65.3 bits (159), Expect = 2e-11
Identities = 73/271 (26%), Positives = 128/271 (47%), Gaps = 41/271 (15%)
Query: 555 DREDLQQQINLLKE-GKGAYGIVYKAYDKNNKQY-VAIKKIFEAFRNKTDAQRTYREILF 612
D +DL LKE G G +G+V Y K QY VAIK I E ++ + + ++
Sbjct: 2 DPKDL----TFLKELGTGQFGVV--KYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMK 55
Query: 613 LKSFQRHPNIITMLDIYKAVNNKDLYVVFEYMEND-LNKVIRD--KILKDVHIRYIMFQL 669
L H ++ + + + +Y+V EYM N L +R+ K + + + +
Sbjct: 56 LS----HEKLVQLYGV--CTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDV 109
Query: 670 CNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIAT------ 723
C G++Y+ + + +HRDL N L+D +K+ D GL+R + D EY ++
Sbjct: 110 CEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDD-----EYTSSVGSKFP 164
Query: 724 -RWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKP--LFPGASTSHQLQLIVNLVR 778
RW PE+L+ + +++ D+W+ G ++ E+ L P F + T ++ + L R
Sbjct: 165 VRW-SPPEVLLYS-KFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRLYR 222
Query: 779 PNPPHADKFYAGFKS-----KHEREKFNQVV 804
P+ ++K YA S ER F Q++
Sbjct: 223 PHLA-SEKVYAIMYSCWHEKAEERPTFQQLL 252
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 65.7 bits (160), Expect = 2e-11
Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 33/207 (15%)
Query: 569 GKGAYGIV----YKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
G+G +G V Y N + VA+K + A +EI L++ H NI+
Sbjct: 13 GEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIAD-LKKEIEILRNLY-HENIVK 70
Query: 625 MLDIYKAVNNKD------LYVVF-------EYMENDLNKVIRDKILKDVHIRYIMFQLCN 671
YK + +D L + F EY+ + NK+ LK +Y + Q+C
Sbjct: 71 ----YKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKIN----LKQQL-KYAV-QICK 120
Query: 672 GLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLT---EYIATRWYRA 728
G+ Y+ + + +HRDL N+L++ +KIGD GL +++ KE T + + ++ A
Sbjct: 121 GMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYA 180
Query: 729 PEILISNRRYTHHVDIWSLGCILAEML 755
PE LI ++ Y D+WS G L E+L
Sbjct: 181 PECLIQSKFYIAS-DVWSFGVTLYELL 206
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 64.9 bits (158), Expect = 5e-11
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 32/189 (16%)
Query: 588 VAIKKIFEAFRNKTDAQRTYREILFLKSFQ-----RHPNIITMLDIYKAVNNKDLYVVFE 642
VA+K + + DA + R FLK + + PNII +L + + + L ++ E
Sbjct: 49 VAVKML------REDANKNARND-FLKEIKIMSRLKDPNIIRLLAV--CITSDPLCMITE 99
Query: 643 YMEN-DLNKVIRDKILKD------------VHIRYIMFQLCNGLSYIHACKVMHRDLKPS 689
YMEN DLN+ + ++ + ++ Q+ +G+ Y+ + +HRDL
Sbjct: 100 YMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATR 159
Query: 690 NILIDKSCSIKIGDLGLARSLSDSKECLTEYIAT---RWYRAPEILISNRRYTHHVDIWS 746
N L+ K+ +IKI D G++R+L + A RW IL+ ++T D+W+
Sbjct: 160 NCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLG--KFTTASDVWA 217
Query: 747 LGCILAEML 755
G L E+L
Sbjct: 218 FGVTLWEIL 226
>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed.
Length = 932
Score = 67.1 bits (164), Expect = 5e-11
Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 38/220 (17%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAF-RNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG G VY AYD + VA+KKI E N +R RE + + HP I+ +
Sbjct: 11 GKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAK-IAADLIHPGIVPVYS 69
Query: 628 IYKAVNNKDL-YVVFEYMENDLNKVI------RDKILKDVHIRY-------IMFQLCNGL 673
I ++ D Y Y+E K + ++ + K++ + I ++C +
Sbjct: 70 IC---SDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATI 126
Query: 674 SYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLT--------------- 718
Y+H+ V+HRDLKP NIL+ + I D G A +E L
Sbjct: 127 EYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMT 186
Query: 719 ---EYIATRWYRAPEILISNRRYTHHVDIWSLGCILAEML 755
+ + T Y APE L+ + DI++LG IL +ML
Sbjct: 187 IPGKIVGTPDYMAPERLLGVPA-SESTDIYALGVILYQML 225
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs),
MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK2 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 331
Score = 65.1 bits (158), Expect = 6e-11
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 18/193 (9%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIK----KIFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
G G G+V K K + +A K +I A RN+ RE+ L P I+
Sbjct: 14 GAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQI-----IRELQVLHECNS-PYIVG 67
Query: 625 MLDIYKAVNNKDLYVVFEYMEN-DLNKVIRD-KILKDVHIRYIMFQLCNGLSYI-HACKV 681
+ ++ ++ + E+M+ L++V+++ K + + + + + GL+Y+ ++
Sbjct: 68 FYGAF--YSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQI 125
Query: 682 MHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHH 741
MHRD+KPSNIL++ IK+ D G++ L DS ++ TR Y +PE L Y+
Sbjct: 126 MHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERL-QGTHYSVQ 182
Query: 742 VDIWSLGCILAEM 754
DIWS+G L E+
Sbjct: 183 SDIWSMGLSLVEL 195
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase
(PTK) family; Hematopoietic cell kinase (Hck); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Hck is a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Hck is present in myeloid and lymphoid
cells that play a role in the development of cancer. It
may be important in the oncogenic signaling of the
protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic
precursors, suggesting a possible role in the
development of acute myeloid leukemia (AML). In
addition, Hck is essential in regulating the
degranulation of polymorphonuclear leukocytes (PMNs).
Genetic polymorphisms affect the expression level of
Hck, which affects PMN mediator release and influences
the development of chronic obstructive pulmonary disease
(COPD).
Length = 260
Score = 63.9 bits (155), Expect = 7e-11
Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 31/215 (14%)
Query: 567 KEGKGAYGIVYKA-YDKNNKQYVAIKKI------FEAFRNKTDAQRTYREILFLKSFQRH 619
K G G +G V+ A Y+K+ K VA+K + EAF + + +K+ Q
Sbjct: 13 KLGAGQFGEVWMATYNKHTK--VAVKTMKPGSMSVEAFLAEAN---------VMKTLQHD 61
Query: 620 PNIITMLDIYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMF--QLCNGLSY 675
++ ++ V + +Y++ E+M L+ + D+ K + I F Q+ G+++
Sbjct: 62 ----KLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 117
Query: 676 IHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTE--YIATRWYRAPEILI 733
I +HRDL+ +NIL+ S KI D GLAR + D++ E +W APE I
Sbjct: 118 IEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKW-TAPEA-I 175
Query: 734 SNRRYTHHVDIWSLGCILAEMLQ-SKPLFPGASTS 767
+ +T D+WS G +L E++ + +PG S
Sbjct: 176 NFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP 210
>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
Byr1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Byr1 from
Schizosaccharomyces pombe, FUZ7 from Ustilago maydis,
and related proteins. Byr1 phosphorylates its downstream
target, the MAPK Spk1, and is regulated by the MAPKKK
Byr2. The Spk1 cascade is pheromone-responsive and is
essential for sporulation and sexual differentiation in
fission yeast. FUZ7 phosphorylates and activates its
target, the MAPK Crk1, which is required in mating and
virulence in U. maydis.
Length = 284
Score = 64.4 bits (157), Expect = 7e-11
Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 24/186 (12%)
Query: 618 RHPNIITMLDIYKAVNNKDLYVVFEYMEND-LNKVIRD--KILKDVHIRYIMFQLCNGLS 674
R P I++ + +N ++ + E+M+ L+++ + I ++ + I + GL+
Sbjct: 61 RSPYIVSFYGAF--LNENNICMCMEFMDCGSLDRIYKKGGPIPVEI-LGKIAVAVVEGLT 117
Query: 675 YIH-ACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILI 733
Y++ ++MHRD+KPSNIL++ IK+ D G++ L +S ++ T Y +PE I
Sbjct: 118 YLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINS--IADTFVGTSTYMSPE-RI 174
Query: 734 SNRRYTHHVDIWSLGCILAEMLQSKPLFP----------GASTSHQLQLIVNLVRPNPPH 783
+YT D+WSLG + E+ K FP L L+ +V+ PP
Sbjct: 175 QGGKYTVKSDVWSLGISIIELALGK--FPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPR 232
Query: 784 --ADKF 787
+ F
Sbjct: 233 LPSSDF 238
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 66.3 bits (162), Expect = 8e-11
Identities = 103/558 (18%), Positives = 228/558 (40%), Gaps = 16/558 (2%)
Query: 20 QANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLK 79
Q EL+ +E +++LEE + +L E + E+ + + E+ L L L+
Sbjct: 225 QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLE 284
Query: 80 ESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVE 139
E + + + E +++ E + + + L+ E +L+ L + E++ E
Sbjct: 285 ELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESE 344
Query: 140 LQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHR 199
L+ + L++ + L+ ++ + +A+ K+LE +Q L EL
Sbjct: 345 LEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAA 404
Query: 200 ELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECA 259
++ E L E LE+ R E + ++ E + +++ ++C
Sbjct: 405 LEEIQE---ELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCP 461
Query: 260 SLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLL 319
EL +++E+ E + + +E + + EL++ + + +L E L
Sbjct: 462 VCGQELPEE---HEKELLELYELELEE-LEEELSREKEEAELREEIEELEKELRELEEEL 517
Query: 320 SNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQV------EQE 373
E E K+ +++ ++ E+L +++ LKE +L+Q E+ + L+ ++ +E
Sbjct: 518 IELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEE 577
Query: 374 QAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQ- 432
+ + +L LK + ++L ++ L E +++E + + + + E+L+
Sbjct: 578 LRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELES 637
Query: 433 -MKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADS 491
+++L Q E E+ + +++E E R + +E E +L +
Sbjct: 638 ELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEEL 697
Query: 492 EALARSIAEETVGELEKEKTMKELE-LKDLMAKHRSDLSSKESLLSNGKEREVDYKKSID 550
E L + E E E+ ++ELE K + + + +L E L +E K+
Sbjct: 698 EQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKLGKAGL 757
Query: 551 QLMKDREDLQQQINLLKE 568
+ R L Q E
Sbjct: 758 RADILRNLLAQIEAEANE 775
Score = 56.7 bits (137), Expect = 8e-08
Identities = 96/528 (18%), Positives = 193/528 (36%), Gaps = 32/528 (6%)
Query: 73 ILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSA 132
+ + E E + KA++ E + + +
Sbjct: 163 LFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQ 222
Query: 133 GEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTE 192
EQ EL+ + LE L++E L+ ++ ++ + K E L+ L
Sbjct: 223 EEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERL 282
Query: 193 LERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVS 252
LE + + +L E R + E LE L EL + E EK+
Sbjct: 283 LEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLE 342
Query: 253 SLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVK---ELKDLMAKHR 309
S +E A EL + +E+ E + + E ++ + ELK+ +A+
Sbjct: 343 SELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELS 402
Query: 310 SDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQ 369
+ L + L ++ + ++ +++L ++ + L++QIN L+ + EL +
Sbjct: 403 AALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPV 462
Query: 370 VEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVE 429
QE + +L E E A LRE +E+E +L+ +
Sbjct: 463 CGQEL--PEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIEL 520
Query: 430 DLQMKELQDQLET---------EQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTH 480
+ L+++LE E+ K Q +LKEEL + + EL+E +L
Sbjct: 521 LELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRL 580
Query: 481 -----------RLQLAVARADSEALARSIAEE-------TVGELEKEKTMKELELKDLMA 522
R +L + + L +++ + E E E E EL+ +
Sbjct: 581 LRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELE 640
Query: 523 KHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGK 570
K +E L + +E E ++ ++ ++ + ++ + L ++ +
Sbjct: 641 KLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLE 688
Score = 36.3 bits (84), Expect = 0.12
Identities = 49/314 (15%), Positives = 130/314 (41%), Gaps = 15/314 (4%)
Query: 796 EREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAAL-----G 850
E + + + + Q+EL+EL+ ++ E +L+ E+ + +I QL+ K +
Sbjct: 397 ELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGA 456
Query: 851 SETASLSSADVENDESYVQDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSEN- 909
E + ++ + E + ++ + R + + +
Sbjct: 457 GEKCPVCGQELPEEHEKELLELYELELEELEEE-LSREKEEAELREEIEELEKELRELEE 515
Query: 910 --DKQNTDPELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQIN 967
+ E ++L K + E L ++ + + + + ++ ED Q++
Sbjct: 516 ELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQ---LQQLKEELRQLEDRLQELK 572
Query: 968 LLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSAD 1027
L EELR EE+E+L ++LK+ + + +L+++ + + + +++ +
Sbjct: 573 ELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQL--EELLQSLELSEAENELEE 630
Query: 1028 VRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSE 1087
++ + + + E + + +++++EL++++ E + +L+ K E
Sbjct: 631 AEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEE-QLEEKLEE 689
Query: 1088 IEQLQGKLAALGSE 1101
+EQL+ +L L E
Sbjct: 690 LEQLEEELEQLREE 703
Score = 35.9 bits (83), Expect = 0.17
Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 9/173 (5%)
Query: 942 KEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAV 1001
K + + + + +L++D EDL + + +EL+K EE E ++L+QE + +
Sbjct: 184 KAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQE--EEELEQEIEALEERL 241
Query: 1002 NKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQ 1061
+L E R + + KA ++ E E K+++E +E E+ + + + + L+
Sbjct: 242 AELEEEKERLE-------ELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLE 294
Query: 1062 ELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVENDE 1114
EL+ ++ E L+ L+ + +E+L+ L L + E +E
Sbjct: 295 ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEE 347
Score = 32.8 bits (75), Expect = 1.3
Identities = 56/301 (18%), Positives = 126/301 (41%), Gaps = 33/301 (10%)
Query: 809 KELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVENDESYV 868
K +E ++ + L+ + EIE+L+ +L L + L ++
Sbjct: 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEE---LLEKLKS 326
Query: 869 QDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDKQNTDPELELKDLMAKHR 928
+ RLE + ++ E ++ + L++ + +
Sbjct: 327 LEERLEKL--EEKLEKLESE-----------------LEELAEEKNELAKLLEERLKELE 367
Query: 929 SDLSSKESLLSNGKEREVDYKKSIDQLMKDR-------EDLQQQINLLKEELRKSSNSSE 981
L E L ER +++I +L ++ E++Q+++ L++EL + E
Sbjct: 368 ERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELE 427
Query: 982 EMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSAD--VRKKEKECRKLQ 1039
E+E+ K+L+++ +AE+ + C + + E E +L+
Sbjct: 428 ELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELE 487
Query: 1040 QELTQEREK--FNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAA 1097
+EL++E+E+ + + + +KEL+EL+ +++E + L+ EL+ K ++E L +L
Sbjct: 488 EELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEE 547
Query: 1098 L 1098
L
Sbjct: 548 L 548
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 66.2 bits (162), Expect = 1e-10
Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 14/246 (5%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQR 83
EL L R++ ++E+ QL ++ E + R L +++ LE+ + ++ +LKE +
Sbjct: 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
Query: 84 RADNESETKKKAEVNLQVISDM--HEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQ 141
R + E K E L + H ++ ++L ++ + + EQ + L
Sbjct: 766 RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825
Query: 142 NILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHREL 201
LE E LQ++ L+ +I + L G+ + L ELE +
Sbjct: 826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-------ENLNGKKEELEEELEELEAALR 878
Query: 202 QLAEDNRHLGEKVSSLEKECR-----LQALNTELERNKHRELQLAEDNRHLGEKVSSLEK 256
L L ++ LE + R ++ L ++E+ + R +L L E++S +E
Sbjct: 879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
Query: 257 ECASLS 262
Sbjct: 939 PKGEDE 944
Score = 62.4 bits (152), Expect = 2e-09
Identities = 63/287 (21%), Positives = 120/287 (41%), Gaps = 21/287 (7%)
Query: 54 SARETALRDEMGQLEKNLTILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEA 113
A LR+ + L++ L+ L+ +L+ + R D S+ A + I E+L+ E
Sbjct: 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732
Query: 114 ETATRLRKQSAE----LTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQAKISQER 169
E ++ E L + + EL+ + LE + L++ + L+A++S R
Sbjct: 733 EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR 792
Query: 170 SSKTQAV-----NLHKELEGRLQALNTELERNKHRELQLAED--------NRHLGEKVSS 216
+ QA +E RL+ + +L R E + E L E++ S
Sbjct: 793 IPEIQAELSKLEEEVSRIEARLREIEQKLNR-LTLEKEYLEKEIQELQEQRIDLKEQIKS 851
Query: 217 LEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEV 276
+EKE ++ LN + E + +L R L ++ L+KE L +L+ + + +E+
Sbjct: 852 IEKE--IENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE-RKIEEL 908
Query: 277 RAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGK 323
A E ++ R+ + + +EL ++ D E LS
Sbjct: 909 EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED 955
Score = 60.9 bits (148), Expect = 4e-09
Identities = 67/379 (17%), Positives = 155/379 (40%), Gaps = 45/379 (11%)
Query: 89 SETKKKAEVNLQVISDMHEKLKTEAETATR-----LRKQSAELTVAKSAGEQMVVELQNI 143
E ++ ++ + E+L+ E E A R K+ E E + + + I
Sbjct: 183 EENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAI 242
Query: 144 LATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQL 203
+ +L++E+ L +IS+ + L +EL +++ L E +L++
Sbjct: 243 ER----QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE------EQLRV 292
Query: 204 AEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSL 263
E L +++SLE+ + ELE + R +L + L ++ LE+E
Sbjct: 293 KEKIGELEAEIASLERS--IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK 350
Query: 264 ELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGK 323
E ELK+ + R++L + + +
Sbjct: 351 RRDKLT--------------------------EEYAELKEELEDLRAELEEVDKEFAETR 384
Query: 324 EREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSD 383
+ DY++ +++L ++ +L+++++ L+E EL++ E+ L + + +AK L+ +
Sbjct: 385 DELKDYREKLEKLKREINELKRELDRLQE--ELQRLSEELADLNAAIAGIEAKINELEEE 442
Query: 384 LSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETE 443
+ E + + EQL+ +++ + +++EEY +++ + S ++ E + Q
Sbjct: 443 KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502
Query: 444 QYFSTLYKTQAHELKEELD 462
+ + LK +
Sbjct: 503 EERVRGGRAVEEVLKASIQ 521
Score = 58.5 bits (142), Expect = 2e-08
Identities = 50/268 (18%), Positives = 122/268 (45%), Gaps = 8/268 (2%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARET-ALRDEMGQLEKNLTILRHDLKESQ 82
+L + + + + ++E+ +L+++ + + E +++++G+LE + L + E +
Sbjct: 255 KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKE 314
Query: 83 RRADNESETKKKAEVNLQVISDMHEKLKTEAET-ATRLRKQSAELTVAKSAGEQMVVELQ 141
R ++ E K E + + E+L+ E E R K + E K E + EL+
Sbjct: 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE 374
Query: 142 NI---LATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKH 198
+ A E ++++ L+ +I++ + + + L L LN + +
Sbjct: 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434
Query: 199 RELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKEC 258
+ +L E+ ++ ++E +L+ L +L + + L E+ + +++S L++E
Sbjct: 435 KINELEEEKEDKALEIK--KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492
Query: 259 ASLSLELKAAQAQYQQEVRAHEETQKSR 286
A + +A++ + + RA EE K+
Sbjct: 493 AEAEAQARASE-ERVRGGRAVEEVLKAS 519
Score = 57.8 bits (140), Expect = 4e-08
Identities = 77/385 (20%), Positives = 163/385 (42%), Gaps = 52/385 (13%)
Query: 99 LQVISDMHEKLKTEAETA----TRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTL 154
LQ + + E LK E + R+ + EL+ S + + E++ + LE E + L
Sbjct: 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL 735
Query: 155 QQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLG-EK 213
++ + L+ +S + KELE R++ L +L + E L + L +
Sbjct: 736 KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK---LEEALNDLEARLSHSR 792
Query: 214 VSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQ 273
+ ++ E L L E+ R + R + +E++ L+LE + + + Q
Sbjct: 793 IPEIQAE--LSKLEEEVSRIEAR--------------LREIEQKLNRLTLEKEYLEKEIQ 836
Query: 274 QEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSI 333
+ + ++ I KE+++L K E L + D + +
Sbjct: 837 ELQEQRIDLKEQI--------KSIEKEIENLNGK----KEELEEELEELEAALRDLESRL 884
Query: 334 DQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAH 393
L K+R++L+ A+LR+ K + L++Q+E+++ + L++ L E +
Sbjct: 885 GDLKKERDELE---------AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
Query: 394 L---KAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLY 450
+ K +E++ E L + + ++ + R++E + M +Q+ E + L
Sbjct: 936 IEDPKGEDEEIPEEELSLEDVQAELQR---VEEEIRALEPVNMLAIQEYEEVLKRLDELK 992
Query: 451 KTQAHELKEELDERSRNILELEEER 475
+ +A +L+EE I E E+++
Sbjct: 993 EKRA-KLEEERKAILERIEEYEKKK 1016
Score = 55.1 bits (133), Expect = 2e-07
Identities = 67/309 (21%), Positives = 137/309 (44%), Gaps = 29/309 (9%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEA----VSARETALRDEMGQLEKNLTILRHDLK 79
E + LER RRE + E Q L E+ E + + AL + +E+ L L +L+
Sbjct: 195 EKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELE 254
Query: 80 ESQRRADNESETKKKAEVNLQVISDMHEKLKTEAE-TATRLRKQSAELTV-------AKS 131
+ E +K+ E Q++ ++++K+K E R++++ EL + +
Sbjct: 255 KLTEEIS---ELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA 311
Query: 132 AGEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNT 191
E+ + + + LA LE E D L E+ L+ +I +ER + + + EL+ L+ L
Sbjct: 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA 371
Query: 192 ELERNKHRELQLAEDNRHLGEKVSSLEKEC-----RLQALNTELERNKHRELQLAEDNRH 246
ELE ++ ++ +++ ++ + L EL+R + +L+E+
Sbjct: 372 ELE-------EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD 424
Query: 247 LGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMA 306
L ++ +E + L E + + +++ E+ ++K E + +KE D +
Sbjct: 425 LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA--DLSKYEQELYDLKEEYDRVE 482
Query: 307 KHRSDLSSK 315
K S L +
Sbjct: 483 KELSKLQRE 491
Score = 50.8 bits (122), Expect = 5e-06
Identities = 50/232 (21%), Positives = 103/232 (44%), Gaps = 12/232 (5%)
Query: 352 EGAELRQELEKSK----TLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAM 407
E LR+ LE K +LQS++ + + + L +LS + + ++ EQL E
Sbjct: 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734
Query: 408 LREAKRNIEEEYHKLKTKRSVEDLQMKEL-----QDQLETEQYFSTLYKTQAHELKEELD 462
L+E +EE+ L+ + ++KEL + + + + L +A +
Sbjct: 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP 794
Query: 463 ERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKEKTMKELELKDLMA 522
E + +LEEE + RL+ + + L + E+ + EL++++ + ++K +
Sbjct: 795 EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK 854
Query: 523 KHRSDLSSKESLLSNGKEREV---DYKKSIDQLMKDREDLQQQINLLKEGKG 571
+ + KE L +E E D + + L K+R++L+ Q+ L+
Sbjct: 855 EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
Score = 48.1 bits (115), Expect = 3e-05
Identities = 54/246 (21%), Positives = 107/246 (43%), Gaps = 31/246 (12%)
Query: 333 IDQLMKDREDLQQQINLLKEGAELRQELEKSK--TLQSQVEQEQAKKFSLQSDLSVQTSE 390
ID+ + E L+++ + L +E + + L + E + +K +++ L+ E
Sbjct: 193 IDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEE 252
Query: 391 AAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLY 450
L +L + E ++ +EE K+K E L++KE
Sbjct: 253 LEKLTEEISELEKRLE---EIEQLLEELNKKIKDLGEEEQLRVKE--------------- 294
Query: 451 KTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADS-----EALARSIAEETVGE 505
+ EL+ E+ R+I E E E D RL A D E L R I EE
Sbjct: 295 --KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK-- 350
Query: 506 LEKEKTMKEL-ELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQIN 564
++K +E ELK+ + R++L + + ++ DY++ +++L ++ +L+++++
Sbjct: 351 -RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
Query: 565 LLKEGK 570
L+E
Sbjct: 410 RLQEEL 415
Score = 45.4 bits (108), Expect = 2e-04
Identities = 39/205 (19%), Positives = 87/205 (42%), Gaps = 16/205 (7%)
Query: 919 ELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEEL----- 973
LK ++ +S+L E+ L + D + I ++ K+ E L+Q+ LKE L
Sbjct: 685 GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE 744
Query: 974 ------RKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEI--MNRKDINTTCKGKSKASS 1025
++ N E+++L ++++ + + L ++ + +
Sbjct: 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLE 804
Query: 1026 ADVRKKEKECRKLQQEL---TQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELD 1082
+V + E R+++Q+L T E+E + + + Q++ +L+ Q+ L + +
Sbjct: 805 EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
Query: 1083 SKDSEIEQLQGKLAALGSETASLSS 1107
+ E+E+L+ L L S L
Sbjct: 865 ELEEELEELEAALRDLESRLGDLKK 889
Score = 45.1 bits (107), Expect = 3e-04
Identities = 71/329 (21%), Positives = 141/329 (42%), Gaps = 30/329 (9%)
Query: 212 EKVSSLEKECRLQALNTELERNK---HRELQLAEDNRHLGEKVSSLEKECASLSLELKAA 268
E++ + E R Q ER K ++ L + E + E L + +A
Sbjct: 187 ERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEA----LERQKEAI 242
Query: 269 QAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVD 328
+ Q + E + E+ EI + L++L K + DL +E L K E++
Sbjct: 243 ERQLA-SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK-DLGEEEQLRVKEKIGELE 300
Query: 329 -----YKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSD 383
++SI + ++ ED ++++ L+ E+ + L + + L+ ++E+E+ ++ L +
Sbjct: 301 AEIASLERSIAEKERELEDAEERLAKLEA--EIDKLLAEIEELEREIEEERKRRDKLTEE 358
Query: 384 LSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETE 443
+ E L+A E++ E A R+ ++ E+ KLK + +L+ + + Q E +
Sbjct: 359 YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI--NELKRELDRLQEELQ 416
Query: 444 QYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRL-----QLAVARADSEALARSI 498
+ L +L + I ELEEE+ D + +L AD + +
Sbjct: 417 RLSEEL-----ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
Query: 499 A--EETVGELEKEKTMKELELKDLMAKHR 525
+E +EKE + + EL + A+ R
Sbjct: 472 YDLKEEYDRVEKELSKLQRELAEAEAQAR 500
Score = 44.3 bits (105), Expect = 4e-04
Identities = 42/206 (20%), Positives = 97/206 (47%), Gaps = 9/206 (4%)
Query: 363 SKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKL 422
S++ +++++ + + L+ +LS SE ++ R ++LS E++ IE+E +L
Sbjct: 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728
Query: 423 KTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLT--- 479
+ + +++EL++ L + + K++ EL+ ++E ++ +LEE DL
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
Query: 480 --HRLQLAVARADSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSN 537
R+ A S E + E+E++ LE + L ++ + +
Sbjct: 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL----EKEIQELQEQRID 844
Query: 538 GKEREVDYKKSIDQLMKDREDLQQQI 563
KE+ +K I+ L +E+L++++
Sbjct: 845 LKEQIKSIEKEIENLNGKKEELEEEL 870
Score = 39.3 bits (92), Expect = 0.014
Identities = 44/237 (18%), Positives = 100/237 (42%), Gaps = 23/237 (9%)
Query: 336 LMKDREDLQQQI-NLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTS----- 389
L+K++E L++Q + ++ A L +ELEK S++E+ + L +L+ +
Sbjct: 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE 287
Query: 390 EAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTL 449
E +K + +L E+A L R+I E +R +ED + + + + E ++
Sbjct: 288 EQLRVKEKIGELEAEIASLE---RSIAE------KERELEDAEERLAKLEAEIDKL---- 334
Query: 450 YKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKE 509
+ EL+ E++E + +L EE +L L+ A + + + + + ++
Sbjct: 335 -LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
Query: 510 KTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMK---DREDLQQQI 563
+ E+ +L + + L + ++ + ++ED +I
Sbjct: 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450
Score = 38.5 bits (90), Expect = 0.024
Identities = 45/279 (16%), Positives = 122/279 (43%), Gaps = 37/279 (13%)
Query: 792 KSKHEREKFNQVVVKCQKELQELQSQVVEENTSK-LKLQMELDSKDSEIEQLQGKLAALG 850
K E + + + + ++ L+EL ++ + + L+++ ++ ++EI L+ +A
Sbjct: 255 KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKE 314
Query: 851 SETASLSSADVENDESY-VQDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSEN 909
E + + + +E ++ +R ++Y
Sbjct: 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA-------------- 360
Query: 910 DKQNTDPELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLL 969
ELK+ + R++L + + ++ DY++ +++L ++ +L+++++ L
Sbjct: 361 ---------ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
Query: 970 KEELRKSSNSSEEMEKLHKQLKQEQL-LKAQAVNKLAEIMNRKDINTTCKGKSKASSADV 1028
+EEL++ S ++ ++ + L+ + +K EI + K + +AD+
Sbjct: 412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI-------KKQEWKLEQLAADL 464
Query: 1029 RKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQV 1067
K E+E L++E + ++ +++ Q+EL E ++Q
Sbjct: 465 SKYEQELYDLKEEYDRVEKELSKL----QRELAEAEAQA 499
Score = 38.5 bits (90), Expect = 0.026
Identities = 31/187 (16%), Positives = 78/187 (41%), Gaps = 10/187 (5%)
Query: 954 QLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDI 1013
++ + +L+ +I L+ R + E+E ++L + L+A+ LAEI +
Sbjct: 291 RVKEKIGELEAEIASLE---RSIAEKERELEDAEERLAK---LEAEIDKLLAEIEELERE 344
Query: 1014 NTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFN---QVVVKCQKELQELQSQVVEE 1070
+ + + + + ++E L+ EL + ++F + +++L++L+ ++ E
Sbjct: 345 IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404
Query: 1071 NTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVENDESYVQDEVRSRSVTQGD 1130
+LQ EL E+ L +A + ++ L + + E D
Sbjct: 405 KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE-WKLEQLAAD 463
Query: 1131 VIRADAK 1137
+ + + +
Sbjct: 464 LSKYEQE 470
Score = 38.1 bits (89), Expect = 0.035
Identities = 54/306 (17%), Positives = 137/306 (44%), Gaps = 30/306 (9%)
Query: 796 EREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETAS 855
E EK + + + +++L L+ ++ + +L+ ++ + ++ +L+ L L + +
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790
Query: 856 LSSADVENDESYVQD--SRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDKQN 913
+++ + S +++ SR+E + ++ + +K+Y+ +++ + +Q
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT-LEKEYLEKEIQELQEQRIDLKEQI 849
Query: 914 TDPELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEEL 973
E E+++L K E L + D + + L K+R++L+ Q+ L+ ++
Sbjct: 850 KSIEKEIENLNGK----KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905
Query: 974 RKSSNSSEEMEKLHKQLKQEQLLKAQAVN-KLAEIMNRKDINTTCKGKSKASSADVRKKE 1032
+ E+ K +LK K +A+ +L+EI + + + +
Sbjct: 906 EELEAQIEKKRKRLSELKA----KLEALEEELSEI----EDPKGEDEEIPEEELSLEDVQ 957
Query: 1033 KECRKLQQELT----------QEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELD 1082
E +++++E+ QE E+ V+K EL+E ++++ EE + L+ E +
Sbjct: 958 AELQRVEEEIRALEPVNMLAIQEYEE----VLKRLDELKEKRAKLEEERKAILERIEEYE 1013
Query: 1083 SKDSEI 1088
K E+
Sbjct: 1014 KKKREV 1019
Score = 36.2 bits (84), Expect = 0.14
Identities = 29/205 (14%), Positives = 81/205 (39%), Gaps = 14/205 (6%)
Query: 906 NSENDKQNTDPELE-LKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQ 964
E D + + E+E +K + + + + E L +E D + + ++Q
Sbjct: 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQA 798
Query: 965 QINLLKEELRKSSNSSEEME----KLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGK 1020
+++ L+EE+ + E+E +L + + + + + ++ +
Sbjct: 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
Query: 1021 SKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQME 1080
++ ++ +E ++L + + + +L+EL+ ++ E +
Sbjct: 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA-------Q 911
Query: 1081 LDSKDSEIEQLQGKLAALGSETASL 1105
++ K + +L+ KL AL E + +
Sbjct: 912 IEKKRKRLSELKAKLEALEEELSEI 936
Score = 33.1 bits (76), Expect = 1.3
Identities = 42/211 (19%), Positives = 95/211 (45%), Gaps = 19/211 (9%)
Query: 21 ANGELKDLLERE---RREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHD 77
+L L + +E+ +L+E++ L EQ +++ L + +LE+ L L
Sbjct: 817 IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA 876
Query: 78 LKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMV 137
L++ + R + + + + E L+ + E+L+ + E + RK+ +EL A E+ +
Sbjct: 877 LRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE---KKRKRLSELKAKLEALEEEL 933
Query: 138 VELQNILATL------EMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNT 191
E+++ E+ + +Q E+ ++ +I A+ ++E+ RL L
Sbjct: 934 SEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKE 993
Query: 192 ELERNKHRELQLAEDNRHLGEKVSSLEKECR 222
+ + L E+ + + E++ EK+ R
Sbjct: 994 KRAK-------LEEERKAILERIEEYEKKKR 1017
Score = 32.0 bits (73), Expect = 2.4
Identities = 32/166 (19%), Positives = 72/166 (43%), Gaps = 10/166 (6%)
Query: 943 EREVDYKKSIDQLMKDREDLQQQINLL-KEELRKS-SNSSEEMEKLHKQLKQEQLLKAQA 1000
RE + + L+K++ + + L KE L + ++ L ++L++ ++
Sbjct: 204 RREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISEL 263
Query: 1001 VNKLAEIMNR-KDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKE 1059
+L EI +++N K + V++K EL E + + + ++E
Sbjct: 264 EKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK-------IGELEAEIASLERSIAEKERE 316
Query: 1060 LQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASL 1105
L++ + ++ + KL E++ + EIE+ + + L E A L
Sbjct: 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAEL 362
Score = 32.0 bits (73), Expect = 2.5
Identities = 23/119 (19%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 980 SEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQ 1039
E+++L ++L+ + + ++L I NR D + +D +K E K
Sbjct: 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLD-------ELSQELSDASRKIGEIEKEI 725
Query: 1040 QELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAAL 1098
++L QE EK + + + +++L L+ ++ + +L+ ++ + ++ +L+ L L
Sbjct: 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL 784
Score = 30.8 bits (70), Expect = 5.5
Identities = 25/138 (18%), Positives = 55/138 (39%), Gaps = 10/138 (7%)
Query: 21 ANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKE 80
E +D L+ R ++ +L+ +L + + + L +E+ L + + + E
Sbjct: 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438
Query: 81 SQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVEL 140
+ ++++ KK E L+ ++ K + E L E E+ + +L
Sbjct: 439 LEEEKEDKALEIKKQEWKLEQLAADLSKYEQE------LYDLKEEY----DRVEKELSKL 488
Query: 141 QNILATLEMERDTLQQEV 158
Q LA E + ++ V
Sbjct: 489 QRELAEAEAQARASEERV 506
Score = 30.8 bits (70), Expect = 5.6
Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 4 LHLHGFQVDNAIPNGGQANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDE 63
L L ++ I + +LK+ ++ +E+ L ++ +L E+ E + A L
Sbjct: 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
Query: 64 MGQLEKNLTILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQS 123
+G L+K L L+E +R+ + +K L L ++
Sbjct: 884 LGDLKKERDELEAQLRELERKIEELEAQIEKKRKR----------LSELKAKLEALEEEL 933
Query: 124 AELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATL 161
+E+ K E++ E L ++ E +++E+ L
Sbjct: 934 SEIEDPKGEDEEIPEEEL-SLEDVQAELQRVEEEIRAL 970
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic
subunit; Provisional.
Length = 340
Score = 64.6 bits (157), Expect = 1e-10
Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 19/201 (9%)
Query: 569 GKGAYG-IVYKAYDKNNKQYVAIKKIFEAFR----NKTDAQRTYREILFLKSFQRHPNII 623
G G++G ++ Y + VAIK+ FE + + D + R+IL ++ HP +
Sbjct: 39 GTGSFGRVILATYKNEDFPPVAIKR-FEKSKIIKQKQVDHVFSERKIL---NYINHPFCV 94
Query: 624 TMLDIYKAVNNKDLYVVFEY-MENDLNKVIR--DKILKDVHIRYIMFQLCNGLSYIHACK 680
+ +K + LY+V E+ + + +R + DV Y Q+ Y+ +
Sbjct: 95 NLYGSFK--DESYLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAA-QIVLIFEYLQSLN 151
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTH 740
+++RDLKP N+L+DK IK+ D G A+ + L T Y APEIL+ N +
Sbjct: 152 IVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLC---GTPEYIAPEILL-NVGHGK 207
Query: 741 HVDIWSLGCILAEMLQSKPLF 761
D W+LG + E+L P F
Sbjct: 208 AADWWTLGIFIYEILVGCPPF 228
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 65.9 bits (160), Expect = 1e-10
Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 41/239 (17%)
Query: 567 KEGKGAYGIVYKAYDKNNKQYVAIKKI-FEAFRNKTDAQRTYREILFLKSFQRHPNIITM 625
K G G +G V+ K +++ K I + + + +Q E+ ++ +H NI+
Sbjct: 20 KIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVI-EVNVMREL-KHKNIVRY 77
Query: 626 LDIYKAVNNKDLYVVFEYME-NDLNKVIRD--KILKDVH---IRYIMFQLCNGLSYIHAC 679
+D + N+ LY++ E+ + DL++ I+ K+ + I I QL + L+Y H
Sbjct: 78 IDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNL 137
Query: 680 K-------VMHRDLKPSNILIDKSCS-----------------IKIGDLGLARSL---SD 712
K V+HRDLKP NI + KIGD GL++++ S
Sbjct: 138 KDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESM 197
Query: 713 SKECLTEYIATRWYRAPEILI-SNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQL 770
+ C + T +Y +PE+L+ + Y D+W+LGCI+ E+ K F A+ QL
Sbjct: 198 AHSC----VGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQL 252
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 63.1 bits (153), Expect = 1e-10
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 19/230 (8%)
Query: 558 DLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQ 617
+LQ+ G+G +G V + + Q VA+K I + AQ E +
Sbjct: 4 NLQKLTLGEIIGEGEFGAVLQG--EYTGQKVAVKNI----KCDVTAQAFLEETAVMTKLH 57
Query: 618 RHPNIITMLDIYKAVNNKDLYVVFEYM-ENDLNKVIRDKILKDVH-IRYIMFQL--CNGL 673
H N++ +L + + + LY+V E M + +L +R + V I+ + F L G+
Sbjct: 58 -HKNLVRLLGV---ILHNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGM 113
Query: 674 SYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILI 733
Y+ + K++HRDL NIL+ + K+ D GLAR S + +W APE L
Sbjct: 114 EYLESKKLVHRDLAARNILVSEDGVAKVSDFGLAR--VGSMGVDNSKLPVKW-TAPEAL- 169
Query: 734 SNRRYTHHVDIWSLGCILAEMLQ-SKPLFPGASTSHQLQLIVNLVRPNPP 782
+++++ D+WS G +L E+ + +P S + + R PP
Sbjct: 170 KHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKGYRMEPP 219
>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
LATS subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. LATS was originally identified in Drosophila
using a screen for genes whose inactivation led to
overproliferation of cells. In tetrapods, there are two
LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in
mice results in the development of various tumors,
including sarcomas and ovarian cancer. LATS functions as
a tumor suppressor and is implicated in cell cycle
regulation.
Length = 376
Score = 64.4 bits (157), Expect = 1e-10
Identities = 66/256 (25%), Positives = 107/256 (41%), Gaps = 56/256 (21%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEA---FRNKTDAQRTYREILFLKSFQRHPNIITM 625
G GA+G V + A+K + +A RN+ + R+IL + + ++ +
Sbjct: 10 GIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDIL---AEADNEWVVKL 66
Query: 626 LDIYKAVNNKD-LYVVFEYMEN-DL-NKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVM 682
Y + +KD LY V +Y+ D+ + +IR I ++ R+ + +L + +H +
Sbjct: 67 ---YYSFQDKDNLYFVMDYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFI 123
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLARSL----------------SDSKECLTEY------ 720
HRD+KP NILID+ IK+ D GL DS E E+
Sbjct: 124 HRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRC 183
Query: 721 ---------------------IATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKP 759
+ T Y APE+L+ YT D WS+G IL EML +P
Sbjct: 184 RLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYEMLVGQP 242
Query: 760 LFPGASTSHQLQLIVN 775
F + + ++N
Sbjct: 243 PFLADTPAETQLKVIN 258
>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 2. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK2,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK2 and MSK1 play nonredundant
roles in activating histone H3 kinases, which play
pivotal roles in compaction of the chromatin fiber. MSK2
is the required H3 kinase in response to stress stimuli
and activation of the p38 MAPK pathway. MSK2 also plays
a role in the pathogenesis of psoriasis.
Length = 332
Score = 63.8 bits (155), Expect = 1e-10
Identities = 55/224 (24%), Positives = 107/224 (47%), Gaps = 13/224 (5%)
Query: 569 GKGAYGIVY---KAYDKNNKQYVAIKKIFEAF---RNKTDAQRTYREILFLKSFQRHPNI 622
G GAYG V+ K + + A+K + +A + KT + T E L+ ++ P +
Sbjct: 9 GTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKT-VEHTRTERNVLEHVRQSPFL 67
Query: 623 ITMLDIYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACK 680
+T+ Y L+++ +Y+ + + + +R+ ++ L ++H
Sbjct: 68 VTLH--YAFQTEAKLHLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLG 125
Query: 681 VMHRDLKPSNILIDKSCSIKIGDLGLARS-LSDSKECLTEYIATRWYRAPEILISNRRYT 739
+++RD+K NIL+D + + D GL++ LS+ KE + T Y APEI+ +
Sbjct: 126 IVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHG 185
Query: 740 HHVDIWSLGCILAEMLQ-SKPLFPGASTSHQLQLIVNLVRPNPP 782
VD WSLG ++ E+L + P + Q ++ +++ +PP
Sbjct: 186 KAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPP 229
>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 2.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
LATS2 is an essential mitotic regulator responsible for
coordinating accurate cytokinesis completion and
governing the stabilization of other mitotic regulators.
It is also critical in the maintenance of proper
chromosome number, genomic stability, mitotic fidelity,
and the integrity of centrosome duplication.
Downregulation of LATS2 is associated with poor
prognosis in acute lymphoblastic leukemia and breast
cancer.
Length = 381
Score = 64.3 bits (156), Expect = 2e-10
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 52/200 (26%)
Query: 625 MLDIYKAVNNKD-LYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKV 681
++ +Y + +KD LY V +Y+ ++ +IR ++ +V R+ + +L + +H
Sbjct: 63 VVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGF 122
Query: 682 MHRDLKPSNILIDKSCSIKIGDLGLA---------------------------------- 707
+HRD+KP NILID IK+ D GL
Sbjct: 123 IHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSN 182
Query: 708 ------------RSLSDSKECLTE-YIATRWYRAPEILISNRRYTHHVDIWSLGCILAEM 754
R+ + CL + T Y APE+L+ + YT D WS+G IL EM
Sbjct: 183 CRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLL-RKGYTQLCDWWSVGVILFEM 241
Query: 755 LQSKPLFPGAS-TSHQLQLI 773
L +P F + T QL++I
Sbjct: 242 LVGQPPFLAPTPTETQLKVI 261
>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine
Kinase, Epidermal Growth Factor Receptor. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EGFR
(HER1, ErbB1) is a member of the EGFR (HER, ErbB)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular EGF-related
ligand-binding region, a transmembrane helix, and a
cytoplasmic region with a tyr kinase domain and a
regulatory C-terminal tail. Unlike other tyr kinases,
phosphorylation of the activation loop of EGFR proteins
is not critical to their activation. Instead, they are
activated by ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands for EGFR include EGF, heparin binding
EGF-like growth factor (HBEGF), epiregulin,
amphiregulin, TGFalpha, and betacellulin. Upon ligand
binding, EGFR can form homo- or heterodimers with other
EGFR subfamily members. The EGFR signaling pathway is
one of the most important pathways regulating cell
proliferation, differentiation, survival, and growth.
Overexpression and mutation in the kinase domain of EGFR
have been implicated in the development and progression
of a variety of cancers. A number of monoclonal
antibodies and small molecule inhibitors have been
developed that target EGFR, including the antibodies
Cetuximab and Panitumumab, which are used in combination
with other therapies for the treatment of colorectal
cancer and non-small cell lung carcinoma (NSCLC). The
small molecule inhibitors Gefitinib (Iressa) and
Erlotinib (Tarceva), already used for NSCLC, are
undergoing clinical trials for other types of cancer
including gastrointestinal, breast, head and neck, and
bladder.
Length = 316
Score = 63.5 bits (154), Expect = 2e-10
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 29/231 (12%)
Query: 569 GKGAYGIVYKAY----DKNNKQYVAIKKIFEAFRNKTDAQRTYREIL---FLKSFQRHPN 621
G GA+G VYK + K VAIK++ EA K + +EIL ++ + +P+
Sbjct: 16 GSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN-----KEILDEAYVMASVDNPH 70
Query: 622 IITMLDIYKAVNNKDLYVVFEYMEN----DLNKVIRDKILKDVHIRYIMFQLCNGLSYIH 677
+ +L I + ++ + M D + +D I ++ Q+ G++Y+
Sbjct: 71 VCRLLGI---CLTSTVQLITQLMPFGCLLDYVREHKDNIGSQ-YLLNWCVQIAKGMNYLE 126
Query: 678 ACKVMHRDLKPSNILIDKSCSIKIGDLGLARSL-SDSKECLTE--YIATRWYRAPEILIS 734
+++HRDL N+L+ +KI D GLA+ L +D KE E + +W IL
Sbjct: 127 ERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESIL-- 184
Query: 735 NRRYTHHVDIWSLGCILAEMLQ--SKPLFPGASTSHQLQLIVNLVR-PNPP 782
+R YTH D+WS G + E++ SKP + G S ++ R P PP
Sbjct: 185 HRIYTHQSDVWSYGVTVWELMTFGSKP-YDGIPASEISSILEKGERLPQPP 234
>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine
Kinase, HER2. Protein Tyrosine Kinase (PTK) family;
HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER2 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER2 does not bind to any known EGFR
subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner with other ligand-bound EGFR proteins
and functions as a signal amplifier, with the HER2-HER3
heterodimer being the most potent pair in mitogenic
signaling. HER2 plays an important role in cell
development, proliferation, survival and motility.
Overexpression of HER2 results in its activation and
downstream signaling, even in the absence of ligand.
HER2 overexpression, mainly due to gene amplification,
has been shown in a variety of human cancers. Its role
in breast cancer is especially well-documented. HER2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. HER2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the survival
rates of patients with HER2-overexpressing breast
cancer.
Length = 279
Score = 63.1 bits (153), Expect = 2e-10
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 23/200 (11%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREIL---FLKSFQRHPNIITM 625
G GA+G VYK + + V I + R T + + +EIL ++ + P + +
Sbjct: 16 GSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT-SPKANKEILDEAYVMAGVGSPYVCRL 74
Query: 626 LDIYKAVNNKDLYVVFEYMEN----DLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKV 681
L I + +V + M D + +D+I + + + Q+ G+SY+ ++
Sbjct: 75 LGI---CLTSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCV-QIAKGMSYLEEVRL 130
Query: 682 MHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY------IATRWYRAPEILISN 735
+HRDL N+L+ +KI D GLAR L D E TEY + +W IL +
Sbjct: 131 VHRDLAARNVLVKSPNHVKITDFGLAR-LLDIDE--TEYHADGGKVPIKWMALESIL--H 185
Query: 736 RRYTHHVDIWSLGCILAEML 755
RR+TH D+WS G + E++
Sbjct: 186 RRFTHQSDVWSYGVTVWELM 205
>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase,
Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps)
kinase subfamily; catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes kinase is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells. It plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. A recent study implicates Fes
kinase as a tumor suppressor in colorectal cancer.
Length = 252
Score = 62.3 bits (151), Expect = 2e-10
Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 15/222 (6%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
G+G +G V+ + + VA+K E A + +E LK + HPNI+ ++ +
Sbjct: 4 GRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKA-KFLQEARILKQYS-HPNIVRLIGV 61
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVIRDK--ILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
+ +Y+V E ++ D +R + LK + ++ G+ Y+ + +HRD
Sbjct: 62 --CTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRD 119
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLT---EYIATRWYRAPEILISNRRYTHHV 742
L N L+ + +KI D G++R D T + I +W APE L + RY+
Sbjct: 120 LAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKW-TAPEAL-NYGRYSSES 177
Query: 743 DIWSLGCILAEM--LQSKPLFPGASTSHQLQLIVNLVRPNPP 782
D+WS G +L E L + P + S + I VR P
Sbjct: 178 DVWSFGILLWEAFSLGAVP-YANLSNQQTREAIEQGVRLPCP 218
>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine
Kinase, HER4. Protein Tyrosine Kinase (PTK) family;
HER4 (ErbB4); catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER4 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands that bind HER4 fall into two groups,
the neuregulins (or heregulins) and some EGFR (HER1)
ligands including betacellulin, HBEGF, and epiregulin.
All four neuregulins (NRG1-4) interact with HER4. Upon
ligand binding, HER4 forms homo- or heterodimers with
other HER proteins. HER4 is essential in embryonic
development. It is implicated in mammary gland, cardiac,
and neural development. As a postsynaptic receptor of
NRG1, HER4 plays an important role in synaptic
plasticity and maturation. The impairment of NRG1/HER4
signaling may contribute to schizophrenia.
Length = 303
Score = 63.2 bits (153), Expect = 2e-10
Identities = 74/289 (25%), Positives = 127/289 (43%), Gaps = 33/289 (11%)
Query: 569 GKGAYGIVYKAY----DKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIIT 624
G GA+G VYK + K VAIK + E K + + E L + S HP+++
Sbjct: 16 GSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVE-FMDEALIMASMD-HPHLVR 73
Query: 625 MLDIYKAVNNKDLY------VVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHA 678
+L + + + + + +Y+ +D I + + + + Q+ G+ Y+
Sbjct: 74 LLGVCLSPTIQLVTQLMPHGCLLDYVHEH-----KDNIGSQLLLNWCV-QIAKGMMYLEE 127
Query: 679 CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLS-DSKECLTE--YIATRWYRAPEILISN 735
+++HRDL N+L+ +KI D GLAR L D KE + + +W I
Sbjct: 128 RRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALE--CIHY 185
Query: 736 RRYTHHVDIWSLGCILAEMLQ--SKPLFPGASTSHQLQLIVNLVR-PNPP--HADKFYAG 790
R++TH D+WS G + E++ KP + G T L+ R P PP D +
Sbjct: 186 RKFTHQSDVWSYGVTIWELMTFGGKP-YDGIPTREIPDLLEKGERLPQPPICTIDVYMVM 244
Query: 791 FK----SKHEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSK 835
K R KF ++ + + ++ Q +V + ++KL DSK
Sbjct: 245 VKCWMIDADSRPKFKELAAEFSRMARDPQRYLVIQGDDRMKLPSPNDSK 293
>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 1.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
Inactivation of LATS1 in mice results in the development
of various tumors, including sarcomas and ovarian
cancer. Promoter methylation, loss of heterozygosity,
and missense mutations targeting the LATS1 gene have
also been found in human sarcomas and ovarian cancers.
In addition, decreased expression of LATS1 is associated
with an aggressive phenotype and poor prognosis. LATS1
induces G2 arrest and promotes cytokinesis. It may be a
component of the mitotic exit network in higher
eukaryotes.
Length = 382
Score = 63.5 bits (154), Expect = 2e-10
Identities = 67/246 (27%), Positives = 101/246 (41%), Gaps = 60/246 (24%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEA---FRNKTDAQRTYREILFLKSFQRHPNIITM 625
G GA+G V A + K A+K + + RN+ + R+IL + +
Sbjct: 10 GIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNE------WV 63
Query: 626 LDIYKAVNNKD-LYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVM 682
+ +Y + +KD LY V +Y+ ++ +IR I + R+ + +L + +H +
Sbjct: 64 VRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFI 123
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLA---RSLSDSK------------------------- 714
HRD+KP NILID+ IK+ D GL R DSK
Sbjct: 124 HRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANC 183
Query: 715 ------------------ECLTE-YIATRWYRAPEILISNRRYTHHVDIWSLGCILAEML 755
CL + T Y APE+L+ YT D WS+G IL EML
Sbjct: 184 RCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRT-GYTQLCDWWSVGVILYEML 242
Query: 756 QSKPLF 761
+P F
Sbjct: 243 VGQPPF 248
>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 1. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
1 (DDR1) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR1 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR1 binds to all collagens tested to date (types I-IV).
It is widely expressed in many tissues. It is abundant
in the brain and is also found in keratinocytes, colonic
mucosa epithelium, lung epithelium, thyroid follicles,
and the islets of Langerhans. During embryonic
development, it is found in the developing
neuroectoderm. DDR1 is a key regulator of cell
morphogenesis, differentiation and proliferation. It is
important in the development of the mammary gland, the
vasculator and the kidney. DDR1 is also found in human
leukocytes, where it facilitates cell adhesion,
migration, maturation, and cytokine production.
Length = 304
Score = 63.0 bits (153), Expect = 2e-10
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 600 KTDAQRTYREILFLKSFQ-----RHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIR 653
+ DA + R FLK + + PNII +L + V+ L ++ EYMEN DLN+ +
Sbjct: 55 RPDANKNARND-FLKEVKILSRLKDPNIIRLLGV--CVDEDPLCMITEYMENGDLNQFLS 111
Query: 654 DKILKD---------------VHIRYIMF-----QLCNGLSYIHACKVMHRDLKPSNILI 693
L D I Y Q+ +G+ Y+ + +HRDL N L+
Sbjct: 112 SHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLV 171
Query: 694 DKSCSIKIGDLGLARSLSDSKECLTE---YIATRWYRAPEILISNRRYTHHVDIWSLGCI 750
++ +IKI D G++R+L + + RW IL+ ++T D+W+ G
Sbjct: 172 GENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMG--KFTTASDVWAFGVT 229
Query: 751 LAEML 755
L E+L
Sbjct: 230 LWEIL 234
>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase alpha.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) alpha isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKalpha is expressed
ubiquitously in many tissues. It plays a role in the
regulation of peripheral actin reorganization and
neurite outgrowth. It may also play a role in the
transferrin iron uptake pathway.
Length = 332
Score = 63.2 bits (153), Expect = 3e-10
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 18/219 (8%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI--FEAF-RNKTDAQRTYREILFLKSFQRHPNIITM 625
G+GA+G V KN + A+K + +E R +T R R++L IT
Sbjct: 10 GRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLV----NGDNQWITT 65
Query: 626 LDIYKAVNNKDLYVVFEY-MENDLNKVI---RDKILKDVHIRYIMFQLCNGLSYIHACKV 681
L Y + +LY+V +Y + DL ++ D++ +D+ R+ + ++ + +H
Sbjct: 66 LH-YAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDM-ARFYLAEMVIAIDSVHQLHY 123
Query: 682 MHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY-IATRWYRAPEILISNR---- 736
+HRD+KP NIL+D + I++ D G L + + + T Y +PEIL +
Sbjct: 124 VHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKG 183
Query: 737 RYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVN 775
+Y D WSLG + EML + F S I+N
Sbjct: 184 KYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMN 222
>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine
Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family;
Tyro3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyro3 (or Sky) is a
member of the Axl subfamily, which is composed of
receptor tyr kinases (RTKs) containing an extracellular
ligand-binding region with two immunoglobulin-like
domains followed by two fibronectin type III repeats, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, Gas6 and protein S,
leads to receptor dimerization, autophosphorylation,
activation, and intracellular signaling. Tyro3 is
predominantly expressed in the central nervous system
and the brain, and functions as a neurotrophic factor.
It is also expressed in osteoclasts and has a role in
bone resorption.
Length = 273
Score = 61.9 bits (150), Expect = 4e-10
Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 24/219 (10%)
Query: 569 GKGAYGIVYKAY---DKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITM 625
GKG +G V +A + + Q VA+K + + +D + RE +K F HPN+I +
Sbjct: 8 GKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFD-HPNVIKL 66
Query: 626 LDIYKAVNNKDL----YVVFEYMEN-DLNKVIRDKILKD--------VHIRYIMFQLCNG 672
+ + K V+ +M++ DL+ + + + +R+ M + +G
Sbjct: 67 IGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRF-MIDIASG 125
Query: 673 LSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDS---KECLTEYIATRWYRAP 729
+ Y+ + +HRDL N +++++ ++ + D GL++ + ++ + +W A
Sbjct: 126 MEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWL-AL 184
Query: 730 EILISNRRYTHHVDIWSLGCILAE-MLQSKPLFPGASTS 767
E L N YT H D+W+ G + E M + + + G S
Sbjct: 185 ESLADN-VYTTHSDVWAFGVTMWEIMTRGQTPYAGVENS 222
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 63.0 bits (153), Expect = 5e-10
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 619 HPNIITMLDIYKAVNNKDLYVVFEYMENDLNKVI--RDKILKDVHIRYIMFQLCNGLSYI 676
HP ++ +LD+ + V V+ +Y +DL + R + L + + QL + + YI
Sbjct: 219 HPAVLALLDV-RVVGGLTCLVLPKY-RSDLYTYLGARLRPLGLAQVTAVARQLLSAIDYI 276
Query: 677 HACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY-IA-TRWYRAPEILIS 734
H ++HRD+K N+L++ I +GD G A S Y IA T APE+L
Sbjct: 277 HGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAG 336
Query: 735 NRRYTHHVDIWSLGCILAEM-LQSKPLFPGASTSHQLQL---IVNLVRPNPPHADKF 787
+ YT VDIWS G ++ E + + LF + + I+ ++R H D+F
Sbjct: 337 D-PYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEF 392
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 61.3 bits (149), Expect = 6e-10
Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 32/215 (14%)
Query: 569 GKGAYGIVYK--AYDKNNKQ---YVAIKKIFEAFRNKTDAQRTYREILF-----LKSFQR 618
G GA+G V + AY + VA+K + K A + RE L +
Sbjct: 44 GAGAFGKVVEATAYGLSKSDAVMKVAVKML------KPTAHSSEREALMSELKIMSHLGN 97
Query: 619 HPNIITMLDIYKAVNNKDLYVVFEY-----MENDLNKVIRDKILKDVHIRYIMFQLCNGL 673
H NI+ +L + V+ EY + N L + R+ L + +Q+ G+
Sbjct: 98 HENIVNLLG--ACTIGGPILVITEYCCYGDLLNFLRRK-RESFLTLEDLLSFSYQVAKGM 154
Query: 674 SYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARS-LSDSKECL--TEYIATRWYRAPE 730
+++ + +HRDL N+L+ +KI D GLAR ++DS + + +W APE
Sbjct: 155 AFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWM-APE 213
Query: 731 ILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPG 763
+ + YT D+WS G +L E+ L S P +PG
Sbjct: 214 SIFNC-VYTFESDVWSYGILLWEIFSLGSNP-YPG 246
>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase,
Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Fer kinase is a member
of the Fes subfamily of proteins which are cytoplasmic
(or nonreceptor) tyr kinases containing an N-terminal
region with FCH (Fes/Fer/CIP4 homology) and coiled-coil
domains, followed by a SH2 domain, and a C-terminal
catalytic domain. Fer kinase is expressed in a wide
variety of tissues, and is found to reside in both the
cytoplasm and the nucleus. It plays important roles in
neuronal polarization and neurite development,
cytoskeletal reorganization, cell migration, growth
factor signaling, and the regulation of cell-cell
interactions mediated by adherens junctions and focal
adhesions. Fer kinase also regulates cell cycle
progression in malignant cells.
Length = 250
Score = 60.8 bits (147), Expect = 7e-10
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 14/191 (7%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDI 628
GKG +G V+K K+ K VA+K E + + E LK + HPNI+ ++ +
Sbjct: 4 GKGNFGEVFKGTLKD-KTPVAVKTCKEDLPQELKI-KFLSEARILKQYD-HPNIVKLIGV 60
Query: 629 YKAVNNKDLYVVFEYMEN-DLNKVIRDKI--LKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
+ +Y+V E + D +R K LK + G++Y+ + +HRD
Sbjct: 61 --CTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRD 118
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSD---SKECLTEYIATRWYRAPEILISNRRYTHHV 742
L N L+ ++ +KI D G++R D S L + I +W APE L + RY+
Sbjct: 119 LAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQ-IPIKW-TAPEAL-NYGRYSSES 175
Query: 743 DIWSLGCILAE 753
D+WS G +L E
Sbjct: 176 DVWSYGILLWE 186
>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy
protein kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Myotonic Dystrophy
protein kinase (DMPK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The DMPK-like subfamily is composed of DMPK
and DMPK-related cell division control protein 42
(Cdc42) binding kinase (MRCK). Three isoforms of MRCK
are known, named alpha, beta and gamma. The DMPK gene is
implicated in myotonic dystrophy 1 (DM1), an inherited
multisystemic disorder with symptoms that include muscle
hyperexcitability, progressive muscle weakness and
wasting, cataract development, testicular atrophy, and
cardiac conduction defects. The genetic basis for DM1 is
the mutational expansion of a CTG repeat in the 3'-UTR
of DMPK. DMPK is expressed in skeletal and cardiac
muscles, and in central nervous tissues. The functional
role of DMPK is not fully understood. It may play a role
in the signal transduction and homeostasis of calcium.
MRCK is activated via interaction with the small GTPase
Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent
cell motility. MRCKgamma is expressed in heart and
skeletal muscles, unlike MRCKalpha and MRCKbeta, which
are expressed ubiquitously.
Length = 331
Score = 61.7 bits (150), Expect = 7e-10
Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI--FEAF-RNKTDAQRTYREILFLKSFQRHPNIITM 625
G+GA+G V KN Q A+K + +E R +T R R++L + IT
Sbjct: 10 GRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRR----WITN 65
Query: 626 LDIYKAVNNKDLYVVFEY-MENDLNKVIR---DKILKDVHIRYIMFQLCNGLSYIHACKV 681
L Y + +LY+V +Y + DL ++ D++ +D+ R+ + ++ + +H
Sbjct: 66 LH-YAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDM-ARFYLAEMVLAIDSVHQLGY 123
Query: 682 MHRDLKPSNILIDKSCSIKIGDLG-LARSLSDSKECLTEYIATRWYRAPEILISNR---- 736
+HRD+KP N+L+DK+ I++ D G R L+D + T Y +PEIL +
Sbjct: 124 VHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKG 183
Query: 737 RYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVN 775
RY D WSLG + EML + F S I+N
Sbjct: 184 RYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMN 222
>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 2.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 2 (Ror2); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror2 plays important roles in skeletal
and heart formation. Ror2-deficient mice show widespread
bone abnormalities, ventricular defects in the heart,
and respiratory dysfunction. Mutations in human Ror2
result in two different bone development genetic
disorders, recessive Robinow syndrome and brachydactyly
type B. Ror2 is also implicated in neural development.
Length = 283
Score = 61.2 bits (148), Expect = 7e-10
Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 29/225 (12%)
Query: 569 GKGAYGIVYKAY-----DKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNII 623
G+ +G VYK + Q VAIK + + + + + ++ ++S +HPNI+
Sbjct: 14 GEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKD--KAEGPLREEFKHEAMMRSRLQHPNIV 71
Query: 624 TMLD----------IYKAVNNKDL--YVVFEYMENDLNKVIRDKILKDV----HIRYIMF 667
+L I+ ++ DL ++V +D+ DK +K +I+
Sbjct: 72 CLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVT 131
Query: 668 QLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDS---KECLTEYIATR 724
Q+ G+ ++ + V+H+DL N+L+ ++KI DLGL R + + K + R
Sbjct: 132 QIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIR 191
Query: 725 WYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQ 769
W +PE ++ +++ DIWS G +L E+ S L P S+Q
Sbjct: 192 WM-SPEAIMYG-KFSIDSDIWSYGVVLWEVF-SYGLQPYCGYSNQ 233
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 62.2 bits (151), Expect = 1e-09
Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 12/160 (7%)
Query: 570 KGAYGIVYKAYDKNNKQYVAIKKIFEA---FRNKTDAQRTYREILFLKSFQRHPNIITML 626
+GA+G VY KNN + A+K + +A +N + R+ L L + P I+ +
Sbjct: 14 RGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALAL---SKSPFIVHLY 70
Query: 627 DIYKAVNNKDLYVVFEYM-ENDLNKV--IRDKILKDVHIRYIMFQLCNGLSYIHACKVMH 683
++ NN +Y+V EY+ D+ + I +++ ++YI ++ L Y+H ++H
Sbjct: 71 YSLQSANN--VYLVMEYLIGGDVKSLLHIYGYFDEEMAVKYIS-EVALALDYLHRHGIIH 127
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIAT 723
RDLKP N+LI IK+ D GL++ + + + + + T
Sbjct: 128 RDLKPDNMLISNEGHIKLTDFGLSKVTLNRELNMMDILTT 167
>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine
Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR is a
receptor tyr kinase (RTK) that is composed of two
alphabeta heterodimers. Binding of the insulin ligand to
the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR signaling plays an important
role in many cellular processes including glucose
homeostasis, glycogen synthesis, lipid and protein
metabolism, ion and amino acid transport, cell cycle and
proliferation, cell differentiation, gene transcription,
and nitric oxide synthesis. Insulin resistance, caused
by abnormalities in InsR signaling, has been described
in diabetes, hypertension, cardiovascular disease,
metabolic syndrome, heart failure, and female
infertility.
Length = 288
Score = 60.8 bits (147), Expect = 1e-09
Identities = 63/250 (25%), Positives = 121/250 (48%), Gaps = 52/250 (20%)
Query: 560 QQQINLLKE-GKGAYGIVYKAYDKN-----NKQYVAIKKIFEAFRNKTDAQRTYREIL-- 611
+++I LL+E G+G++G+VY+ ++ + VA+K + N++ + R E L
Sbjct: 5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTV-----NESASLRERIEFLNE 59
Query: 612 --FLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRD-------------K 655
+K F H +++ +L + + VV E M + DL +R
Sbjct: 60 ASVMKGFTCH-HVVRLLGVVS--KGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPP 116
Query: 656 ILKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKE 715
L++ + + ++ +G++Y++A K +HRDL N ++ ++KIGD G+ R + +
Sbjct: 117 TLQE--MIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYE--- 171
Query: 716 CLTEY--------IATRWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPGAS 765
T+Y + RW APE L + +T D+WS G +L E+ L +P + G S
Sbjct: 172 --TDYYRKGGKGLLPVRWM-APESL-KDGVFTTSSDMWSFGVVLWEITSLAEQP-YQGLS 226
Query: 766 TSHQLQLIVN 775
L+ +++
Sbjct: 227 NEQVLKFVMD 236
>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase beta.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) beta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKbeta is expressed
ubiquitously in many tissues.
Length = 331
Score = 61.2 bits (148), Expect = 1e-09
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 18/219 (8%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKI--FEAF-RNKTDAQRTYREILFLKSFQRHPNIITM 625
G+GA+G V K+ ++ A+K + +E R +T R R +L Q IT
Sbjct: 10 GRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQ----WITT 65
Query: 626 LDIYKAVNNKDLYVVFEY-MENDLNKVI---RDKILKDVHIRYIMFQLCNGLSYIHACKV 681
L Y + LY+V +Y + DL ++ D++ +D+ R+ + ++ + IH
Sbjct: 66 LH-YAFQDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMA-RFYIAEMVLAIHSIHQLHY 123
Query: 682 MHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY-IATRWYRAPEILISNR---- 736
+HRD+KP N+L+D + I++ D G ++ + + T Y +PEIL +
Sbjct: 124 VHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMG 183
Query: 737 RYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVN 775
+Y D WSLG + EML + F S I+N
Sbjct: 184 KYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMN 222
>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C eta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), eta isoform, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta
is predominantly expressed in squamous epithelia, where
it plays a crucial role in the signaling of cell-type
specific differentiation. It is also expressed in pro-B
cells and early-stage thymocytes, and acts as a key
regulator in early B-cell development. PKC-eta increases
glioblastoma multiforme (GBM) proliferation and
resistance to radiation, and is being developed as a
therapeutic target for the management of GBM.
Length = 320
Score = 60.7 bits (147), Expect = 1e-09
Identities = 52/210 (24%), Positives = 97/210 (46%), Gaps = 6/210 (2%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF-EAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
GKG++G V A K + + A+K + + D + T E L + HP + +
Sbjct: 4 GKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYC 63
Query: 628 IYKAVNNKDLYVVFEYMEN-DLN-KVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRD 685
++ + L+ V E++ DL + + + + R+ ++ + L ++H +++RD
Sbjct: 64 CFQTPDR--LFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKGIIYRD 121
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIW 745
LK N+L+D K+ D G+ + + + + + T Y APEIL Y VD W
Sbjct: 122 LKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEIL-QEMLYGPSVDWW 180
Query: 746 SLGCILAEMLQSKPLFPGASTSHQLQLIVN 775
++G +L EML F + + I+N
Sbjct: 181 AMGVLLYEMLCGHAPFEAENEDDLFEAILN 210
>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 1.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 1 (Ror1); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. Avian Ror1 was found to be
involved in late limb development. Studies in mice
reveal that Ror1 is important in the regulation of
neurite growth in central neurons, as well as in
respiratory development. Loss of Ror1 also enhances the
heart and skeletal abnormalities found in Ror2-deficient
mice.
Length = 283
Score = 59.6 bits (144), Expect = 3e-09
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 42/218 (19%)
Query: 569 GKGAYGIVYKAY----DKNNKQYVAIKKIFEAFRNKTDAQR--TYREILFLKSFQRHPNI 622
G+ A+G +YK + ++ Q VAIK + ++ + Q+ +++ L + HPNI
Sbjct: 14 GECAFGKIYKGHLYLPGMDHAQLVAIKTL----KDINNPQQWGEFQQEASLMAELHHPNI 69
Query: 623 ITMLDIYKAVNNKDLYVVFEYM-ENDLNKVIRDKILKDVH-------------------- 661
+ +L + + + ++FEY+ + DL++ + I++ H
Sbjct: 70 VCLLGV--VTQEQPVCMLFEYLNQGDLHEFL---IMRSPHSDVGCSSDEDGTVKSSLDHG 124
Query: 662 -IRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTE- 719
+I Q+ G+ Y+ + +H+DL NILI + +KI DLGL+R + + +
Sbjct: 125 DFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQP 184
Query: 720 --YIATRWYRAPEILISNRRYTHHVDIWSLGCILAEML 755
+ RW PE ++ +++ DIWS G +L E+
Sbjct: 185 KSLLPIRWM-PPEAIMYG-KFSSDSDIWSFGVVLWEIF 220
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology
to the N-terminal domain of Wnt inhibitory factor-1
(WIF) and serves as the ligand (Wnt) binding domain of
Ryk. Ryk is expressed in many different tissues both
during development and in adults, suggesting a
widespread function. It acts as a chemorepulsive axon
guidance receptor of Wnt glycoproteins and is
responsible for the establishment of axon tracts during
the development of the central nervous system. In
addition, studies in mice reveal that Ryk is essential
in skeletal, craniofacial, and cardiac development.
Thus, it appears Ryk is involved in signal transduction
despite its lack of kinase activity. Ryk may function as
an accessory protein that modulates the signals coming
from catalytically active partner RTKs such as the Eph
receptors.
Length = 280
Score = 58.6 bits (142), Expect = 4e-09
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 668 QLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSL-SDSKECL--TEYIATR 724
Q+ G+SY+H V+H+D+ N +ID+ +KI D L+R L CL E +
Sbjct: 125 QIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVK 184
Query: 725 WYRAPEILISNRRYTHHVDIWSLGCILAEM 754
W A E L+ N+ Y+ D+WS G +L E+
Sbjct: 185 WM-ALESLV-NKEYSSASDVWSFGVLLWEL 212
>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Axl subfamily; catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). The Axl subfamily
consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and
similar proteins. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with two
immunoglobulin-like domains followed by two fibronectin
type III repeats, a transmembrane segment, and an
intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl subfamily members are
implicated in a variety of cellular effects including
survival, proliferation, migration, and phagocytosis.
They are also associated with several types of cancer as
well as inflammatory, autoimmune, vascular, and kidney
diseases. Mer is named after its original reported
expression pattern (monocytes, epithelial, and
reproductive tissues). It is required for the ingestion
of apoptotic cells by phagocytes such as macrophages,
retinal pigment epithelial cells, and dendritic cells.
Mer is also important in maintaining immune homeostasis.
Length = 273
Score = 58.7 bits (142), Expect = 5e-09
Identities = 50/244 (20%), Positives = 100/244 (40%), Gaps = 28/244 (11%)
Query: 569 GKGAYGIVYKA---YDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITM 625
G+G +G V + D ++ VA+K + ++ + E +K F HPN++ +
Sbjct: 8 GEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFD-HPNVMKL 66
Query: 626 LDIYKAVNNKDL------YVVFEYMEN-DLNKVIRDKILKDVHIRY-------IMFQLCN 671
+ + L V+ +M++ DL+ + L + + M +
Sbjct: 67 IGV--CFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIAL 124
Query: 672 GLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIA---TRWYRA 728
G+ Y+ +HRDL N ++ + ++ + D GL++ + IA +W A
Sbjct: 125 GMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWI-A 183
Query: 729 PEILISNRRYTHHVDIWSLGCILAEML-QSKPLFPGASTSHQLQLIVNLVRPN-PPHA-D 785
E L ++R YT D+W+ G + E+ + + +PG + + R P D
Sbjct: 184 IESL-ADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNRLKQPEDCLD 242
Query: 786 KFYA 789
+ Y
Sbjct: 243 ELYD 246
>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine
Kinase, Tie1. Protein Tyrosine Kinase (PTK) family;
Tie1; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie1 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. No specific ligand has been
identified for Tie1, although the angiopoietin, Ang-1,
binds to Tie1 through integrins at high concentrations.
In vivo studies of Tie1 show that it is critical in
vascular development.
Length = 297
Score = 58.9 bits (142), Expect = 5e-09
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 25/207 (12%)
Query: 569 GKGAYGIVYKAYDKN--NKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
G+G +G V +A K K AIK + E F ++ D + E+ L HPNII +L
Sbjct: 11 GEGNFGQVIRAMIKKDGLKMNAAIKMLKE-FASENDHRDFAGELEVLCKLGHHPNIINLL 69
Query: 627 DIYKAVNNKDLYVVFEYME--NDLNKVIRDKILK----------------DVHIRYIMFQ 668
+ N LY+ EY N L+ + + ++L+ +
Sbjct: 70 GACE--NRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASD 127
Query: 669 LCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRA 728
+ G+ Y+ + +HRDL N+L+ ++ + KI D GL+R + + RW
Sbjct: 128 VATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAI 187
Query: 729 PEILISNRRYTHHVDIWSLGCILAEML 755
+ S YT D+WS G +L E++
Sbjct: 188 ESLNYS--VYTTKSDVWSFGVLLWEIV 212
>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine
Kinases, Anaplastic Lymphoma Kinase and Leukocyte
Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family;
Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine
(tyr) Kinase (LTK); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to tyr
residues in protein substrates. ALK and LTK are orphan
receptor tyr kinases (RTKs) whose ligands are not yet
well-defined. RTKs contain an extracellular
ligand-binding domain, a transmembrane region, and an
intracellular tyr kinase domain. They are usually
activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. ALK appears
to play an important role in mammalian neural
development as well as visceral muscle differentiation
in Drosophila. ALK is aberrantly expressed as fusion
proteins, due to chromosomal translocations, in about
60% of anaplastic large cell lymphomas (ALCLs). ALK
fusion proteins are also found in rare cases of diffuse
large B cell lymphomas (DLBCLs). LTK is mainly expressed
in B lymphocytes and neuronal tissues. It is important
in cell proliferation and survival. Transgenic mice
expressing TLK display retarded growth and high
mortality rate. In addition, a polymorphism in mouse and
human LTK is implicated in the pathogenesis of systemic
lupus erythematosus.
Length = 277
Score = 57.8 bits (140), Expect = 8e-09
Identities = 56/250 (22%), Positives = 102/250 (40%), Gaps = 44/250 (17%)
Query: 563 INLLKE-GKGAYGIVYKAY-----DKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSF 616
I LL+ G GA+G VY+ + VA+K + E+ + ++ E L + F
Sbjct: 8 ITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESD-FLMEALIMSKF 66
Query: 617 QRHPNIITMLDIYKAVNNKDLYVVFEYMEN-DLNKVIRDKILKDVH--------IRYIMF 667
H NI+ ++ + + +++ E M DL +R+ + + +
Sbjct: 67 -NHQNIVRLIGVSFERLPR--FILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCAR 123
Query: 668 QLCNGLSYIHACKVMHRDLKPSNILIDKSCS-----IKIGDLGLARSLSDSKECLTEY-- 720
+ G Y+ +HRD+ N L+ +C KI D G+AR + + Y
Sbjct: 124 DVAKGCKYLEENHFIHRDIAARNCLL--TCKGPGRVAKIADFGMARDIYRA-----SYYR 176
Query: 721 ------IATRWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPGASTSHQLQL 772
+ +W PE + +T D+WS G +L E+ L P +PG + ++
Sbjct: 177 KGGRAMLPIKWM-PPEAFLDGI-FTSKTDVWSFGVLLWEIFSLGYMP-YPGRTNQEVMEF 233
Query: 773 IVNLVRPNPP 782
+ R +PP
Sbjct: 234 VTGGGRLDPP 243
>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine
Kinase, Zeta-chain-associated protein of 70kDa. Protein
Tyrosine Kinase (PTK) family; Zeta-chain-associated
protein of 70kDa (Zap-70); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Zap-70 is
a member of the Syk subfamily of kinases, which are
cytoplasmic (or nonreceptor) tyr kinases containing two
Src homology 2 (SH2) domains N-terminal to the catalytic
tyr kinase domain. Zap-70 is primarily expressed in
T-cells and NK cells, and is a crucial component in
T-cell receptor (TCR) signaling. Zap-70 binds the
phosphorylated ITAM (immunoreceptor tyr activation
motif) sequences of the activated TCR zeta-chain through
its SH2 domains, leading to its phosphorylation and
activation. It then phosphorylates target proteins,
which propagate the signals to downstream pathways.
Zap-70 is hardly detected in normal peripheral B-cells,
but is present in some B-cell malignancies. It is used
as a diagnostic marker for chronic lymphocytic leukemia
(CLL) as it is associated with the more aggressive
subtype of the disease.
Length = 257
Score = 56.9 bits (137), Expect = 1e-08
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 14/195 (7%)
Query: 569 GKGAYGIVYKA-YDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLD 627
G G +G V K Y KQ K+ + K+ RE + +P I+ M+
Sbjct: 4 GSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLD-NPYIVRMIG 62
Query: 628 IYKAVNNKDLYVVFEYME-NDLNKVI---RDKILKDVHIRYIMFQLCNGLSYIHACKVMH 683
+ +A L +V E LNK + +D+I ++ +M Q+ G+ Y+ +H
Sbjct: 63 VCEAEA---LMLVMEMASGGPLNKFLSGKKDEITVS-NVVELMHQVSMGMKYLEGKNFVH 118
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRW---YRAPEILISNRRYTH 740
RDL N+L+ KI D GL+++L A +W + APE I+ R+++
Sbjct: 119 RDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPEC-INFRKFSS 177
Query: 741 HVDIWSLGCILAEML 755
D+WS G + E
Sbjct: 178 RSDVWSYGITMWEAF 192
>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Tie
subfamily; catalytic (c) domain. The Tie subfamily
consists of Tie1 and Tie2. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie proteins are
receptor tyr kinases (RTKs) containing an extracellular
region, a transmembrane segment, and an intracellular
catalytic domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2, while no specific
ligand has been identified for Tie1. The binding of
Ang-1 to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. In vivo studies of Tie1 show that it is
critical in vascular development.
Length = 270
Score = 56.6 bits (136), Expect = 2e-08
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 25/207 (12%)
Query: 569 GKGAYGIVYKAYDKNN--KQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
G+G +G V KA K + + AIK++ E + +K D + E+ L HPNII +L
Sbjct: 4 GEGNFGQVLKARIKKDGLRMDAAIKRMKE-YASKDDHRDFAGELEVLCKLGHHPNIINLL 62
Query: 627 DIYKAVNNKDLYVVFEYME--NDLNKVIRDKILK----------------DVHIRYIMFQ 668
+ + LY+ EY N L+ + + ++L+ + +
Sbjct: 63 GACE--HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 120
Query: 669 LCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRA 728
+ G+ Y+ + +HRDL NIL+ ++ KI D GL+R + + RW
Sbjct: 121 VARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAI 180
Query: 729 PEILISNRRYTHHVDIWSLGCILAEML 755
+ S YT + D+WS G +L E++
Sbjct: 181 ESLNYS--VYTTNSDVWSYGVLLWEIV 205
>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
Length = 267
Score = 56.4 bits (137), Expect = 2e-08
Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 26/216 (12%)
Query: 547 KSIDQLMKDREDLQQQINLLKEGKGAYGIVYKAYDKN-NKQYVAIKKIFEAFRNKTDAQR 605
KS+ +L++ ++ + L K G +G V K K +V +KI +A +
Sbjct: 4 KSLSELVQFLKNCEIVKKL-KLIDGKFGKVSVLKHKPTQKLFV--QKIIKA--------K 52
Query: 606 TYREILFL--KSFQRHPNIITMLDIYKAVNN-KDLYVVFEYM-ENDLNKVIR-DKILKDV 660
+ I + + + +PN I + Y +V K ++ +Y+ + DL +++ + L +
Sbjct: 53 NFNAIEPMVHQLMKDNPNFIKL---YYSVTTLKGHVLIMDYIKDGDLFDLLKKEGKLSEA 109
Query: 661 HIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKS-CSIKIGDLGLARSLSDSKECLTE 719
++ I+ QL L+ +H ++H D+K N+L D++ I + D GL + + C
Sbjct: 110 EVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKI-IGTPSC--- 165
Query: 720 YIATRWYRAPEILISNRRYTHHVDIWSLGCILAEML 755
Y T Y +PE I Y D W++G + E+L
Sbjct: 166 YDGTLDYFSPE-KIKGHNYDVSFDWWAVGVLTYELL 200
>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Insulin-like Growth Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Insulin-like Growth
Factor-1 Receptor (IGF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. IGF-1R is
a receptor tyr kinases (RTK) that is composed of two
alphabeta heterodimers. Binding of the ligand (IGF-1 or
IGF-2) to the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, which stimulates downstream kinase
activities and biological function. IGF-1R signaling is
important in the differentiation, growth, and survival
of normal cells. In cancer cells, where it is frequently
overexpressed, IGF-1R is implicated in proliferation,
the suppression of apoptosis, invasion, and metastasis.
IGF-1R is being developed as a therapeutic target in
cancer treatment.
Length = 277
Score = 56.6 bits (136), Expect = 2e-08
Identities = 58/242 (23%), Positives = 119/242 (49%), Gaps = 38/242 (15%)
Query: 560 QQQINLLKE-GKGAYGIVYKAYDK-----NNKQYVAIKKIFEAFRNKTDAQRTYREIL-- 611
+++I + +E G+G++G+VY+ K + VAIK + N+ + R E L
Sbjct: 5 REKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTV-----NEAASMRERIEFLNE 59
Query: 612 --FLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYM-ENDLNKVIR--------DKILKDV 660
+K F H +++ +L + + V+ E M DL +R + +
Sbjct: 60 ASVMKEFNCH-HVVRLLGVVS--QGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPP 116
Query: 661 HIRYIM---FQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDS---K 714
++ ++ ++ +G++Y++A K +HRDL N ++ + ++KIGD G+ R + ++ +
Sbjct: 117 SLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR 176
Query: 715 ECLTEYIATRWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPGASTSHQLQL 772
+ + RW +PE L + +T + D+WS G +L E+ L +P + G S L+
Sbjct: 177 KGGKGLLPVRWM-SPESL-KDGVFTTYSDVWSFGVVLWEIATLAEQP-YQGMSNEQVLRF 233
Query: 773 IV 774
++
Sbjct: 234 VM 235
>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional.
Length = 391
Score = 57.3 bits (138), Expect = 3e-08
Identities = 65/280 (23%), Positives = 114/280 (40%), Gaps = 48/280 (17%)
Query: 571 GAYGIVYKAYDKNNKQYVAIKKIFEAFRNKTDAQR--TYREILFLKSFQRHPNIITMLDI 628
GA G + D ++V IK QR T E L++ HP+II +
Sbjct: 103 GAEGFAFACIDNKTCEHVVIKA----------GQRGGTATEAHILRAIN-HPSIIQLKGT 151
Query: 629 YKAVNNKDLYVVFEYMENDLNKVIRDKI-LKDVHIRYIMFQLCNGLSYIHACKVMHRDLK 687
+ NK ++ + DL + K + I I + + Y+H +++HRD+K
Sbjct: 152 F--TYNKFTCLILPRYKTDLYCYLAAKRNIAICDILAIERSVLRAIQYLHENRIIHRDIK 209
Query: 688 PSNILIDKSCSIKIGDLGLARSLSDSKECL-TEYIATRWY--------RAPEILISNRRY 738
NI I+ + +GD G A C + A ++Y APE+L + Y
Sbjct: 210 AENIFINHPGDVCLGDFGAA--------CFPVDINANKYYGWAGTIATNAPELLARD-PY 260
Query: 739 THHVDIWSLGCILAEM-------LQSKPLFPGASTSHQLQLIVNLVRPNPPHADKFYAGF 791
VDIWS G +L EM + L + Q++LI +R + H ++F
Sbjct: 261 GPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLI---IRRSGTHPNEFPIDA 317
Query: 792 KSKHEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQME 831
++ + + +K ++ S+ + N +L + +E
Sbjct: 318 QANLDE----IYIGLAKKSSRKPGSRPLWTNLYELPIDLE 353
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 58.1 bits (141), Expect = 3e-08
Identities = 117/484 (24%), Positives = 204/484 (42%), Gaps = 65/484 (13%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQR 83
EL++ LE ER ++ E+ + LS + E +S R L+E+
Sbjct: 50 ELEEELEAERAARAKAEKARADLSRELEELSER---------------------LEEAGG 88
Query: 84 RADNESETKKKAEVNLQVI-SDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQN 142
+ E KK E L + D+ E E LRK+ + EQ + +LQ
Sbjct: 89 ATAAQIELNKKREAELAKLRKDLEEANLQHEEALATLRKKHQD--AINELSEQ-IEQLQK 145
Query: 143 ILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQ 202
A E E+ LQ EV L A++ Q +K A K+LE +L L +L+
Sbjct: 146 QKAKAEKEKSQLQAEVDDLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLD-------- 197
Query: 203 LAEDNRHLGEKVSSLEKECRLQALNTELERNKH-RELQLAEDNRHLGEKVSSLE------ 255
E R L + S RLQ+ N++L R E Q++ ++ + S LE
Sbjct: 198 --ELQRQLNDLTSQKS---RLQSENSDLTRQLEEAEAQVSNLSKLKSQLESQLEEAKRSL 252
Query: 256 ----KECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSD 311
+E A+L +L+ + EE +++ E + E++ +K S+
Sbjct: 253 EEESRERANLQAQLRQLEHDLDSLREQLEEESEAK-AELERQLSKANAEIQQWRSKFESE 311
Query: 312 LSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLL-KEGAELRQELEKSKTLQSQV 370
+ + L K++ + I +L + E + + L K + L+ ELE LQ ++
Sbjct: 312 GALRAEELEELKKK---LNQKISELEEAAEAANAKCDSLEKTKSRLQSELE---DLQIEL 365
Query: 371 EQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVED 430
E+ A L+ A K + ++L E+ + RN+ E +LK
Sbjct: 366 ERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKN------ 419
Query: 431 LQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTH-RLQLAVARA 489
+++EL+DQ+E + + + + H+L ++L E RN+ ELE+ R L + +L A
Sbjct: 420 -ELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALE 478
Query: 490 DSEA 493
++EA
Sbjct: 479 EAEA 482
Score = 53.1 bits (128), Expect = 8e-07
Identities = 106/470 (22%), Positives = 186/470 (39%), Gaps = 64/470 (13%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKN-------LTILRH 76
EL++ E + LE+ + +L + E + +LEK L +
Sbjct: 332 ELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFDKILAEWKR 391
Query: 77 DLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSA----ELTVAKSA 132
+ E Q D + L + + E+LK + E R K +LT
Sbjct: 392 KVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGE 451
Query: 133 GEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVN----LHKELEGRLQA 188
G + V EL+ LE E+D LQ + +A + E S +A + E+E RL
Sbjct: 452 GGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIRSEIERRLAE 511
Query: 189 LNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHR-ELQLAE---DN 244
E E N + Q R + ++LE E + +A E R K + E + E
Sbjct: 512 KEEEFE-NTRKNHQ-----RAIESLQATLEAEAKGKA---EASRLKKKLEGDINELEIAL 562
Query: 245 RHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDL 304
H + + +K ++K Q Q ++E RA E+ ++ V + A+ + EL++L
Sbjct: 563 DHANKANAEAQKNVKKYQQQVKELQTQVEEEQRAREDAREQLAVAERRATA-LEAELEEL 621
Query: 305 MAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSK 364
RS L E +K + + + +++N L ++
Sbjct: 622 ----RSALEQAERA-----------RKQAET---ELAEASERVNELTA---------QNS 654
Query: 365 TLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKT 424
+L +Q + + + +LQSDL +E + R ++ + A L E R +E L+
Sbjct: 655 SLIAQKRKLEGELAALQSDLDEAVNELKAAEERAKKAQADAARLAEELRQEQEHSQHLER 714
Query: 425 KRSVEDLQMKELQDQLETEQYFST------LYKTQA--HELKEELDERSR 466
R + Q+KELQ +L+ + + + K +A EL+ ELD R
Sbjct: 715 LRKQLESQVKELQVRLDEAEAAALKGGKKMIQKLEARVRELEAELDGEQR 764
Score = 46.6 bits (111), Expect = 8e-05
Identities = 99/434 (22%), Positives = 175/434 (40%), Gaps = 54/434 (12%)
Query: 19 GQANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDL 78
G+ + +L + RR ++ +E Q L E A+ E ++ + + L+ +R ++
Sbjct: 450 GEGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEE----SKVLRAQVELSQIRSEI 505
Query: 79 KESQRRADNESETKKKAEV----NLQVISDMHEKLKTEA-ETATRLRKQSAELTVAKSAG 133
+ + E E +K +LQ + K K EA +L EL +A
Sbjct: 506 ERRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEASRLKKKLEGDINELEIALDHA 565
Query: 134 EQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTEL 193
+ E Q + QQ+V LQ ++ +E+ ++ A E R AL EL
Sbjct: 566 NKANAEAQKNV-------KKYQQQVKELQTQVEEEQRAREDAREQLAVAERRATALEAEL 618
Query: 194 ER-----------NKHRELQLAEDNRHLGE---KVSSLEK-----ECRLQALNTELERNK 234
E K E +LAE + + E + SSL E L AL ++L+
Sbjct: 619 EELRSALEQAERARKQAETELAEASERVNELTAQNSSLIAQKRKLEGELAALQSDLD-EA 677
Query: 235 HRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVR---AHEETQKSRMVNKE 291
EL+ AE E+ + + A L+ EL+ Q Q R E K V +
Sbjct: 678 VNELKAAE------ERAKKAQADAARLAEELRQEQEHSQHLERLRKQLESQVKELQVRLD 731
Query: 292 EASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLK 351
EA +K K ++ K + + E+ L + R + +K++ ++ + ++LQ Q+
Sbjct: 732 EAEAAALKGGKKMIQKLEARVRELEAELDGEQRRHAETQKNLRKMERRVKELQFQV---- 787
Query: 352 EGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREA 411
E ++ LE+ LQ V++ QAK + + L A ++ + E+ E
Sbjct: 788 --EEDKKNLER---LQDLVDKLQAKIKTYKRQLEEAEEVAQINLSKYRKAQRELEDAEER 842
Query: 412 KRNIEEEYHKLKTK 425
E +KL+ K
Sbjct: 843 ADTAERSLNKLRAK 856
Score = 43.5 bits (103), Expect = 9e-04
Identities = 109/497 (21%), Positives = 216/497 (43%), Gaps = 47/497 (9%)
Query: 105 MHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQAK 164
E+ K E E L ++ +EL+ S E + Q ++A L+ + L+ + L+ +
Sbjct: 1 ELERQKRELENQ--LYRKESELSQLSSKLE----DEQALVAQLQKKIKELEARIRELEEE 54
Query: 165 ISQERSSKTQAVNLHKELEGRLQALNTELER-----------NKHRELQLAEDNRHLGEK 213
+ ER+++ +A +L L+ L+ LE NK RE +LA+ + L E
Sbjct: 55 LEAERAARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLEEA 114
Query: 214 VSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQ 273
E +AL T ++++ +L+E L ++ + EKE + L E+ AQ
Sbjct: 115 NLQHE-----EALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLD 169
Query: 274 QEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREV----DY 329
Q +A +K + E+ + ++ D + + +DL+S++S L + +
Sbjct: 170 QIAKAKLNAEK--KAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEA 227
Query: 330 KKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTS 389
+ + L K + L+ Q+ K E +E + LQ+Q+ Q + SL+ L ++
Sbjct: 228 EAQVSNLSKLKSQLESQLEEAKRSLE--EESRERANLQAQLRQLEHDLDSLREQLEEESE 285
Query: 390 EAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTL 449
A L E QLS A +++ + E E +E+L+ K Q E E+
Sbjct: 286 AKAEL---ERQLSKANAEIQQWRSKFESE--GALRAEELEELKKKLNQKISELEE----- 335
Query: 450 YKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKE 509
+A K + E++++ L+ E E LQ+ + RA++ A ++ ++ E
Sbjct: 336 -AAEAANAKCDSLEKTKSRLQSELE------DLQIELERANAAASELEKKQKNFDKILAE 388
Query: 510 KTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEG 569
K EL+ + + + + + L K + K ++ L ++ ++LQ +I+ L +
Sbjct: 389 WKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQ 448
Query: 570 KGAYGIVYKAYDKNNKQ 586
G G +K ++
Sbjct: 449 LGEGGRNVHELEKARRR 465
Score = 36.2 bits (84), Expect = 0.13
Identities = 106/458 (23%), Positives = 175/458 (38%), Gaps = 76/458 (16%)
Query: 21 ANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKE 80
+L DL ++ R S+ + RQL E VS L QLE L + L+E
Sbjct: 199 LQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVS----NLSKLKSQLESQLEEAKRSLEE 254
Query: 81 SQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQ----SAELTVAKSAGEQM 136
R N ++ E +L + E+L+ E+E L +Q +AE+ +S E
Sbjct: 255 ESRERANLQAQLRQLEHDLDSL---REQLEEESEAKAELERQLSKANAEIQQWRSKFESE 311
Query: 137 VV----ELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVN----LHKELEGRLQA 188
EL+ + L + L++ AK +K++ + L ELE R A
Sbjct: 312 GALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELE-RANA 370
Query: 189 LNTELERN-KHRELQLAEDNRHLGEKVSSLE--------KECRLQALNTELERNKHRELQ 239
+ELE+ K+ + LAE R + E + L+ L L ELE K +
Sbjct: 371 AASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEA 430
Query: 240 LAEDNRHL--------------GEKVSSLEKECASLSLELKAAQAQYQ--QEVRAHEETQ 283
L +N++L G V LEK L E QA + + EE++
Sbjct: 431 LRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESK 490
Query: 284 KSR---------------MVNKEEASVEI----VKELKDLMAKHRSDLSSKESLLSNGKE 324
R + KEE + ++ L A ++ K K+
Sbjct: 491 VLRAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEASRLKKK 550
Query: 325 REVDYKK---SIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQ 381
E D + ++D K + Q+ + ++ ++ K LQ+QVE+EQ + +
Sbjct: 551 LEGDINELEIALDHANKANAEAQKNV---------KKYQQQVKELQTQVEEEQRAREDAR 601
Query: 382 SDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEY 419
L+V A L+A E+L + A++ E E
Sbjct: 602 EQLAVAERRATALEAELEELRSALEQAERARKQAETEL 639
Score = 30.4 bits (69), Expect = 7.2
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 17/178 (9%)
Query: 931 LSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQL 990
L KES LS + D + + QL K ++L+ +I L+EEL + + EK L
Sbjct: 13 LYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERAARAKAEKARADL 72
Query: 991 KQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFN 1050
+E L E+ R + G + A +K+E E KL+++L + +
Sbjct: 73 SRE----------LEELSERLE---EAGGATAAQIELNKKREAELAKLRKDLEEANLQHE 119
Query: 1051 QVVV----KCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETAS 1104
+ + K Q + EL Q+ + K K + E +E++ L +L + +
Sbjct: 120 EALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQIAKAKLN 177
>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine
Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine
Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4);
pseudokinase domain. The PTKc (catalytic domain) family,
to which this subfamily belongs, includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CCK4,
also called protein tyrosine kinase 7 (PTK7), is an
orphan receptor tyr kinase (RTK) containing an
extracellular region with seven immunoglobulin domains,
a transmembrane segment, and an intracellular inactive
pseudokinase domain. Studies in mice reveal that CCK4 is
essential for neural development. Mouse embryos
containing a truncated CCK4 die perinatally and display
craniorachischisis, a severe form of neural tube defect.
The mechanism of action of the CCK4 pseudokinase is
still unknown. Other pseudokinases such as HER3 rely on
the activity of partner RTKs.
Length = 275
Score = 56.3 bits (136), Expect = 3e-08
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 28/229 (12%)
Query: 556 REDLQQQINLLKEGKGAYGIVYKAYDKN----NKQYVAIKKIFEAFRNKTDAQRTYREIL 611
R +LQ+ L G+G +G V+ A K + + + K + +++ RE+
Sbjct: 4 RSNLQEITTL---GRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELD 60
Query: 612 FLKSFQRHPNIITMLDIYKAVNNKD-LYVVFEYME-NDLNKVIRDKILKD---------- 659
+ H N++ +L + + Y++ EY + DL + +R KD
Sbjct: 61 MFRKLS-HKNVVRLLGL---CREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLST 116
Query: 660 VHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECL-- 717
+ Q+ G+ ++ + +HRDL N L+ +K+ L L++ + +S+
Sbjct: 117 KQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLR 176
Query: 718 TEYIATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPL-FPGAS 765
I RW APE + + ++ D+WS G ++ E+ L F G S
Sbjct: 177 NALIPLRWL-APEAVQED-DFSTKSDVWSFGVLMWEVFTQGELPFYGLS 223
>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 3.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR3 (or Flt4) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. VEGFR3
preferentially binds the ligands VEGFC and VEGFD. VEGFR3
is essential for lymphatic endothelial cell (EC)
development and function. It has been shown to regulate
adaptive immunity during corneal transplantation. VEGFR3
is upregulated on blood vascular ECs in pathological
conditions such as vascular tumors and the periphery of
solid tumors. It plays a role in cancer progression and
lymph node metastasis. Missense mutations in the VEGFR3
gene are associated with primary human lymphedema.
Length = 338
Score = 56.2 bits (135), Expect = 4e-08
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 667 FQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECL---TEYIAT 723
FQ+ G+ ++ + K +HRDL NIL+ ++ +KI D GLAR + + + + +
Sbjct: 181 FQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPL 240
Query: 724 RWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPG 763
+W APE I ++ YT D+WS G +L E+ L + P +PG
Sbjct: 241 KWM-APES-IFDKVYTTQSDVWSFGVLLWEIFSLGASP-YPG 279
>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 1. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK1,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK1 plays a role in the regulation
of translational control and transcriptional activation.
It phosphorylates the transcription factors, CREB and
NFkappaB. It also phosphorylates the nucleosomal
proteins H3 and HMG-14. Increased phosphorylation of
MEK1 is associated with the development of cerebral
ischemic/hypoxic preconditioning.
Length = 290
Score = 55.4 bits (133), Expect = 6e-08
Identities = 51/227 (22%), Positives = 109/227 (48%), Gaps = 16/227 (7%)
Query: 569 GKGAYGIVY---KAYDKNNKQYVAIKKIFEAF----RNKTDAQRTYREILFLKSFQRHPN 621
G GAYG V+ K ++ + A+K + +A T+ RT R++L + ++ P
Sbjct: 9 GTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVL--EHIRQSPF 66
Query: 622 IITMLDIYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHAC 679
++T+ Y + L+++ +Y+ + + + K+ ++ ++ L ++H
Sbjct: 67 LVTLH--YAFQTDTKLHLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKL 124
Query: 680 KVMHRDLKPSNILIDKSCSIKIGDLGLARS-LSDSKECLTEYIATRWYRAPEILISNRR- 737
+++RD+K NIL+D + + + D GL++ D E + T Y AP+I+
Sbjct: 125 GIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGG 184
Query: 738 YTHHVDIWSLGCILAEMLQ-SKPLFPGASTSHQLQLIVNLVRPNPPH 783
+ VD WS+G ++ E+L + P + Q ++ +++ PP+
Sbjct: 185 HDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPY 231
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 56.4 bits (136), Expect = 7e-08
Identities = 33/105 (31%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Query: 665 IMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSD--SKECLTEYIA 722
+ Q+ + ++H+ ++HRD+K +NIL+ + +K+GD G ++ + S + +
Sbjct: 148 LFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCG 207
Query: 723 TRWYRAPEILISNRR--YTHHVDIWSLGCILAEMLQSKPLFPGAS 765
T +Y APEI RR Y+ D++SLG +L E+L K F G +
Sbjct: 208 TPYYVAPEIW---RRKPYSKKADMFSLGVLLYELLTLKRPFDGEN 249
>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor beta.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) beta; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
beta is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR beta forms homodimers or heterodimers
with PDGFR alpha, depending on the nature of the PDGF
ligand. PDGF-BB and PDGF-DD induce PDGFR beta
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
beta signaling leads to a variety of cellular effects
including the stimulation of cell growth and chemotaxis,
as well as the inhibition of apoptosis and GAP
junctional communication. It is critical in normal
angiogenesis as it is involved in the recruitment of
pericytes and smooth muscle cells essential for vessel
stability. Aberrant PDGFR beta expression is associated
with some human cancers. The continuously-active fusion
proteins of PDGFR beta with COL1A1 and TEL are
associated with dermatofibrosarcoma protuberans (DFSP)
and a subset of chronic myelomonocytic leukemia (CMML),
respectively.
Length = 401
Score = 55.8 bits (134), Expect = 7e-08
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 31/166 (18%)
Query: 667 FQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTE---YIAT 723
+Q+ NG+ ++ + +HRDL N+LI + +KI D GLAR + +++ ++
Sbjct: 246 YQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPL 305
Query: 724 RWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVRPNPPH 783
+W APE I N YT D+WS G +L E +F T + P P
Sbjct: 306 KWM-APES-IFNNLYTTLSDVWSFGILLWE------IFTLGGTPY----------PELPM 347
Query: 784 ADKFYAGFKS-------KHEREKFNQVVVKCQKELQELQ---SQVV 819
++FY K H ++ +++ KC +E E++ SQ+V
Sbjct: 348 NEQFYNAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLV 393
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase,
REarranged during Transfection protein. Protein
Tyrosine Kinase (PTK) family; RET (REarranged during
Transfection) protein; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. RET is a
receptor tyr kinase (RTK) containing an extracellular
region with four cadherin-like repeats, a
calcium-binding site, and a cysteine-rich domain, a
transmembrane segment, and an intracellular catalytic
domain. It is part of a multisubunit complex that binds
glial-derived neurotropic factor (GDNF) family ligands
(GFLs) including GDNF, neurturin, artemin, and
persephin. GFLs bind RET along with four GPI-anchored
coreceptors, bringing two RET molecules together,
leading to autophosphorylation, activation, and
intracellular signaling. RET is essential for the
development of the sympathetic, parasympathetic and
enteric nervous systems, and the kidney. RET disruption
by germline mutations causes diseases in humans
including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and
three related inherited cancers: multiple endocrine
neoplasia type 2A (MEN2A), MEN2B, and familial medullary
thyroid carcinoma (FMTC).
Length = 290
Score = 55.0 bits (132), Expect = 8e-08
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 667 FQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEY---IAT 723
+Q+ G+ Y+ K++HRDL N+L+ + +KI D GL+R + + + I
Sbjct: 134 WQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPV 193
Query: 724 RWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPG 763
+W A E L + YT D+WS G +L E+ L P +PG
Sbjct: 194 KWM-AIESL-FDHIYTTQSDVWSFGVLLWEIVTLGGNP-YPG 232
>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 2.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR2 (or Flk1) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of VEGFRs to their ligands, the VEGFs, leads to
receptor dimerization, activation, and intracellular
signaling. The carboxyl terminus of VEGFR2 plays an
important role in its autophosphorylation and
activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD
and VEGFE. VEGFR2 signaling is implicated in all aspects
of normal and pathological vascular endothelial cell
biology. It induces a variety of cellular effects
including migration, survival, and proliferation. It is
critical in regulating embryonic vascular development
and angiogenesis. VEGFR2 is the major signal transducer
in pathological angiogenesis including cancer and
diabetic retinopathy, and is a target for inhibition in
cancer therapy.
Length = 343
Score = 55.0 bits (132), Expect = 1e-07
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 667 FQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTE---YIAT 723
FQ+ G+ ++ + K +HRDL NIL+ ++ +KI D GLAR + + + + +
Sbjct: 186 FQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPL 245
Query: 724 RWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPG 763
+W APE I +R YT D+WS G +L E+ L + P +PG
Sbjct: 246 KWM-APET-IFDRVYTIQSDVWSFGVLLWEIFSLGASP-YPG 284
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 56.2 bits (136), Expect = 1e-07
Identities = 57/290 (19%), Positives = 105/290 (36%), Gaps = 33/290 (11%)
Query: 38 QLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESETKKKAEV 97
+L ER +Q E ++ A++ Q E+ L +L+E +R K+A +
Sbjct: 604 ELRERLQQAEEALQSAVAKQK-------QAEEQLVQANAELEEQKRAEAEARTALKQARL 656
Query: 98 NLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQE 157
+LQ + + + LK + E A RKQ AE + + + + Q ++ D +
Sbjct: 657 DLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELR 716
Query: 158 VATLQAKISQERSSKTQAVNLHKELEGRLQALNTEL---ERNKHRELQLAEDNRHLGEKV 214
L E Q L +E L ++ REL V
Sbjct: 717 TERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELA---SLDVDPNTV 773
Query: 215 SSLEKECRLQALNTELERNKHRE-----------------LQLAEDNRHLGEKVSSLEKE 257
L+++ ++ L T +ER R L E+ +L ++ LE
Sbjct: 774 KELKRQ--IEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESS 831
Query: 258 CASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAK 307
L EL + R E ++ + + + E+++ L+D M +
Sbjct: 832 AEELQQELTRLIKDTKLR-RKKLEQERKALEKQLDQLDELLRGLRDEMRQ 880
Score = 52.0 bits (125), Expect = 2e-06
Identities = 88/502 (17%), Positives = 179/502 (35%), Gaps = 70/502 (13%)
Query: 25 LKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTI----LRHDLKE 80
+DL + R + EE+ RQ + E + A E+ LR ++ + L L
Sbjct: 394 ERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGR 453
Query: 81 SQRRADN---ESETKKKAEVNLQVISDMHEKL-----KTEAETA--TRLRKQSAELTVAK 130
++R D+ E ++ E+N + + E+ E + +LRK+ E A
Sbjct: 454 LKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEAL 513
Query: 131 SAGEQMVVELQNILATLEM----ERDTLQQEVATLQAK--------ISQERSSKT--QAV 176
E+ +++L+ L LE+ + +L + IS E +T
Sbjct: 514 QRAERRLLQLRQALDELELQLSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQ 573
Query: 177 NLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHR 236
+ L ++ +L+R + E L E++ E+ AL + + + K
Sbjct: 574 LVEGSDSDTLYGVSLDLQRLDVPDYAANETE--LRERLQQAEE-----ALQSAVAKQKQA 626
Query: 237 ELQLAEDNRHLGEKVSSLEKECASLS---LELKAAQAQYQQEVRAHEETQKSRMVNKEEA 293
E QL + N L E+ + + +L L+L+ Q + Q E R E
Sbjct: 627 EEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQ 686
Query: 294 SVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEG 353
++ +LK L+ + ++ L + + E + + +L Q+ L
Sbjct: 687 LRQLDAQLKQLLEQQQAFLEALKDDFR---ELRTERLA---KWQVVEGELDNQLAQLSAA 740
Query: 354 AELRQELEKSKTLQSQVEQEQAKKF-----SLQSDLSVQTSEAAHLKAREEQLSHEVA-- 406
E + K++ + + + ++ + +L Q E R EV
Sbjct: 741 IEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREY 800
Query: 407 --------------MLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKT 452
I+ + + S E+LQ +EL ++ + +
Sbjct: 801 RAFMQETWLHRDSLREERPNLAIQLR----ELESSAEELQ-QELTRLIKDTKLRRKKLEQ 855
Query: 453 QAHELKEELDERSRNILELEEE 474
+ L+++LD+ + L +E
Sbjct: 856 ERKALEKQLDQLDELLRGLRDE 877
Score = 45.8 bits (109), Expect = 1e-04
Identities = 89/484 (18%), Positives = 176/484 (36%), Gaps = 45/484 (9%)
Query: 109 LKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQAKISQE 168
++ A +L++ +L S ++ ++A E Q+E + ++ Q+
Sbjct: 241 IQKVAPEIEKLQEDFEQL---LSLELRLQHLHGELVADEERLA-EEQEERQEAKNRLRQQ 296
Query: 169 RSSKTQAVN-LHKELEGRLQALNTELERNKHRELQLAEDNR--HLGEKVSSLEKECRLQA 225
+ + EL L A N +L EL+L ED + + L+ +
Sbjct: 297 LRTLEDQLKEARDELNQELSAANAKLA-ADRSELELLEDQKGAFEDADIEQLQAD----L 351
Query: 226 LNTELERNKHRELQLAEDNRHLGEKVSSLEKEC----ASLSLELKAAQAQYQQEVRAHEE 281
R++ E++ L K ++++ + +L+ + + + A E
Sbjct: 352 DQLPSIRSELEEVE--ARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIRE 409
Query: 282 TQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDRE 341
+ + EE + +L+ + + + + +E L R K+ +D E
Sbjct: 410 EKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRL---KQRLDSATATPE 466
Query: 342 DLQQQINLLKEGAELRQELEKS--KTLQSQVEQEQAKKFSLQSDLSVQTSEAA------H 393
+L+Q + + ++E E++ Q Q E Q +K ++ ++Q +E
Sbjct: 467 ELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQA 526
Query: 394 LKAREEQLSHEVAMLREAKRNIEEEYHKLKTKR-SVEDLQMKELQDQLETEQYFSTLYKT 452
L E QLS + L RN + + K S E L+ +L QL TLY
Sbjct: 527 LDELELQLSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGV 586
Query: 453 QAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKEKTM 512
+ ++ + + N EL E LQ AVA+ + AEE + + E
Sbjct: 587 SLDLQRLDVPDYAANETELRERLQQAEEALQSAVAK-------QKQAEEQLVQANAELEE 639
Query: 513 KELELKD-LMAKHRSDLSSKESLLSNGKEREVD-----YKKSIDQLMKDREDLQQQINLL 566
++ + A ++ L L N ++ D + Q L Q+ L
Sbjct: 640 QKRAEAEARTALKQARL--DLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQL 697
Query: 567 KEGK 570
E +
Sbjct: 698 LEQQ 701
Score = 45.1 bits (107), Expect = 3e-04
Identities = 99/557 (17%), Positives = 194/557 (34%), Gaps = 55/557 (9%)
Query: 23 GELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQ 82
GEL ER E + +E + +L +Q + E L++ +L + L+ L +
Sbjct: 270 GELVADEERLAEEQEERQEAKNRLRQQ---LRTLEDQLKEARDELNQELSAANAKLAADR 326
Query: 83 RRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQN 142
+ + K E E+L+ + + +R + E+ A ++Q
Sbjct: 327 SELELLEDQKGAFE------DADIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQR 380
Query: 143 ILATLEMERDT-LQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHREL 201
L+ + L++++ + + + + +E LQAL ++L + E
Sbjct: 381 KYERLKQKIKEQLERDLEKNNE---RLAAIREEKDRQKAAIEEDLQALESQL--RQQLEA 435
Query: 202 QLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASL 261
E N E L + + T + E E+ E L
Sbjct: 436 GKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQL 495
Query: 262 SLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSN 321
EL+ + + + + A + E + +++ L SLL
Sbjct: 496 QSELRQLRKRRDEALEAL---------QRAERRLLQLRQ--ALDELELQLSPQAGSLLHF 544
Query: 322 GKEREVDYKKSIDQLMK----DREDLQQQINLLKEGAELRQELEKSKTLQS-QVEQEQAK 376
+ +++SI +++ +R DL Q L EG++ S LQ V A
Sbjct: 545 LRNEAPGWEESIGKVISPELLERTDLDPQ---LVEGSDSDTLYGVSLDLQRLDVPDYAAN 601
Query: 377 KFSLQSDLSVQT----SEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQ 432
+ L+ L S A K EEQL A L E KR E LK R L
Sbjct: 602 ETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQAR----LD 657
Query: 433 MKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSE 492
++ LQ++ ++ + A + E + + +L+ + L + Q + +
Sbjct: 658 LQRLQNEQQSLK----DKLELA--IAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711
Query: 493 ALARSIA-----EETVGELEKEKTMKELELKDLMAKHRSDLSS-KESLLSNGKEREVDYK 546
+ GEL+ + ++ + ++ L K+ +VD
Sbjct: 712 FRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVD-P 770
Query: 547 KSIDQLMKDREDLQQQI 563
++ +L + E+L+ I
Sbjct: 771 NTVKELKRQIEELETTI 787
Score = 44.3 bits (105), Expect = 4e-04
Identities = 81/454 (17%), Positives = 175/454 (38%), Gaps = 23/454 (5%)
Query: 12 DNAIPNGGQANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNL 71
D A+ + + + +E+ + E+ QL +R+ + E + R LR + +LE L
Sbjct: 475 DEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQL 534
Query: 72 TILRHDLKE--SQRRADNESETKKKAEVNLQVISDMHEKLKTEAETAT----RLRKQSAE 125
+ L E K L +D+ +L +++ T L Q +
Sbjct: 535 SPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRLD 594
Query: 126 LTVAKSAGEQMVVELQNILATLEMERDTLQQ---EVATLQAKISQERSSKTQAVNLHKEL 182
+ + ++ LQ L+ +Q ++ A++ +++ ++ +A K+
Sbjct: 595 VPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQA 654
Query: 183 EGRLQALNTELERNKHR-ELQLAEDNRHLGEKVSSLEKECRL----QALNTELERNKHRE 237
LQ L E + K + EL +AE + ++ L+ + + Q E ++ RE
Sbjct: 655 RLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRE 714
Query: 238 LQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEI 297
L+ E L+ + A LS ++AA+ Q + ++ ++ + + +
Sbjct: 715 LRT-ERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASL-DVDPNT 772
Query: 298 VKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKS---IDQLMKDREDLQQQI-NLLKEG 353
VKELK + + + + +E +++ D L ++R +L Q+ L
Sbjct: 773 VKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSA 832
Query: 354 AELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKR 413
EL+QEL L + + K + L Q + L ++A L+E
Sbjct: 833 EELQQEL---TRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQLAELKEPAN 889
Query: 414 NIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFS 447
+ E + +E+ + K + + +++
Sbjct: 890 ANQAEGSISERLDQLEEFKRKRKRLSGDLKKFLE 923
Score = 37.0 bits (86), Expect = 0.078
Identities = 90/523 (17%), Positives = 178/523 (34%), Gaps = 54/523 (10%)
Query: 20 QANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLK 79
Q +E+ + ++ QL + +L E + A +D + E+ ++ L+
Sbjct: 335 QKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLE 394
Query: 80 ESQRRADNESETKKKAEVNLQVISDMHEKLKT-EAETATRLRKQSAELTVAKSAGEQMVV 138
+ N E + + + E L+ E++ +L E + E +
Sbjct: 395 RDLEK--NNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLG 452
Query: 139 ELQNILATLEMERDTLQQ--------------------EVATLQAKISQERSSKTQAVNL 178
L+ L + + L+Q V LQ+++ Q R + +A+
Sbjct: 453 RLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEA 512
Query: 179 HKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNK--HR 236
+ E RL L L+ + + A H + +E + ++ EL
Sbjct: 513 LQRAERRLLQLRQALDELELQLSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDP 572
Query: 237 ELQLAEDNRHLGEKVSSLEK----ECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEE 292
+L D+ L L++ + A+ EL+ Q ++ +++ QK EE
Sbjct: 573 QLVEGSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQK----QAEE 628
Query: 293 ASVEIVKELKDL---MAKHRSDLSSKESL---LSNGKEREVD-----YKKSIDQLMKDRE 341
V+ EL++ A+ R+ L L N ++ D + Q
Sbjct: 629 QLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLR 688
Query: 342 DLQQQINLLKEG-----AELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKA 396
L Q+ L E L+ + + +T + Q + Q EAA +A
Sbjct: 689 QLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQA 748
Query: 397 REEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMK---ELQDQLETEQYFSTLYKTQ 453
+ + RE + + KR +E+L+ + E +Y + + +T
Sbjct: 749 KARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETW 808
Query: 454 AHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALAR 496
H ++ L E N+ E LQ + R + R
Sbjct: 809 LH--RDSLREERPNLAIQLRELESSAEELQQELTRLIKDTKLR 849
>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase,
Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK)
family; Spleen tyrosine kinase (Syk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk,
together with Zap-70, form the Syk subfamily of kinases
which are cytoplasmic (or nonreceptor) tyr kinases
containing two Src homology 2 (SH2) domains N-terminal
to the catalytic tyr kinase domain. Syk was first cloned
from the spleen, and its function in hematopoietic cells
is well-established. Syk is involved in the signaling
downstream of activated receptors (including B-cell and
Fc receptors) that contain ITAMs (immunoreceptor tyr
activation motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. More recently, Syk
expression has been detected in other cell types
(including epithelial cells, vascular endothelial cells,
neurons, hepatocytes, and melanocytes), suggesting a
variety of biological functions in non-immune cells. Syk
plays a critical role in maintaining vascular integrity
and in wound healing during embryogenesis. It also
regulates Vav3, which is important in osteoclast
function including bone development. In breast
epithelial cells, where Syk acts as a negative regulator
for epidermal growth factor receptor (EGFR) signaling,
loss of Syk expression is associated with abnormal
proliferation during cancer development suggesting a
potential role as a tumor suppressor. In mice, Syk has
been shown to inhibit malignant transformation of
mammary epithelial cells induced with murine mammary
tumor virus (MMTV).
Length = 257
Score = 53.8 bits (129), Expect = 1e-07
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 569 GKGAYGIVYKAYDKNNK--QYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
G G +G V K K K + VA+K + + RE ++ +P I+ M+
Sbjct: 4 GSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLD-NPYIVRMI 62
Query: 627 DIYKAVNNKDLYVVFEYME-NDLNKVI-RDKILKDVHIRYIMFQLCNGLSYIHACKVMHR 684
I +A + +V E E LNK + ++K + + +I ++ Q+ G+ Y+ +HR
Sbjct: 63 GICEAES---WMLVMELAELGPLNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNFVHR 119
Query: 685 DLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRW---YRAPEILISNRRYTHH 741
DL N+L+ KI D GL+++L + +W + APE + + +++
Sbjct: 120 DLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECM-NYYKFSSK 178
Query: 742 VDIWSLGCILAE 753
D+WS G ++ E
Sbjct: 179 SDVWSFGVLMWE 190
>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase,
Axl. Protein Tyrosine Kinase (PTK) family; Axl;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl is a member of the
Axl subfamily, which is composed of receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with two immunoglobulin-like domains followed by two
fibronectin type III repeats, a transmembrane segment,
and an intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl is widely expressed in a
variety of organs and cells including epithelial,
mesenchymal, hematopoietic, as well as non-transformed
cells. Axl signaling is important in many cellular
functions such as survival, anti-apoptosis,
proliferation, migration, and adhesion. Axl was
originally isolated from patients with chronic
myelogenous leukemia and a chronic myeloproliferative
disorder. Axl is overexpressed in many human cancers
including colon, squamous cell, thyroid, breast, and
lung carcinomas.
Length = 272
Score = 53.5 bits (128), Expect = 2e-07
Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 23/218 (10%)
Query: 569 GKGAYGIVYKAYDKNNKQY---VAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITM 625
G+G +G V + N VA+K + A +++ + E + +K F HPN++ +
Sbjct: 8 GEGEFGSVMEG-QLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFD-HPNVMRL 65
Query: 626 LDIYKAVNNKDLY----VVFEYMEN-DLNKVIRDKILKDVHIRY-------IMFQLCNGL 673
+ + + Y V+ +M++ DL+ + L D M + +G+
Sbjct: 66 IGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGM 125
Query: 674 SYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIA---TRWYRAPE 730
Y+ + +HRDL N +++++ ++ + D GL++ + + IA +W A E
Sbjct: 126 EYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWI-AIE 184
Query: 731 ILISNRRYTHHVDIWSLGCILAEM-LQSKPLFPGASTS 767
L ++R YT D+WS G + E+ + + +PG S
Sbjct: 185 SL-ADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENS 221
>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine
Kinase, Tie2. Protein Tyrosine Kinase (PTK) family;
Tie2; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie2 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie2 is expressed
mainly in endothelial cells and hematopoietic stem
cells. It is also found in a subset of tumor-associated
monocytes and eosinophils. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2. The binding of Ang-1
to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. Tie2 signaling plays key regulatory roles in
vascular integrity and quiescence, and in inflammation.
Length = 303
Score = 53.5 bits (128), Expect = 3e-07
Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 33/278 (11%)
Query: 569 GKGAYGIVYKAYDKNN--KQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
G+G +G V KA K + + AIK++ E + +K D + E+ L HPNII +L
Sbjct: 16 GEGNFGQVLKARIKKDGLRMDAAIKRMKE-YASKDDHRDFAGELEVLCKLGHHPNIINLL 74
Query: 627 DIYKAVNNKDLYVVFEY---------------MENDLNKVIRDKI---LKDVHIRYIMFQ 668
+ + LY+ EY +E D I + L + +
Sbjct: 75 GACE--HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 132
Query: 669 LCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRA 728
+ G+ Y+ + +HRDL NIL+ ++ KI D GL+R + + RW
Sbjct: 133 VARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAI 192
Query: 729 PEILISNRRYTHHVDIWSLGCILAEM--LQSKPL--FPGASTSHQLQLIVNLVRP---NP 781
+ S YT + D+WS G +L E+ L P A +L L +P +
Sbjct: 193 ESLNYS--VYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDD 250
Query: 782 PHADKFYAGFKSK-HEREKFNQVVVKCQKELQELQSQV 818
D ++ K +ER F Q++V + L+E ++ V
Sbjct: 251 EVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTYV 288
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family;
HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER3 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER3 binds the neuregulin ligands, NRG1 and
NRG2. HER3 contains an impaired tyr kinase domain and
relies on its heterodimerization partners for activity
following ligand binding. The HER2-HER3 heterodimer
constitutes a high affinity co-receptor capable of
potent mitogenic signaling. HER3 participates in a
signaling pathway involved in the proliferation,
survival, adhesion, and motility of tumor cells.
Length = 279
Score = 53.4 bits (128), Expect = 3e-07
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 668 QLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSL-SDSKECLTEYIAT--R 724
Q+ G+ Y+ +++HR+L NIL+ ++I D G+A L D K+ T +
Sbjct: 117 QIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIK 176
Query: 725 WYRAPEILISNRRYTHHVDIWSLGCILAEML 755
W IL RYTH D+WS G + EM+
Sbjct: 177 WMALESILF--GRYTHQSDVWSYGVTVWEMM 205
>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine
Kinases, Vascular Endothelial Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor (VEGFR) subfamily;
catalytic (c) domain. The VEGFR subfamily consists of
VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. There are five
VEGF ligands in mammals, which bind, in an overlapping
pattern to the three VEGFRs, which can form homo or
heterodimers. VEGFRs regulate the cardiovascular system.
They are critical for vascular development during
embryogenesis and blood vessel formation in adults. They
induce cellular functions common to other growth factor
receptors such as cell migration, survival, and
proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta
growth factor (PLGF). It regulates monocyte and
macrophage migration, vascular permeability,
haematopoiesis, and the recruitment of haematopietic
progenitor cells from the bone marrow.
Length = 337
Score = 52.2 bits (125), Expect = 8e-07
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 667 FQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIA---T 723
FQ+ G+ ++ + K +HRDL NIL+ ++ +KI D GLAR + + + + A
Sbjct: 180 FQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPL 239
Query: 724 RWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPG 763
+W APE I ++ YT D+WS G +L E+ L + P +PG
Sbjct: 240 KWM-APES-IFDKVYTTQSDVWSFGVLLWEIFSLGASP-YPG 278
>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor alpha.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) alpha; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
alpha is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR alpha forms homodimers or heterodimers
with PDGFR beta, depending on the nature of the PDGF
ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
alpha signaling is important in the formation of lung
alveoli, intestinal villi, mesenchymal dermis, and hair
follicles, as well as in the development of
oligodendrocytes, retinal astrocytes, neural crest
cells, and testicular cells. Aberrant PDGFR alpha
expression is associated with some human cancers.
Mutations in PDGFR alpha have been found within a subset
of gastrointestinal stromal tumors (GISTs). An active
fusion protein FIP1L1-PDGFR alpha, derived from
interstitial deletion, is associated with idiopathic
hypereosinophilic syndrome (HES) and chronic
eosinophilic leukemia (CEL).
Length = 400
Score = 52.3 bits (125), Expect = 9e-07
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 22/148 (14%)
Query: 667 FQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTE---YIAT 723
+Q+ G+ ++ + +HRDL N+L+ + +KI D GLAR + +++ ++
Sbjct: 244 YQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPV 303
Query: 724 RWYRAPEILISNRRYTHHVDIWSLGCILAEMLQ-SKPLFPGASTSHQLQLIVNLVRPNPP 782
+W APE + N YT D+WS G +L E+ +PG +IV+ N
Sbjct: 304 KWM-APESIFDN-LYTTLSDVWSYGILLWEIFSLGGTPYPG--------MIVDSTFYN-- 351
Query: 783 HADKFYAGF---KSKHEREKFNQVVVKC 807
K +G+ K H ++ ++VKC
Sbjct: 352 ---KIKSGYRMAKPDHATQEVYDIMVKC 376
>gnl|CDD|149849 pfam08912, Rho_Binding, Rho Binding. Rho Binding Domain is
responsible for the recognition and binding of Rho
binding domain-containing proteins (such as ROCK) to Rho,
resulting in activation of the GTPase which in turn
modulates the phosphorylation of various signalling
proteins. This domain is within an amphipathic
alpha-helical coiled-coil and interacts with Rho through
predominantly hydrophobic interactions.
Length = 68
Score = 47.1 bits (112), Expect = 1e-06
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 949 KKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKL----HKQLKQEQLLKAQAVNKL 1004
K + L ++E+L ++ +EEL+K + + + KQL+ E+ LK QAVNKL
Sbjct: 1 TKDVANLANEKEELNNKLKKAQEELQKLKEEEQSINNIKAAFEKQLQTERTLKTQAVNKL 60
Query: 1005 AEIMNRKD 1012
AEIMNRKD
Sbjct: 61 AEIMNRKD 68
>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear
Dbf2-Related kinase-like Protein Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), NDR kinase
subfamily, fungal NDR-like proteins, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The NDR subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This group is
composed of fungal NDR-like proteins including
Saccharomyces cerevisiae CBK1 (or CBK1p),
Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago
maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like
NDR kinase, group members contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. CBK1 is an essential component in the RAM
(regulation of Ace2p activity and cellular
morphogenesis) network. CBK1 and Orb6 play similar roles
in coordinating cell morphology with cell cycle
progression. Ukc1 is involved in morphogenesis,
pathogenicity, and pigment formation. Cot1 plays a role
in polar tip extension.
Length = 377
Score = 52.2 bits (125), Expect = 1e-06
Identities = 63/260 (24%), Positives = 107/260 (41%), Gaps = 60/260 (23%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIF--EAFRNKTDAQ-RTYREILFLKSFQRHPNIITM 625
GKGA+G V K+ + A+K + E F+ A + R++L + P ++++
Sbjct: 10 GKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVL---AESDSPWVVSL 66
Query: 626 LDIYKAVNNKDLYVVFEYMEN-DL-NKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMH 683
Y + + LY++ E++ DL +I+ + R+ M + + +H +H
Sbjct: 67 Y--YSFQDAQYLYLIMEFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGFIH 124
Query: 684 RDLKPSNILIDKSCSIKIGDLGL---------------------ARSLSDSKECLT---- 718
RD+KP NILID+ IK+ D GL ++ D++ +
Sbjct: 125 RDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSI 184
Query: 719 -------EYIATRW----------------YRAPEILISNRRYTHHVDIWSLGCILAEML 755
+ IAT W Y APEI + + Y D WSLG I+ E L
Sbjct: 185 NLTMSSKDQIAT-WKKNRRLMAYSTVGTPDYIAPEIFLQ-QGYGQECDWWSLGAIMFECL 242
Query: 756 QSKPLFPGASTSHQLQLIVN 775
P F ++ + I+N
Sbjct: 243 IGWPPFCSENSHETYRKIIN 262
>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR1 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. NDR1 is
highly expressed in thymus, muscle, lung and spleen. It
is not an essential protein because mice deficient of
NDR1 remain viable and fertile. However, these mice
develop T-cell lymphomas and appear to be hypersenstive
to carcinogenic treatment. NDR1 appears to act as a
tumor suppressor. NDR1 is also called STK38.
Length = 363
Score = 52.0 bits (124), Expect = 1e-06
Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 48/248 (19%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEA---FRNKTDAQRTYREILFLKSFQRHPNIITM 625
G+GA+G V K+ A+K + +A + + R R+IL + + +
Sbjct: 10 GRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILV------EADSLWV 63
Query: 626 LDIYKAVNNK-DLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVM 682
+ ++ + +K +LY++ E++ + +++ L + ++ + + + IH +
Sbjct: 64 VKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFI 123
Query: 683 HRDLKPSNILIDKSCSIKIGDLGLA------------RSLSDS----------------- 713
HRD+KP N+L+D +K+ D GL R+L+ S
Sbjct: 124 HRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAE 183
Query: 714 ------KECLTEYIATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTS 767
++ + T Y APE+ + Y D WSLG I+ EML P F +
Sbjct: 184 TWKRNRRQLAFSTVGTPDYIAPEVFMQT-GYNKLCDWWSLGVIMYEMLIGYPPFCSETPQ 242
Query: 768 HQLQLIVN 775
+ ++N
Sbjct: 243 ETYKKVMN 250
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor
(SCF), leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. Kit signaling is
involved in major cellular functions including cell
survival, proliferation, differentiation, adhesion, and
chemotaxis. Mutations in Kit, which result in
constitutive ligand-independent activation, are found in
human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 51.0 bits (122), Expect = 2e-06
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 667 FQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSL-SDSKECL--TEYIAT 723
+Q+ G+S++ + +HRDL NIL+ KI D GLAR + +DS + +
Sbjct: 221 YQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPV 280
Query: 724 RWYRAPEILISNRRYTHHVDIWSLGCILAEM--LQSKPLFPG 763
+W APE I N YT D+WS G +L E+ L S P +PG
Sbjct: 281 KWM-APES-IFNCVYTFESDVWSYGILLWEIFSLGSSP-YPG 319
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 51.3 bits (122), Expect = 3e-06
Identities = 108/547 (19%), Positives = 219/547 (40%), Gaps = 39/547 (7%)
Query: 31 RERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESE 90
E+ E ++ ++ + + A E DE + + +LK++ E
Sbjct: 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE 1422
Query: 91 TKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEME 150
KKKAE + +D +K EA+ A +K++ E E+ + + E +
Sbjct: 1423 AKKKAEEKKK--ADEAKKKAEEAKKADEAKKKAEE----AKKAEEAKKKAEEAKKADEAK 1476
Query: 151 RDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHL 210
+ + + A K ++E K E + + E K E + AE+ +
Sbjct: 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA 1536
Query: 211 -----GEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKEC------A 259
E+ ++ + + L E+ K E + AE+++++ + + K+
Sbjct: 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
Query: 260 SLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLL 319
+ L + + + ++ +A E K+ + K E E K+++ L K + E L
Sbjct: 1597 VMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE---EEKKKVEQLKKKEAEEKKKAEEL- 1652
Query: 320 SNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKF- 378
K E + K+ ++ K ED ++ K +E EK + E E+AKK
Sbjct: 1653 --KKAEEENKIKAAEEAKKAEEDKKKAEEAKKA-----EEDEKKAAEALKKEAEEAKKAE 1705
Query: 379 SLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQD 438
L+ + + +A LK EE+ + EAK+ EE+ K + + E+ + K
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEENKIKA---EEAKKEAEEDKKKAEEAKKDEEEKKKIAHL 1762
Query: 439 QLETEQYFSTLYKTQAHELKEELDER-SRNILELEEERGDLTHRLQLAVARADSEALARS 497
+ E E+ + K + ++EELDE + +E++++ D+ + L +
Sbjct: 1763 KKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVIN 1822
Query: 498 IAEETVGELEKE---KTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMK 554
++E KE +LE D KH+ + +++ N +E D+ K D
Sbjct: 1823 DSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGN---KEADFNKEKDLKED 1879
Query: 555 DREDLQQ 561
D E++++
Sbjct: 1880 DEEEIEE 1886
Score = 45.1 bits (106), Expect = 3e-04
Identities = 77/500 (15%), Positives = 194/500 (38%), Gaps = 14/500 (2%)
Query: 80 ESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVE 139
E+ ++A+ + ++A+ + ++ + EA A R+Q+A ++ + +
Sbjct: 1227 EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADE-LKK 1285
Query: 140 LQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHR 199
+ E ++ +++ + K ++E +A +E + + A + E K
Sbjct: 1286 AEEKKKADEAKKAEEKKKADEAKKK-AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
Query: 200 ELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECA 259
+ ++ + E++ E + K + + + ++ +E
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
Query: 260 SLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLL 319
+ ELK A A ++ A ++ ++ + ++ + E K+ + K ++E+
Sbjct: 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
Query: 320 SNGKEREVD-------YKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQ 372
+ ++ D K D+ K E+ +++ + K+ AE +++ +++K + +
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
Query: 373 EQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIE---EEYHKLKTKRSVE 429
++AKK KA E + + E+ E K+ E E K R E
Sbjct: 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE 1584
Query: 430 DLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARA 489
+ + E E + + K +A E K+ + + + EL++ + QL A
Sbjct: 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK-AEELKKAEEEKKKVEQLKKKEA 1643
Query: 490 DSEALARSI-AEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKS 548
+ + A + E +++ + K+ E A+ E + ++E + K
Sbjct: 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Query: 549 IDQLMKDREDLQQQINLLKE 568
++L K + +++ LK+
Sbjct: 1704 AEELKKKEAEEKKKAEELKK 1723
Score = 30.9 bits (69), Expect = 6.5
Identities = 31/162 (19%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 943 EREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVN 1002
++ + KK ++QL K + +++ EEL+K+ ++ + +E KA+
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKK----AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
Query: 1003 KLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQE 1062
K E + + + + +++KKE E +K +EL + E+ + +KE +E
Sbjct: 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
Query: 1063 LQSQVVE---ENTSKLKLQMELDSKDSEIEQLQGKLAALGSE 1101
+ + E + K K+ ++ + E+++ + A+ E
Sbjct: 1742 DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 50.9 bits (122), Expect = 4e-06
Identities = 113/554 (20%), Positives = 187/554 (33%), Gaps = 79/554 (14%)
Query: 41 ERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRAD--NESETKKKAEVN 98
E+ + ++ E + + RD + +LE++L L L+ E E
Sbjct: 452 EQVQAFLKEAEEIMQAKRQKRDRLLELEEDLETLELQLRHLDAAGAVPTEEEVAAARARR 511
Query: 99 LQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEV 158
+ D +R+ A L SA E+ V E + LA Q V
Sbjct: 512 DALWQD--------------IRRGYALLEPTASAYEEAV-ESADQLAD---RLLREAQLV 553
Query: 159 ATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLA-------------E 205
LQ+ QE +++ + L KELE AL L + A
Sbjct: 554 GELQSLRQQEEAARRRLEQLEKELEVLELAL-AALREAWQAQWAAAGLPLTPAEMEDWLA 612
Query: 206 DNRHLGEKVSSLEKECR----------------LQALNTELERNKHRELQ-LAEDNRHLG 248
+ E+V + K AL EL L E R L
Sbjct: 613 ERATAREQVRAYFKARAELDALLDRRARLRAALRAALKAVAIVLPGEELAELLELARQLL 672
Query: 249 EKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKH 308
E+ ASL L+ A+ ++ H+E Q + +E+ + + E
Sbjct: 673 EEAEKQAARKASLDERLRDAERALEEAEERHDEAQSALEAWQEQWY-DALLEAGLGGRAS 731
Query: 309 RSDLSSKESLLSNGKER---EVDYKKSIDQLMKDREDLQQQINLLKEGAELR-------Q 358
+ LL N KE+ D ++ I + +D ++++ L E +
Sbjct: 732 PAGALDALELLQNIKEKLQAADDLRQRIAAMERDLARFEEEVEALAEAVAPEMLGTPADE 791
Query: 359 ELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEV-AMLREAKRNIEE 417
K + A L ++ E + A ++ + A+LR A+ E
Sbjct: 792 TARALKQRLKRARDTAAAAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLRAARCTTIE 851
Query: 418 EYHKLKTKR---SVEDLQMKELQDQLETEQYFSTL-------YKTQAHELKEELDERSRN 467
E + ++ L+ L +L EL L+E +R+
Sbjct: 852 ELLAAVERSDTYRELRKRIAALERTLVRAGGGLSLEALVAEAAALDPDELPARLEELARD 911
Query: 468 ILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSD 527
I ELEEE +L ++ A+ LAR T ELE E+ +L+DL A+ +
Sbjct: 912 IEELEEELNELAQ--EVGAAKQ---ELARMDGGSTAAELEAERESLLAQLRDL-AERYLE 965
Query: 528 LSSKESLLSNGKER 541
L+ LL ER
Sbjct: 966 LALASRLLRKAIER 979
Score = 42.1 bits (99), Expect = 0.002
Identities = 74/423 (17%), Positives = 145/423 (34%), Gaps = 26/423 (6%)
Query: 20 QANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEK---NLTILRH 76
A ELK+L E E RE+ + L + + LR E+ QLEK L LR
Sbjct: 154 VALKELKEL-EAEIREVQLKTRTWKDLVKALDEAEEELANLRKELRQLEKEKQRLERLRR 212
Query: 77 DLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETAT-RLRKQSAELTVAKSAGEQ 135
L R E + EV + + AE R + + E
Sbjct: 213 LLPLLAERKALEQQLAALGEVIDLPPDAVERYEEARAELRAARRNLELLTERLEALQAEL 272
Query: 136 MVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELER 195
+ L L + L Q+ + + + N + L + + +
Sbjct: 273 DEISLDEELLAQAAAIEALHQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIGPDADE 332
Query: 196 NKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLE 255
L+ + + E V+ LEK R +AL+ L+ + + + + + ++++L
Sbjct: 333 EAVESLRPSLAAK---ETVTELEK--RKEALDQALKSARDALEERERELKQVRAQLAALP 387
Query: 256 KECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKEL----KDLMAKHRSD 311
L A A ++ A + + + + + L DL
Sbjct: 388 TVTVPEPLRAALADALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALP 447
Query: 312 LSSKESLLSNGKERE------VDYKKSIDQLMKDREDLQQQINLLKEGAEL--RQELEKS 363
+ S E + + KE E + + +L +D E L+ Q+ L + +E+ +
Sbjct: 448 VPSAEQVQAFLKEAEEIMQAKRQKRDRLLELEEDLETLELQLRHLDAAGAVPTEEEVAAA 507
Query: 364 KTLQSQVEQEQAKKFSLQSDLSVQTSEAA--HLKAREEQLSH--EVAMLREAKRNIEEEY 419
+ + + Q+ + ++L + EA + + L V L+ ++ E
Sbjct: 508 RARRDALWQDIRRGYALLEPTASAYEEAVESADQLADRLLREAQLVGELQSLRQQEEAAR 567
Query: 420 HKL 422
+L
Sbjct: 568 RRL 570
Score = 40.9 bits (96), Expect = 0.005
Identities = 110/603 (18%), Positives = 202/603 (33%), Gaps = 103/603 (17%)
Query: 41 ERQRQLSEQYEAVSARETALRDEMGQLEKNL----------------TILRHDLKESQRR 84
E +L ++ EA+ + RD + + E+ L LR L ++ R
Sbjct: 346 ETVTELEKRKEALDQALKSARDALEERERELKQVRAQLAALPTVTVPEPLRAALADALRA 405
Query: 85 ADN-------ESETKKKAEVNLQVIS-------DMHEKLKTE---AETATRLRKQSAELT 127
D E E Q +S D+ E + AE K++ E+
Sbjct: 406 GDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALPVPSAEQVQAFLKEAEEIM 465
Query: 128 VAKSAGEQMVVELQNILATLEME----------------------RDTLQQEVATLQAKI 165
AK ++EL+ L TLE++ RD L Q++ A +
Sbjct: 466 QAKRQKRDRLLELEEDLETLELQLRHLDAAGAVPTEEEVAAARARRDALWQDIRRGYALL 525
Query: 166 SQERSSKTQAVNLHKELE----------GRLQALNTELERNKHRELQLAEDNRHLGEKVS 215
S+ +AV +L G LQ+L + E + R QL ++ L ++
Sbjct: 526 EPTASAYEEAVESADQLADRLLREAQLVGELQSLRQQEEAARRRLEQLEKELEVLELALA 585
Query: 216 SLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQE 275
+L + + Q L + E+V + K A L L +A+ +
Sbjct: 586 ALREAWQAQWAAAGLPLTPAEMEDWLAERATAREQVRAYFKARAELD-ALLDRRARLRAA 644
Query: 276 VRAHEETQKSRMVNKEEASVEIVKE-LKDLMAKHRSDLSSKESLLSNGKEREVDYKKSID 334
+RA + + +E A + + L + K + +S + L + + + ++ D
Sbjct: 645 LRAALKAVAIVLPGEELAELLELARQLLEEAEKQAARKASLDERLRDAERALEEAEERHD 704
Query: 335 QLMKDREDLQQQINLLKEGAELRQELEKS------KTLQSQVEQEQA------KKFSLQS 382
+ E Q+Q A L + + LQ+ E+ QA + +++
Sbjct: 705 EAQSALEAWQEQWYDALLEAGLGGRASPAGALDALELLQNIKEKLQAADDLRQRIAAMER 764
Query: 383 DLSVQTSEAAHLKAR---------EEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQM 433
DL+ E L ++ + + + R+ KL + + ++
Sbjct: 765 DLARFEEEVEALAEAVAPEMLGTPADETARALKQRLKRARDTAAAAEKLAEEIEEAEKEV 824
Query: 434 KELQDQLET-EQYFSTLYKTQAHELKEELD---ERSRNILELEEERGDLTHRLQLAVARA 489
E L+ E + L + EEL ERS EL + L L A
Sbjct: 825 SEAAAALDEAEARLTALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGL 884
Query: 490 DSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSI 549
EAL A EL + + D+ E L+ + K+ +
Sbjct: 885 SLEALVAEAAALDPDELPAR-----------LEELARDIEELEEELNELAQEVGAAKQEL 933
Query: 550 DQL 552
++
Sbjct: 934 ARM 936
Score = 39.0 bits (91), Expect = 0.017
Identities = 96/470 (20%), Positives = 170/470 (36%), Gaps = 48/470 (10%)
Query: 16 PNGGQANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALR-----DEMGQLEKN 70
P+ + E + L RR + L ER L + + +S E L + + Q
Sbjct: 238 PDAVERYEEARAELRAARRNLELLTERLEALQAELDEISLDEELLAQAAAIEALHQQRGE 297
Query: 71 LTILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAK 130
DL + + N E A + Q+ D E+ + ++ EL K
Sbjct: 298 YRNAEQDLPDREGEIANARE--AAAALLAQIGPDADEEAVESLRPSLAAKETVTELEKRK 355
Query: 131 SAGEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKT-QAVNLHKELEGRLQAL 189
A +Q + ++ L E E ++ ++A L E +++ L AL
Sbjct: 356 EALDQALKSARDALEERERELKQVRAQLAALPTVTVPEPLRAALADALRAGDIDAALAAL 415
Query: 190 NTELERNKHRELQ----LAEDNRHLGE----KVSSLEKECRLQALNTELERNKH----RE 237
E+ K Q L L E V S E+ E+ + K R
Sbjct: 416 EQEVAVAKRELAQALSRLGLWRGDLEELVALPVPSAEQVQAFLKEAEEIMQAKRQKRDRL 475
Query: 238 LQLAEDNRHLGEKVSSLEKECASLSLE----LKAAQAQYQQEVRAHEETQKSRMVNKEEA 293
L+L ED L ++ L+ A + E +A + Q++R + EEA
Sbjct: 476 LELEEDLETLELQLRHLDAAGAVPTEEEVAAARARRDALWQDIRRGYALLEPTASAYEEA 535
Query: 294 SVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEG 353
VE +L D + + + +SL + +QL K+ E L+ + L+E
Sbjct: 536 -VESADQLADRLLREAQLVGELQSLRQQEEAARRRL----EQLEKELEVLELALAALREA 590
Query: 354 --------------AELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREE 399
AE+ L + T + QV + L + L + A L+A +
Sbjct: 591 WQAQWAAAGLPLTPAEMEDWLAERATAREQVRAYFKARAELDALLDRRARLRAALRAALK 650
Query: 400 QLSH-----EVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQ 444
++ E+A L E R + EE K +++ D ++++ + LE +
Sbjct: 651 AVAIVLPGEELAELLELARQLLEEAEKQAARKASLDERLRDAERALEEAE 700
Score = 38.2 bits (89), Expect = 0.029
Identities = 58/318 (18%), Positives = 113/318 (35%), Gaps = 22/318 (6%)
Query: 266 KAAQAQYQQEVRAHEETQKS-RMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKE 324
K + +K R + KE+ +E ++ L L+A+ ++ L + + L +
Sbjct: 177 KDLVKALDEAEEELANLRKELRQLEKEKQRLERLRRLLPLLAERKA-LEQQLAALGEVID 235
Query: 325 REVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDL 384
D + ++ + ++ + LL E E Q +L ++ + A L
Sbjct: 236 LPPDAVERYEEARAELRAARRNLELLTERLEALQAELDEISLDEELLAQAAAI----EAL 291
Query: 385 SVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQ----MKELQDQL 440
Q E + + E+A REA + + + +VE L+ KE +L
Sbjct: 292 HQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIGPDADEEAVESLRPSLAAKETVTEL 351
Query: 441 ET-----EQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALA 495
E +Q + + E + EL + + L R LA A + A
Sbjct: 352 EKRKEALDQALKSA-RDALEERERELKQVRAQLAALPTVTVPEPLRAALADALRAGDIDA 410
Query: 496 RSIAEETVGELEKEKTMKELE-----LKDLMAKHRSDLSSKESLLSNGKEREVDYKKSID 550
A E + K + + L DL + S E + + KE E + ++
Sbjct: 411 ALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALPVPSAEQVQAFLKEAE-EIMQAKR 469
Query: 551 QLMKDREDLQQQINLLKE 568
Q +L++ + L+
Sbjct: 470 QKRDRLLELEEDLETLEL 487
Score = 34.7 bits (80), Expect = 0.33
Identities = 55/285 (19%), Positives = 105/285 (36%), Gaps = 24/285 (8%)
Query: 35 EMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESETKKK 94
E+++L E RQL E+ E +AR+ +L + + E+ L E+Q + E
Sbjct: 660 ELAELLELARQLLEEAEKQAARKASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYD 719
Query: 95 AEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTL 154
A + + L+ +L A ++ +A +E +
Sbjct: 720 ALLEAGLGGRA-SPAGALDALEL-LQNIKEKLQAADDLRQR--------IAAMERDLARF 769
Query: 155 QQEVATLQAKISQERSSKTQAVNLHKELEGRLQAL---NTELERNKHRELQLAEDNR-HL 210
++EV L ++ E T A + L+ RL+ E+ E++ AE
Sbjct: 770 EEEVEALAEAVAPE-MLGTPADETARALKQRLKRARDTAAAAEKLA-EEIEEAEKEVSEA 827
Query: 211 GEKVSSLEKECR--LQALNTELERNKHRELQLAEDNRHLGEKVSSLEK----ECASLSLE 264
+ E L+A ++ ++ R L +++++LE+ LSLE
Sbjct: 828 AAALDEAEARLTALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGLSLE 887
Query: 265 LKAAQAQYQQ--EVRAHEETQKSRMVNKEEASVEIVKELKDLMAK 307
A+A E+ A E + EE E+ +E+ +
Sbjct: 888 ALVAEAAALDPDELPARLEELARDIEELEEELNELAQEVGAAKQE 932
Score = 34.4 bits (79), Expect = 0.50
Identities = 60/321 (18%), Positives = 104/321 (32%), Gaps = 16/321 (4%)
Query: 10 QVDNAIPNGGQANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEK 69
Q+ L + L R + + EER + EA + E G +
Sbjct: 670 QLLEEAEKQAARKASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGR 729
Query: 70 NLTILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVA 129
D + N E + A+ Q I+ M L E L + A +
Sbjct: 730 ASPAGALD---ALELLQNIKEKLQAADDLRQRIAAMERDLARFEEEVEALAEAVAPEMLG 786
Query: 130 KSAGEQMVVELQNILATLE---MERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRL 186
A E L+ L + L +E+ + ++S+ L L
Sbjct: 787 TPADE-TARALKQRLKRARDTAAAAEKLAEEIEEAEKEVSEA---AAALDEAEARLTALL 842
Query: 187 QALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELE--RNKHRELQLAEDN 244
+A ++ ++ R L +++++LE+ LE + L E
Sbjct: 843 RAARCTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGLSLEALVAEAAALDPDELP 902
Query: 245 RHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDL 304
L E +E E EL +QE+ A + S E ++ +L+DL
Sbjct: 903 ARLEELARDIE-ELEEELNELAQEVGAAKQEL-ARMDGG-STAAELEAERESLLAQLRDL 959
Query: 305 MAKHRSDLSSKESLLSNGKER 325
A+ +L+ LL ER
Sbjct: 960 -AERYLELALASRLLRKAIER 979
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 50.8 bits (122), Expect = 4e-06
Identities = 108/560 (19%), Positives = 219/560 (39%), Gaps = 84/560 (15%)
Query: 33 RREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESETK 92
R +S QL Q E ++ L + L L +L E + E +
Sbjct: 179 ERVLSDQRGSLDQLKAQIEEKEEKD---------LHERLNGLESELAELDEEIERYEEQR 229
Query: 93 KKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERD 152
++A E E ++ EL ++ E +L+ +A E ER+
Sbjct: 230 EQAR----------ETRDEADEVLEEHEERREELETLEAEIE----DLRETIAETERERE 275
Query: 153 TLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGE 212
L +EV L+ ++ ELE L E + + L +
Sbjct: 276 ELAEEVRDLRERLE--------------ELEEERDDLLAEAGLDDADAEAVEARREELED 321
Query: 213 KVSSLEK---ECRL--QALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKA 267
+ L ECR+ QA N E E + L E L E+ + LE E ++
Sbjct: 322 RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED 381
Query: 268 AQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREV 327
+ + +E+ E + R + + ++ + + + R +L +E E E
Sbjct: 382 RREE-IEELEEEIEELRERFGDAPVD-LGNAEDFLEELREERDELRERE------AELEA 433
Query: 328 DYKKSIDQLMKDREDLQQQINLLKEGA--ELRQELEKSKTLQSQVEQEQAKKFSLQSDLS 385
+ + +++ + LL+ G E Q +E S +++ +E+++ + L+++L
Sbjct: 434 TLRTARERVEEAEA-------LLEAGKCPECGQPVEGSPHVET-IEEDRERVEELEAELE 485
Query: 386 VQTSEAAHLKAREEQLSH------EVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQ 439
E ++ R E+ + L E + ++EE + + + + +EL+++
Sbjct: 486 DLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRER 545
Query: 440 LETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIA 499
+ + + A E +EE +E + EL + +L R++ ++ R + A + A
Sbjct: 546 AAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE-SLERIRTLLAAIADA 604
Query: 500 EETVGEL-EKEKTMKELE------LKDLMAKHRSDLSSKE-----SLLSNGKEREVDY-- 545
E+ + L EK + + EL L + + R +L ++ KER +Y
Sbjct: 605 EDEIERLREKREALAELNDERRERLAEKRERKR-ELEAEFDEARIEEAREDKERAEEYLE 663
Query: 546 --KKSIDQLMKDREDLQQQI 563
++ +D+L ++R+DLQ +I
Sbjct: 664 QVEEKLDELREERDDLQAEI 683
Score = 48.9 bits (117), Expect = 2e-05
Identities = 106/491 (21%), Positives = 188/491 (38%), Gaps = 68/491 (13%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQR 83
EL + + R + +LEE + L + A A+ +LE LR L+E +
Sbjct: 276 ELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335
Query: 84 RADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRK--QSAELTVAKSAGEQMVVE-- 139
A ++AE + D+ E+ + E A L + A V E +E
Sbjct: 336 AA---QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEE 392
Query: 140 -----------------LQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKE- 181
++ L L ERD L++ A L+A + R +A L +
Sbjct: 393 IEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAG 452
Query: 182 --------LEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKEC-RLQALNTELER 232
+EG E +R + E L + L E+V +E+ R + L E E
Sbjct: 453 KCPECGQPVEGSPHVETIEEDRERVEE--LEAELEDLEEEVEEVEERLERAEDL-VEAED 509
Query: 233 NKHRELQLAED-NRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKE 291
R + ED + E+ ++E++ EL+ A+ + E E E
Sbjct: 510 RIERLEERREDLEELIAERRETIEEKRERAE-ELRERAAELEAEAEEKREAAAEAEEEAE 568
Query: 292 EASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINL-- 349
EA E V EL +A+ + + S E + + D + I++L + RE L + +
Sbjct: 569 EAREE-VAELNSKLAELKERIESLERIRTLLAAIA-DAEDEIERLREKREALAELNDERR 626
Query: 350 --LKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAM 407
L E E ++ELE ++ ++++E+ + K + L + L+ + L E+
Sbjct: 627 ERLAEKRERKRELE-AEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGA 685
Query: 408 LREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLE-TEQYFSTLYKTQAHELKE-----EL 461
+ +EE ++E ++ LE + LY +A EL+
Sbjct: 686 VENELEELEE---------------LRERREALENRVEALEALYD-EAEELESMYGDLRA 729
Query: 462 DERSRNILELE 472
+ R RN+ LE
Sbjct: 730 ELRQRNVETLE 740
Score = 38.5 bits (90), Expect = 0.027
Identities = 65/287 (22%), Positives = 118/287 (41%), Gaps = 44/287 (15%)
Query: 316 ESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLK-EGAELRQELEKSKTLQSQVEQEQ 374
E +LS+ + K I++ K+ +DL +++N L+ E AEL +E+E+ + Q EQ +
Sbjct: 179 ERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIER---YEEQREQAR 233
Query: 375 AKKFSLQSDLS--------VQTSEAAHLKARE---------EQLSHEVAMLREAKRNIEE 417
+ L ++T EA RE E+L+ EV LRE +EE
Sbjct: 234 ETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEE 293
Query: 418 EYHKLKTKRSVEDL--------------QMKELQDQLETEQYFSTLYKTQAHELKEELDE 463
E L + ++D + +EL+D+LE + + + +A L+E+ D+
Sbjct: 294 ERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADD 353
Query: 464 RSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKEKTMKELELKDLMAK 523
EL EE +L L+ A + EE + EL + ++L +
Sbjct: 354 LEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF 413
Query: 524 HRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGK 570
++ L E E + + +++ + LL+ GK
Sbjct: 414 LEELREERDELREREAELEATLRTARERVEEAEA-------LLEAGK 453
Score = 36.9 bits (86), Expect = 0.067
Identities = 82/401 (20%), Positives = 151/401 (37%), Gaps = 52/401 (12%)
Query: 12 DNAIPNGGQANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNL 71
++ + +A + ++ +E E+ +L ER LR+E +L +
Sbjct: 369 ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE 428
Query: 72 TILRHDLKESQ-RRADNES--ETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTV 128
L L+ ++ R + E+ E K E V H ET R++ EL
Sbjct: 429 AELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPH------VETIEEDRERVEELEA 482
Query: 129 AKSAGEQMVVELQN------ILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKEL 182
E+ V E++ L E + L++ L+ I++ R + + +EL
Sbjct: 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEEL 542
Query: 183 EGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELER-NKHRELQLA 241
R L E E + + E+ E+V+ L +L L +E + R L A
Sbjct: 543 RERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS--KLAELKERIESLERIRTLLAA 600
Query: 242 EDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKEL 301
+ +++ L E + A A+ E R ++ R E E
Sbjct: 601 IAD--AEDEIERLR--------EKREALAELNDERRERLAEKRERKRELEAEFDE----- 645
Query: 302 KDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQI----NLLKEGAELR 357
+ + R D E L +E+ +D+L ++R+DLQ +I N L+E ELR
Sbjct: 646 -ARIEEAREDKERAEEYLEQVEEK-------LDELREERDDLQAEIGAVENELEELEELR 697
Query: 358 QEL-------EKSKTLQSQVEQEQAKKFSLQSDLSVQTSEA 391
+ E + L + E+ ++ L+++L + E
Sbjct: 698 ERREALENRVEALEALYDEAEELESMYGDLRAELRQRNVET 738
>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Colony-Stimulating Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Colony-Stimulating
Factor-1 Receptor (CSF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CSF-1R,
also called c-Fms, is a member of the Platelet Derived
Growth Factor Receptor (PDGFR) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
CSF-1R to its ligand, CSF-1, leads to receptor
dimerization, trans phosphorylation and activation, and
intracellular signaling. CSF-1R signaling is critical in
the regulation of macrophages and osteoclasts. It leads
to increases in gene transcription and protein
translation, and induces cytoskeletal remodeling. CSF-1R
signaling leads to a variety of cellular responses
including survival, proliferation, and differentiation
of target cells. It plays an important role in innate
immunity, tissue development and function, and the
pathogenesis of some diseases including atherosclerosis
and cancer. CSF-1R signaling is also implicated in
mammary gland development during pregnancy and
lactation. Aberrant CSF-1/CSF-1R expression correlates
with tumor cell invasiveness, poor clinical prognosis,
and bone metastasis in breast cancer. Although the
structure of the human CSF-1R catalytic domain is known,
it is excluded from this specific alignment model
because it contains a deletion in its sequence.
Length = 374
Score = 49.8 bits (119), Expect = 5e-06
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 667 FQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARS-LSDSKECL--TEYIAT 723
Q+ G+ ++ + +HRD+ N+L+ KI D GLAR ++DS + +
Sbjct: 219 SQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPV 278
Query: 724 RWYRAPEILISNRRYTHHVDIWSLGCILAEMLQ-SKPLFPG 763
+W APE I + YT D+WS G +L E+ K +PG
Sbjct: 279 KWM-APES-IFDCVYTVQSDVWSYGILLWEIFSLGKSPYPG 317
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 50.6 bits (121), Expect = 5e-06
Identities = 103/450 (22%), Positives = 176/450 (39%), Gaps = 73/450 (16%)
Query: 114 ETATRLRKQSAELTVAKSAGE---QMVVELQNILATLEMERDTLQQEVATLQAKISQERS 170
+L+K +L A+ + Q EL + L+ E+++LQQE LQ +++Q
Sbjct: 169 NLDQQLKKALEDLKEAQEEKDELAQRCHELDKQVLLLQEEKNSLQQENEKLQERLAQLEG 228
Query: 171 SKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKEC-RLQALNTE 229
S L + + L ++LE+ + +L K LEKE LQ N E
Sbjct: 229 SSLGPNQLGSK---KYNLLQSQLEQLQEENFRLEAARDDYRIKCEELEKELAELQHRNDE 285
Query: 230 LERNKHRELQLAEDN---RHLGEKVSSLEKECAS----------LSLELKAAQ---AQYQ 273
L L ++ R +K LE + + L ++K + A Y
Sbjct: 286 LTSLAAESQALKDEIDVLRESSDKAKKLEAQVETYKKKLEDLNDLRRQVKLLEERNAMYM 345
Query: 274 QEVRAHEETQKSRMVNKEEASVEIVK-ELKDLMAKHRSDLSSKESLLSNGKEREVDYKKS 332
Q EE + + N +E K ++++L AK + + L K E
Sbjct: 346 QNTVQLEE--ELKKANAARGQLETYKRQVQELHAKLSEESKKADKLEFEYKRLEEKL--- 400
Query: 333 IDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEA- 391
+ L K++E LL E LR+ E+ + Q +Q+Q + + S A
Sbjct: 401 -EALQKEKE------RLLAERDSLRETNEELRC--GQAQQDQLTQADAGTSPSGDNLAAE 451
Query: 392 ---AHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFST 448
+ + + +L HE MLR + E ++ T ELQ LE
Sbjct: 452 LLPSEYREKLIRLQHENKMLRLGQ---EGSENERIT----------ELQQLLE------- 491
Query: 449 LYKTQAHELKEELDERSR----NILELEEERGDLTHRLQLAVARADSEALARSIAE---E 501
A+ EL+ + R ILEL+++ DL LQ ++++ +L +S E E
Sbjct: 492 ----DANRRNNELETQLRLANQRILELQQQVEDLQKALQEQGSKSEDSSLLKSKLEEHLE 547
Query: 502 TVGELEKEKTMKELELKDLMAKHRSDLSSK 531
+ E +E K ++++L +LS K
Sbjct: 548 QLHEANEELQKKREQIEELEPDQDQNLSRK 577
>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR2 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. In
addition, NDR2 plays a role in regulating neuronal
growth and differentiation, as well as in facilitating
neurite outgrowth. It is also implicated in fear
conditioning as it contributes to the coupling of
neuronal morphological changes with fear-memory
consolidation. NDR2 is also referred to as STK38-like.
Length = 360
Score = 49.6 bits (118), Expect = 5e-06
Identities = 52/247 (21%), Positives = 97/247 (39%), Gaps = 46/247 (18%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEA---FRNKTDAQRTYREILFLKSFQRHPNIITM 625
G+GA+G V K+ A+K + +A + + R R+IL ++ M
Sbjct: 10 GRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEAD---GAWVVKM 66
Query: 626 LDIYKAVNNKDLYVVFEYMEND--LNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMH 683
Y + ++LY++ E++ + +++ L + ++ + + + IH +H
Sbjct: 67 F--YSFQDKRNLYLIMEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIH 124
Query: 684 RDLKPSNILIDKSCSIKIGDLGLARSL--------------------------------- 710
RD+KP N+L+D +K+ D GL L
Sbjct: 125 RDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAET 184
Query: 711 --SDSKECLTEYIATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSH 768
+ ++ + T Y APE+ + Y D WSLG I+ EML P F +
Sbjct: 185 WKKNRRQLAYSTVGTPDYIAPEVFMQT-GYNKLCDWWSLGVIMYEMLIGYPPFCSETPQE 243
Query: 769 QLQLIVN 775
+ ++N
Sbjct: 244 TYRKVMN 250
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 49.9 bits (119), Expect = 8e-06
Identities = 93/490 (18%), Positives = 195/490 (39%), Gaps = 33/490 (6%)
Query: 20 QANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLK 79
Q EL +R +LE + L+E YE R L + LE+ ++
Sbjct: 72 QLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENEAA 131
Query: 80 ESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVE 139
E++ A + K +L++ ++ ++LK E+ +R++ +E+ + +
Sbjct: 132 EAEEEA--KLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCRAQNADTELKL 189
Query: 140 LQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVN---LHKELEGRLQALNTELERN 196
L++ L L + + Q+E+A + K+ S + + + K LE L+ + E
Sbjct: 190 LESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEELKRYEQDAEVV 249
Query: 197 KHRELQLAEDNRHLGEKVSSLEKEC-RLQALNTELERNKHRELQLAEDNRHLGEKVSSLE 255
K + QL ++ LE+E L+ N +L K L E+ L ++ E
Sbjct: 250 KSMKEQLL--------QIPELERELAALREENRKLRSMKEDNELLKEELEDLQSRLERFE 301
Query: 256 KECASL-SLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSS 314
K L LEL+ + + + + + + + L++ + + S
Sbjct: 302 KMREKLADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGS 361
Query: 315 KESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAE----LRQELEKSKTLQSQ- 369
S + ++ QL +R+ +I LK+ E L + L++ TL ++
Sbjct: 362 ISSSAKQ-------LETTLQQLQLERQKAVSEILELKKKLEALKALVRRLQRRLTLVTKE 414
Query: 370 VEQEQAKKFSLQSDLSVQTSEAAHLKAREE-----QLSHEVAMLREAK-RNIEEEYHKLK 423
+ +A S +L+ + +K EE Q E + +EE+ + K
Sbjct: 415 RDGLRAILNSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHLAKMENQLSELEEDVGQQK 474
Query: 424 TKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQ 483
+ + + ++K L++QL + + + K + L+ +++ R L +E+ L +L+
Sbjct: 475 DRNNTLETEIKLLKEQLVSNERLLSFVKEATNALRLKIETLERERDRLRQEKSLLEMKLE 534
Query: 484 LAVARADSEA 493
+ D A
Sbjct: 535 HLCLQGDYNA 544
Score = 45.3 bits (107), Expect = 2e-04
Identities = 70/360 (19%), Positives = 136/360 (37%), Gaps = 16/360 (4%)
Query: 232 RNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQ---YQQEVRAHEETQKSRMV 288
+K +++L L E L + LKA + + E EE K
Sbjct: 83 EHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENEAAEAEEEAKLLKD 142
Query: 289 NKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQIN 348
+ S+++ E +D + + + +S ++ LS + R + + L + E+L++Q+
Sbjct: 143 KLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCRAQNADTELKLLESELEELREQLE 202
Query: 349 -LLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAM 407
KE AE ++L+ + Q+ K L+ +L +A +K+ +EQL +
Sbjct: 203 ECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEELKRYEQDAEVVKSMKEQLLQIPEL 262
Query: 408 LREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRN 467
RE EE K E L+ + Q E++ K EL++E E
Sbjct: 263 ERELAALREENRKLRSMKEDNELLKEELEDLQSRLERFEKMREKLADLELEKEKLENELK 322
Query: 468 ILELEEERGDLTHRLQLAVARADSEALARSI-AEETVGELEKEKTMKELELKDLMAKHRS 526
+ + L R ++R + +E G + E L+ L + +
Sbjct: 323 SWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSISSSAKQLETTLQQLQLERQK 382
Query: 527 DLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGKGAYGIVYKAYDKNNKQ 586
+S L KK ++ L LQ+++ L+ + + + +YDK +
Sbjct: 383 AVSEILEL-----------KKKLEALKALVRRLQRRLTLVTKERDGLRAILNSYDKELTE 431
Score = 41.1 bits (96), Expect = 0.004
Identities = 93/478 (19%), Positives = 184/478 (38%), Gaps = 40/478 (8%)
Query: 122 QSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKE 181
Q AEL +KS Q+ EL + + L+++ +TL +E + K
Sbjct: 59 QRAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKA 118
Query: 182 LEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLA 241
LE + E + E +L +D EKE +L+ + R K+ ++
Sbjct: 119 LEELEKKAENEAAEAEE-EAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQ 177
Query: 242 EDNRHLGEKVSSLEKECASLSLELKAAQAQYQQ--------EVRAHEETQKSRMVNKEEA 293
++ ++ LE E L +L+ Q + + S + E
Sbjct: 178 CRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEE 237
Query: 294 SVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEG 353
++ ++ +++ + L L + + + + +D E L++++ L+
Sbjct: 238 ELKRYEQDAEVVKSMKEQLLQIPELERE-LAALREENRKLRSMKEDNELLKEELEDLQSR 296
Query: 354 AELRQELEKSKTLQSQVEQEQAKK-----FSLQSDLSVQTSEAAHLKAREEQLSHEVAML 408
E R E + K ++E+E+ + SL D+ + L R L +E L
Sbjct: 297 LE-RFEKMREKLADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQL 355
Query: 409 REAK-------RNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEEL 461
+E + +E +L+ +R ++ EL+ +LE + + + + +E
Sbjct: 356 KEKNGSISSSAKQLETTLQQLQLERQKAVSEILELKKKLEALKALVRRLQRRLTLVTKER 415
Query: 462 DERSRNILELEEERGDLTHRLQLAVARADSEALAR-------------SIAEETVGELEK 508
D + ++E + + QL ++E L + S EE VG+ +
Sbjct: 416 DGLRAILNSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHLAKMENQLSELEEDVGQQKD 475
Query: 509 EKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLL 566
E E+K L + L S E LLS KE + I+ L ++R+ L+Q+ +LL
Sbjct: 476 RNNTLETEIKLL----KEQLVSNERLLSFVKEATNALRLKIETLERERDRLRQEKSLL 529
Score = 30.3 bits (68), Expect = 7.7
Identities = 33/159 (20%), Positives = 70/159 (44%), Gaps = 16/159 (10%)
Query: 959 REDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCK 1018
+ +L+++ + L E + + + E L +LK + L+ +A N+ AE
Sbjct: 88 QIELERKASTLAENYERELDRNLE---LEVRLKALEELEKKAENEAAEAEEEAK------ 138
Query: 1019 GKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQ 1078
K + E KLQ E + ++ + + + + +L E+Q + +T L+
Sbjct: 139 -------LLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCRAQNADTELKLLE 191
Query: 1079 MELDSKDSEIEQLQGKLAALGSETASLSSADVENDESYV 1117
EL+ ++E+ Q +LA + SL+S + ++ V
Sbjct: 192 SELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSV 230
>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 49.0 bits (117), Expect = 1e-05
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 46/179 (25%)
Query: 567 KEGKGAYGIVYKAY---DKNNKQ--YVAIKKI-----FEAFRNKTDAQRTYREIL--FLK 614
K G+GA+G+VYKA ++ K+ YV +KK E + N+ +R F+
Sbjct: 139 KLGEGAFGVVYKASLVNKQSKKEGKYV-LKKATEYGAVEIWMNER-VRRACPNSCADFVY 196
Query: 615 SFQRHPNIITMLDIYKAVNNKDLYVVFEYMEND-LNKVIRDK---------ILKDVH--- 661
F L+ + + ++V+ Y L +++ K +L V
Sbjct: 197 GF---------LEPVSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLP 247
Query: 662 ---------IRYIMFQLCNGLSYIHACKVMHRDLKPSNILID-KSCSIKIGDLGLARSL 710
I+ IM Q+ L +H+ ++HRD+KP NI+ S S KI DLG A L
Sbjct: 248 KGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADL 306
>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine
Kinases, Apoptosis-associated tyrosine kinases. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase (Aatyk) subfamily; catalytic (c) domain.
The Aatyk subfamily is also referred to as the lemur
tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1
(Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Aatyk proteins are mostly receptor tyr kinases (RTKs)
containing a transmembrane segment and a long C-terminal
cytoplasmic tail with a catalytic domain. Aatyk1 does
not contain a transmembrane segment and is a cytoplasmic
(or nonreceptor) kinase. Aatyk proteins are classified
as tyr kinases based on overall sequence similarity and
the phylogenetic tree. However, analysis of catalytic
residues suggests that Aatyk proteins may be
multispecific kinases, functioning also as
serine/threonine kinases. They are involved in neural
differentiation, nerve growth factor (NGF) signaling,
apoptosis, and spermatogenesis.
Length = 269
Score = 47.2 bits (112), Expect = 2e-05
Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 49/255 (19%)
Query: 569 GKGAYGIVY--KAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQ-----RHPN 621
G G +G V +A+ +K V +K++ + ++LFL+ Q HPN
Sbjct: 4 GNGWFGKVLLGEAHRGMSKARVVVKEL-------RASATPDEQLLFLQEVQPYRELNHPN 56
Query: 622 IITMLDIYKAVNNKDLYVVFEYME-NDLNKVIRDKIL-------KDVHIRYIMFQLCNGL 673
++ L + + + +V E+ DL +R KDV R + ++ +GL
Sbjct: 57 VLQCLG--QCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQR-MACEVASGL 113
Query: 674 SYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARS-----LSDSKECLTEYIATRWYRA 728
++H +H DL N + S+KIGD GLA +K+C + RW A
Sbjct: 114 LWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCH--AVPLRWL-A 170
Query: 729 PEIL------ISNRRYTHHVDIWSLGCILAEM--LQSKPLFPGASTSHQLQLIV-----N 775
PE++ + + T +IWSLG + E+ +P +P S L+ +V
Sbjct: 171 PELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQP-YPDLSDEQVLKQVVREQDIK 229
Query: 776 LVRPN--PPHADKFY 788
L +P ++D++Y
Sbjct: 230 LPKPQLDLKYSDRWY 244
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 45.4 bits (108), Expect = 4e-05
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 144 LATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRE--- 200
L L+ E LQ+E+A LQ ++++ + + LE L+ L EL R K
Sbjct: 68 LPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANA 127
Query: 201 LQLAEDNRHLGEKVSSLEKECR-LQALNTELERNKHRE 237
++L E+NR L E+++ L++E L+A N L+ N+ R
Sbjct: 128 IELDEENRELREELAELKQENEALEAENERLQENEQRR 165
Score = 38.8 bits (91), Expect = 0.008
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 180 KELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRE-- 237
EL+ L L EL + + +L ++N+ L +++S+LE E L+ L EL R K
Sbjct: 69 PELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAE--LERLQKELARIKQLSAN 126
Query: 238 -LQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQE 275
++L E+NR L E+++ L++E +L E + Q Q+
Sbjct: 127 AIELDEENRELREELAELKQENEALEAENERLQENEQRR 165
Score = 36.1 bits (84), Expect = 0.056
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 341 EDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQ 400
+LQQ++ AEL++EL + + ++++QE + S L + AR +Q
Sbjct: 69 PELQQEL------AELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQ 122
Query: 401 LSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFS 447
LS L E R + EE +LK + + + + LQ+ + +
Sbjct: 123 LSANAIELDEENRELREELAELKQENEALEAENERLQENEQRRWFLY 169
Score = 34.2 bits (79), Expect = 0.25
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 56 RETALRDEMGQLEKNLTILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAET 115
+ R+ + +L++ L L+ +L E Q + + ++ + L + E+L+ E
Sbjct: 60 DTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELAR 119
Query: 116 ATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQAKISQE 168
+L + EL ++ EL+ LA L+ E + L+ E LQ +
Sbjct: 120 IKQLSANAIEL-------DEENRELREELAELKQENEALEAENERLQENEQRR 165
Score = 33.8 bits (78), Expect = 0.35
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 25 LKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRR 84
++ L ++E+++L+E +L EQ + L+ E+ LE L L+ +L ++
Sbjct: 64 ARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQL 123
Query: 85 ADNESETKKKAEVNLQVISDMHEKLKTEAETATR 118
+ N E ++ + + + +LK E E
Sbjct: 124 SANAIELDEE----NRELREELAELKQENEALEA 153
Score = 31.5 bits (72), Expect = 1.8
Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 351 KEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLRE 410
+EG L + L + + + ++ + Q + LQ +L+ + A L+ ++L E++ L
Sbjct: 49 REGWVLSRYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEA 108
Query: 411 AKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILE 470
+++E ++K + S +++ E +L E ELK+E +
Sbjct: 109 ELERLQKELARIK-QLSANAIELDEENRELREEL----------AELKQENEALEAENER 157
Query: 471 LEEE 474
L+E
Sbjct: 158 LQEN 161
Score = 30.4 bits (69), Expect = 4.3
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1020 KSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQ---SQVVEENTSKLK 1076
+ + A+++++ E ++ QEL QE + + QKEL ++ + +E + +
Sbjct: 77 ELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENRE 136
Query: 1077 LQMELDSKDSEIEQLQGKLAAL 1098
L+ EL E E L+ + L
Sbjct: 137 LREELAELKQENEALEAENERL 158
Score = 29.6 bits (67), Expect = 6.8
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 384 LSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETE 443
LS S+ + R +L E+A L+E ++E+ +L+ + ++ L+ +LE
Sbjct: 54 LSRYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERL 113
Query: 444 QYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRL-----QLAVARADSEALARSI 498
Q + + + S N +EL+EE +L L + A++E L +
Sbjct: 114 Q-----------KELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENE 162
Score = 29.6 bits (67), Expect = 7.7
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 960 EDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKG 1019
+LQQ++ L+EEL + E+++ +++LKQE + +L + + R
Sbjct: 69 PELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIK------- 121
Query: 1020 KSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQ 1061
+ A++ ++ ++ +E R+ EL QE E + Q+ Q
Sbjct: 122 QLSANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163
Score = 29.6 bits (67), Expect = 7.9
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 107 EKLKTEAETAT----RLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQ 162
+L+ E L++Q AEL +Q + L+ L L+ E ++Q A
Sbjct: 69 PELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAI 128
Query: 163 AKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRE 200
+ R + + L +E E L+A N L+ N+ R
Sbjct: 129 ELDEENRELREELAELKQENE-ALEAENERLQENEQRR 165
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 47.3 bits (112), Expect = 5e-05
Identities = 46/258 (17%), Positives = 101/258 (39%), Gaps = 11/258 (4%)
Query: 35 EMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESETKKK 94
++ + + R L + + A E L R + + ++ + K
Sbjct: 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAK 134
Query: 95 AEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTL 154
A+ L ++ + L+T +T L +Q +L + + +LQ L+ + L
Sbjct: 135 AQQELARLTKQAQDLQTRLKT---LAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL 191
Query: 155 --QQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGE 212
+ +A+ R++ QA +EL R A + + R+ Q+++ + +
Sbjct: 192 KLRSAQIEQEAQNLATRANAAQA--RTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAA 249
Query: 213 KVSSL-EKECRLQALNTELERNKHRELQL---AEDNRHLGEKVSSLEKECASLSLELKAA 268
+ + E+E +LQ L T R + QL + L ++ ++ ++ + A
Sbjct: 250 RAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVA 309
Query: 269 QAQYQQEVRAHEETQKSR 286
QAQ Q + +A + +R
Sbjct: 310 QAQAQAQAQAQLLSSANR 327
Score = 44.2 bits (104), Expect = 4e-04
Identities = 30/149 (20%), Positives = 64/149 (42%)
Query: 30 ERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNES 89
+ + + L E++RQL Q +++ A + L+ QL+ + L+ + ++ A N +
Sbjct: 147 QDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLA 206
Query: 90 ETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEM 149
A+ + ++ + A+ + Q ++ +A + + E + L LE
Sbjct: 207 TRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLET 266
Query: 150 ERDTLQQEVATLQAKISQERSSKTQAVNL 178
+ L+QEVA L+A + QA
Sbjct: 267 AQARLEQEVAQLEAYYQAYVRLRQQAAAT 295
Score = 42.7 bits (100), Expect = 0.001
Identities = 51/235 (21%), Positives = 87/235 (37%), Gaps = 24/235 (10%)
Query: 9 FQVDNAIPNGGQANGELKDLLERERREMSQLEERQRQLS---EQYEAVSARETALRDEMG 65
FQ+D+ P EL +R ++ E + +L ++ EAV A R +
Sbjct: 74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLA 133
Query: 66 QLEKNLTILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAE 125
+ ++ L L ++ Q R +E +++ E Q + ++L+ +AT+L+ Q +
Sbjct: 134 KAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQA---SATQLKSQVLD 190
Query: 126 LTVAKSAGEQMVVELQNI----------LATLEMERDTLQQEVATLQAKISQERSSKTQA 175
L + + EQ L LA Q + A+ISQ+
Sbjct: 191 LKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAAR 250
Query: 176 VNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTEL 230
+E E +LQ L T R + QL E R QA T+
Sbjct: 251 AEQIRERERQLQRLETAQARLEQEVAQL--------EAYYQAYVRLRQQAAATQR 297
Score = 39.6 bits (92), Expect = 0.009
Identities = 37/225 (16%), Positives = 90/225 (40%), Gaps = 19/225 (8%)
Query: 292 EASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQ------ 345
V +L D+ + R+ + + + E + + + +L K R++ +
Sbjct: 67 RNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELA 126
Query: 346 --QINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSH 403
+ NL K EL + ++++ LQ++++ ++ L++ + L+A QL
Sbjct: 127 AARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKS 186
Query: 404 EVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDE 463
+V L+ IE+E L T+ + + +EL + A + + + +
Sbjct: 187 QVLDLKLRSAQIEQEAQNLATRANAAQARTEELARR-----------AAAAQQTAQAIQQ 235
Query: 464 RSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEK 508
R I + ++ +++ + A++ E+ V +LE
Sbjct: 236 RDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280
Score = 34.6 bits (79), Expect = 0.34
Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 17/159 (10%)
Query: 911 KQNTDPELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDL---QQQIN 967
KQ D + LK L + R + +SL ++ K+ + S QL DL QI
Sbjct: 144 KQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQ----LQASATQLKSQVLDLKLRSAQIE 199
Query: 968 LLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSAD 1027
+ L +N+++ + + AQA+ + +++K A +
Sbjct: 200 QEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIA------ARAEQ 253
Query: 1028 VRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQ 1066
+R++E++ Q L + + Q V + + Q
Sbjct: 254 IRERERQL----QRLETAQARLEQEVAQLEAYYQAYVRL 288
Score = 34.6 bits (79), Expect = 0.35
Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 12/155 (7%)
Query: 960 EDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKG 1019
+D++ Q+ L+ EL + E + + E L KA+ + R+++ +
Sbjct: 77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSE-LQKARQEREAV----RQELAAARQN 131
Query: 1020 KSKASSADVRKKEKECRKLQQELTQ---EREKFN---QVVVKCQKELQELQSQVVEENTS 1073
+KA ++ + K+ + LQ L +R + Q + QK+LQ +Q+ +
Sbjct: 132 LAKAQQ-ELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLD 190
Query: 1074 KLKLQMELDSKDSEIEQLQGKLAALGSETASLSSA 1108
+++ + + A E A ++A
Sbjct: 191 LKLRSAQIEQEAQNLATRANAAQARTEELARRAAA 225
Score = 33.5 bits (76), Expect = 0.71
Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 982 EMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQE 1041
+++ + QL+ + A + T + +++ R++ + R+
Sbjct: 75 QLDDIRPQLRALRTELGTAQGEKRAA-------ETEREAARSELQKARQEREAVRQELAA 127
Query: 1042 LTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSE 1101
Q K Q + + K+ Q+LQ+++ + +L+ + S + +QLQ L S+
Sbjct: 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQ 187
Query: 1102 TASLS 1106
L
Sbjct: 188 VLDLK 192
Score = 30.0 bits (67), Expect = 9.9
Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 26/199 (13%)
Query: 796 EREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETAS 855
ERE + K ++E + ++ ++ + K Q EL + + LQ +L L +
Sbjct: 103 EREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQ 162
Query: 856 LSSADVENDESYVQDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDKQNTD 915
L + + +L+ + Q + + S +I E + QN
Sbjct: 163 LEA---QAQSLQASQKQLQASATQLKSQ--------VLDLKLRSAQI-----EQEAQN-- 204
Query: 916 PELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRK 975
+A + ++ L+ ++I Q QQI E++R+
Sbjct: 205 --------LATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRE 256
Query: 976 SSNSSEEMEKLHKQLKQEQ 994
+ +E +L+QE
Sbjct: 257 RERQLQRLETAQARLEQEV 275
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 47.3 bits (112), Expect = 5e-05
Identities = 81/500 (16%), Positives = 194/500 (38%), Gaps = 74/500 (14%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQ------LEKNLTILRHD 77
+ +D L + +E++ LE+ + ++ + E+ + ++ D++ E +L L+ +
Sbjct: 588 QTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEE 647
Query: 78 LKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMV 137
+++S + + V Q I+ + ++ ++ R+ + AEL S + +
Sbjct: 648 IEKSSK---QRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKL 704
Query: 138 VELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNK 197
+ L + E E ++ + +S EL +LQ +N +++R K
Sbjct: 705 RLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLK 764
Query: 198 HR-------------------------------ELQLAEDNRHLGEKVSSL--------- 217
+ +++L + R + ++ + L
Sbjct: 765 NDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTV 824
Query: 218 --------EKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQ 269
EK+ L + +++E N+ E +HL K + L+ E + L+ Q
Sbjct: 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQ 884
Query: 270 AQYQQEVRAHEETQK--SRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREV 327
+Q V E Q + + +E + L+ + +SSKE+ +++
Sbjct: 885 QFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVN 944
Query: 328 DYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQ 387
D K+ + + +D++ +I K+ ++E E + T+ +Q+E+ + + + D+ +
Sbjct: 945 DIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELN-TVNAQLEECEKHQEKINEDMRLM 1003
Query: 388 TSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFS 447
+ K +E L + + R E E +++ + +M ++Q
Sbjct: 1004 RQDIDTQKIQERWLQDNLTL-----RKRENELKEVEEELKQHLKEMGQMQ---------V 1049
Query: 448 TLYKTQAHELKEELDERSRN 467
K + +L+E +D RN
Sbjct: 1050 LQMKQEHQKLEENIDLIKRN 1069
Score = 43.1 bits (101), Expect = 0.001
Identities = 96/576 (16%), Positives = 216/576 (37%), Gaps = 79/576 (13%)
Query: 37 SQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQ-------------- 82
S+ +Q Q E + + + LEK L+ +KE Q
Sbjct: 419 SKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQ 478
Query: 83 --RRADNE---------SETKKKAEVNLQVI-SDMHEKLKTEAETATRLRKQSAELTVAK 130
R+A+ E +ET KK +LQ +D+ KL+ + +L + T +
Sbjct: 479 ELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQME 538
Query: 131 SAGEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALN 190
+ + + + I D L + K E +++ + RL LN
Sbjct: 539 MLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKS-KEINQTRDRLAKLN 597
Query: 191 TELERNKHRELQLAEDNRHLGEKVSSLEKE----CRLQALNTELERNKHRELQLAEDNRH 246
EL + + + + E++SS E + C Q ++LER K + ++
Sbjct: 598 KELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAM 657
Query: 247 LGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMA 306
L + + L+ E ++ Q+ + E Q E + +L+ +
Sbjct: 658 LAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQ------------EFISDLQSKLR 705
Query: 307 KHRSDLSSKESLLSNGKEREVD--------YKKSIDQLMKDREDLQQQI-NLLKEGAELR 357
L S ES L KE+ D + ID K+ +L+ ++ + ++ L+
Sbjct: 706 LAPDKLKSTESELKK-KEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLK 764
Query: 358 QELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEE 417
++E+ +TL + E+ +D+++ LK E +++ + A
Sbjct: 765 NDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAA----------- 813
Query: 418 EYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGD 477
K + S D ++++ + + +Q+ ++ ++ + ++ I L+ + +
Sbjct: 814 -----KLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE 868
Query: 478 L-THRLQLAVARADSEALARSIAEET---------VGELEKEKTMKELELKDLMAKHRSD 527
L + +LQ+ + + E + + + +++ + E L+ +
Sbjct: 869 LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928
Query: 528 LSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQI 563
+SSKE+ +++ D K+ + + +D++ +I
Sbjct: 929 ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKI 964
Score = 33.9 bits (77), Expect = 0.68
Identities = 30/158 (18%), Positives = 70/158 (44%), Gaps = 12/158 (7%)
Query: 942 KEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKL-HKQLKQEQLLKAQA 1000
K + D +++ Q+ +++++ Q EL + E KL Q +Q Q LK+
Sbjct: 814 KLQGSDLDRTVQQVNQEKQEKQ-------HELDTVVSKIELNRKLIQDQQEQIQHLKS-- 864
Query: 1001 VNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKEL 1060
K E+ + K T + + + + E + L +E+ +E+ + + +K+
Sbjct: 865 --KTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQ 922
Query: 1061 QELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAAL 1098
QE + + + TS K Q +++ +++ + G + +
Sbjct: 923 QEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDI 960
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 47.3 bits (113), Expect = 5e-05
Identities = 87/426 (20%), Positives = 164/426 (38%), Gaps = 60/426 (14%)
Query: 26 KDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRA 85
+ L RE+++L E + L + Y+A S ++ + Q EK + + DL+E + R
Sbjct: 306 QYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEK-IERYQADLEELEERL 364
Query: 86 DNESETKKKAEVNLQVISDMHEKLKTEAET-ATRLRKQSAELTVAKSAGEQMVVELQNIL 144
+ ++E ++A + +E AE L+ Q A+ A + ++ Q +
Sbjct: 365 EEQNEVVEEA----DEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAV 420
Query: 145 ATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLA 204
LE + + L A A + +E + + Q EL + + L +A
Sbjct: 421 QALERAKQLCG--LPDLTAD---------NAEDWLEEFQAKEQEATEELLSLEQK-LSVA 468
Query: 205 EDNRHLGEKVSSLEKECRLQALNTELERN----KHRELQL-AEDNRHLGEKVSSLEKECA 259
+ E+ L ++ + E+ R+ REL + RHL E++ L +
Sbjct: 469 QAAHSQFEQAYQL-----VRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLS 523
Query: 260 SLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLL 319
LE + Q Q + + A + + ++ E+ EL+ L + + L S +
Sbjct: 524 --ELEQRLRQQQRAERLLAEFCKRLGKNLDDED-------ELEQLQEELEARLESLSESV 574
Query: 320 SNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFS 379
S +ER R L+QQ L++ Q L Q+ +
Sbjct: 575 SEARER--------------RMALRQQ---LEQLQARIQRLAARAP-AWLAAQDALARLR 616
Query: 380 LQSDLSVQTSEA-----AHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMK 434
QS + S+ L RE +L+ E L K+ ++EE +L ED ++
Sbjct: 617 EQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLN 676
Query: 435 ELQDQL 440
L ++
Sbjct: 677 ALAERF 682
Score = 40.7 bits (96), Expect = 0.005
Identities = 53/325 (16%), Positives = 113/325 (34%), Gaps = 55/325 (16%)
Query: 142 NILATLEMERDTLQQEVATLQAKIS-QER--SSKTQAVNLH-------------KELEGR 185
+ L ER+ L + ATL + +R + ++ + H ++L R
Sbjct: 786 KRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRR 845
Query: 186 LQALNTELERNKHRELQLAEDNRHLGEKVSSLEK---------ECRLQALNTELERNKHR 236
L L ++ +E Q E +S+L + + L E+
Sbjct: 846 RVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDE 905
Query: 237 ELQLAEDNRHLGEKVSSLEKECASLS-------------LELKAAQAQYQQEVRAHEETQ 283
+ + G ++ LE + L + + Q +Q+ A E
Sbjct: 906 AEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVV 965
Query: 284 KSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDL 343
+ R E + E++ + DL K R L E + +E+ + + Q + L
Sbjct: 966 QRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASL 1025
Query: 344 QQQINLLKEG-AELRQELEK----------------SKTLQSQVEQEQAKKFSLQSDLSV 386
+ + ++ EL+QEL+ L +++ ++++ L+ L+
Sbjct: 1026 KSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTF 1085
Query: 387 QTSEAAHLKAREEQLSHEVAMLREA 411
+E +L + +L + +RE
Sbjct: 1086 CEAEMDNLTKKLRKLERDYHEMREQ 1110
Score = 38.8 bits (91), Expect = 0.020
Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 15/162 (9%)
Query: 25 LKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRR 84
L ++ +RR E+ L++ + LR + Q E+ T R L+++Q +
Sbjct: 961 LTEV--VQRRAHFSYEDAAEMLAKNSDLNEK----LRQRLEQAEQERTRAREQLRQAQAQ 1014
Query: 85 ADNESETKKKAEVNLQVISDMHEKLKTE---------AETATRLRKQSAELTVAKSAGEQ 135
++ + + M ++LK E + R R + EL SA
Sbjct: 1015 LAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRS 1074
Query: 136 MVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVN 177
+L+ L E E D L +++ L+ + R A
Sbjct: 1075 RRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116
Score = 34.9 bits (81), Expect = 0.33
Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 25/233 (10%)
Query: 287 MVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQ 346
M + E V + + + R +L + L+ + R V+ + + +L + DL+Q
Sbjct: 275 MRHANERRVHL-----EEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQD 329
Query: 347 INLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVA 406
+ L Q + Q ++E+ QA L+ L Q EE +
Sbjct: 330 YQAASDHLNLVQTALR---QQEKIERYQADLEELEERLEEQNE------VVEEA-DEQQE 379
Query: 407 MLREAKRNIEEEYHKLKT-----KRSVEDLQMKELQDQ-----LETEQYFSTLYKTQAHE 456
EEE +LK+ +++++ Q + +Q Q LE + L A
Sbjct: 380 ENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADN 439
Query: 457 LKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKE 509
++ L+E E EE L +L +A A A + + GE+ +
Sbjct: 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRS 492
Score = 33.4 bits (77), Expect = 0.92
Identities = 78/400 (19%), Positives = 156/400 (39%), Gaps = 50/400 (12%)
Query: 114 ETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKT 173
E A LR++ +A + +VE+ LA L L+Q+ QA + + +
Sbjct: 286 EEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQD---YQA--ASDHLNLV 340
Query: 174 QAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSL-EKECRLQALNTELER 232
Q +E R QA EL E +L E N + E E E R +A E++
Sbjct: 341 QTALRQQEKIERYQADLEEL------EERLEEQNEVVEEADEQQEENEARAEAAEEEVDE 394
Query: 233 NKHRELQLAEDNRHLGEK----------VSSLEKE---CASLSLELKAAQAQYQQEVRAH 279
K QLA+ + L + V +LE+ C L A+ + +E +A
Sbjct: 395 LKS---QLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED-WLEEFQAK 450
Query: 280 EETQKSRMVNKE-------------EASVEIVKELKDLMAKHRSDLSSKESLLSNGKER- 325
E+ +++ E E + ++V+++ +++ + ++E L ++R
Sbjct: 451 EQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRH 510
Query: 326 EVDYKKSIDQLMKD-REDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDL 384
+ + + + + + L+QQ + AE + L K+ + ++EQ Q + + L
Sbjct: 511 LAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESL 570
Query: 385 SVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQ 444
S SEA + Q ++ + + + ++ L+ ++ ++ E Q
Sbjct: 571 SESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQD--ALARLR-EQSGEEFEDSQ 627
Query: 445 YFSTLYKTQAHELKE---ELDERSRNILELEEERGDLTHR 481
+ + +E E DE + L+EE L+
Sbjct: 628 DVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQP 667
Score = 31.5 bits (72), Expect = 3.9
Identities = 34/150 (22%), Positives = 54/150 (36%), Gaps = 14/150 (9%)
Query: 23 GELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQ 82
EL+ L +++R L E ++L + + DE+ QL++ L L ES
Sbjct: 523 SELEQRLRQQQRAERLLAEFCKRLGKNLDDE--------DELEQLQEELEARLESLSESV 574
Query: 83 RRADNESETKKKAEVNLQVISDMHEKLKTEAETA----TRLRKQSAELTVAKSAG-EQMV 137
A ++ LQ A RLR+QS E S + +
Sbjct: 575 SEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGE-EFEDSQDVTEYM 633
Query: 138 VELQNILATLEMERDTLQQEVATLQAKISQ 167
+L L +ERD L L +I +
Sbjct: 634 QQLLERERELTVERDELAARKQALDEEIER 663
Score = 30.3 bits (69), Expect = 8.2
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 25 LKDLLERER---REMSQLEERQRQLSEQYEAVSARETALRDEMGQL 67
++ LLERER E +L R++ L E+ E +S + + L
Sbjct: 633 MQQLLERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNAL 678
>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein
Serine/Threonine Kinases, RPK118 and similar proteins.
Serine/Threonine Kinases (STKs), RPK118-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RPK118-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily show similarity to
human RPK118, which contains an N-terminal Phox homology
(PX) domain, a Microtubule Interacting and Trafficking
(MIT) domain, and a kinase domain containing a long
insert. Also included in the family is human RPK60 (or
ribosomal protein S6 kinase-like 1), which also contains
MIT and kinase domains but lacks a PX domain. RPK118
binds sphingosine kinase, a key enzyme in the synthesis
of sphingosine 1-phosphate (SPP), a lipid messenger
involved in many cellular events. RPK118 may be involved
in transmitting SPP-mediated signaling. RPK118 also
binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118
may be involved in the transport of PRDX3 from the
cytoplasm to its site of function in the mitochondria.
Length = 237
Score = 45.2 bits (107), Expect = 8e-05
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 673 LSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEI- 731
L +H ++ RDL P+NIL+D I++ + DS C E + Y APE+
Sbjct: 98 LDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDS--CDGEAV-ENMYCAPEVG 154
Query: 732 LISNRRYTHHVDIWSLGCILAEMLQSKPLF----PGASTSHQLQL 772
IS T D WSLG IL E+L K L G +T L +
Sbjct: 155 GISEE--TEACDWWSLGAILFELLTGKTLVECHPSGINTHTTLNI 197
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 45.9 bits (109), Expect = 9e-05
Identities = 59/298 (19%), Positives = 121/298 (40%), Gaps = 46/298 (15%)
Query: 144 LATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQL 203
A + + +Q+E+A L+ KI +++ + + LE +L++L TE+ + + ++
Sbjct: 33 AAADDKQLKQIQKEIAALEKKIREQQDQRAK-------LEKQLKSLETEIASLEAQLIET 85
Query: 204 AEDNRHLGEKVSSLEKECRLQALNTELERNKHR-ELQLAEDNRHLGEKVSSLEKECASLS 262
A+D + L ++++ L RL AL + + R QLA R G +
Sbjct: 86 ADDLKKLRKQIADLNA--RLNALEVQEREQRRRLAEQLAALQR-SGRNPPPALLVSPEDA 142
Query: 263 LELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNG 322
Y A E + + LK L A R++++++++ L+
Sbjct: 143 QRSVRLAIYYGALNPARAERIDA-----------LKATLKQL-AAVRAEIAAEQAELTTL 190
Query: 323 KEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQS 382
+ + + QL+++R+ Q+N E + +++LE+ + +S+++ E A
Sbjct: 191 LSEQRAQQAKLAQLLEERKKTLAQLN--SELSADQKKLEELRANESRLKNEIAS------ 242
Query: 383 DLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQL 440
+EAA KARE A + KR+ E + + L
Sbjct: 243 ------AEAAAAKAREA---------AAAAEAAAARARAAEAKRTGETYKPTAPEKML 285
Score = 44.3 bits (105), Expect = 3e-04
Identities = 43/222 (19%), Positives = 85/222 (38%), Gaps = 6/222 (2%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQR 83
E +D + +++ LE L Q + LR ++ L L L +E +R
Sbjct: 56 EQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRR 115
Query: 84 RADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNI 143
R + +++ N + + +A+ + RL L A+ + + L+
Sbjct: 116 RLAEQLAALQRSGRNPPPALLVSPE---DAQRSVRLAIYYGALNPAR---AERIDALKAT 169
Query: 144 LATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQL 203
L L R + E A L +S++R+ + + L +E + L LN+EL ++ + +L
Sbjct: 170 LKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEEL 229
Query: 204 AEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNR 245
+ L +++S E + AE R
Sbjct: 230 RANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKR 271
Score = 42.8 bits (101), Expect = 9e-04
Identities = 43/257 (16%), Positives = 97/257 (37%), Gaps = 24/257 (9%)
Query: 38 QLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNE-SETKKKAE 96
+++ +Q+ ++ A+ + +D+ +LEK L L+ + + ET +
Sbjct: 35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLK----SLETEIASLEAQLIETADDLK 90
Query: 97 VNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQ 156
+ I+D++ +L + R+Q L +A ++ +N L + + Q+
Sbjct: 91 KLRKQIADLNARLNALE---VQEREQRRRLAEQLAALQRSG---RNPPPALLVSPEDAQR 144
Query: 157 EV--ATLQAKISQERSSKTQAVNLHKELEGRLQALNT-----ELERNKHRELQLAEDNRH 209
V A ++ R+ + L+ L+ L E+ + L + +
Sbjct: 145 SVRLAIYYGALNPARAERI------DALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQ 198
Query: 210 LGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQ 269
E++ L LN+EL ++ + +L + L +++S E A AA+
Sbjct: 199 AKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAE 258
Query: 270 AQYQQEVRAHEETQKSR 286
A + A +
Sbjct: 259 AAAARARAAEAKRTGET 275
Score = 32.8 bits (75), Expect = 1.2
Identities = 28/168 (16%), Positives = 67/168 (39%), Gaps = 10/168 (5%)
Query: 949 KKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEK----LHKQLKQEQLLKAQAVNKL 1004
+ +L K + L+ +I L+ +L ++++ +++ K L+ +L ++ + + +L
Sbjct: 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117
Query: 1005 AEIMN---RKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQ 1061
AE + R N A + L R + + K+L
Sbjct: 118 AEQLAALQRSGRNPPPALLVSPEDAQ---RSVRLAIYYGALNPARAERIDALKATLKQLA 174
Query: 1062 ELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSAD 1109
+++++ E L E ++ +++ QL + ++ S SAD
Sbjct: 175 AVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSAD 222
>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase
adapter protein beta. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) beta
subfamily, pseudokinase domain. The STRAD-beta subfamily
is part of a larger superfamily that includes the
catalytic domains of serine/threonine kinases (STKs),
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The pseudokinase domain shows similarity to
protein kinases but lacks crucial residues for catalytic
activity. STRAD forms a complex with the scaffolding
protein MO25, and the STK, LKB1, resulting in the
activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. STRAD-beta is also referred to as ALS2CR2
(Amyotrophic lateral sclerosis 2 chromosomal region
candidate gene 2 protein), since the human gene encoding
it is located within the juvenile ALS2 critical region
on chromosome 2q33-q34. It is not linked to the
development of ALS2.
Length = 328
Score = 45.7 bits (108), Expect = 1e-04
Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 18/204 (8%)
Query: 611 LFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIM 666
+ L F RHPNI+T ++ L+V+ +M N L K + + + I I+
Sbjct: 50 VVLSHFFRHPNIMTSWTVFTT--GSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNIL 107
Query: 667 FQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSL-SDSKECLTEY----- 720
F GL+Y+H +HR++K S+ILI + + L SL + ++ Y
Sbjct: 108 FGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQF 167
Query: 721 -IATRWYRAPEILISNRR-YTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVNLVR 778
+ + +PE+L + Y DI+S+G E+ + F + Q+++ ++
Sbjct: 168 STSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPF---QDMLRTQMLLQKLK 224
Query: 779 PNPPHADKFYAGFKSKHEREKFNQ 802
PP++ F + R K +Q
Sbjct: 225 -GPPYSPLDITTFPCEESRMKNSQ 247
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 46.1 bits (109), Expect = 1e-04
Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 38/228 (16%)
Query: 6 LHGFQVDNAIPNGG----QANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALR 61
V+N IP A L+ +++ + E+ Q + + +L Q +++ E +L+
Sbjct: 388 SANGTVENCIPENKISTPSAIERLEQDIKKLQAELQQARQNESELRNQISLLTSLERSLK 447
Query: 62 DEMGQLEKNLTILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETAT---- 117
++GQL+K +L Q + ++ K+K + Q + M ++LK+EA++
Sbjct: 448 SDLGQLKKENDML-------QTKLNSMVSAKQKDK---QSMQSMEKRLKSEADSRVNAEK 497
Query: 118 -----RLRKQSAELTVAKSAG------EQMVVELQNILATLEMERDTLQQEVATLQAKIS 166
+ RK+ E T A++A E+ L+ LEME L+ + L+ K
Sbjct: 498 QLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHD---LKLKEE 554
Query: 167 QERSSKTQAVNLH------KELEGRLQALNTELERNKHRELQLAEDNR 208
+ R + +A L KE E + AL ++N E L+ + R
Sbjct: 555 ECRMLEKEAQELRKYQESEKETEVLMSALQAMQDKNLMLENSLSAETR 602
Score = 39.1 bits (91), Expect = 0.014
Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 29/212 (13%)
Query: 298 VKELKDLMAKHR---SDLSSKESLLSN----------GKEREVD-----YKKSIDQLMKD 339
+K+L+ + + R S+L ++ SLL++ ++E D + KD
Sbjct: 415 IKKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKD 474
Query: 340 REDLQQQINLLKEGAELRQELEK----SKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLK 395
++ +Q LK A+ R EK K + + E+ A+ + + + +E+ LK
Sbjct: 475 KQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAES--LK 532
Query: 396 AREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQ-- 453
++ L E+ L + EEE L+ + + + ETE S L Q
Sbjct: 533 QAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQ---ESEKETEVLMSALQAMQDK 589
Query: 454 AHELKEELDERSRNILELEEERGDLTHRLQLA 485
L+ L +R L+L GD+ +L++A
Sbjct: 590 NLMLENSLSAETRLKLDLFSALGDVKRQLEIA 621
Score = 38.4 bits (89), Expect = 0.030
Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 920 LKDLMAKHR---SDLSSKESLLSN----------GKEREVD-----YKKSIDQLMKDRED 961
L+ + + R S+L ++ SLL++ ++E D + KD++
Sbjct: 418 LQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQS 477
Query: 962 LQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKS 1021
+Q LK E N+ +++ + K+ K+E+ A+A + A +R++ + K
Sbjct: 478 MQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAA--SREECAESLKQAK 535
Query: 1022 -------KASSADVRKKEKECRKLQQE-----LTQEREKFNQVVVKCQKELQELQSQVVE 1069
K D++ KE+ECR L++E QE EK +V++ + +Q+ ++ ++E
Sbjct: 536 QDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQESEKETEVLMSALQAMQD-KNLMLE 594
Query: 1070 ENTS-----KLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVE 1111
+ S KL L L ++E G + +E L S +
Sbjct: 595 NSLSAETRLKLDLFSALGDVKRQLEIAHGAIYKREAEIVDLKSKIAD 641
Score = 36.4 bits (84), Expect = 0.099
Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 19/180 (10%)
Query: 124 AELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQAKI----SQERSSKTQAVNLH 179
+ K + + L+ + L+ E +Q + L+ +I S ERS K+ L
Sbjct: 395 NCIPENKISTPSAIERLEQDIKKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQLK 454
Query: 180 KE---LEGRLQALNTELERNKH------RELQLAEDNRHLGEKVSSLEKECRLQALNTEL 230
KE L+ +L ++ + +++K + L+ D+R EK + EK+ + + T
Sbjct: 455 KENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAA 514
Query: 231 ERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQ------QEVRAHEETQK 284
E L + LE E L +LK + + + QE+R ++E++K
Sbjct: 515 RAAAQAAASREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQESEK 574
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 44.5 bits (105), Expect = 4e-04
Identities = 90/442 (20%), Positives = 160/442 (36%), Gaps = 57/442 (12%)
Query: 35 EMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESETKKK 94
E + + R+L+E A E + L T LR K + +AD E E +
Sbjct: 305 EQYRHVDMSRELAELNGAEGDLEADYQAASDHLNLVQTALRQQEKIERYQADLE-ELTIR 363
Query: 95 AEVNLQVISDMHEKLKTEAETAT-------RLRKQSAELTVAKSAGEQMVVELQNILATL 147
E +V+ + +E+ + A L+ Q A+ A + ++ Q +A L
Sbjct: 364 LEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAAL 423
Query: 148 EMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDN 207
E ++ + L A ++E + + + + +L + + + +A+
Sbjct: 424 ERAKELCH--LPDLTADSAEE---------WLETFQAKEEEATEKLLSLEQK-MSMAQAA 471
Query: 208 RHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKA 267
E+ L + +E L+ D RHL E+V L LS EL+
Sbjct: 472 HSQFEQAYQLVVAIAGELARSEAWDVARELLREGPDQRHLAEQVQPLR---MRLS-ELEQ 527
Query: 268 AQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREV 327
Q Q R + K + N + EL+ L + + + S +SN +E+ +
Sbjct: 528 RLRQQQSAERLLADFCKRQGKNLDAE------ELEALHQELEALIESLSDSVSNAREQRM 581
Query: 328 DYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQ 387
L +++E LQ +I L Q Q+ +EQ + +D
Sbjct: 582 -------ALRQEQEQLQSRI------QSLMQRAPVWLAAQNALEQLSEQSGEEFTDSQDV 628
Query: 388 TSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQ-------- 439
T L RE + + E L K ++EE +L ED ++ L ++
Sbjct: 629 TEYMQQLLEREREATVERDELGARKNALDEEIERLSQPGGSEDQRLNALAERFGGVLLSE 688
Query: 440 ------LETEQYFSTLYKTQAH 455
+E YFS LY H
Sbjct: 689 IYDDVTIEDAPYFSALYGPSRH 710
Score = 36.4 bits (84), Expect = 0.11
Identities = 67/324 (20%), Positives = 126/324 (38%), Gaps = 40/324 (12%)
Query: 30 ERERREMSQLEERQRQLSEQYEAVS----------ARETALRDEMGQLEKNLTILRHDLK 79
E+ R + LEE +L EQ E V AR A E+ +L+ L + L
Sbjct: 348 EKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALD 407
Query: 80 ESQRRA----------DNESETKKKAEVNLQVISDMHEKLKTEAETAT-RLRKQSAELTV 128
Q RA + E ++ + E + + E AT +L ++++
Sbjct: 408 VQQTRAIQYQQAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSM 467
Query: 129 AKSAGEQMVVELQNILATL-EMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQ 187
A++A Q Q ++A E+ R L + + + A + + L RL
Sbjct: 468 AQAAHSQFEQAYQLVVAIAGELARSEAWDVAREL---LREGPDQRHLAEQV-QPLRMRLS 523
Query: 188 ALNTELERNKHRELQLAEDNRHLG-----EKVSSL--EKECRLQALNTELERNKHRELQL 240
L L + + E LA+ + G E++ +L E E +++L+ + + + + L
Sbjct: 524 ELEQRLRQQQSAERLLADFCKRQGKNLDAEELEALHQELEALIESLSDSVSNAREQRMAL 583
Query: 241 AEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMV-NKEEASVEIVK 299
++ L ++ SL + L A A Q ++ EE S+ V + +E +
Sbjct: 584 RQEQEQLQSRIQSLMQRAPVW---LAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLERER 640
Query: 300 EL---KDLMAKHRSDLSSKESLLS 320
E +D + ++ L + LS
Sbjct: 641 EATVERDELGARKNALDEEIERLS 664
Score = 31.0 bits (70), Expect = 5.3
Identities = 70/365 (19%), Positives = 139/365 (38%), Gaps = 55/365 (15%)
Query: 208 RHLGEKVSSLEKECRLQ----ALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSL 263
RH E+ L++ + +L ++R + ++ + L LE + + S
Sbjct: 276 RHANERRVHLDQALEFRRELYTSRQQLAAEQYRHVDMSRELAELNGAEGDLEADYQAASD 335
Query: 264 ELKAAQ-AQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNG 322
L Q A QQE + + + E E+V+E + ++ + + E +
Sbjct: 336 HLNLVQTALRQQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDEL 395
Query: 323 KEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQS 382
K + DY++++D QQ I LE++K L
Sbjct: 396 KSQLADYQQALDVQQTRAIQYQQAI----------AALERAKELCHL------------P 433
Query: 383 DLSVQTSEAAH--LKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQL 440
DL+ ++E +A+EE+ + ++ L E K ++ + H + Q +L +
Sbjct: 434 DLTADSAEEWLETFQAKEEEATEKLLSL-EQKMSMAQAAHS-------QFEQAYQLVVAI 485
Query: 441 ETEQYFSTLYKTQAHELKEELDER--SRNILELEEERGDLTHRLQLAVARADSEALARSI 498
E S + L+E D+R + + L +L RL+ + +E L
Sbjct: 486 AGELARSEAWDVARELLREGPDQRHLAEQVQPLRMRLSELEQRLR---QQQSAERLLADF 542
Query: 499 AEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDRED 558
+ L+ E EL+ L + + + S +SN +E+ + L +++E
Sbjct: 543 CKRQGKNLDAE------ELEALHQELEALIESLSDSVSNAREQRM-------ALRQEQEQ 589
Query: 559 LQQQI 563
LQ +I
Sbjct: 590 LQSRI 594
>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine
Kinase, Apoptosis-associated tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Aatyk2 is
a member of the Aatyk subfamily of proteins, which are
receptor kinases containing a transmembrane segment and
a long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk2 is also called lemur tyrosine kinase 2
(Lmtk2) or brain-enriched kinase (Brek). It is expressed
at high levels in early postnatal brain, and has been
shown to play a role in nerve growth factor (NGF)
signaling. Studies with knockout mice reveal that Aatyk2
is essential for late stage spermatogenesis. Although it
is classified as a tyr kinase based on sequence
similarity and the phylogenetic tree, Aatyk2 has been
characterized as a serine/threonine kinase.
Length = 268
Score = 43.3 bits (102), Expect = 4e-04
Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 26/194 (13%)
Query: 618 RHPNIITMLDIYKAVNNKDLYVVFEYME-NDLNKVIR--DKILKDVHIRYIMFQLCN--- 671
+HPNI+ L + V +VFEY E DL + ++ + + C
Sbjct: 53 QHPNILQCLG--QCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAA 110
Query: 672 GLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTE---YIATRWYRA 728
G++++H +H DL N + ++K+GD G+ S TE + RW A
Sbjct: 111 GVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWL-A 169
Query: 729 PEILIS------NRRYTHHVDIWSLGCILAEMLQ-SKPLFPGASTSHQLQLI-----VNL 776
PE++ T ++W+LG L E+ + + + S L + V L
Sbjct: 170 PELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKL 229
Query: 777 VRPN--PPHADKFY 788
+P P+++++Y
Sbjct: 230 FKPQLELPYSERWY 243
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 44.2 bits (104), Expect = 5e-04
Identities = 66/372 (17%), Positives = 123/372 (33%), Gaps = 10/372 (2%)
Query: 107 EKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQAKIS 166
E+LK E L + +L K ++ + + L +++ +E L
Sbjct: 174 ERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYL 233
Query: 167 QERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQAL 226
+ + + E + + + L EK L++E L
Sbjct: 234 KLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKL-L 292
Query: 227 NTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSR 286
E E K L+L EK+ EKE L ELK ++E E +
Sbjct: 293 AKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKK-----EKEEIEELEKELKE 347
Query: 287 MVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQ 346
+ K EA E ++L+ L K + ER K ++ ++ + + +++
Sbjct: 348 LEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKE 407
Query: 347 INLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVA 406
LL E +E ++L K + + E+ ++ + + E+Q +
Sbjct: 408 AKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKE----ELEKQALKLLK 463
Query: 407 MLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSR 466
E K++ + K + + Q E Q S + A L D
Sbjct: 464 DKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGL 523
Query: 467 NILELEEERGDL 478
I+ GDL
Sbjct: 524 RIISAAGRGGDL 535
Score = 42.6 bits (100), Expect = 0.002
Identities = 85/564 (15%), Positives = 186/564 (32%), Gaps = 27/564 (4%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQR 83
ELK L + ++E ++EE +++L E A E EK + L + +
Sbjct: 323 ELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKL 382
Query: 84 RADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNI 143
++ S K E L++ + + + EA+ L +Q +L + E +VE
Sbjct: 383 ESERLSSAAKLKEEELELKN----EEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEE 438
Query: 144 LATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQL 203
+ + T ++E QA + + K+ E L+ + L L
Sbjct: 439 SLETKQGKLTEEKEELEKQALKLLKDKLEL------KKSEDLLKETKLVKLLEQLELLLL 492
Query: 204 AEDNRHLGEKVSSLEKEC-RLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLS 262
+ +K S + L AL + + + + + A +
Sbjct: 493 RQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIV 552
Query: 263 LELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNG 322
A +++ T+ ++K +A D + + L+
Sbjct: 553 EVSAVADEVDERQKLVRALTELPLPARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKA 612
Query: 323 KEREVDYKKSIDQLMKDRED------------LQQQINLLKEGAELRQELEKSKTLQSQV 370
+ K + +D + + E E + K S++
Sbjct: 613 TLEADEDDKRAKVVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSEL 672
Query: 371 EQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVED 430
+E + LQ + ++ L+ +EE E + E K+ E+ L K
Sbjct: 673 TKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQ 732
Query: 431 ----LQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAV 486
++K L+ +++ ++ + + E +EE E S EL EE
Sbjct: 733 DKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEE 792
Query: 487 ARADSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYK 546
+A + E+ + ++E +L + + +E L +E++++
Sbjct: 793 KEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKL 852
Query: 547 KSIDQLMKDREDLQQQINLLKEGK 570
+ + E ++++ K
Sbjct: 853 AEEELERLEEEITKEELLQELLLK 876
Score = 34.6 bits (79), Expect = 0.40
Identities = 109/816 (13%), Positives = 267/816 (32%), Gaps = 49/816 (6%)
Query: 280 EETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKD 339
EET+ + + +++ + AK + + L +E + +
Sbjct: 181 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERI 240
Query: 340 REDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREE 399
+ + +E +QELEK + + +QV +E ++ + Q E L EE
Sbjct: 241 DLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKL---QEEELKLLAKEEE 297
Query: 400 QLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKE 459
+L E L + +R ++ KLK + ++K+L+ +L+ K + EL++
Sbjct: 298 ELKSE---LLKLERRKVDDEEKLK----ESEKELKKLEKELK-------KEKEEIEELEK 343
Query: 460 ELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKEKTMKELELKD 519
EL E EEE L + + + + E + K K +ELELK+
Sbjct: 344 ELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE-EELELKN 402
Query: 520 LMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGKGAYGIVYKA 579
K L ++ E K+ + +K E+L++ + +
Sbjct: 403 EEEKEAKLLLELS------EQEEDLLKEEKKEELKIVEELEESLETKQG--------KLT 448
Query: 580 YDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDIYKAVNNKDLYV 639
+K + A+K + ++K + +++ + K + + +L K
Sbjct: 449 EEKEELEKQALKLL----KDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKES 504
Query: 640 VFEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSI 699
L +I+D + + G V + + S +I + ++
Sbjct: 505 KAREGLAVLLALIKDGVG-------LRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAV 557
Query: 700 KIGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKP 759
+ + E L +D L +
Sbjct: 558 ADEVDERQKLVRALTELPLPARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEAD 617
Query: 760 LFPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKHEREKFNQVVVKCQKELQELQSQVV 819
+ + L + A +G + E+ + + L EL +++
Sbjct: 618 EDDKRAKVVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELL 677
Query: 820 EENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVENDESYVQDSRLEGWVSI 879
E + K + EL + Q + K + + + + +
Sbjct: 678 AEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQ----- 732
Query: 880 PNKQNIKRHGWKKQYVVVSSKKIIFYNSENDKQNTDPELELKDLMAKHRSDLSSKESLLS 939
+K N + +++ ++ + +++ EL LK+ + + K +
Sbjct: 733 -DKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEE 791
Query: 940 NGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQ 999
+E+ ++ + L ++ ++ + + + + + EE + +E+ +
Sbjct: 792 EKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEK 851
Query: 1000 AVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKE 1059
+ E + + + ++ +++ + +E ++ EK +
Sbjct: 852 LAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDN 911
Query: 1060 LQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKL 1095
L E + +EE ++ + + + E L+
Sbjct: 912 LLEEKENEIEERIAEEAIILLKYESEPEELLLEEAD 947
Score = 31.5 bits (71), Expect = 4.0
Identities = 106/773 (13%), Positives = 243/773 (31%), Gaps = 48/773 (6%)
Query: 351 KEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLRE 410
+ +L +E E L +E+ + ++ L+ + E + + + +
Sbjct: 174 ERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYL 233
Query: 411 A--KRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNI 468
+ I+ L+ ++ + +EL+ + E K + E K + +E
Sbjct: 234 KLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLA 293
Query: 469 LELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKEKT--------MKELELKDL 520
E EE + +L + V + + ++ EL+KEK +KELE+K
Sbjct: 294 KEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKRE 353
Query: 521 MAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGKGAYGIVYKAY 580
+ + K E E+ KK ++ ++ L + +
Sbjct: 354 AEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLE 413
Query: 581 DKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDIYKAVNNKDLYVV 640
++ + ++ E + + + + + ++ + + + +L
Sbjct: 414 LSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKE--ELEKQALKLLKDKLELKKS 471
Query: 641 FEYMENDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIK 700
+ ++ + +++ + + + V+ +K L S + +
Sbjct: 472 EDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGR 531
Query: 701 IGDLGLARSLSDSKECLTEYIATRWYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPL 760
GDLG+A + + I + A P
Sbjct: 532 GGDLGVAVANYKVAISVAV-------------IVEVSAVADEVDERQKLVRALTELPLPA 578
Query: 761 FPGASTSHQLQLIVNLVRPNPPHADKFYAGFKSKHEREKFNQVVVKCQKELQELQSQVVE 820
L+L + + A +K E E +++ +
Sbjct: 579 RTFVLLDPLLKLPLKSIAVLEIDPALNLA-QLNKATLEADEDDKRAKVVEGILKDTELTK 637
Query: 821 ENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVENDESYVQDSRLEGWVSIP 880
S + L S E L K S + E + +S L +
Sbjct: 638 LLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEILR 697
Query: 881 NKQNIKRHG------WKKQYVVVSSKKIIFYNSENDKQNTDPELELKDLMAKHRSDLSSK 934
++ IK+ KK + DK N + +L + + K +
Sbjct: 698 RQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEK-----EEE 752
Query: 935 ESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHK------ 988
E KE E + K + K+ + +++ LK E K + E+L
Sbjct: 753 EEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELK 812
Query: 989 ----QLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKS-KASSADVRKKEKECRKLQQELT 1043
L++EQLL Q E + + + K K + ++ + E+E K +
Sbjct: 813 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQE 872
Query: 1044 QEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLA 1096
++ K + EL+ + + EE + + + + + +++ ++A
Sbjct: 873 LLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIA 925
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 43.5 bits (103), Expect = 7e-04
Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 38/202 (18%)
Query: 304 LMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKS 363
L+ +S S++S L E + I QL + LQ Q+ L++ E+ E ++
Sbjct: 127 LIKGQQSLFESRKSTLRAQLELIL---AQIKQLEAELAGLQAQLQALRQQLEVISEELEA 183
Query: 364 KTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLR-EAKRNIEEEYHKL 422
+ +++++ S L+ E+ + + R EA+ L
Sbjct: 184 ---RRKLKEKGL------------VSRLELLELERERAEAQGELGRLEAELE------VL 222
Query: 423 KTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRL 482
K + L+ ++++ E+ EEL E + EL E RL
Sbjct: 223 KRQIDELQLERQQIEQTF-------------REEVLEELTEAQARLAELRERLNKARDRL 269
Query: 483 QLAVARADSEALARSIAEETVG 504
Q + R+ + +S+ TVG
Sbjct: 270 QRLIIRSPVDGTVQSLKVHTVG 291
Score = 40.8 bits (96), Expect = 0.004
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 134 EQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTEL 193
E L+ L + + L+ E+A LQA++ ++ + Q + +ELE R + L
Sbjct: 136 ESRKSTLRAQLELILAQIKQLEAELAGLQAQL---QALRQQLEVISEELEARRKLKEKGL 192
Query: 194 -ERNKHREL--QLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEK 250
R + EL + AE LG + LE + Q +LER + + E + E+
Sbjct: 193 VSRLELLELERERAEAQGELGRLEAELEV-LKRQIDELQLERQQIEQTFREE----VLEE 247
Query: 251 VSSLEKECASLSLELKAAQAQYQQEV 276
++ + A L L A+ + Q+ +
Sbjct: 248 LTEAQARLAELRERLNKARDRLQRLI 273
Score = 32.7 bits (75), Expect = 1.2
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 22/163 (13%)
Query: 923 LMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEE 982
L+ +S S++S L E + I QL + LQ Q+ L+++L S E
Sbjct: 127 LIKGQQSLFESRKSTLRAQLELIL---AQIKQLEAELAGLQAQLQALRQQLEVISEELEA 183
Query: 983 MEKL-HKQLKQE-QLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQ 1040
KL K L +LL+ + + AE + ++ A++ +++ +LQ
Sbjct: 184 RRKLKEKGLVSRLELLELE--RERAEA--QGELGR--------LEAELEVLKRQIDELQL 231
Query: 1041 ELTQEREKFNQVVVKCQKELQELQSQV--VEENTSKLKLQMEL 1081
E Q + F + V +EL E Q+++ + E +K + +++
Sbjct: 232 ERQQIEQTFREEV---LEELTEAQARLAELRERLNKARDRLQR 271
Score = 32.3 bits (74), Expect = 1.5
Identities = 39/193 (20%), Positives = 85/193 (44%), Gaps = 20/193 (10%)
Query: 367 QSQVEQEQAKKFSLQSD---LSVQTSEAAHLKAREEQLSHEVAMLRE----AKRNIEEEY 419
++ + +++ L+++ L + A ++ ++ LS E + E + E
Sbjct: 80 EADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRK 139
Query: 420 HKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSR----------NIL 469
L+ + + Q+K+L+ +L Q + Q + EEL+ R + +L
Sbjct: 140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELL 199
Query: 470 ELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLS 529
ELE ER + + +L A+ E L R I E + + E+T +E E+ + + + ++ L+
Sbjct: 200 ELERERAEA--QGELGRLEAELEVLKRQIDELQLERQQIEQTFRE-EVLEELTEAQARLA 256
Query: 530 SKESLLSNGKERE 542
L+ ++R
Sbjct: 257 ELRERLNKARDRL 269
Score = 31.9 bits (73), Expect = 2.5
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 26/198 (13%)
Query: 144 LATLEMERDTLQQEVATLQA-------------KISQERSSKTQAVNLHKEL-EGRLQAL 189
A LE + L+ EVA L+A +S E + + + + L E R L
Sbjct: 83 AAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTL 142
Query: 190 NTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELE-RNKHRELQLAEDNRHLG 248
+LE + QL + L ++ +L + +L+ ++ ELE R K +E L L
Sbjct: 143 RAQLELILAQIKQLEAELAGLQAQLQALRQ--QLEVISEELEARRKLKEKGLVSRLELL- 199
Query: 249 EKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKH 308
LE+E A EL +A+ + R +E Q R ++ E+++EL +
Sbjct: 200 ----ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEA---- 251
Query: 309 RSDLSSKESLLSNGKERE 326
++ L+ L+ ++R
Sbjct: 252 QARLAELRERLNKARDRL 269
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 43.3 bits (102), Expect = 0.001
Identities = 103/555 (18%), Positives = 191/555 (34%), Gaps = 59/555 (10%)
Query: 27 DLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILR-HDLKESQRRA 85
L R +++S+++ +L+E + A LRD+ R HDL+ +
Sbjct: 316 QALVRLHQQLSEIKASAFELTETLAGIEAD---LRDKEEAAGNGFEAERVHDLRSLECML 372
Query: 86 DNESETKKKAEVNLQVISDMHEKL----KTEAETATRLRKQSAELTVAKSAGEQMVVELQ 141
+S ++ + + EK + E E RL E+ A E+ +
Sbjct: 373 RYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANS 432
Query: 142 NIL---ATLEM--ERDTLQQEVATLQAKISQERSSKT-QAVNLHKELEGRLQALNTELER 195
++ + RDT Q+ L+ K + KT + L G L + L
Sbjct: 433 QVIDKEEVCNLYDRRDTAWQKQRFLREKQTAFERQKTEHTKIIALRLAGMLLVALSRLLT 492
Query: 196 NKHRELQLAEDNRH--LGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSS 253
+ ++ A E SS +A T++ R L E
Sbjct: 493 SLIFQIIFAVAQIVFLSAEIKSSSRAVREEKAAVTDIPEELARLLITDE----------- 541
Query: 254 LEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLS 313
L A Q +R H + + + E A + A S
Sbjct: 542 ---------LPELAVDLLVQSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQS 592
Query: 314 S-KESLLSNGKEREVDYKKSID--QLMKDREDLQQQI-NLLKEGAELRQELEKSKTLQSQ 369
+E+L G RE+ ++ +D MKD + L Q+ L + A LR+E + +
Sbjct: 593 EWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQA---AFEER 649
Query: 370 VEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVE 429
VE A + DLS A E Q + + E + +TK +
Sbjct: 650 VEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKE---------EARLALEGNIERTKELND 700
Query: 430 DLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARA 489
+L+ + + E F +E + + + E L QL A
Sbjct: 701 ELRAELELHRKEILDLFDCGTADTEDAFREA-AREEQQLTQRESRLESLEA--QLEGVAA 757
Query: 490 DSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSI 549
++ L+ S+ + + E E E D + + +L ++ + LS +++ ++
Sbjct: 758 EAYELSASLDQRELKEEELA---LLEEAIDALDEEVEELHAQVAALSRQIA-QLEGGGTV 813
Query: 550 DQLMKDREDLQQQIN 564
+L + RE L++ +
Sbjct: 814 AELRQRRESLKEDLE 828
Score = 39.8 bits (93), Expect = 0.010
Identities = 53/255 (20%), Positives = 92/255 (36%), Gaps = 18/255 (7%)
Query: 154 LQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEK 213
+ Q + L+ + ++ ++ + HK LE R E R +L D H+
Sbjct: 183 INQLLEKLKQERNEIDEAEKEYATYHKLLESR----RAEHARLAELRSELRADRDHIRAL 238
Query: 214 VSSLEKECRLQ---ALNTELERNKHRELQLAEDNRHLGEK----VSSLEKECASLSLELK 266
++E RLQ L EL R + D EK + E E +L + L
Sbjct: 239 RDAVELWPRLQEWKQLEQELTRRREELATFPRDGVLRLEKREAHLQKTEAEIDALLVRLA 298
Query: 267 AAQAQYQQEVRAHEETQKSRMVNKEEASV--EIVKELKDLMAKHRSDLSSKESLLSNGKE 324
+ Q + A E ++ + ++ S EL + +A +DL KE NG E
Sbjct: 299 ELKDLASQLIPAKEAVLQALVRLHQQLSEIKASAFELTETLAGIEADLRDKEEAAGNGFE 358
Query: 325 REVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDL 384
E + + L Q L + A + L++ + E E+ + L D
Sbjct: 359 AERVHD--LRSLECMLRYQSSQRELKQTEAAYCKRLDEK--RLFEDEAEEEARQRLADDE 414
Query: 385 S-VQTSEAAHLKARE 398
V+ + A +
Sbjct: 415 EEVRAGDEAREEKIA 429
Score = 34.8 bits (80), Expect = 0.37
Identities = 102/579 (17%), Positives = 197/579 (34%), Gaps = 57/579 (9%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQR 83
EL L+ ++ +L R+ +L+ R + + E + L L E +
Sbjct: 243 ELWPRLQEWKQLEQELTRRREELATFPRDGVLRLEKREAHLQKTEAEIDALLVRLAELKD 302
Query: 84 RADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNI 143
A K+ + + ++ + + + + +
Sbjct: 303 LASQLIPAKE---------AVLQALVRLHQQLSEIKASAFELTETLAGIEADLRDKEEAA 353
Query: 144 LATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHR---- 199
E ER + + + S +R K K L+ + + E + R
Sbjct: 354 GNGFEAERVHDLRSLECMLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADD 413
Query: 200 --ELQLAEDNR-----HLGEKVSSLEKECRLQALNT-------ELERNKHRELQLAEDNR 245
E++ ++ R + + E +T E+ E Q E +
Sbjct: 414 EEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTAWQKQRFLREKQTAFERQKTEHTK 473
Query: 246 HLGEKVSSLEKECASLSLELKAAQAQYQQEVRAH---EETQKSRMVNKEEASVEIVKELK 302
+ +++ + S L Q + E SR V +E+A+V + E
Sbjct: 474 IIALRLAGMLLVALSRLLTSLIFQIIFAVAQIVFLSAEIKSSSRAVREEKAAVTDIPEEL 533
Query: 303 DLMAKHRSDLSSKESLLSNGKERE--VDYKKSIDQLMKDREDLQQQINLLKEG-AELRQE 359
+ LL + R+ +K++DQL E L+ + + AE + E
Sbjct: 534 ARLLITDELPELAVDLLVQSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSE 593
Query: 360 LEKSKT---LQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIE 416
E++ L ++ EQ Q D+ + L ++ +L+H+VA LRE + E
Sbjct: 594 WEEALDELGLSRELSPEQ------QLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFE 647
Query: 417 EEYHKLKTKRSVEDLQMKELQD--------QLETEQYFSTLYKTQAHELKEELDERSRNI 468
E L + + + L +L+ E+ L KE DE +
Sbjct: 648 ERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNI-ERTKELNDELRAEL 706
Query: 469 LELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKEKTMKELELKDL-MAKHRSD 527
+E DL AD+E R A E ++E ++ LE + +A +
Sbjct: 707 ELHRKEILDL-----FDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYE 761
Query: 528 LSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLL 566
LS+ +E +++ID L ++ E+L Q+ L
Sbjct: 762 LSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAAL 800
Score = 34.4 bits (79), Expect = 0.44
Identities = 68/340 (20%), Positives = 123/340 (36%), Gaps = 40/340 (11%)
Query: 102 ISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEV--- 158
I+D +L + +R+R+ +L A E L+ A E Q E
Sbjct: 538 ITDELPELAVDLLVQSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEA 597
Query: 159 -ATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSL 217
L + ++ K+L+ +L EL H+ +L E+ E+V L
Sbjct: 598 LDELGLSRELSPEQQLDILSTMKDLK-KLMQKKAELT---HQVARLREEQAAFEERVEGL 653
Query: 218 EKECRLQALN----------------------TELERNKHRELQLAEDNRHLGEKVSSLE 255
Q ++ LE N R +L N L ++
Sbjct: 654 LAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKEL---NDELRAELELHR 710
Query: 256 KECASL--SLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLS 313
KE L A + + TQ+ + EA +E V ++
Sbjct: 711 KEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRE 770
Query: 314 SKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQE 373
KE L+ +E + +++L L +QI L+ G + + ++ ++L+ +E++
Sbjct: 771 LKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEK 830
Query: 374 QAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKR 413
K SL+ L+VQ E A +E +L A+++EA
Sbjct: 831 ARKWASLR--LAVQVLEEALRLFKERRLP---AVIQEASE 865
Score = 34.0 bits (78), Expect = 0.66
Identities = 38/208 (18%), Positives = 80/208 (38%), Gaps = 9/208 (4%)
Query: 356 LRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNI 415
+ Q LEK K ++++++ + + + L + +E A L +L + +R R+
Sbjct: 183 INQLLEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRA-LRDA 241
Query: 416 EEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEER 475
E + +L+ + +E +EL + E F + + + L + I L
Sbjct: 242 VELWPRLQEWKQLE----QELTRRREELATFPRDGVLRLEKREAHLQKTEAEIDALLVRL 297
Query: 476 GDLTHRLQLAVARADSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLL 535
+L + ++ A + + E EL + +A +DL KE
Sbjct: 298 AELKDLASQLIPAKEAVLQAL----VRLHQQLSEIKASAFELTETLAGIEADLRDKEEAA 353
Query: 536 SNGKEREVDYKKSIDQLMKDREDLQQQI 563
NG E E + + M + Q+++
Sbjct: 354 GNGFEAERVHDLRSLECMLRYQSSQREL 381
Score = 30.6 bits (69), Expect = 7.4
Identities = 98/559 (17%), Positives = 194/559 (34%), Gaps = 70/559 (12%)
Query: 18 GGQANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHD 77
G A+ +L ++L +E + + R Q+++ E + + + + H
Sbjct: 155 GSPASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEKEYAT-----YHK 209
Query: 78 LKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMV 137
L ES+R E + L+ D L+ E RL++ E++
Sbjct: 210 LLESRRA---EHARLAELRSELRADRDHIRALRDAVELWPRLQEWKQLEQELTRRREELA 266
Query: 138 VELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNK 197
++ + LE LQ+ A + A + + K A L E LQAL
Sbjct: 267 TFPRDGVLRLEKREAHLQKTEAEIDALLVRLAELKDLASQLIPAKEAVLQALVR-----L 321
Query: 198 HRELQLA-EDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEK 256
H++L L E ++ +E + R + E R +
Sbjct: 322 HQQLSEIKASAFELTETLAGIEADLRDKEEAAG---------NGFEAERVHDLRSLECML 372
Query: 257 ECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKE 316
S ELK +A Y + + + R+ E + D D + +E
Sbjct: 373 RYQSSQRELKQTEAAYCKRL------DEKRLFEDEAEEEARQRLADDEEEVRAGDEAREE 426
Query: 317 SLLSNGKEREVDYKKSIDQLMKDREDLQQQINLL--KEGAELRQELEKSKTLQSQVEQEQ 374
+ +N + + K+ + L R+ Q+ L K+ A RQ+ E +K + ++
Sbjct: 427 KIAANSQVID---KEEVCNLYDRRDTAWQKQRFLREKQTAFERQKTEHTKIIALRLAGML 483
Query: 375 AKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMK 434
S + TS + Q+ A ++ + R + EE K +V D+ +
Sbjct: 484 LVALS-----RLLTSLIFQIIFAVAQIVFLSAEIKSSSRAVREE------KAAVTDIPEE 532
Query: 435 ELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEAL 494
+ + E + +++ + + + +LE L R A A
Sbjct: 533 LARLLITDELPELAVDLLVQSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAE--- 589
Query: 495 ARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMK 554
+S EE + EL + + + D+++ K + +LM+
Sbjct: 590 WQSEWEEALDELGLSRELSPEQQLDILSTM----------------------KDLKKLMQ 627
Query: 555 DREDLQQQINLLKEGKGAY 573
+ +L Q+ L+E + A+
Sbjct: 628 KKAELTHQVARLREEQAAF 646
>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase;
Provisional.
Length = 507
Score = 42.8 bits (100), Expect = 0.001
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 662 IRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLA 707
I+ +M Q+ GL +H ++HRD+KP N+L+ +KI D G A
Sbjct: 311 IKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAA 356
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope
biogenesis, outer membrane].
Length = 458
Score = 42.8 bits (101), Expect = 0.001
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 16/178 (8%)
Query: 38 QLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESET----KK 93
QL Q+ + + SAR + E +L L +L + + R ES T ++
Sbjct: 234 QLLSEQQLSALNTQLQSARARLAQAE-ARLASLLQLLPLGREAAALREVLESPTIQDLRQ 292
Query: 94 KAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDT 153
+ Q I+D+ +L + L Q AEL +Q+ EL+ ILA+L E
Sbjct: 293 QYAQVRQQIADLSTELGAKHPQLVALEAQLAELR------QQIAAELRQILASLPNELAL 346
Query: 154 LQQEVATLQAKISQERSSKTQAVNLHK---ELEGRLQALNTELER--NKHRELQLAED 206
L+Q+ A L+ +++Q + ++ L ELE +A + E +++EL + E
Sbjct: 347 LEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQEA 404
Score = 32.0 bits (73), Expect = 2.2
Identities = 51/335 (15%), Positives = 106/335 (31%), Gaps = 35/335 (10%)
Query: 86 DNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILA 145
+ E E + V +VI + E + L + + E+ L
Sbjct: 83 ETEIEILQSRSVLEKVIDKLKLDDDPEFVGKPLIASFLR-LLKDLIGPDPTIFEISYRLD 141
Query: 146 TLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAE 205
L K+ + S+ ++ L L + QL
Sbjct: 142 DLL------------ESLKVLRAGRSRVIELSYTSNDPKLAAKLANALAQAY-LADQLEA 188
Query: 206 DNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSL--EKECASLSL 263
SL++ RL+ L L+ + + + L E++ ++L+
Sbjct: 189 QLEAFRRASDSLDE--RLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNT 246
Query: 264 ELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGK 323
+L++A+A+ + A + + EA+ + R + +++
Sbjct: 247 QLQSARAR-LAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLS 305
Query: 324 EREVDYKKSIDQLMKDREDLQQQIN----------------LLKEGAELRQELEKSKTLQ 367
+ L +L+QQI L ++ A L +EL + K
Sbjct: 306 TELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRL 365
Query: 368 SQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLS 402
S++ + Q + L+ + S L R ++LS
Sbjct: 366 SKLPKLQVQLRELEREAEAARSLYETLLQRYQELS 400
>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related
kinase adapter protein alpha. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) alpha
subfamily, pseudokinase domain. The STRAD alpha
subfamily is part of a larger superfamily that includes
the catalytic domains of serine/threonine kinases
(STKs), protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The pseudokinase domain shows
similarity to protein kinases but lacks crucial residues
for catalytic activity. STRAD forms a complex with the
scaffolding protein MO25, and the STK, LKB1, resulting
in the activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. The structure of STRAD-alpha is available and
shows that this protein binds ATP, has an ordered
activation loop, and adopts a closed conformation
typical of fully active protein kinases. It does not
possess activity due to nonconservative substitutions of
essential catalytic residues. ATP binding enhances the
affinity of STRAD for MO25. The conformation of
STRAD-alpha, stabilized through ATP and MO25, may be
needed to activate LKB1. A mutation which results in a
truncation of a C-terminal part of the human STRAD-alpha
pseudokinase domain and disrupts its association with
LKB1, leads to PMSE (polyhydramnios, megalencephaly,
symptomatic epilepsy) syndrome. Several splice variants
of STRAD-alpha exist which exhibit different effects on
the localization and activation of LKB1.
Length = 327
Score = 42.2 bits (99), Expect = 0.001
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 21/188 (11%)
Query: 582 KNNKQYVAIKKI-FEAFRNKTDAQRTYREILFLKSFQRHPNIITMLDIYKA--VNNKDLY 638
K +YV +++I EA N + + L + HPNI+ Y+A + + +L+
Sbjct: 22 KPTGEYVTVRRINLEACTN--EMVTFLQGELHVSKLFNHPNIVP----YRATFIADNELW 75
Query: 639 VVFEYME----NDLNKVIRDKILKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILID 694
VV +M DL + ++ I YI+ + L YIH +HR +K S+ILI
Sbjct: 76 VVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILIS 135
Query: 695 KSCSIKIGDLGLARSLSDSKECLT------EY-IATRWYRAPEILISNRR-YTHHVDIWS 746
+ + L S+ + + L +Y + + +PE+L N + Y DI+S
Sbjct: 136 VDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYS 195
Query: 747 LGCILAEM 754
+G E+
Sbjct: 196 VGITACEL 203
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 42.3 bits (100), Expect = 0.001
Identities = 31/180 (17%), Positives = 69/180 (38%), Gaps = 9/180 (5%)
Query: 935 ESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQ 994
E E + D+L+++ + ++ +I L +EL E+ +L
Sbjct: 205 EEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAA 264
Query: 995 LL---KAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQ 1051
K + K+ ++ + + TC + + K + + ++LQ L + ++
Sbjct: 265 AKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE 324
Query: 1052 VVVK------CQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASL 1105
+ K+L EL++++ S + L + + IE+LQ + E A L
Sbjct: 325 LEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKL 384
Score = 41.2 bits (97), Expect = 0.003
Identities = 42/250 (16%), Positives = 90/250 (36%), Gaps = 50/250 (20%)
Query: 316 ESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEG-AELRQELEKSKTLQSQVEQEQ 374
E E + D+L+++ + ++ +I L + L ++E
Sbjct: 205 EEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE------------- 251
Query: 375 AKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLRE------AKRNIEEE---YHKLKTK 425
+ L+ + AA +K++ EQ + M + + I E K+K K
Sbjct: 252 ----DPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDK 307
Query: 426 RSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLA 485
+++L ++ + E+ +E +E+S+ +LEL+ + L
Sbjct: 308 LKELQHSLEKLDTAIDELE-----------EIMDEFNEQSKKLLELKNKISTNKQSLITL 356
Query: 486 VARADSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDY 545
V +A + + EL+ E EL L + + +S +E +
Sbjct: 357 VDKAKK-------VKAAIEELQAEFVDNAEELAKLQDELD-KIVKTKS----ELVKEKYH 404
Query: 546 KKSIDQLMKD 555
+ + L+KD
Sbjct: 405 RGIVTDLLKD 414
Score = 36.9 bits (86), Expect = 0.073
Identities = 48/245 (19%), Positives = 102/245 (41%), Gaps = 31/245 (12%)
Query: 139 ELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKH 198
EL + TL+M+ D +QQ++ T I ++R + + + + +E K
Sbjct: 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNK------YDELVEEAKT 231
Query: 199 RELQLAEDNRHLGEKVSSLEK-ECRLQALNTELERNK------HRELQLAEDNRH---LG 248
+ ++ E L V +E L LNT + K + +++ E
Sbjct: 232 IKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCT 291
Query: 249 EKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKH 308
+++S + +LK Q ++ A +E ++ M E S ++ ELK
Sbjct: 292 QQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEE-IMDEFNEQSKKL-LELK------ 343
Query: 309 RSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQS 368
+ +S+ + L ++ K +I++L + D +++ A+L+ EL+K +S
Sbjct: 344 -NKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEEL------AKLQDELDKIVKTKS 396
Query: 369 QVEQE 373
++ +E
Sbjct: 397 ELVKE 401
Score = 35.4 bits (82), Expect = 0.20
Identities = 47/263 (17%), Positives = 111/263 (42%), Gaps = 37/263 (14%)
Query: 332 SIDQLMKDR--------EDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSD 383
+D+L KD+ + L +I+ +++ + + + + + + A+K + +
Sbjct: 167 EMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEE--QRKKNGENIARKQNKYDE 224
Query: 384 LSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETE 443
L EA +KA E+L+ E+ L + +KL T + +++ ++E
Sbjct: 225 L---VEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAA-------KIKSKIEQF 274
Query: 444 QYFSTLYKTQAH--ELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEE 501
Q +Y+ +++ E I +++++ +L H L+ D EE
Sbjct: 275 QKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDEL-------EE 327
Query: 502 TVGELEKEKTMKELELKDLMAKHRSDLSSK-------ESLLSNGKEREVDYKKSIDQLMK 554
+ E E++ K LELK+ ++ ++ L + ++ + + VD + + +L
Sbjct: 328 IMDEF-NEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386
Query: 555 DREDLQQQINLLKEGKGAYGIVY 577
+ + + + + L + K GIV
Sbjct: 387 ELDKIVKTKSELVKEKYHRGIVT 409
Score = 34.6 bits (80), Expect = 0.38
Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 22/235 (9%)
Query: 792 KSKHEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGS 851
K+ + + +E + +++++ E L L M+++ + + +L A + S
Sbjct: 210 KNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS 269
Query: 852 ETASLSSADVENDESYVQDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIF-YNSEND 910
+ + G V Q I + + K++ +
Sbjct: 270 KIEQFQ-----KVIKMYEK----GGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDT 320
Query: 911 KQNTDPELELKDLMAKH-----RSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQ 965
+ E+ + ++ +S+ + L ++ K +I++L + D ++
Sbjct: 321 AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEE 380
Query: 966 INLLKEELRKSSN--SSEEMEKLHKQLKQEQL----LKAQAVNKLAEIMNRKDIN 1014
+ L++EL K S EK H+ + + L +KA + K N K IN
Sbjct: 381 LAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKASIIKKYIPYFN-KQIN 434
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 42.4 bits (100), Expect = 0.001
Identities = 22/97 (22%), Positives = 51/97 (52%)
Query: 30 ERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNES 89
E ERRE++ E+R ++L E E + + L+ E+ +L++ + L +L+ +R ++
Sbjct: 411 EEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKV 470
Query: 90 ETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAEL 126
++ + I + ++L+ + + L ++ AEL
Sbjct: 471 RKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507
Score = 35.5 bits (82), Expect = 0.20
Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 16/131 (12%)
Query: 22 NGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKES 81
N ELK LE +RE+ +LE + + + E+ ++ + L +L+E
Sbjct: 438 NSELKRELEELKREIEKLESELERFRREVRD----KVRKDREIRARDRRIERLEKELEEK 493
Query: 82 QRRAD------NESETKKKAE-----VNLQVISDMHEKLKTEAETATRLRKQSAELTVAK 130
++R + E +K E ++V+ + + EAE +++ L
Sbjct: 494 KKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVEDP 553
Query: 131 S-AGEQMVVEL 140
S G + EL
Sbjct: 554 SGGGARTAEEL 564
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 42.3 bits (99), Expect = 0.001
Identities = 63/325 (19%), Positives = 128/325 (39%), Gaps = 29/325 (8%)
Query: 25 LKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRR 84
L++ LE +RE + L ++ L + +R + QLE L +E + +
Sbjct: 141 LQNQLEGCQRERNDLMKKFLALEGDV-------SDMRSRIEQLETALRHSTEKTEELEEQ 193
Query: 85 ADNESETKKKAEVNLQVISDMHEKLKTEAETATR---LRKQSAELTVAKSAGEQMVVELQ 141
+ + ++ + L AE R L + LT K ++++ Q
Sbjct: 194 HKEAQSSSESM------SAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQ 247
Query: 142 NILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHREL 201
+I A LE + L+Q + + + E + + +++L L+ L LE ++ +
Sbjct: 248 DIEAELERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAG 307
Query: 202 QLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASL 261
L E+ LG ++ + L+ + LQL++ N L E S +E +L
Sbjct: 308 LLGEELASLGSL-----RDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETL 362
Query: 262 SLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSN 321
++A+A + + E K EE E + + L + + LS
Sbjct: 363 ---RQSAEADKDRIQKLSAELLK-----LEEWLQEERSQREKLEVELGIEKDCNRVQLSE 414
Query: 322 GKEREVDYKKSIDQLMKDREDLQQQ 346
+ + + ++ L K++E LQ++
Sbjct: 415 NRRELSELRSALRVLQKEKEQLQEE 439
Score = 37.7 bits (87), Expect = 0.043
Identities = 82/378 (21%), Positives = 156/378 (41%), Gaps = 36/378 (9%)
Query: 144 LATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQL 203
L TLE E D + +A I Q + Q +L + AL ++ + R QL
Sbjct: 119 LVTLEKEDDGDDLLLVVPKATILQNQLEGCQ--RERNDLMKKFLALEGDVSDMRSRIEQL 176
Query: 204 AEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSL 263
RH EK LE++ + +A ++ + R LA+ + +++ LE++ +L+
Sbjct: 177 ETALRHSTEKTEELEEQHK-EAQSSSESMSAERNALLAQRAENQ-QRILELEQDIQTLT- 233
Query: 264 ELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGK 323
Q +QE E + E E+ + LK + + R + + +
Sbjct: 234 -------QKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTIQRRDEETER-------- 278
Query: 324 EREVDYKKSIDQLMKDREDLQQQINLLKEGAE-LRQELEKSKTLQSQVEQEQAKKFSLQS 382
+D + +QL +D LQ+++ ++ A L +EL +L+ E + +
Sbjct: 279 ---IDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLRDHTIAELHQSRLESA 335
Query: 383 DLSVQTSEAA-HLKAREEQLSHEVAMLR---EAKR----NIEEEYHKLKTKRSVEDLQMK 434
+S+Q S+ LK + Q + E LR EA + + E KL+ E Q +
Sbjct: 336 QMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLKLEEWLQEERSQRE 395
Query: 435 ELQDQLETE----QYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARAD 490
+L+ +L E + + + + EL+ L + +L+EE+ +L +++ R D
Sbjct: 396 KLEVELGIEKDCNRVQLSENRRELSELRSALRVLQKEKEQLQEEKQELLDYIRVLELRLD 455
Query: 491 SEALARSIAEETVGELEK 508
EA + + E K
Sbjct: 456 KEADEKWAEDAATCEDAK 473
Score = 34.6 bits (79), Expect = 0.33
Identities = 56/280 (20%), Positives = 120/280 (42%), Gaps = 32/280 (11%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKE-SQ 82
+L+ L + +LEE+ ++ E++SA AL + + ++ + L D++ +Q
Sbjct: 175 QLETALRHSTEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQ 234
Query: 83 RRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQN 142
++ +N+ + ++ E + + E RL+K + + ++ + +E +
Sbjct: 235 KKQENDRVLEGTQDIEA-------ELERMKGELKQRLKKMTIQRRDEETERIDLQLENEQ 287
Query: 143 ILATLEMERDTL---QQEVATLQAKISQERSSKTQAV-NLHK------ELEGRLQALNTE 192
+ L ++ L QQ+ L +++ S + + LH+ ++ +L LN
Sbjct: 288 LHEDLRTLQERLESSQQKAGLLGEELASLGSLRDHTIAELHQSRLESAQMSLQLSQLNLA 347
Query: 193 LERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVS 252
L+ + + Q E R E +K+ R+Q L+ EL + LQ R E
Sbjct: 348 LKEGQSQWAQERETLRQSAE----ADKD-RIQKLSAELLK-LEEWLQEERSQREKLEVEL 401
Query: 253 SLEKECASLSL--------ELKAAQAQYQQEVRAHEETQK 284
+EK+C + L EL++A Q+E +E ++
Sbjct: 402 GIEKDCNRVQLSENRRELSELRSALRVLQKEKEQLQEEKQ 441
Score = 33.4 bits (76), Expect = 0.75
Identities = 35/182 (19%), Positives = 81/182 (44%), Gaps = 12/182 (6%)
Query: 935 ESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQ 994
++ L + D K L D D++ +I L+ LR S+ +EE+E+ HK+ +
Sbjct: 142 QNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSS 201
Query: 995 LLKAQAVNKLAEIMNRKDINTTCKGKS-KASSADVRKKEKECRKLQQELTQEREKFNQVV 1053
++++ + + + + + +K++E ++ + + ++
Sbjct: 202 ----ESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMK 257
Query: 1054 VKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAA-------LGSETASLS 1106
+ ++ L+++ Q +E T ++ LQ+E + ++ LQ +L + LG E ASL
Sbjct: 258 GELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLG 317
Query: 1107 SA 1108
S
Sbjct: 318 SL 319
Score = 32.3 bits (73), Expect = 2.1
Identities = 49/249 (19%), Positives = 106/249 (42%), Gaps = 13/249 (5%)
Query: 10 QVDNAIPNGGQANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEK 69
+++ I Q E +LE + ++LE + +L ++ + ++ + E L+
Sbjct: 224 ELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTIQRRDEETERIDLQL 283
Query: 70 NLTILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVA 129
L DL+ Q R +++KA + + ++ + + R +SA++++
Sbjct: 284 ENEQLHEDLRTLQERL---ESSQQKAGLLGEELASLGSLRDHTIAELHQSRLESAQMSLQ 340
Query: 130 KSAGEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQAL 189
S Q+ + L+ + ER+TL+Q + +I + + + +E + + L
Sbjct: 341 LS---QLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLKLEEWLQEERSQREKL 397
Query: 190 NTELERNKH-RELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLG 248
EL K +QL+E+ R L E S+ L+ L E E+ + + +L + R L
Sbjct: 398 EVELGIEKDCNRVQLSENRRELSELRSA------LRVLQKEKEQLQEEKQELLDYIRVLE 451
Query: 249 EKVSSLEKE 257
++ E
Sbjct: 452 LRLDKEADE 460
Score = 31.5 bits (71), Expect = 3.4
Identities = 57/305 (18%), Positives = 110/305 (36%), Gaps = 24/305 (7%)
Query: 238 LQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSR-MVNKEEAS-V 295
L L D + ++ LE + + + + Q+++ + E R + + A
Sbjct: 160 LALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQ 219
Query: 296 EIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAE 355
+ + EL+ + + +L ++ E + +R + + L K +
Sbjct: 220 QRILELEQDIQTLTQKKQENDRVLEGTQDIEAE---------LERMKGELKQRLKKMTIQ 270
Query: 356 LRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNI 415
R E + LQ + EQ +LQ L +A L E+A L + +
Sbjct: 271 RRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLG-------EELASLGSLRDHT 323
Query: 416 EEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEER 475
E H+ + + + LQ+ +L L+ Q S + + L++ + I +L E
Sbjct: 324 IAELHQSRLESAQMSLQLSQLNLALKEGQ--SQWAQERE-TLRQSAEADKDRIQKLSAEL 380
Query: 476 GDLTHRLQLAVARADSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLL 535
L LQ R+ E L + E + + EL +L + R KE L
Sbjct: 381 LKLEEWLQ--EERSQREKLEVELGIEKDCNRVQLSENRR-ELSELRSALRVLQKEKEQLQ 437
Query: 536 SNGKE 540
+E
Sbjct: 438 EEKQE 442
>gnl|CDD|241276 cd01243, PH_MRCK, MRCK (myotonic dystrophy-related Cdc42-binding
kinase) pleckstrin homology (PH) domain. MRCK is
thought to be coincidence detector of signaling by Cdc42
and phosphoinositides. It has been shown to promote
cytoskeletal reorganization, which affects many
biological processes. There are 2 members of this
family: MRCKalpha and MRCKbeta. MRCK consists of a
serine/threonine kinase domain, a cysteine rich (C1)
region, a PH domain and a p21 binding motif. The MRCK PH
domain is responsible for its targeting to cell to cell
junctions. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 136
Score = 39.6 bits (93), Expect = 0.002
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 874 EGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDKQNTDP 916
EG+V +P +K+ GW++Q+ VV K+ Y+ DK N P
Sbjct: 15 EGYVKVPKPGGVKK-GWQRQFAVVCDFKLFLYDISEDK-NPQP 55
Score = 30.3 bits (69), Expect = 2.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 1119 DEVRSRSVTQGDVIRADAKDIPRIF 1143
+E SV + DVI A+ KDIP IF
Sbjct: 68 EEFSVSSVLESDVIHANKKDIPCIF 92
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 42.3 bits (99), Expect = 0.002
Identities = 53/351 (15%), Positives = 121/351 (34%), Gaps = 31/351 (8%)
Query: 132 AGEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNT 191
GEQ +L+ + + + +++ A+L+ ++ + + S L +
Sbjct: 532 RGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQS-----------FSILTQCDN 580
Query: 192 ELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKV 251
+ + + + L EK+S E L R E L + HL +
Sbjct: 581 RSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC--EQHALLRKLQPEQDLQDVRLHLQQCS 638
Query: 252 SSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSD 311
L + +L + +E ++ + +++ ++ K+ + +
Sbjct: 639 QELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEM 698
Query: 312 LSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVE 371
L+ ++LL + +Y DRE + + G++L + ++
Sbjct: 699 LAQCQTLLRELETHIEEY---------DREFNEIENASSSLGSDLAAREDALNQSLKELM 749
Query: 372 QEQAKKFSLQSDLSVQTSEAA-HLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSV-- 428
+ +++ +E +LSH A ++ R EE+ H LKT +
Sbjct: 750 HQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG 809
Query: 429 ----EDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEER 475
D + LQ + ++ ++ E L E + +L+ EE
Sbjct: 810 QEIPSDEDILNLQCETLVQEEEQF--LSRLEEKSATLGEITHQLLKYEECS 858
Score = 40.7 bits (95), Expect = 0.005
Identities = 65/378 (17%), Positives = 123/378 (32%), Gaps = 31/378 (8%)
Query: 27 DLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHD---LKESQR 83
D R M + E+ QL E V + T+ R + L++ + ++ L +
Sbjct: 521 DNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDN 580
Query: 84 RADNESETKKKAEVNLQVISDM---HEKLKTEAETATRLRKQSAELTVAKSAGEQMVV-E 139
R+ + + V LQ +++ E + + A + Q + Q E
Sbjct: 581 RSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQE 640
Query: 140 LQNILATLEMERDTLQQEVATLQAKIS--QERSSKTQAVNLHKELEGRLQALNTELERNK 197
L L L + TL QE A + ++++ + L E
Sbjct: 641 LALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLA 700
Query: 198 HRELQLAEDNRHLGEKVSSLEKECR-LQALNTELERNKHRELQLAEDNRHLG-EKVSSLE 255
+ L E H+ E + +L ++L + Q ++ H + +
Sbjct: 701 QCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKART 760
Query: 256 KECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSK 315
+ + + E+ AA + E Q E LK L A+ ++ S
Sbjct: 761 EAHFNNNEEVTAALQTGAELSHLAAEIQ-----FFNRLREEDTHLLKTLEAEIGQEIPSD 815
Query: 316 ESLLSNGKEREVDYKKSID---------------QLMKDREDLQQQINLLKEGAELRQEL 360
E +L+ E V ++ QL+K E +Q L +E A++ Q
Sbjct: 816 EDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
Query: 361 EKSKTLQSQVEQEQAKKF 378
+K + Q
Sbjct: 876 DKLNGINQIKIQFDGDAL 893
Score = 40.0 bits (93), Expect = 0.009
Identities = 53/378 (14%), Positives = 127/378 (33%), Gaps = 31/378 (8%)
Query: 10 QVDNAIPNGGQANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEK 69
+ + + ++ L ER++ + L+E+ +++ + + ++ + ++++ L+
Sbjct: 532 RGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQN 591
Query: 70 NLTILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVA 129
L+ ++ D + + LQ D+ +
Sbjct: 592 ITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHL----------------- 634
Query: 130 KSAGEQMVVELQNILATLEMERDTLQQEVATLQAKIS--QERSSKTQAVNLHKELEGRLQ 187
+Q EL L L + TL QE A + ++++ +
Sbjct: 635 ----QQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKE 690
Query: 188 ALNTELERNKHRELQLAEDNRHLGEKVSSLEKECR-LQALNTELERNKHRELQLAEDNRH 246
L E + L E H+ E + +L ++L + Q ++ H
Sbjct: 691 QLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH 750
Query: 247 LG-EKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLM 305
+ + + + + E+ AA + E Q E LK L
Sbjct: 751 QARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQ-----FFNRLREEDTHLLKTLE 805
Query: 306 AKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQIN-LLKEGAELRQELEKSK 364
A+ ++ S E +L+ E V ++ ++++ +I L + E ++L +
Sbjct: 806 AEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLT 865
Query: 365 TLQSQVEQEQAKKFSLQS 382
Q+++ Q K +
Sbjct: 866 QEQAKIIQLSDKLNGINQ 883
Score = 37.3 bits (86), Expect = 0.065
Identities = 87/581 (14%), Positives = 198/581 (34%), Gaps = 46/581 (7%)
Query: 29 LERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEK------NLTILRHDLKESQ 82
L ++ Q Q E E ++ L+ ++E+ L + + ++
Sbjct: 231 LREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRAR 290
Query: 83 RRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQN 142
+ A + K ++ Q +H +L+++ + +L + A +S+ E+ LQ
Sbjct: 291 KAAPLAAHIKAVTQIEQQ-AQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT 349
Query: 143 ILATLEMERD-----TLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNK 197
+ + RD T +E++ Q ++Q + Q + L L+R +
Sbjct: 350 LHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQ 409
Query: 198 HRELQLAEDNRHLGEKVSSLEKECRLQALNTEL-----------ERNKHRELQ-----LA 241
R L +++ +K+ LQ EL E+ + LQ L
Sbjct: 410 ATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLK 469
Query: 242 EDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEV----RAHEETQKSRMVNKEEASVEI 297
E + L K +E ++ L ++ + ++
Sbjct: 470 EREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRR 529
Query: 298 VKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAE-L 356
++ + A+ + L++ +++ K+ + ++ + L Q N KE L
Sbjct: 530 MQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNL 589
Query: 357 RQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAH---LKAREEQLSHEVAMLREAKR 413
+ + + L ++ + + Q L + ++ +Q S E+A+ A
Sbjct: 590 QNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALH 649
Query: 414 NIEEEYHKLKTK---RSVEDLQMKELQDQLETEQYFSTLYK--TQAHELKEELDERSRNI 468
++ + + + S+ L + L + Q + + T E+ + R +
Sbjct: 650 ALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLREL 709
Query: 469 LELEEERGDLTHRLQLAVARADSEALAR-SIAEETVGELEKEKTMKELELKDLMAKHRSD 527
EE + ++ A + S+ AR +++ EL + LK H ++
Sbjct: 710 ETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV---LKARTEAHFNN 766
Query: 528 LSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKE 568
+ L G E I + RE+ + L+
Sbjct: 767 NEEVTAALQTGAELS-HLAAEIQFFNRLREEDTHLLKTLEA 806
Score = 36.1 bits (83), Expect = 0.14
Identities = 65/392 (16%), Positives = 133/392 (33%), Gaps = 30/392 (7%)
Query: 41 ERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESETKKKAEVNLQ 100
RQ + ++ R QLE + + H L +++ + E ++ + +
Sbjct: 514 NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFS 573
Query: 101 VISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVAT 160
+++ + K + + + +LT S E M+ Q+ L +++ + Q+V
Sbjct: 574 ILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHAL-LRKLQPEQDLQDVRL 632
Query: 161 LQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKE 220
+ SQE + K A LH Q ER + L + + L ++
Sbjct: 633 HLQQCSQELALKLTA--LHALQLTLTQ------ERVREHALSIRVLPKELLASRQLALQK 684
Query: 221 CRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHE 280
+Q+ +L K Q R L + ++E + + + A
Sbjct: 685 --MQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALN 742
Query: 281 ETQKSRM-----VNKEEASVEIVKELKDLMAKHRSDLSS--KESLLSNGKEREVDY---- 329
++ K M V K + A S + + RE D
Sbjct: 743 QSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK 802
Query: 330 --KKSIDQLMKDRED--LQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLS 385
+ I Q + ED Q L++E + LE+ ++ + K + S
Sbjct: 803 TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK----YEECS 858
Query: 386 VQTSEAAHLKAREEQLSHEVAMLREAKRNIEE 417
Q ++ +A+ QLS ++ + + K +
Sbjct: 859 KQLAQLTQEQAKIIQLSDKLNGINQIKIQFDG 890
Score = 34.9 bits (80), Expect = 0.31
Identities = 77/444 (17%), Positives = 138/444 (31%), Gaps = 47/444 (10%)
Query: 164 KISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRL 223
+ Q K L G+ + L + L E+ LEKE L
Sbjct: 174 PLDQYTQLALMEFAKKKSLHGKAELLTLRSQL---LTLCTPCMPDTYHERKQVLEKE--L 228
Query: 224 QALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQ 283
+ L L++ + L + E+ ++ L ++ +AQ E
Sbjct: 229 KHLREALQQTQQSHAYLTQKREAQEEQ-LKKQQLLKQLRARIEELRAQEAVLEETQERIN 287
Query: 284 KSRMVNK-----------EEASVEIVKELKDLM-------------AKHRSDLSSKESLL 319
++R E+ + I EL+ M K +S + + LL
Sbjct: 288 RARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLL 347
Query: 320 SNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEK-------SKTLQSQVEQ 372
+E+ + + + RE QQ L + L+Q+ +++
Sbjct: 348 QTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQR 407
Query: 373 EQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQ 432
EQA + S + AH K +++L A L A + KL+ E Q
Sbjct: 408 EQATIDTRTSAFRDLQGQLAHAKK-QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQ 466
Query: 433 -MKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEE-ERGDLTHRLQLAVARAD 490
+KE + QL+T++ + + L E L R +
Sbjct: 467 SLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPL 526
Query: 491 SEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLL----SNGKEREVDYK 546
+ + R E +E +L K R+ L + + S + + K
Sbjct: 527 TRRMQRGEQTYAQLETSEEDVYHQL---TSERKQRASLKEQMQEIQQSFSILTQCDNRSK 583
Query: 547 KSIDQLMKDREDLQQQINLLKEGK 570
+ I L LQ L E +
Sbjct: 584 EDIPNLQNITVRLQDLTEKLSEAE 607
Score = 29.9 bits (67), Expect = 9.8
Identities = 41/273 (15%), Positives = 98/273 (35%), Gaps = 9/273 (3%)
Query: 793 SKHEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSE 852
+ HER++ + +K +E + Q T K + Q E K ++QL+ ++ L ++
Sbjct: 216 TYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQ 275
Query: 853 TASLSSADVENDES-YVQDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDK 911
A L + + +Q +R + Q + S K++ + + K
Sbjct: 276 EAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
Query: 912 QNTDPELELKDLMAKHRS-----DLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQI 966
Q + E + + L H D + + ++ + I L + + L Q++
Sbjct: 336 QQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKL 395
Query: 967 NLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSA 1026
L +EL E + + + L+ Q + + ++ C ++
Sbjct: 396 QSLCKELDILQR---EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQ 452
Query: 1027 DVRKKEKECRKLQQELTQEREKFNQVVVKCQKE 1059
+ ++ ++ Q L + ++ +E
Sbjct: 453 CEKLEKIHLQESAQSLKEREQQLQTKEQIHLQE 485
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 41.5 bits (98), Expect = 0.003
Identities = 50/274 (18%), Positives = 97/274 (35%), Gaps = 47/274 (17%)
Query: 296 EIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKE--- 352
E+++ L +L H DL + S K L L + ++ L+
Sbjct: 20 EVLEALHELGVVHIEDLKEELSNERLRK------------LRSLLTKLSEALDKLRSYLP 67
Query: 353 ----GAELRQELEKSKTLQSQVEQEQAKKFS-LQSDLSVQTSEAAHLKAREEQLSHEVAM 407
E ++++ ++ ++ ++ ++ ++ E + L+ ++L E
Sbjct: 68 KLNPLREEKKKVSVKSL--EELIKDVEEELEKIEKEIKELEEEISELENEIKELEQE--- 122
Query: 408 LREAK--RNIEEEYHKLKTKRSVE------DLQMKELQDQLETEQYFSTLYKTQAHE--- 456
+ + N + + L + V E + + + +
Sbjct: 123 IERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVV 182
Query: 457 ---LKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKEKTMK 513
LKE DE + +L ER L+L SE + R I EE + E+EKE+
Sbjct: 183 VVVLKELSDEVEEELKKLGFER------LELEEEGTPSELI-REIKEE-LEEIEKERESL 234
Query: 514 ELELKDLMAKHRSDLSSKESLLSNGKEREVDYKK 547
ELK+L K+ +L + L ER K
Sbjct: 235 LEELKELAKKYLEELLALYEYLEIELERAEALSK 268
Score = 39.9 bits (94), Expect = 0.008
Identities = 38/207 (18%), Positives = 83/207 (40%), Gaps = 26/207 (12%)
Query: 809 KELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSS-ADVENDESY 867
K L+EL V EE K++ E+ + EI +L+ ++ L E L + + D S
Sbjct: 82 KSLEELIKDVEEE---LEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSL 138
Query: 868 VQDSRL----EGWVSIPNKQNIKRHGWKKQYVVVSSKK----IIFYNSENDKQNTDPELE 919
+ + G V + +K + +S+ K ++ + + EL+
Sbjct: 139 LLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELK 198
Query: 920 LKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNS 979
+ L G E+ I ++ ++ E+++++ L EEL++ +
Sbjct: 199 KLGF---------ERLELEEEGTPSEL-----IREIKEELEEIEKERESLLEELKELAKK 244
Query: 980 SEEMEKLHKQLKQEQLLKAQAVNKLAE 1006
E + + +L +A+A++K +
Sbjct: 245 YLEELLALYEYLEIELERAEALSKFLK 271
Score = 31.1 bits (71), Expect = 4.1
Identities = 51/269 (18%), Positives = 96/269 (35%), Gaps = 38/269 (14%)
Query: 59 ALRDEMGQLEKNLTILR-------HDLKESQRRADNESETKKKAEVN--LQVISDMHEKL 109
L+ ++ L L DLKE +++ L + KL
Sbjct: 13 TLKSYKDEV---LEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKL 69
Query: 110 KTEAETATRLRKQSAELTVAKSAG-----EQMVVELQNILATLEMERDTLQQEVATLQ-- 162
E ++ +S E + E+ + EL+ ++ LE E L+QE+ L+
Sbjct: 70 NPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPW 129
Query: 163 ----AKISQERSSKT---QAVNLHKELEGRLQALNT-----ELERNKHRELQLAEDNRHL 210
+S K + ++ L+ + + +K + + L
Sbjct: 130 GNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKEL 189
Query: 211 GEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQA 270
++V K+ + L E E +E R + E++ +EKE SL ELK
Sbjct: 190 SDEVEEELKKLGFERLELEEEGT------PSELIREIKEELEEIEKERESLLEELKELAK 243
Query: 271 QYQQEVRAHEETQKSRMVNKEEASVEIVK 299
+Y +E+ A E + + EA + +K
Sbjct: 244 KYLEELLALYE-YLEIELERAEALSKFLK 271
>gnl|CDD|197519 smart00109, C1, Protein kinase C conserved region 1 (C1) domains
(Cysteine-rich domains). Some bind phorbol esters and
diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Length = 50
Score = 36.3 bits (84), Expect = 0.004
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 1182 HEFLNISYHMPTTCEVCPKPIWHIIRPPPALEC 1214
H+ + ++ PT C VC K IW L C
Sbjct: 1 HKHVFRTFTKPTFCCVCRKSIWGS--FKQGLRC 31
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 41.2 bits (97), Expect = 0.004
Identities = 71/387 (18%), Positives = 156/387 (40%), Gaps = 60/387 (15%)
Query: 152 DTLQQEVATLQAKISQERSSKTQAVNLHK--ELEGRLQALNTELE----RNKHRELQLAE 205
D + + L + + + S+ + L + LE L+ + + E H +L E
Sbjct: 182 DLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEE 241
Query: 206 DNRHLGEKVSSLEKECRLQ--ALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSL 263
R + SLEK+ R + L E E+ + + ++ + ++ L + L L
Sbjct: 242 AQR----SLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLL 297
Query: 264 ELKAAQAQYQQEVRAHEETQKSRMVNK--EEASVEIVKELKDLM--AKHRSDLSSK--ES 317
+ + +++ E++Q++++ + EE E+++ L L A+H +++++ E
Sbjct: 298 -IPNLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEI 356
Query: 318 LLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKK 377
+ E+ ++ S +L Q+ +L + + + KS+ L+ E E+
Sbjct: 357 DKPATTDSEIPHRLSGSEL--------TQLEVLIQQVKRELQDAKSQLLKELRELEEELA 408
Query: 378 FSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQ 437
+ D + T + EEQ++ L E + E + + + Q++ L+
Sbjct: 409 ---EVDKKISTIPS------EEQIAQ----LLEELGEAQNELFRSEAEIEELLRQLETLK 455
Query: 438 DQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARS 497
+ +E L++ LDE+++ + E +T A+ +
Sbjct: 456 EAIE--------------ALRKTLDEKTKQKINAFELERAITI---ADKAKKTLKEFREK 498
Query: 498 IAEETVGELEKEKTMKELELKDLMAKH 524
+ E + +LE+E T K LM KH
Sbjct: 499 LLERKLQQLEEEITK---SFKKLMRKH 522
Score = 34.7 bits (80), Expect = 0.39
Identities = 64/358 (17%), Positives = 131/358 (36%), Gaps = 62/358 (17%)
Query: 23 GELKDLLERERR---------EMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTI 73
G+L ++L R ++ E+ LE ++ SE+YE ++ LR+E+ + +++L
Sbjct: 189 GDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLES 248
Query: 74 LRHDLKES-----QRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTV 128
L + + R E + K+ K L L +
Sbjct: 249 LEKKFRSEGGDLFEEREQLERQLKEI-----------EAARKANRAQLRELAADPLPLLL 297
Query: 129 AKSAGEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLH-KELEGRLQ 187
+ + +LQ + +++ L QE + K E K H KE+ L
Sbjct: 298 IPNLLDSTKAQLQK---EEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELA 354
Query: 188 ALNTELERNKHRELQLAEDNR----HLGEKVSSLEKECRLQALNTELERNKHRELQLAED 243
++ + +L+ L ++V E + L EL E +LAE
Sbjct: 355 EIDKPATTDSEIPHRLSGSELTQLEVLIQQVKR-ELQDAKSQLLKELREL---EEELAEV 410
Query: 244 NRHLG-----EKVSSLEKECASLSLELKAAQAQYQQEVRAHEE---------------TQ 283
++ + E+++ L +E EL ++A+ ++ +R E T+
Sbjct: 411 DKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTK 470
Query: 284 KSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDRE 341
+ + E ++ I + K + + R + L ++ E + KS +LM+
Sbjct: 471 QKINAFELERAITIADKAKKTLKEFRE-----KLLERKLQQLEEEITKSFKKLMRKHN 523
>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein
Tyrosine Kinases, Apoptosis-associated tyrosine kinases
1 and 3. Protein Tyrosine Kinase (PTK) family;
Apoptosis-associated tyrosine kinase 1 (Aatyk1) and
Aatyk3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Aatyk1 and Aatyk3 are
members of the Aatyk subfamily of proteins. Aatyk3 is a
receptor kinase containing a transmembrane segment and a
long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk1 has a similar domain arrangement but
without the transmembrane segment and is thus, a
cytoplasmic (or nonreceptor) kinase. The expression of
Aatyk1 (also referred simply as Aatyk) is upregulated
during growth arrest and apoptosis in myeloid cells.
Aatyk1 has been implicated in neural differentiation,
and is a regulator of the Na-K-2Cl cotransporter, a
membrane protein involved in cell proliferation and
survival, epithelial transport, and blood pressure
control. The function of Aatyk3 is still unknown.
Length = 269
Score = 40.3 bits (94), Expect = 0.004
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 24/137 (17%)
Query: 672 GLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTE---YIATRWYRA 728
GL ++H +H DL N L+ ++KIGD GL+ + +T ++ RW A
Sbjct: 112 GLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWI-A 170
Query: 729 PE--------ILISNRRYTHHVDIWSLGCILAEMLQ--SKPLFPGASTSHQLQLIV---N 775
PE +L+ ++ T ++WSLG + E+ + S+P + S L V
Sbjct: 171 PELVDEVHGNLLVVDQ--TKESNVWSLGVTIWELFELGSQP-YRHLSDEQVLTYTVREQQ 227
Query: 776 LVRPNP----PHADKFY 788
L P P P +D++Y
Sbjct: 228 LKLPKPRLKLPLSDRWY 244
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 40.8 bits (96), Expect = 0.005
Identities = 33/178 (18%), Positives = 75/178 (42%), Gaps = 8/178 (4%)
Query: 919 ELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSN 978
EL + + + S E +D +K + D E+L+ + L+E L K+
Sbjct: 282 ELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEALEEILEKNLQ 341
Query: 979 SSEE-MEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRK 1037
EE ++ ++ E + + + +I++ IN + ++ ++K K +K
Sbjct: 342 KLEEKLKDPSTSIELESI--TDLIESINDIIDA--INELIREHNEKIDNLKKEKNKAKKK 397
Query: 1038 LQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKL 1095
L + + + QKE + L+ + +L+ E+ + + EI++L+ +L
Sbjct: 398 LWLH---LVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQL 452
Score = 35.0 bits (81), Expect = 0.28
Identities = 60/375 (16%), Positives = 131/375 (34%), Gaps = 64/375 (17%)
Query: 138 VELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKE------LEGRLQALNT 191
+E++ + L+ E L++++ L+A+I ++ +A N + + L+
Sbjct: 91 IEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSE 150
Query: 192 ELERNKHRELQLAEDNRHLG----EKVSSLEKECRLQALNTELERNKHR---------EL 238
L+ +++ + + L S L E + T NK +
Sbjct: 151 ALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELALLTLSVIDF 210
Query: 239 QLAEDNRHLGEK-VSSLEKECASLSLELKAAQ-----AQY----------QQEVRAHEET 282
E L + + S + + L L + +Y QQ + +
Sbjct: 211 DEIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGDTCPFCQQTITEERKA 270
Query: 283 QKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDRED 342
+ ++E +EL + + + S E +D +K + D E+
Sbjct: 271 ELEAHFDEE------YQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEE 324
Query: 343 LQQQINLLKEGAE-LRQELE-KSKTLQSQVEQE--QAKKFSLQSDLS------------V 386
L+ + L+E E Q+LE K K + +E E S+ + +
Sbjct: 325 LKALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKI 384
Query: 387 QTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYF 446
+ KA+++ H VA L+E ++E L+ L+ +++ +
Sbjct: 385 DNLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAI-------NSLEKEIKQLEAE 437
Query: 447 STLYKTQAHELKEEL 461
+ + EL+++L
Sbjct: 438 IKALEKEIKELEKQL 452
Score = 34.2 bits (79), Expect = 0.45
Identities = 28/170 (16%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 947 DYKKSIDQLMKDREDLQQQINLLKEELRKSSNSS---EEMEKLHKQLKQEQLLKAQAVNK 1003
+Y++ I+QL + + + I EEL ++ E + ++LK + + K
Sbjct: 279 EYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEALEEILEK 338
Query: 1004 LAEIMN--RKDINTTCKGKSKASSAD------------VRKKEKECRKLQQELTQEREKF 1049
+ + KD +T+ + +S + +R+ ++ L++E + ++K
Sbjct: 339 NLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKKEKNKAKKKL 398
Query: 1050 NQ-VVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAAL 1098
+V + ++++ Q + + L+ E+ ++EI+ L+ ++ L
Sbjct: 399 WLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKEL 448
Score = 32.3 bits (74), Expect = 1.9
Identities = 70/403 (17%), Positives = 144/403 (35%), Gaps = 65/403 (16%)
Query: 247 LGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASV----------E 296
LGE+ +E + L ELK + + +Q E +K + K + +
Sbjct: 86 LGEENIEIEAQIEELKKELKKLEEKIEQ--LEAEIEKKEEELEKAKNKFLDKAWKKLAKK 143
Query: 297 IVKELKDLMAKHRSDLSSKESLLSNGKEREVDYK--KSIDQLMKD----REDLQQQINLL 350
L + + + KE LL K ++ S+++L + ++ LL
Sbjct: 144 YDSNLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELALL 203
Query: 351 KEGAELRQELEKSKTLQSQVEQEQAKKFS-LQSDLSVQT--SEAAHL------------- 394
E+E+++ L+ + S L ++L E
Sbjct: 204 TLSVIDFDEIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGDTCPFCQQT 263
Query: 395 --KAREEQL-SHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYK 451
+ R+ +L +H +E +EE K ++ +++ + E E L
Sbjct: 264 ITEERKAELEAHFDEEYQELIEQLEELIDKYESHIEKALEELESI-LDTEKENSEFKLDV 322
Query: 452 TQAHELKEELDER-SRNILELEEERGDLTHRLQLAVARADSEALARSI--AEETVGELEK 508
+ L E L+E +N+ +LEE+ D + ++L E++ I E + E +
Sbjct: 323 EELKALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNE 382
Query: 509 EKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKE 568
+ + E K L ++ K+ ID K+++ L++ IN L++
Sbjct: 383 KIDNLKKEKNKAKKKLWLHLVAE-------------LKEDIDAYQKEKKGLEKAINSLEK 429
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKKIFEAFRNK-TDAQRTYREI 610
+ + A++K + + T+ + T EI
Sbjct: 430 EI----------KQLEAEIKALEKEIKELEKQLTNIEPTADEI 462
>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional.
Length = 283
Score = 40.1 bits (94), Expect = 0.005
Identities = 45/220 (20%), Positives = 89/220 (40%), Gaps = 35/220 (15%)
Query: 570 KGAYG---IVYKAYDKNNKQYVAIKKIFEAFRNKTDAQRTYREILFLKSFQRHPNIITML 626
KG + ++ + + K +K + + I E EI L+ + NI+ +
Sbjct: 38 KGIFNNKEVIIRTFKKFHKGHKVLIDITE------------NEIKNLRRIDSN-NILKIY 84
Query: 627 DIYKAVNNK--DLYVVFEYMENDLNKVIRDKILKDVHIRY-----IMFQLCNGLSYIHA- 678
+ + L ++ EY +R+ + K+ + + + C GL ++
Sbjct: 85 GFIIDIVDDLPRLSLILEYC---TRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKY 141
Query: 679 CKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKECLTEYIATRWYRAPEIL---ISN 735
+++L + L+ ++ +KI GL + LS ++ Y + ++L S
Sbjct: 142 TNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNFMV---YFSYKMLNDIFSE 198
Query: 736 RRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQLQLIVN 775
YT DI+SLG +L E+ K F +T LI+N
Sbjct: 199 --YTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIIN 236
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 40.3 bits (94), Expect = 0.007
Identities = 63/373 (16%), Positives = 136/373 (36%), Gaps = 44/373 (11%)
Query: 232 RNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKE 291
K + L +N + ++++ EK + E++ +Y + +N+
Sbjct: 189 EEKLKSSNLELEN--IKKQIADDEKSHSITLKEIERLSIEYN--NAMDDYNNLKSALNEL 244
Query: 292 EASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSI-DQLMKDREDLQQQINLL 350
+ ++ + + SDLS + + KE E + K I D + K+R +
Sbjct: 245 SSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYK 304
Query: 351 KEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLRE 410
+ +Q L ++ K LQ D ++ K+R + L++++ L
Sbjct: 305 NDIENKKQILSNIDAEINKYHAIIKKLSVLQKD----YNDYIKKKSRYDDLNNQILELEG 360
Query: 411 AKRNIE---EEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRN 467
+ + + LK K ++ + + + +K+EL+E +
Sbjct: 361 YEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEI---DPDAIKKELNEINVK 417
Query: 468 ILELEEERGDLTHRLQLAVARADSEALARSIA---------------------------E 500
+ ++ + L R++ R + + L+R++
Sbjct: 418 LQDISSKVSSLNQRIR--ALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYN 475
Query: 501 ETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQ 560
E LE++ E+E+KD+ K KE L S + ++ I+ D ED++
Sbjct: 476 EKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIK 535
Query: 561 QQINLLKEGKGAY 573
+IN LK+ Y
Sbjct: 536 IKINELKDKHDKY 548
Score = 33.0 bits (75), Expect = 1.1
Identities = 47/292 (16%), Positives = 107/292 (36%), Gaps = 22/292 (7%)
Query: 288 VNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQI 347
+N E + + +K++ D++ S++ E L + + KK I K ++I
Sbjct: 161 INSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEI 220
Query: 348 --------NLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREE 399
N + + L+ L + +L+ + +++ + +SDLS++ + + K EE
Sbjct: 221 ERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEE 280
Query: 400 QLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKE 459
+ + RN +Y K K + + + ++ +
Sbjct: 281 RHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYH--------AIIKKLS 332
Query: 460 ELDERSRNILELEEERGDLTH-RLQLAVARADSEALARSIAEETVGELEKEKTMKELELK 518
L + + ++ + DL + L+L D + +SI L+K+ ++
Sbjct: 333 VLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIE-----SLKKKIEEYSKNIE 387
Query: 519 DLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGK 570
+ A L +E K+ + + + L Q+I L+E
Sbjct: 388 RMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENL 439
Score = 33.0 bits (75), Expect = 1.3
Identities = 59/333 (17%), Positives = 123/333 (36%), Gaps = 24/333 (7%)
Query: 792 KSKHEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQM-ELDSKDSEIEQLQGKLAALG 850
K + EK + + +K + L + ++ + LK + EL S + + + ++
Sbjct: 204 KQIADDEKSHSITLKEIERLSI-EYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAE 262
Query: 851 SETASLSSADVENDESYVQDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSEND 910
S+ + + E + ++ N+ I + +K + + + K+I+
Sbjct: 263 SDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDY-FKYKNDIENKKQIL------- 314
Query: 911 KQNTDPELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQIN--- 967
N D E+ + K S L + K R D I +L D +
Sbjct: 315 -SNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIE 373
Query: 968 LLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRK--DINTTCKGKSKASS 1025
LK+++ + S + E M ++ + Q + A+ K +N K DI++ K SS
Sbjct: 374 SLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS------KVSS 427
Query: 1026 ADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEE--NTSKLKLQMELDS 1083
+ R + + E V C L E +S + N K +L+ ++
Sbjct: 428 LNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIRE 487
Query: 1084 KDSEIEQLQGKLAALGSETASLSSADVENDESY 1116
+ E++ + K+ L L S ++ +
Sbjct: 488 IEIEVKDIDEKIVDLKKRKEYLESEEINKSINE 520
Score = 32.6 bits (74), Expect = 1.7
Identities = 85/533 (15%), Positives = 199/533 (37%), Gaps = 79/533 (14%)
Query: 82 QRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQ 141
+R D + + I + EKLK+ ++KQ A+ + S + + L
Sbjct: 165 ERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLS 224
Query: 142 NILATLEMERDTLQQEVATLQA-------------KISQERSSKTQAVNLHKELEGRLQA 188
+ + L+ + L + + S + + N +KELE R
Sbjct: 225 IEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMK 284
Query: 189 L-NTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELER--NKHRELQLAEDNR 245
+ N + +N++ + + K L ++ E+ + ++L + + +
Sbjct: 285 IINDPVYKNRNYINDYFKYKNDIENKKQILSN------IDAEINKYHAIIKKLSVLQKDY 338
Query: 246 HLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLM 305
+ K S + + LEL+ + Y +++ E +K E K ++ +
Sbjct: 339 NDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIE--------EYSKNIERMS 390
Query: 306 AKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGA-ELRQEL---- 360
A L +E K+ + + + L Q+I L+E EL + +
Sbjct: 391 AFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN 450
Query: 361 --------------EKSKTLQSQVEQEQAKKFS----LQSDLSVQTSEAAHLKAREEQLS 402
EKS + + +++++ ++ ++ + LK R+E L
Sbjct: 451 GQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLE 510
Query: 403 HEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELD 462
E EY+K+++ R+ +++++ ++ + H+ EE+
Sbjct: 511 ------SEEINKSINEYNKIESARA----DLEDIKIKINELKD--------KHDKYEEIK 552
Query: 463 ERSRNI-LELEEERGDLTHRLQLAVARADSEALARSIAEETVGEL-EKEKTMKELEL--- 517
R +++ LE + + ++ D E RS + E +L + E ++E+E+
Sbjct: 553 NRYKSLKLEDLDSKRTSWLNALAVISLIDIETN-RSRSNEIKKQLNDLESRLQEIEIGFP 611
Query: 518 --KDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKE 568
K + K ++ ++ + L+N + K I++L ++ ++QI +
Sbjct: 612 DDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDS 664
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 40.4 bits (95), Expect = 0.007
Identities = 70/365 (19%), Positives = 135/365 (36%), Gaps = 58/365 (15%)
Query: 141 QNILATLEMERDTLQQEVAT-LQAKI-----------SQERSSKTQAVN----LHKELEG 184
+LA LE RD +AT +Q I + +R K Q + L + ++
Sbjct: 730 AGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDY 789
Query: 185 RLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKEC---RLQALNTELERNKHRELQLA 241
L+ + L ++ R + L+K + E+E + E+ +
Sbjct: 790 ELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQ 849
Query: 242 EDNRHLG--EKVSSLEKECASL--SLELKAAQAQYQQEVRAHEETQKSRMVNKEEASV-- 295
+ R L ++ S L+KE L + ++ A+ Q Q+ + ++VN E S
Sbjct: 850 KFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEII 909
Query: 296 EIVKELK-DLMAK--HRSDLSSK------ESLLSNGKEREVDYKKSIDQLMKDREDLQQQ 346
E+ K L DL+ +++L ++ L G E +++L + L++
Sbjct: 910 ELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKET 969
Query: 347 I----NLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLS 402
+LLK+ L +E K+ + ++E A+ L T + ++L
Sbjct: 970 SEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQL-------KELP 1022
Query: 403 HEVAMLREAKRNIEEEYHKLKTKRSVEDL-------------QMKELQDQLETEQYFSTL 449
EVA L+ A + I E +L + ++ L + K L+ + E
Sbjct: 1023 VEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQ 1082
Query: 450 YKTQA 454
Sbjct: 1083 LYQLE 1087
Score = 34.7 bits (80), Expect = 0.38
Identities = 106/580 (18%), Positives = 184/580 (31%), Gaps = 93/580 (16%)
Query: 33 RREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESET- 91
+ ++E +RQL E V ++L+ +LE + L+ L + E +T
Sbjct: 871 LQSAQRVELAERQLQELKIDVK-SISSLKLVNLELESEIIELKKSLSSD-LIENLEFKTE 928
Query: 92 --------KKKAEVNLQVISDMHE------------KLKTEAETATRLRKQSAELTVAKS 131
++ + + KLK +E L K+S L +
Sbjct: 929 LIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGN 988
Query: 132 AGEQMVVELQNILATLEMERDTLQQEVATL-------------QAKISQERSSKTQAVNL 178
+ + LA L + LQ+ L IS E + + L
Sbjct: 989 KANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPL 1048
Query: 179 HK----------ELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNT 228
K +L+ R +AL E + + QL + + K+ + N
Sbjct: 1049 QKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNL 1108
Query: 229 ELERNK---HRELQLAEDNRH-----LGEKVSSLEKECASLS---LELKAAQAQYQQEVR 277
N + + L + V++LE LS LEL + E
Sbjct: 1109 VKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEAL 1168
Query: 278 AH----------EETQKSRMVNKEEASVEIVKELKD----LMAKHRSDLSSKESLLSNGK 323
Q + K + S V +LK+ L +K S + L
Sbjct: 1169 PSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKL-- 1226
Query: 324 EREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKS----KTLQSQVEQEQAKKFS 379
E +K +L + + L L S +E+ +
Sbjct: 1227 ISEGWVPTEYSTSLKGFNNL-NKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPAT 1285
Query: 380 LQSDLSVQTSEAAH-LKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQD 438
+ S L + L+ + L + A E N EE + + D+ EL++
Sbjct: 1286 INSLLQYINVGLFNALRTKASSLRWKSA--TEVNYNSEELDDWCREFE-ISDVDE-ELEE 1341
Query: 439 QLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEA-LARS 497
++ + L L E LD ++ E + L R AD E L +
Sbjct: 1342 LIQAVKVLQLLKDDLNK-LDELLDAC-YSLNPAEIQN--LKSRYD----PADKENNLPKE 1393
Query: 498 IAEETVGELEKEKTMKELELKDLMAKHRSD-LSSKESLLS 536
I ++ L K++ LE KD H S+ S ++SL+S
Sbjct: 1394 ILKKIEALLIKQELQLSLEGKDETEVHLSEIFSEEKSLIS 1433
>gnl|CDD|237996 cd00029, C1, Protein kinase C conserved region 1 (C1) . Cysteine-rich
zinc binding domain. Some members of this domain family
bind phorbol esters and diacylglycerol, some are reported
to bind RasGTP. May occur in tandem arrangement.
Diacylglycerol (DAG) is a second messenger, released by
activation of Phospholipase D. Phorbol Esters (PE) can
act as analogues of DAG and mimic its downstream effects
in, for example, tumor promotion. Protein Kinases C are
activated by DAG/PE, this activation is mediated by their
N-terminal conserved region (C1). DAG/PE binding may be
phospholipid dependent. C1 domains may also mediate
DAG/PE signals in chimaerins (a family of Rac GTPase
activating proteins), RasGRPs (exchange factors for
Ras/Rap1), and Munc13 isoforms (scaffolding proteins
involved in exocytosis).
Length = 50
Score = 35.5 bits (82), Expect = 0.007
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 1182 HEFLNISYHMPTTCEVCPKPIWHIIRPPPALEC 1214
H F+ S+ PT C+VC K IW + L C
Sbjct: 1 HRFVRKSFFKPTFCDVCRKSIWGL--FKQGLRC 31
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 39.9 bits (94), Expect = 0.008
Identities = 31/137 (22%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 343 LQQQINLLKEGAELRQEL-EKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQL 401
L+ + + K AEL +EL E+ LQ + ++ +L + + +L+ +E++L
Sbjct: 54 LEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKEL 113
Query: 402 SHEVAMLREAKRNIEEEYHKLK---------TKRSVEDLQMKELQDQLETEQYFSTLYKT 452
S++ L E + +EE + + T+ +++ ++E++++ E + L K
Sbjct: 114 SNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEA--AKLIKE 171
Query: 453 QAHELKEELDERSRNIL 469
E KEE D++++ IL
Sbjct: 172 IEEEAKEEADKKAKEIL 188
Score = 36.4 bits (85), Expect = 0.085
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 21/186 (11%)
Query: 128 VAKSAGEQMVVELQN----ILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELE 183
+ K E+ + + I+ + E +TL++E A L+AK + + + KE
Sbjct: 18 LRKRIAEKKLGSAEELAKRIIEEAKKEAETLKKE-ALLEAKEEVHKL-RAELERELKERR 75
Query: 184 GRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEK-ECRLQALNTELERNKHRELQLAE 242
LQ L R RE L L +K +LEK E L L+ + +L
Sbjct: 76 NELQRLE---RRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIA 132
Query: 243 DNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNK--EEASVEIVKE 300
+ R E++S L +E A+ +EV + ++++ + EEA E K+
Sbjct: 133 EQREELERISGLTQE---------EAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKK 183
Query: 301 LKDLMA 306
K+++A
Sbjct: 184 AKEILA 189
Score = 34.5 bits (80), Expect = 0.33
Identities = 32/141 (22%), Positives = 71/141 (50%), Gaps = 10/141 (7%)
Query: 945 EVDYKKSIDQLMKDREDLQQQINL-LKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNK 1003
E K+ I++ K+ E L+++ L KEE+ K E+E+ K+ + E + + +
Sbjct: 31 EELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRA---ELERELKERRNELQRLERRLLQ 87
Query: 1004 LAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQEL 1063
E ++RK + K + ++ KKEKE ++ L ++ E+ +++ + ++EL+ +
Sbjct: 88 REETLDRKMESLDKKEE------NLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141
Query: 1064 QSQVVEENTSKLKLQMELDSK 1084
EE L ++E +++
Sbjct: 142 SGLTQEEAKEILLEEVEEEAR 162
Score = 30.7 bits (70), Expect = 5.3
Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 10/123 (8%)
Query: 29 LERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNE 88
L+ R E+ +LE R Q E + + + + EK L+ +L E + +
Sbjct: 71 LKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEEL 130
Query: 89 SETKKK----------AEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVV 138
+++ E ++ ++ E+ + EA + ++ A+ K A E +
Sbjct: 131 IAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILAT 190
Query: 139 ELQ 141
+Q
Sbjct: 191 AIQ 193
Score = 30.7 bits (70), Expect = 5.9
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 908 ENDKQNTDPELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQIN 967
E K + E ELK+ R++L E L +RE + ++ L K E+L+++
Sbjct: 59 EVHKLRAELERELKE----RRNELQRLERRL---LQREETLDRKMESLDKKEENLEKKEK 111
Query: 968 LLKEELRKSSNSSEEMEKLHKQLKQE 993
L + + EE+E+L + ++E
Sbjct: 112 ELSNKEKNLDEKEEELEELIAEQREE 137
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 39.7 bits (93), Expect = 0.010
Identities = 88/358 (24%), Positives = 155/358 (43%), Gaps = 79/358 (22%)
Query: 37 SQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESETKKKAE 96
SQL E+ RQ Q E ARE + D + QL + T R L E +RR
Sbjct: 116 SQLLEKSRQA--QQEQDRAREIS--DSLSQLPQQQTEARRQLNEIERR------------ 159
Query: 97 VNLQVISDMHEKLKTEAETATRLRK-QSAELTVAKSAGEQMVVELQNILATLEMERDTLQ 155
L+T T L + Q L +A + +V EL+ LA L +
Sbjct: 160 ------------LQTLGTPNTPLAQAQLTALQAESAALKALVDELE--LAQLSANN---R 202
Query: 156 QEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLA-EDNRHLGEKV 214
QE+A L+++++++R ++L+ LQAL +L + RE + A E L E+
Sbjct: 203 QELARLRSELAKKR---------SQQLDAYLQALRNQLNSQRQREAERALESTELLAEQS 253
Query: 215 SSLEKECRLQALNTELERNKHRELQLAEDNR-HLGEKVSSLEKECASLSLELKAA----- 268
L K ++ + + N REL A + + + ++S +++ AS +L+++ A
Sbjct: 254 GDLPK-----SIVAQFKIN--RELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLR 306
Query: 269 -QAQYQQEVRAHEET-----------QKSRMVNKEEASVEIVKELK--DLMAKHRSDLSS 314
Q+Q+ A E K + ++ E A + V+ L+ DL+ K
Sbjct: 307 EQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEMAQLR-VQRLRYEDLLNKQPQLRQI 365
Query: 315 KESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAE-LRQELEKSKTLQSQVE 371
++ ++G+ + + +D ++ + +L +N L G + L EL K K SQ+E
Sbjct: 366 RQ---ADGQPLTAEQNRILDAQLRTQREL---LNSLLSGGDTLILELTKLKVANSQLE 417
Score = 38.9 bits (91), Expect = 0.018
Identities = 67/275 (24%), Positives = 111/275 (40%), Gaps = 54/275 (19%)
Query: 260 SLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLL 319
+ L A A E + +E ++++ K A EIV+ L+ S + L
Sbjct: 10 AWLLSWGAYAATAPDEKQITQELEQAK-AAKTPAQAEIVEALQ-----------SALNWL 57
Query: 320 SNGK---EREVDYKKSIDQLMKDREDLQQQINLLKEG----------AELRQE------- 359
K ER Y++ ID K +L+QQ+N ++ L QE
Sbjct: 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQ 117
Query: 360 -LEKSKTLQSQVEQEQAKKFS-LQSDLSVQTSEA----AHLKAREEQLSHEVAMLREAK- 412
LEKS+ Q+Q EQ++A++ S S L Q +EA ++ R + L L +A+
Sbjct: 118 LLEKSR--QAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQL 175
Query: 413 --RNIEEEYHKLKTKRSVEDLQMKEL--QDQLETEQYFSTLYKTQAHELKEELDE-RSR- 466
E K V++L++ +L ++ E + S L K ++ +L L R++
Sbjct: 176 TALQAESAALKAL----VDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQL 231
Query: 467 NILELEEERGDLTHRLQLAVARADSEALARSIAEE 501
N E L LA S L +SI +
Sbjct: 232 NSQRQREAERALESTELLA---EQSGDLPKSIVAQ 263
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 39.4 bits (92), Expect = 0.016
Identities = 64/409 (15%), Positives = 133/409 (32%), Gaps = 56/409 (13%)
Query: 144 LATLEMERDTLQQEVATLQAKISQERSSKTQAVNL------HKELEG---RLQALNTELE 194
+A L+ + E+A L ++ + + + + L R + E
Sbjct: 744 IAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAE 803
Query: 195 RNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSL 254
+ + A +E A + +L + + + G+ + +L
Sbjct: 804 SAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTL 863
Query: 255 E---KECASLSLELKAAQAQYQQ---EVRAHEETQKSRMVNKEEASVEIVKELKDLMAKH 308
E +E + +A+ + + R E EEAS+ + + L++ +
Sbjct: 864 EVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRL-RTLEESVGAM 922
Query: 309 RSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQS 368
++ ++ L+ + + + +L + ++ +E +
Sbjct: 923 VDEIRAR---LAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAEAR 979
Query: 369 QVEQEQAKKFSLQ-------SDLSVQTSEA-----AHLKARE--EQLSHEVAMLRE---- 410
Q ++F+L D V +A A LK E +VA E
Sbjct: 980 DHAIGQLREFALTGLLEDALPDTEVPELDAKWTIEAALKVARRTEAALLQVADDDEALDR 1039
Query: 411 AKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQY---FSTLYKTQAH-------ELKEE 460
A I EEY +L+ + Q+E S +Y+ + L++E
Sbjct: 1040 AANRISEEYLELRRTLAALGDDA-----QMEPADDGLVVSLVYQGRPVTPAGLLARLEQE 1094
Query: 461 LDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELEKE 509
+ +R + ER L + LQ +AR + AE V + E
Sbjct: 1095 IAQRRELL--TARERELLENHLQGEIARHLQSLILA--AERQVAAMNTE 1139
Score = 37.9 bits (88), Expect = 0.047
Identities = 48/265 (18%), Positives = 81/265 (30%), Gaps = 35/265 (13%)
Query: 23 GELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQ 82
+ D L RE+ L RQR L+++ + L+ +
Sbjct: 752 AAVDDELAELARELRALGARQRALADELAGAPSDR-------------------SLRAAH 792
Query: 83 RRADNESETKKKAEVNLQVISDMHEKLKTEAETATR-LRKQSAELTVAKSAGEQMVVELQ 141
RRA + AE L + + A R L + +A+L + L+
Sbjct: 793 RRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPD-----ALE 847
Query: 142 NILATLEMERDTLQQ-EVATLQAKISQER--SSKTQAVNLHKELEGRLQALNTELERNKH 198
+ L+ D L EVA + + + R + +A + + +
Sbjct: 848 AVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEE 907
Query: 199 RELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKEC 258
L+L +G V + RL L +LAE E E++
Sbjct: 908 ASLRLRTLEESVGAMVDEIRA--RLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965
Query: 259 ASLSLELKAAQAQYQQEVRAHEETQ 283
A A + E R H Q
Sbjct: 966 AEA-----DATLDERAEARDHAIGQ 985
Score = 33.2 bits (76), Expect = 1.1
Identities = 56/298 (18%), Positives = 97/298 (32%), Gaps = 46/298 (15%)
Query: 19 GQANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRD--------EMGQLEKN 70
+ G +D LE R E +L+ R L + +A+ R AL+ E+ + +
Sbjct: 282 SRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARAD 341
Query: 71 LTILR--------------HDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETA 116
L+ L+E +RR D E+ AE L E+L AE A
Sbjct: 342 AEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAEREL---RAAREQLARAAERA 398
Query: 117 TRLRKQSAELTVAKSAGEQMVV--------ELQNILATLEMERDTLQQEVATLQAKISQE 168
+AE A +A E + + ++A + L++ A ++
Sbjct: 399 GLSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLRRRDD--VADRAEA 456
Query: 169 RSSKTQAVNLHKELEGRLQALNTELERNK-HRELQLAEDNRHLGEKVSSL------EKEC 221
+ +A + E A EL HRE ++ L ++
Sbjct: 457 THAAARARRDELDEEAEQAAARAELADEAVHREGARLAWVDAWQAQLRELTILAVDDQPG 516
Query: 222 RLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAH 279
L L + E + + V L E L+ A+ ++E A
Sbjct: 517 ALADL-DSWDALLQGEAPVRV---AVYSAVQPLADELTRERAALRLAEEVLEEERDAL 570
Score = 31.3 bits (71), Expect = 3.8
Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 45/257 (17%)
Query: 10 QVDNAIPNGGQANGELKDLLERERREMSQLEERQR---------------QLSEQYEAVS 54
V +A+ + EL+ L E R + +R R QY+ +S
Sbjct: 224 DVADALEQLDEYRDELERL-EALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLS 282
Query: 55 ARETALRDEMGQLEKNLTILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAE 114
RDE+ + +L + E++ + LQ +AE
Sbjct: 283 RDLGRARDELETAREEE----RELDARTEALEREADALRTRLEALQGSPAYQ-----DAE 333
Query: 115 TATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQ 174
R R + L A + Q + E + + LE ER L +E L
Sbjct: 334 ELERARADAEALQAAAADARQAIREAE---SRLEEERRRLDEEAGRLD------------ 378
Query: 175 AVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELER-N 233
+ +EL + L ER AE + L + L++ L A + +R
Sbjct: 379 --DAERELRAAREQLARAAERAGLSPAHTAEPDAALAAQE--LQELGALDARRQDADRVI 434
Query: 234 KHRELQLAEDNRHLGEK 250
R Q+A R
Sbjct: 435 AQRSEQVALLRRRDDVA 451
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR). This
family consists of several mammalian alpha helical
coiled-coil rod HCR proteins. The function of HCR is
unknown but it has been implicated in psoriasis in
humans and is thought to affect keratinocyte
proliferation.
Length = 739
Score = 39.3 bits (91), Expect = 0.016
Identities = 111/497 (22%), Positives = 203/497 (40%), Gaps = 59/497 (11%)
Query: 110 KTEAETATRLRKQSAEL---TVAKSAGEQMVVELQNILATLEMERDTL----QQEVATLQ 162
+T + RL Q+ EL VA+ AG L+ LA E R L QQE+ Q
Sbjct: 87 ETSLQQKMRLEAQAEELEALAVAEKAGRAEAEGLRAALAGAEEVRKNLEEGGQQELEEAQ 146
Query: 163 AKISQERSSKTQAV-----NLHKELEGRLQALNTELERNKHRELQLAEDNRH---LGEKV 214
++ SS TQA +L + EG ++L + R LA L E++
Sbjct: 147 RLHQEQLSSLTQAHLEALSSLRSKAEGLEKSLQSLETRRAGEAKALAAAQAEADTLREQL 206
Query: 215 SSLEKECRLQALNTELERNKHRELQLAE--------DNRHLGEKVSSLEKECASLSLELK 266
S ++E Q E R E +AE + L + V L+++ A+L ++
Sbjct: 207 SKTQEELEAQVTLVEQLRKYVGEQVVAESRSQAWELERGELLQTVKHLQEDRAALQATVE 266
Query: 267 AAQAQYQQ-----EVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSN 321
Q + Q ++ E T+K++ V+ E E ++ + L+++ R + + L+
Sbjct: 267 LLQVRVQSLTHILALQEEELTRKAQPVDILEP--EFARKCRSLLSRWREKVFA---LMVQ 321
Query: 322 GKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQ 381
K +E+ + S QL K +LQ+++ + + Q + K + +VE+ +K +
Sbjct: 322 LKAQELSHADSTCQLQKQVAELQEEVTSQSQEQAILQRSLQDKEAEVEVERMNSKVLQGE 381
Query: 382 SDLSVQTSE--AAHLKAREEQLSHEVAMLREAKRNIEEEYHK----------LKTKRSVE 429
+ + + + EEQL V + +++ + + L + S
Sbjct: 382 LSRAQEARRRLQQQVASAEEQLQLVVEAVHSSQQGLLATMAEVEVALAQLPSLSNRLSYA 441
Query: 430 DLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARA 489
++ +Q + + + L + + E ++ S + +L EER L LQL+
Sbjct: 442 VRKVHTIQGLVARKVALAQLRQESSPPAPAEAEDLSTELRQLREERNRLDAELQLSARLI 501
Query: 490 DSE-ALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREV---DY 545
E AR EE L + E EL++ S+ESL S G + E
Sbjct: 502 QQEVGRAREQGEEERQRLAEVAQQLERELQE----------SQESLASAGAQLEAARAGQ 551
Query: 546 KKSIDQLMKDREDLQQQ 562
++S ++ R++L QQ
Sbjct: 552 QESTEEAASLRQELTQQ 568
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 37.7 bits (88), Expect = 0.041
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 17/174 (9%)
Query: 33 RREMSQLEERQRQLS-EQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESET 91
E+S+ +E E EA++ R+ R QL +L + D E
Sbjct: 203 YSEISEAQEELEAARLELNEAIAQRDALKR----QLGGEEPVLLAGSSVANSELDGRIEA 258
Query: 92 KKKAEVNLQVI-SDMH-EKLKTEAETATRLRKQSAELTVAKSAGEQ------MVVELQNI 143
+K L++ +D H + + T+ E A ++ E + E+ + +LQ
Sbjct: 259 LEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIE 318
Query: 144 LATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNK 197
LA E E +L+ VA L A+I + S + E+E L LN + E NK
Sbjct: 319 LAEAEAEIASLEARVAELTARIERLESL----LRTIPEVEAELTQLNRDYEVNK 368
Score = 35.8 bits (83), Expect = 0.14
Identities = 51/248 (20%), Positives = 89/248 (35%), Gaps = 40/248 (16%)
Query: 208 RHLGEKVSSLEKECRLQALNTELERNKHRELQ-LAEDNRHLGEKVSSLEKECASLSLELK 266
R + E++ + EK +L+A L+ K L + ++S ++E + LEL
Sbjct: 164 RFIDEQIKTYEK--KLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELN 221
Query: 267 AAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKERE 326
A AQ R K ++L + S S L R
Sbjct: 222 EAIAQ--------------RDALK--------RQLGGEEPVLLAGSSVANSELDG---RI 256
Query: 327 VDYKKSIDQLM-------KDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFS 379
+K +D L D +++I L+E + +E + E
Sbjct: 257 EALEKQLDALRLRYTDKHPDVIATKREIAQLEE--QKEEEGSAKNGGPERGEIANPVYQQ 314
Query: 380 LQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNI---EEEYHKLKTKRSVEDLQMKEL 436
LQ +L+ +E A L+AR +L+ + L R I E E +L V ++L
Sbjct: 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQL 374
Query: 437 QDQLETEQ 444
+ E+ +
Sbjct: 375 LTRRESAE 382
Score = 33.9 bits (78), Expect = 0.62
Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 18/179 (10%)
Query: 116 ATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQA 175
A RL A + Q+ E +LA + L + L+ ++ R T
Sbjct: 215 AARLELNEAIAQRD-ALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTD- 272
Query: 176 VNLHKELEGRLQALNTELERNKHRELQL--------AEDNRHLGEKVSSLEK-ECRLQAL 226
H ++ + +LE K E N + L + E + +L
Sbjct: 273 --KHPDVI-ATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASL 329
Query: 227 NTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKS 285
+ E L + +E E L+ + + ++ Y+Q + E + S
Sbjct: 330 EAR-VAELTARI---ERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384
Score = 30.0 bits (68), Expect = 9.4
Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 19/196 (9%)
Query: 935 ESLLSNGKEREVDYKKSIDQLMKDRE-DLQQQINLLKEELRKSSNSSEEMEKLHKQLKQE 993
E L + R +K+ ++ D+E D +I+ +EEL + +E +++
Sbjct: 174 EKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAA-----RLELNEAIAQRD 228
Query: 994 QLLKAQAVNKLAEIMNRKDINTTCKGKSKASSA-DVRKKEKECRKLQQELTQEREKFNQV 1052
L + + G S A+S D R + E ++L + +K V
Sbjct: 229 ALKRQLGGEE----------PVLLAGSSVANSELDGRIEALE-KQLDALRLRYTDKHPDV 277
Query: 1053 VVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVEN 1112
+ ++E+ +L+ Q EE ++K + + +QLQ +LA +E ASL + E
Sbjct: 278 I-ATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAEL 336
Query: 1113 DESYVQDEVRSRSVTQ 1128
+ E R++ +
Sbjct: 337 TARIERLESLLRTIPE 352
>gnl|CDD|131451 TIGR02398, gluc_glyc_Psyn, glucosylglycerol-phosphate synthase.
Glucosylglycerol-phosphate synthase catalyzes the key
step in the biosynthesis of the osmolyte
glucosylglycerol. It is known in several cyanobacteria
and in Pseudomonas anguilliseptica. The enzyme is
closely related to the alpha,alpha-trehalose-phosphate
synthase, likewise involved in osmolyte biosynthesis, of
E. coli and many other bacteria. A close homolog from
Xanthomonas campestris is excluded from this model and
scores between trusted and noise.
Length = 487
Score = 37.6 bits (87), Expect = 0.041
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 301 LKDLMAKHRSDLSSKESLLSNGKEREVDYKKSI-------DQLMKDREDLQQQINLLKEG 353
++++M + RS+L+ + +LS + VDY K I ++L++ R +L ++ L+
Sbjct: 271 IREMMERIRSELAGVKLILSAER---VDYTKGILEKLNAYERLLERRPELLGKVTLVTAC 327
Query: 354 AELRQELEKSKTLQSQVEQ 372
+ LQ Q+EQ
Sbjct: 328 VPAASGMTIYDELQGQIEQ 346
>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases. Protein
Tyrosine Kinase (PTK) family; Janus kinase (Jak)
subfamily; pseudokinase domain (repeat1). The Jak
subfamily is composed of Jak1, Jak2, Jak3, TYK2, and
similar proteins. The PTKc (catalytic domain) family to
which this subfamily belongs, is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal catalytic tyr
kinase domain. The pseudokinase domain shows similarity
to tyr kinases but lacks crucial residues for catalytic
activity and ATP binding. It modulates the kinase
activity of the C-terminal catalytic domain. Most Jaks
are expressed in a wide variety of tissues, except for
Jak3, which is expressed only in hematopoietic cells.
Jaks are crucial for cytokine receptor signaling. They
are activated by autophosphorylation upon
cytokine-induced receptor aggregation, and subsequently
trigger downstream signaling events such as the
phosphorylation of signal transducers and activators of
transcription (STATs). Jaks are also involved in
regulating the surface expression of some cytokine
receptors. The Jak-STAT pathway is involved in many
biological processes including hematopoiesis,
immunoregulation, host defense, fertility, lactation,
growth, and embryogenesis.
Length = 259
Score = 37.1 bits (86), Expect = 0.043
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 664 YIMFQLCNGLSYIHACKVMHRDLKPSNILI-----DKSCS--IKIGDLGLARSLSDSKEC 716
+ QL + L Y+ K++H ++ NIL+ ++ IK+ D G+ ++ +E
Sbjct: 105 DVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREER 164
Query: 717 LTE--YIATRWYRAPEILISNRRYTHHVDIWSLGCILAEM 754
+ +IA R + + T D WS G L E+
Sbjct: 165 VERIPWIAPECIRNGQASL-----TIAADKWSFGTTLLEI 199
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 37.7 bits (87), Expect = 0.048
Identities = 98/538 (18%), Positives = 212/538 (39%), Gaps = 44/538 (8%)
Query: 29 LERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILR--HDLKESQRRAD 86
L+RER R EQ + + L++ L R + L++ ++
Sbjct: 41 LKRERALRKDEAARITVWKEQLRVTQEENQHAQLTVQALQEELKSQRELNRLQQKLEKSG 100
Query: 87 NESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILAT 146
NE+ ++ E + S + + + +A LR +L Q +
Sbjct: 101 NETGELQQLEKSEGQFSRIQAERERQAMELFLLRDTLEKL--------------QLRMER 146
Query: 147 LEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAED 206
L+ D +E+ L + Q + +A E GR++ E E + L E
Sbjct: 147 LQQTLDARDEEIKKLLEML-QSKGLSAKAEEEDSERLGRIR----EAEDQQSHLEVLLEQ 201
Query: 207 NRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELK 266
EK + +E Q L E + K Q D + K+ EK E+
Sbjct: 202 K----EKEHMMLREEIHQKLQMERDDAKTEASQKLIDEKD--TKIKEFEKMLEKAENEIY 255
Query: 267 AAQAQ--YQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKE 324
Q++ + R + + + A +++ +++L ++ L
Sbjct: 256 RLQSRCDTSEADRNRLDKEVEAERSALAAMKAKCDRAAQELSRKKTELLGLQTELETLAN 315
Query: 325 REVDYKKSIDQLMKDREDLQQQINLLKEGAE-LRQELEKSKTLQSQVEQEQAKKFSLQSD 383
++ D ++ +D+L +D +Q+ +L+ + LR ELE+ ++ A + Q +
Sbjct: 316 QDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALRYELERKHNTL---TKKTASLQAAQEE 372
Query: 384 LSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETE 443
+ E ++ R E+ ++ +L++ N++E + + ++ ++KE +++L +
Sbjct: 373 KATYAGEIEDMRDRYEKTERKLRVLQKKIENLQETFRR-------KERRLKEEKERLRSL 425
Query: 444 QYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETV 503
Q T T +L++ L E+ R I L+E+R Q E +E V
Sbjct: 426 QT-DTNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQEEFETYKKEFEDL---KEEV 481
Query: 504 GELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQ 561
L+ + + +EL+L+ L + S++ S+ + ++ +K ++ K ++L++
Sbjct: 482 QNLQLKLSERELQLELLKEEVSKLASNQLKQRSDLERAHIELEKIREKHEKLEKELKR 539
Score = 33.1 bits (75), Expect = 1.0
Identities = 81/514 (15%), Positives = 192/514 (37%), Gaps = 41/514 (7%)
Query: 25 LKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRR 84
+ L++ + ++ + E+ + + + +R + +L+K + R L + +
Sbjct: 229 SQKLIDEKDTKIKEFEKMLEKAENEIYRLQSRCDTSEADRNRLDKEVEAERSALAAMKAK 288
Query: 85 ADN-ESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNI 143
D E +K L + +++ +++ L K +LT A
Sbjct: 289 CDRAAQELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRA-------------- 334
Query: 144 LATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQL 203
E E+ LQ EV L+ ++ ++ ++ T+ + + E+E + R +
Sbjct: 335 ----EQEKAILQTEVDALRYELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKT 390
Query: 204 AEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSL 263
R L +K+ +L++ R + + E+ + R LQ + EK+ E +
Sbjct: 391 ERKLRVLQKKIENLQETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIE 450
Query: 264 ELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGK 323
LK + + ++ + ET K + +E + +L + + L SN
Sbjct: 451 RLKEQRDRDERYEQEEFETYKKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQL 510
Query: 324 EREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSD 383
++ D +++ EL + EK + L+ ++++ +A
Sbjct: 511 KQRSDLERA--------------------HIELEKIREKHEKLEKELKRLRANP-ESADR 549
Query: 384 LSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETE 443
S + + +A +EV L + E+E + + ++++ Q L +
Sbjct: 550 GSAVDAGTSRSRADSAGARNEVDRLLDRLEKAEQERDDTEMEAGRLAKELEKAQRHLTKQ 609
Query: 444 QYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETV 503
Q + + + EL E + + + E E L Q+ A+A + ++
Sbjct: 610 QEKTEATRIEFERKSAELLEEAERLEKSEAEEETLRQSTQIGHAQAAAHNHIEHHVQKLE 669
Query: 504 GELEKEKTMKELELKDLMAKHRSDLSSKESLLSN 537
+L++ + +E +L + K + L + L+
Sbjct: 670 SDLKQLRAERE-QLVAQLEKSQQSLMEFQQELNA 702
Score = 33.1 bits (75), Expect = 1.2
Identities = 96/564 (17%), Positives = 214/564 (37%), Gaps = 37/564 (6%)
Query: 23 GELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQ 82
+L+ +ER ++ + +E ++L E ++ A ++ +L + + ++ Q
Sbjct: 138 EKLQLRMERLQQTLDARDEEIKKLLEMLQSKGLSAKAEEEDSERLGR-----IREAEDQQ 192
Query: 83 RRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSA--ELTVAKSAGEQMVVEL 140
+ E K+K + L+ ++H+KL+ E + A Q E E+M+ +
Sbjct: 193 SHLEVLLEQKEKEHMMLR--EEIHQKLQMERDDAKTEASQKLIDEKDTKIKEFEKMLEKA 250
Query: 141 QNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRE 200
+N + L+ DT + + L ++ ERS+ L TEL +
Sbjct: 251 ENEIYRLQSRCDTSEADRNRLDKEVEAERSALAAMKAKCDRAAQELSRKKTELLGLQTEL 310
Query: 201 LQLAEDNRHLGEKVSSLE-----KECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLE 255
LA + + + + L+ E L TE++ ++ + + + +
Sbjct: 311 ETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALRYELERKHNTLTKKTASLQAAQ 370
Query: 256 KECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSK 315
+E A+ + E++ + +Y++ R QK ++ N +E + LK+ + RS +
Sbjct: 371 EEKATYAGEIEDMRDRYEKTERKLRVLQK-KIENLQETFRRKERRLKEEKERLRSLQTD- 428
Query: 316 ESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQA 375
+N +K++ + + E L++Q + R E E+ +T + + E +
Sbjct: 429 ----TNTDTALEKLEKALAEKERIIERLKEQ-----RDRDERYEQEEFETYKKEFEDLKE 479
Query: 376 KKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKE 435
+ +LQ LS + + LK +L+ R E K++ K + ++K
Sbjct: 480 EVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSDLERAHIELEKIREKHEKLEKELKR 539
Query: 436 LQDQLETEQYFSTL------YKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARA 489
L+ E+ S + + + + E+D + + E+ER D
Sbjct: 540 LRANPESADRGSAVDAGTSRSRADSAGARNEVDRLLDRLEKAEQERDDTEMEAGRLAKEL 599
Query: 490 DSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYK--- 546
+ + +E E K EL + + + +E+L + +
Sbjct: 600 EKAQRHLTKQQEKTEATRIEFERKSAELLEEAERLEKSEAEEETLRQSTQIGHAQAAAHN 659
Query: 547 ---KSIDQLMKDREDLQQQINLLK 567
+ +L D + L+ + L
Sbjct: 660 HIEHHVQKLESDLKQLRAEREQLV 683
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 37.2 bits (86), Expect = 0.059
Identities = 56/258 (21%), Positives = 100/258 (38%), Gaps = 42/258 (16%)
Query: 221 CRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHE 280
CR + ++ K R +A R K+ S E L + Q+ + +
Sbjct: 35 CRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSD 94
Query: 281 ETQKSRMVNKEEASVEIVKE---------------LKDLMAKHRSDLSSKESLLSNGKER 325
+ + ++EA I E L+DL+ ++ + K LL N +
Sbjct: 95 DDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQN--AEKNILLLN--QA 150
Query: 326 EVDYKKSIDQLMKDREDLQQQINLL-----------------KEGAELRQE-LEK-SKTL 366
+ + +++++ ++E LQ +IN+L K E+ +E LEK L
Sbjct: 151 RLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNEL 210
Query: 367 QSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKR 426
+ E SL +L V E LK + L E+ + E EE KL+ +R
Sbjct: 211 LIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAET----EERVFKLEKER 266
Query: 427 SVEDLQMKELQDQLETEQ 444
S+ D ++EL+ + Q
Sbjct: 267 SLLDASLRELESKFIVAQ 284
Score = 34.9 bits (80), Expect = 0.36
Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 33/219 (15%)
Query: 150 ERDTLQQEVATLQAKISQ--ERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDN 207
E++ LQ ++ L+ ++S+ R +H E+ L +LE+ ++ L
Sbjct: 164 EKEALQGKINILEMRLSETDARIKLAAQEKIHVEI------LEEQLEKLRNELLIRGATE 217
Query: 208 RHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDN-RHLGEKVSSLEKECASLSLELK 266
G V SL KE + L ++ + L+ E+V LEKE + L L+
Sbjct: 218 ---GLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLR 274
Query: 267 AAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAK-------------HRSDLS 313
++++ + A E+ K + + + E V+ L+DL+ + DL
Sbjct: 275 ELESKF---IVAQEDVSKLSPL-QYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLR 330
Query: 314 SKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKE 352
K L + K S ++ E LQQ++ LL+E
Sbjct: 331 DKVDKLEASLKEANVSKFSSYKV----ELLQQKLKLLEE 365
Score = 31.4 bits (71), Expect = 3.7
Identities = 53/212 (25%), Positives = 101/212 (47%), Gaps = 28/212 (13%)
Query: 896 VVSSKKIIFYNSENDKQNTDPELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQL 955
+ + NS++ +Q +D +LE DL+ ++ + K LL N + + + ++++
Sbjct: 108 IAAIDNEQQTNSKDGEQLSDFQLE--DLVGMIQN--AEKNILLLN--QARLQALEDLEKI 161
Query: 956 MKDREDLQQQINLLKEELRKSSNSSE--EMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDI 1013
+ ++E LQ +IN+L+ L ++ + EK+H ++ +EQL K + E++ R
Sbjct: 162 LTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLR-----NELLIRGAT 216
Query: 1014 NTTCKGKSKASSADVRKKEKECRK-----LQQELTQEREKFNQVVVKCQKE-------LQ 1061
C S + DV K+E K L+ EL + E + V K +KE L+
Sbjct: 217 EGLCV-HSLSKELDVLKEENMLLKDDIQFLKAELIEVAET-EERVFKLEKERSLLDASLR 274
Query: 1062 ELQSQVVEENTSKLKLQ-MELDSKDSEIEQLQ 1092
EL+S+ + KL ++ D ++E LQ
Sbjct: 275 ELESKFIVAQEDVSKLSPLQYDCWWEKVENLQ 306
>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA10
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). EphA10,
which contains an inactive tyr kinase domain, may
function to attenuate signals of co-clustered active
receptors. EphA10 is mainly expressed in the testis.
Ephrin/EphR interaction results in cell-cell repulsion
or adhesion, making it important in neural development
and plasticity, cell morphogenesis, cell-fate
determination, embryonic development, tissue patterning,
and angiogenesis.
Length = 266
Score = 36.4 bits (84), Expect = 0.070
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 24/220 (10%)
Query: 601 TDAQRT--YREILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYMEND-LNKVIR--DK 655
+D QR E L L F H NI+ + + N + +V EYM N L+ +R +
Sbjct: 46 SDKQRRGFLAEALTLGQFD-HSNIVRLEGVITRGNT--MMIVTEYMSNGALDSFLRKHEG 102
Query: 656 ILKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKSCSIKIGDLGLARSLSDSKE 715
L + ++ L +G+ Y+ +H+ L +L++ KI G R D E
Sbjct: 103 QLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKIS--GFRRLQEDKSE 160
Query: 716 CLTEYIATR---WYRAPEILISNRRYTHHVDIWSLGCILAEMLQSKPLFPGASTSHQ--L 770
+ ++ + + APE I ++ D+WS G ++ E++ S P S Q +
Sbjct: 161 AIYTTMSGKSPVLWAAPEA-IQYHHFSSASDVWSFGIVMWEVM-SYGERPYWDMSGQDVI 218
Query: 771 QLIVNLVR-------PNPPHADKFYAGFKSKHEREKFNQV 803
+ + + R PN H K + ER +F+Q+
Sbjct: 219 KAVEDGFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQI 258
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 36.8 bits (86), Expect = 0.077
Identities = 46/231 (19%), Positives = 93/231 (40%), Gaps = 41/231 (17%)
Query: 306 AKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINL--------------LK 351
+ L +++ L+ E+ + ID+ ++ E L+QQ+ LK
Sbjct: 48 LNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALK 107
Query: 352 EGA--ELRQELEK--SKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAM 407
+ E R+ L + L+S++ Q + + Q+DL+ S+ L+ + E+ A
Sbjct: 108 DDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQ---AA 164
Query: 408 LREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYF---STLYKTQAHE-------- 456
L + +++ + LK + + L+ EQ + ++ E
Sbjct: 165 LYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDL 224
Query: 457 LKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETVGELE 507
L+++ D + I LE + LQ A+ +S+ L S E+TV E +
Sbjct: 225 LQKQRDYLTARIQRLEHQLQL----LQEAI---NSKRLTLS--EKTVQEAQ 266
Score = 36.4 bits (85), Expect = 0.12
Identities = 89/426 (20%), Positives = 153/426 (35%), Gaps = 125/426 (29%)
Query: 20 QANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLK 79
+ +LK L + ++ Q + L + RET + QLE L L+
Sbjct: 80 EETEQLKQQLAQAPAKLRQAQAELEALKDD-NDEETRETLSTLSLRQLESRLAQTLDQLQ 138
Query: 80 ESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETA--------TRL---RKQSAELTV 128
+Q AE N Q++S L+T+ E A RL R V
Sbjct: 139 NAQNDL---------AEYNSQLVS-----LQTQPERAQAALYANSQRLQQIRNLLKGGKV 184
Query: 129 AKSA----------GEQMVVELQNILATLEMERDT-------------------LQQEVA 159
A EQ ++ QN L +E +T L+ ++
Sbjct: 185 GGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQ 244
Query: 160 TLQAKISQER---SSKTQAVNLHKELEGRLQA---LNTELERNKHRELQLAEDNRHLGEK 213
LQ I+ +R S KT ++ R+QA + ELE N LQL++
Sbjct: 245 LLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEIN----LQLSQR------- 293
Query: 214 VSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQ 273
L+ +L L + R K+ +L + R++ E++S L+ SL L
Sbjct: 294 --LLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLK---GSLLL---------- 338
Query: 274 QEVRAHEETQKSRMVNKEEASVEIVKELKDL-------------MAKHRSDLSSKES--- 317
SR++ +++ ++ ++ L + + R L ++
Sbjct: 339 -----------SRILYQQQQALPSADLIEGLADRIADLRLEQFEINQQRDALFQPDAYID 387
Query: 318 -LLSNGKEREVD-YKKSIDQLMKDREDLQQQIN-----LLKEGAEL----RQELEKSKTL 366
L + K D + ++ QL+ +R +L Q+N L L +Q L S +L
Sbjct: 388 KLEAGHKSEVTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDSL 447
Query: 367 QSQVEQ 372
QS + Q
Sbjct: 448 QSTLTQ 453
Score = 35.3 bits (82), Expect = 0.27
Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 39/182 (21%)
Query: 925 AKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEME 984
+ L +++ L+ E+ + ID+ ++ E L+QQ+ +LR+ + E+E
Sbjct: 48 LNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQ---AQAELE 104
Query: 985 KLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQ 1044
LK + E + S S L+ L Q
Sbjct: 105 A----------LKDDNDEETRETL------------STLSLRQ----------LESRLAQ 132
Query: 1045 EREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETAS 1104
++ Q +L E SQ+V T + Q L + ++Q++ L +
Sbjct: 133 TLDQLQNA----QNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKA 188
Query: 1105 LS 1106
L
Sbjct: 189 LR 190
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 35.5 bits (82), Expect = 0.082
Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 132 AGEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNT 191
+ + EL+ L+ L+ E + L++ +A L++++ + L K LE RL++L
Sbjct: 76 ELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEE 135
Query: 192 ELE--RNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNK 234
++ + REL+ + + LQ L ++ +
Sbjct: 136 SIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQ 180
Score = 32.4 bits (74), Expect = 0.73
Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 936 SLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQL 995
L + + +++L + +L+QQ++ L+EEL E+E + LK++
Sbjct: 58 LCLLLKAPVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQ 117
Query: 996 LKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVK 1055
L + + L E + ++ +++ KE R+L+Q+L +E E+ + + +
Sbjct: 118 LLRELLKSLEE-------------RLESLEESIKELAKELRELRQDLREEVEELREELER 164
Query: 1056 CQKELQELQSQVVEENT 1072
Q+ LQ LQ + E +
Sbjct: 165 LQENLQRLQEAIQELQS 181
Score = 30.5 bits (69), Expect = 3.5
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 185 RLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDN 244
+L+ L EL K + +L E+ L E+++ LE E L+ L +L+ + E
Sbjct: 73 KLEELQGELSELKQQLSELQEELEDLEERIAELESE--LEDLKEDLQLLR-------ELL 123
Query: 245 RHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDL 304
+ L E++ SLE+ L+ EL+ + ++EV E + N + E ++EL+ L
Sbjct: 124 KSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRL-QEAIQELQSL 182
Query: 305 MAKH 308
+ +
Sbjct: 183 LEQL 186
Score = 30.5 bits (69), Expect = 3.9
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 20/124 (16%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQR 83
ELK L + E+ LEER +L + E + LR+ + LE+ L L +KE +
Sbjct: 83 ELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAK 142
Query: 84 RADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNI 143
+ ++ + L+ E E LR++ L ++ + ELQ++
Sbjct: 143 E-----------------LRELRQDLREEVE---ELREELERLQENLQRLQEAIQELQSL 182
Query: 144 LATL 147
L L
Sbjct: 183 LEQL 186
Score = 29.3 bits (66), Expect = 7.9
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 340 REDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREE 399
Q+ L E +EL+Q+L LQ ++E + + L+S+L + L+ +
Sbjct: 68 SVRPQKLEELQGELSELKQQL---SELQEELEDLEERIAELESELEDLKEDLQLLRELLK 124
Query: 400 QLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKE 459
L + L E+ + + +E +L R +++EL+++LE Q + EL+
Sbjct: 125 SLEERLESLEESIKELAKELREL---RQDLREEVEELREELERLQENLQRLQEAIQELQS 181
Query: 460 ELDE 463
L++
Sbjct: 182 LLEQ 185
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 36.6 bits (85), Expect = 0.092
Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 20/156 (12%)
Query: 22 NGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKES 81
N +L L ++ ++ L RQL+ + +R+++ L +L + R L +
Sbjct: 67 NDQLSQALNQQTERLNALASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSR-ILLQQ 125
Query: 82 QRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQ 141
+ +++ EV + L+ E L Q+ +LT
Sbjct: 126 LGPLPEAGQPQEQFEVT-----QERDALQAEKAYINALEGQAEQLTAEVR---------D 171
Query: 142 NILATLEMER----DTLQQEVATLQAKISQERSSKT 173
+ L+ R L Q A +++Q++ S
Sbjct: 172 ILDQILDTRRELLNSLLSQREAI-SLQLNQQQLSAA 206
Score = 33.1 bits (76), Expect = 1.2
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 119 LRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQAK-ISQERSSKTQAVN 177
L+ + LT + E + LQ + + E E A LQA+ I QE + Q
Sbjct: 13 LQSRRELLTAESAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQ 72
Query: 178 LHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELE 231
+ RL AL ++ + + LQL + +R + E+++ L L L+
Sbjct: 73 ALNQQTERLNALASDDRQLANLLLQLLQSSRTIREQIAVLRG--SLLLSRILLQ 124
Score = 30.4 bits (69), Expect = 7.5
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 15/155 (9%)
Query: 343 LQQQINLLKE-GAELRQE-----LEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKA 396
L+ + LL+E RQE E+++ ++QE A L L+ QT L +
Sbjct: 27 LEAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERLNALAS 86
Query: 397 REEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHE 456
+ QL++ + L ++ R I E L + L QL + E
Sbjct: 87 DDRQLANLLLQLLQSSRTIRE----QIAVLRGSLLLSRILLQQLGPLP--EAGQPQEQFE 140
Query: 457 LKEELDE--RSRN-ILELEEERGDLTHRLQLAVAR 488
+ +E D + I LE + LT ++ + +
Sbjct: 141 VTQERDALQAEKAYINALEGQAEQLTAEVRDILDQ 175
>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional.
Length = 294
Score = 36.1 bits (83), Expect = 0.093
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 638 YVVFEYMENDLNKVI-RDKILKDVHIRYIMFQLCNGLSYIHACKVMHRDLKPSNILIDKS 696
+++ E + + ++ R K I+ IM + L YIH + H D+KP NI++D +
Sbjct: 103 FILLEKLVENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGN 162
Query: 697 CSIKIGDLGLA 707
I D G+A
Sbjct: 163 NRGYIIDYGIA 173
>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain. Domain commonly found
in eukaryotic signalling proteins. The domain family
possesses multiple functions including the abilities to
bind inositol phosphates, and various proteins. PH
domains have been found to possess inserted domains
(such as in PLC gamma, syntrophins) and to be inserted
within other domains. Mutations in Brutons tyrosine
kinase (Btk) within its PH domain cause X-linked
agammaglobulinaemia (XLA) in patients. Point mutations
cluster into the positively charged end of the molecule
around the predicted binding site for
phosphatidylinositol lipids.
Length = 102
Score = 33.7 bits (77), Expect = 0.100
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 873 LEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDKQNTDP--ELELKDLMAKHRSD 930
EGW+ K + WKK+Y V+ + +++Y S+ DK++ P ++L + D
Sbjct: 3 KEGWLYK--KSGGGKKSWKKRYFVLFNSTLLYYKSKKDKKSYKPKGSIDLSGCTVREAPD 60
Query: 931 LSSKE 935
S +
Sbjct: 61 PDSSK 65
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 36.5 bits (84), Expect = 0.11
Identities = 55/297 (18%), Positives = 116/297 (39%), Gaps = 23/297 (7%)
Query: 124 AELTVAKSAGEQMVVELQNILATLEMERDTLQQEVAT----LQAKISQERSSKTQAVNLH 179
A A +A + ++ + TLE D L + +++ + A L
Sbjct: 303 AAAAEAAAAMDDRTARVKENMGTLETAWDALADAAKKMWDAVLGIGREDKQAALLAAKLA 362
Query: 180 KELEGRLQALNTELERNKHR-------ELQLAEDNRHLGEKVSSLEKECRLQALNTELER 232
E R+ A R K EL A ++ ++ + +E + L+T+ ER
Sbjct: 363 AEKLARVTAQGALNARLKLAQDDLTQAELNYAAADQAANQEGALNAREDEAEVLSTQEER 422
Query: 233 NKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEE 292
+ LA+ + + + + L+ A YQ+++ E + + E
Sbjct: 423 RDILKNLLADAEKRTARQEELNKALAKAKILQADKAAKAYQEDILQREAQSRGKTAAAER 482
Query: 293 ASVEIVKELKDLMAKHR--SDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLL 350
+ ++ LK L+A + +DLS + S +++ K+ +Q +E+ +Q+ L
Sbjct: 483 SQEQMTAALKALLAFQQQIADLSGAKEKAS---DQKSLLWKAEEQYALLKEEAKQR--QL 537
Query: 351 KEGAELRQELEKSKTLQSQVEQE---QAKKF--SLQSDLSVQTSEAAHLKAREEQLS 402
+E L + +++ SQ+ + QA +F S Q+ S + + + Q +
Sbjct: 538 QEQKALLEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGSDLYREALAQNA 594
Score = 30.8 bits (69), Expect = 6.5
Identities = 33/210 (15%), Positives = 61/210 (29%), Gaps = 14/210 (6%)
Query: 32 ERREMSQLEER-QRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESE 90
+ ++ E+R RQ A+ ++++ + A+ E
Sbjct: 426 LKNLLADAEKRTARQEELNKALAKAKILQADKAAKAYQEDILQREAQSRGKTAAAERSQE 485
Query: 91 TKKKAEVNLQVISDMHEKLKTEAETATR----LRKQSAELTVAKSAGEQMVVELQNILAT 146
A L L E A+ L K + + K +Q ++ Q L
Sbjct: 486 QMTAALKALLAFQQQIADLSGAKEKASDQKSLLWKAEEQYALLKEEAKQRQLQEQKALLE 545
Query: 147 LEMERDTLQQEVATLQAKISQER--------SSKTQAVNLHKELEGRL-QALNTELERNK 197
+ E ++A L + + S K + +L++E + ALN L
Sbjct: 546 HKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGSDLYREALAQNAAALNKALNELA 605
Query: 198 HRELQLAEDNRHLGEKVSSLEKECRLQALN 227
L S R A +
Sbjct: 606 AYWSALDLLQGDWKAGALSALANYRDSATD 635
>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Janus kinase 1. Protein
Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak1 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak1 is widely expressed in
many tissues. Many cytokines are dependent on Jak1 for
signaling, including those that use the shared receptor
subunits common gamma chain (IL-2, IL-4, IL-7, IL-9,
IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M,
G-CSF, and IFNs, among others). The many varied
interactions of Jak1 and its ubiquitous expression
suggest many biological roles. Jak1 is important in
neurological development, as well as in lymphoid
development and function. It also plays a role in the
pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 262
Score = 35.7 bits (82), Expect = 0.11
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 668 QLCNGLSYIHACKVMHRDLKPSNIL-----IDKSCS--IKIGDLGLARSLSDSKECLTEY 720
QL + LSY+ ++H ++ NIL ID C IK+ D G+ ++ +EC+ E
Sbjct: 113 QLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSRQECV-ER 171
Query: 721 IATRWYRAPEILISNRRYTHHVDIWSLGCILAEM 754
I W APE + ++ + D WS G L E+
Sbjct: 172 IP--WI-APECVEDSKNLSIAADKWSFGTTLWEI 202
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 35.7 bits (83), Expect = 0.13
Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 16/140 (11%)
Query: 95 AEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTL 154
+N Q I+++ + L E + L+ A L + SA E LQ +LA L
Sbjct: 56 DRLNSQ-IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAA 114
Query: 155 QQEVATLQAKISQERSSKTQAVN-----------LHKELEGRLQALNTELERNKHRELQL 203
+ L ++ E+ +A+ L ++L AL+ +R++ + ++
Sbjct: 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174
Query: 204 A----EDNRHLGEKVSSLEK 219
A N L ++V L +
Sbjct: 175 ADLGRRLNVALAQRVQELNR 194
>gnl|CDD|130078 TIGR01005, eps_transp_fam, exopolysaccharide transport protein
family. The model describes the exopolysaccharide
transport protein family in bacteria. The transport
protein is part of a large genetic locus which is
associated with exopolysaccharide (EPS) biosynthesis.
Detailed molecular characterization and gene fusion
analysis revealed atleast seven gene products are
involved in the overall regulation, which among other
things, include exopolysaccharide biosynthesis, property
of conferring virulence and exopolysaccharide export
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 754
Score = 36.1 bits (83), Expect = 0.14
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1026 ADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLK-LQMELDSK 1084
+R+++ E R +L+ + VV + L +L +Q+ E K L M+ D+
Sbjct: 291 QRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAA 350
Query: 1085 DSEIEQLQGKLAALGSETASLSSADVENDE 1114
+ QL + L + +A V+ D
Sbjct: 351 QARESQLVSDVNQLKAASAQAGEQQVDLDA 380
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 35.8 bits (83), Expect = 0.15
Identities = 38/250 (15%), Positives = 80/250 (32%), Gaps = 9/250 (3%)
Query: 77 DLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSA-ELTVAKSAGEQ 135
DL+E ++ + K + + S + E L + V K E
Sbjct: 35 DLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAE- 93
Query: 136 MVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELER 195
+ L+ ++ E +++ L+ ++S+ + + + E L L+ +L
Sbjct: 94 -LKSLEEVIKPAEKFSSEVEELTRKLEERLSELDE-ELEDLEDLLEELEPLAYLDFDLSL 151
Query: 196 NKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLE 255
+ + L EK+ +L + E + + + +KVS +
Sbjct: 152 LRGLKFLLVRLGLVRREKLEALVGVIEDEV-ALYGENVEASVVIVVAHGAEDLDKVSKIL 210
Query: 256 KECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSK 315
E E+ + + EE E + EL+ L K +L +
Sbjct: 211 NELGFELYEVPEFDGGPSELISELEEVIAEIQDELES----LRSELEALAEKIAEELLAV 266
Query: 316 ESLLSNGKER 325
+L K
Sbjct: 267 REILEIEKAL 276
Score = 31.9 bits (73), Expect = 2.2
Identities = 33/216 (15%), Positives = 76/216 (35%), Gaps = 41/216 (18%)
Query: 809 KELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVENDESYV 868
K L+E+ + ++ +L +L+ + SE+++ L L E +E
Sbjct: 95 KSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEE--------LEPLAYLD 146
Query: 869 QDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDKQNTDPELELKD---LMA 925
D L + ++ +++ K+ + + ++ ++
Sbjct: 147 FDLSLLRGLKF---LLVRLGLVRRE-------KLEALVGVIEDEVALYGENVEASVVIVV 196
Query: 926 KHRSDLSSKESLLSNG--------KEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSS 977
H ++ K S + N E + + I +L + ++Q ++ L+ EL
Sbjct: 197 AHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEA-- 254
Query: 978 NSSEEMEKLHKQLKQ--EQLL----KAQAVNKLAEI 1007
EK+ ++L E L ++KLA
Sbjct: 255 ----LAEKIAEELLAVREILEIEKALGDVLSKLART 286
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the autophagic
process and in the vacuolar protein sorting pathway.
Apg14p may be a component specifically required for the
function of Apg6/Vps30p through the autophagic pathway.
There are 17 auto-phagosomal component proteins which are
categorized into six functional units, one of which is
the AS-PI3K complex (Vps30/Atg6 and Atg14). The AS-PI3K
complex and the Atg2-Atg18 complex are essential for
nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol 3-phosphate
(PtdIns(3)P) at the pre-autophagosomal structure (PAS).
The localisation of this complex at the PAS is controlled
by Atg14. Autophagy mediates the cellular response to
nutrient deprivation, protein aggregation, and pathogen
invasion in humans, and malfunction of autophagy has been
implicated in multiple human diseases including cancer.
This effect seems to be mediated through direct
interaction of the human Atg14 with Beclin 1 in the human
phosphatidylinositol 3-kinase class III complex.
Length = 307
Score = 35.4 bits (82), Expect = 0.16
Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 15/155 (9%)
Query: 947 DYKKSIDQLMKDREDLQQQIN-LLKEELRKSSNSSEEMEKLHKQLKQE---------QLL 996
+ + + +L+ + E+L+Q++ L+ + + ++ KL K+E L
Sbjct: 24 ELRLDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQL 83
Query: 997 KAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKE-CRKLQQELTQEREKFNQVVVK 1055
K + K I K + ++S + K+ KLQ E+ + R K N
Sbjct: 84 KEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTRSKLNA---- 139
Query: 1056 CQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQ 1090
L E +S + E L+ + + +
Sbjct: 140 LHSLLAEKRSFLCRELAKLFPLRRVIRGRKGDSSS 174
Score = 33.1 bits (76), Expect = 0.81
Identities = 25/136 (18%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 328 DYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQ 387
+ + + +L+ + E+L+Q++ EGA + L+ +V +++ + +++ +S
Sbjct: 24 ELRLDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQL 83
Query: 388 TSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRS--VEDLQ--MKELQDQLETE 443
E + R E+L L + + ++ ++L+ +R+ +E LQ +K + +L
Sbjct: 84 KEEIEQKRERIEELKRA---LAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTRSKLNAL 140
Query: 444 QYFSTLYKTQAHELKE 459
S L + ++ +E
Sbjct: 141 H--SLLAEKRSFLCRE 154
Score = 32.0 bits (73), Expect = 2.1
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 5/135 (3%)
Query: 189 LNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLG 248
L + +L +N L +KV + + + K + E +
Sbjct: 18 ARNSLYELRLDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIR 77
Query: 249 EKVSSLEKECASLSLELKAAQAQYQQEVR----AHEETQKSRMVNKEEASVEIVKELKDL 304
++S L++E ++ + Q A + +K R E+ EI K +
Sbjct: 78 ARISQLKEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEI-KRTRSK 136
Query: 305 MAKHRSDLSSKESLL 319
+ S L+ K S L
Sbjct: 137 LNALHSLLAEKRSFL 151
>gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain.
The small mechanosensitive channel, MscS, is a part of
the turgor-driven solute efflux system that protects
bacteria from lysis in the event of osmotic shock. The
MscS protein alone is sufficient to form a functional
mechanosensitive channel gated directly by tension in
the lipid bilayer. The MscS proteins are heptamers of
three transmembrane subunits with seven converging M3
domains, and this MscS_porin is towards the N-terminal
of the molecules. The high concentration of negative
charges at the extracellular entrance of the pore helps
select the cations for efflux.
Length = 239
Score = 34.9 bits (81), Expect = 0.16
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 323 KEREVDYKKSIDQLMKDREDLQQQI-NLLKEGAELRQELEK--SKTLQSQVEQEQAKKFS 379
K++ Y+K ID K+ +L+Q++ L K A + EL L+ ++ Q ++
Sbjct: 37 KQKADQYQKQIDDAPKELRELRQELEALKKTDAPVFPELANLSLSQLEQRLAQTLSQLQE 96
Query: 380 LQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQ 439
LQ L + S+ L+ R E+ +++ R + I L+ + +
Sbjct: 97 LQEQLQQENSQLIELQTRPERAQQQLSEARRRLQEIRNR---LQALSPGGTPLAQAQRTL 153
Query: 440 LETEQYFSTLYKTQAHELKEEL 461
L+ E K Q EL+ EL
Sbjct: 154 LQAELA---ALKAQIEELELEL 172
Score = 32.2 bits (74), Expect = 1.4
Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 10/159 (6%)
Query: 950 KSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMN 1009
+DQL R+ + L ++L ++ N +E++K ++ Q Q A +L E+
Sbjct: 1 NQLDQL-NKRKLPTPEQKALIQDLEQALNFLDEIDKSKQKADQYQKQIDDAPKELRELRQ 59
Query: 1010 RKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVE 1069
+ A++ + L+Q L Q + ++ Q++LQ+ SQ++E
Sbjct: 60 ELEALKKTDAPVFPELANLSLSQ-----LEQRLAQTLSQLQEL----QEQLQQENSQLIE 110
Query: 1070 ENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSA 1108
T + Q +L +++++ +L AL L+ A
Sbjct: 111 LQTRPERAQQQLSEARRRLQEIRNRLQALSPGGTPLAQA 149
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 35.5 bits (82), Expect = 0.18
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 21 ANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKE 80
+ + RER E+ + EER Q EQ +A + + L +++ + EK L+ +L+E
Sbjct: 64 ERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEE 123
Query: 81 SQRRADN---ESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMV 137
+++ DN + ++ + +L+ E + ++ A+L + A
Sbjct: 124 LEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKA----- 178
Query: 138 VELQNILATLEMER 151
QNILA M+R
Sbjct: 179 ---QNILAQA-MQR 188
>gnl|CDD|240416 PTZ00432, PTZ00432, falcilysin; Provisional.
Length = 1119
Score = 35.5 bits (82), Expect = 0.21
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 30/105 (28%)
Query: 368 SQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRS 427
S+ E+E K LK R L+ +E +E+ Y K K +R
Sbjct: 577 SKYEKEFNKL------------VKDELKERLSHLT------KEQVDEMEKAYEKFKKERE 618
Query: 428 VED----------LQMKELQDQLETEQYFSTLYKTQAHELKEELD 462
+D L + +L ETE+ + LYK + LKE +D
Sbjct: 619 ADDDPEHLDSFPILSLSDLNK--ETEEIPTKLYKLSSDSLKENMD 661
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 35.7 bits (83), Expect = 0.22
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 14/128 (10%)
Query: 16 PNGGQANGELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILR 75
+ L+ + ++++ + Q EA AL +LE+ L
Sbjct: 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELE 197
Query: 76 HDLKE--SQRRADNESETKKKAEVNLQVISDMHEKLKTEAETAT----RLRK-----QSA 124
L++ + ++ +K+ E+ Q + +L +E ET +LRK S
Sbjct: 198 AQLEQLQEKAAETSQERKQKRKEITDQAAKRL--EL-SEEETRILIDQQLRKAGWEADSK 254
Query: 125 ELTVAKSA 132
L +K A
Sbjct: 255 TLRFSKGA 262
Score = 32.6 bits (75), Expect = 1.5
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 139 ELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELER--- 195
LQ + TL+ + + +E A QA ++ L ELE + Q L +LE+
Sbjct: 146 ALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQE 205
Query: 196 -NKHRELQLAEDNRHLGEKVSS 216
+ + + + ++ +
Sbjct: 206 KAAETSQERKQKRKEITDQAAK 227
>gnl|CDD|118064 pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat (Ehrlichia_rpt).
This entry represents 77 residues of an 80 amino acid
(240 nucleotide) tandem repeat, found in a variable
number of copies in an immunodominant outer membrane
protein of Ehrlichia chaffeensis, a tick-borne obligate
intracellular pathogen.
Length = 707
Score = 35.0 bits (79), Expect = 0.25
Identities = 66/340 (19%), Positives = 128/340 (37%), Gaps = 34/340 (10%)
Query: 203 LAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKE--CAS 260
+A +G+K + KE + E + ++ + E ++ E VS KE A
Sbjct: 123 IAHHESEVGDKPAKTSKEEENPEIEAE-DGEPAKDDGIEESHQEEDEIVSESSKEEFTAE 181
Query: 261 LSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLS 320
+ E E + E ++ KEE++ E+ +DL D++ ES +
Sbjct: 182 VKAEDLQPAVDGSIEHSSSEVGEEVSKTEKEESNPEVK--AEDLQPAVDDDVAHHESEVG 239
Query: 321 NGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSK--TLQSQVEQEQAKKF 378
+ + K+ E + + L+ + E S+ Q + E+E+
Sbjct: 240 D----------KPAETSKEEETPEVKAEDLQPAVDGSVEHSSSEIEEHQGETEKEEGIPE 289
Query: 379 SLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQD 438
S DL + + E + EEE + + + + ++ ++LQD
Sbjct: 290 SHAEDLQPAVDDIVEHPSSEPFV-------------AEEEVSETEKEENNPEVLAEDLQD 336
Query: 439 QLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDL-THRLQLAVARADSEALARS 497
+ E S E + E++E E E+E G +H +A S +
Sbjct: 337 AADGESGVSDQPAQVVEERESEIEEH---QGETEKEEGIPESHAEDDEIASDPSIEHFSA 393
Query: 498 IAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSN 537
+ V E EKE++ E++ +DL D++ ES + +
Sbjct: 394 EVGKEVSETEKEESNPEVKAEDLQPAVDGDVAHHESEVGD 433
>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein [Function
unknown].
Length = 827
Score = 35.1 bits (81), Expect = 0.26
Identities = 32/213 (15%), Positives = 67/213 (31%), Gaps = 15/213 (7%)
Query: 951 SIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNR 1010
Q + ++ +L L S EE+++L +LK ++ +
Sbjct: 194 LYQQSLLTLQNNLSSRTVLISGLPSELRSDEELKELFDKLKV------GEIDSDVLCRDL 247
Query: 1011 KDINTTCKGKSKASS---ADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQV 1067
+ K + K + + + K T ++ K + E+
Sbjct: 248 GTLQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPD 307
Query: 1068 VEENTSKL-KLQMELDSKDSE-IEQLQGKLAALGSETASLSSADVENDESYVQDEVRSRS 1125
+ ++ KL + K + I+ KL L +E + + EN + +S
Sbjct: 308 KKRPKHRIKKLNKGIFGKKVDAIDYYSAKLTKLDAEIENARKSLYEN-TPTKSGFITFKS 366
Query: 1126 VTQGDVIRADAKDIPRIFQLLYAGEGEARRPED 1158
+ A ++ R+ L A P D
Sbjct: 367 QASAQIA-AQSQIYSRVLGKLKVEIAPA--PND 396
>gnl|CDD|235999 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.
Length = 140
Score = 33.4 bits (77), Expect = 0.27
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 1030 KKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEE-----NTSKLKLQMELDS- 1083
+ EK + +Q+L R++ V+ + + E +L ++ + E SK K + E++
Sbjct: 54 EAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQ 113
Query: 1084 KDSEIEQLQGKLAALGS 1100
K + + QL+ ++ AL
Sbjct: 114 KQAALAQLEQQVDALSR 130
>gnl|CDD|226482 COG3973, COG3973, Superfamily I DNA and RNA helicases [General
function prediction only].
Length = 747
Score = 35.2 bits (81), Expect = 0.28
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 33 RREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESETK 92
RR + + + + E AL+ M +E + L ES + E
Sbjct: 2 RRAYATFFSDSTCRDTELKELEREERALKLFMSLIEPPIITLPDFEAESSQLI---VEAM 58
Query: 93 KKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKS 131
K+ + I + E+L+T + L VAK
Sbjct: 59 KRQIGSYADIRNTGEELETRETMYDIAEEHLKRLNVAKH 97
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 34.9 bits (81), Expect = 0.29
Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 39/210 (18%)
Query: 520 LMAKHRSDLSSKESLLSNGKEREVDYKKSIDQL----MKDREDLQQQINLLKEGKGAYGI 575
LM K L +++ V+ D++ +K+ E +++I GKGA
Sbjct: 297 LMYKAGDTLDIEDT--------RVNPNFRTDEVEVTWIKEEEVKRRKIPDHLIGKGAEAD 348
Query: 576 VYKAYDKNNKQYVAIKK-IFEAFRNKT-D----AQRTYREILFLKSFQRHPNIITMLDIY 629
+ K IK+ + + +R+ D +RT E L +R + T + IY
Sbjct: 349 IKKGEYLGRD--AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRA-GVPTPV-IY 404
Query: 630 KAVNNKDLYVVFEYMENDLNKVIRDKILKDVHIRYIMFQLCNG----LSYIHACKVMHRD 685
V+ ++ +V EY I K LKDV + +L ++ +H ++H D
Sbjct: 405 D-VDPEEKTIVMEY--------IGGKDLKDV-LEGNP-ELVRKVGEIVAKLHKAGIVHGD 453
Query: 686 LKPSNILIDKSCSIKIGDLGLARSLSDSKE 715
L SN ++ I D GL + SD E
Sbjct: 454 LTTSNFIVRDDRLYLI-DFGLGK-YSDLIE 481
>gnl|CDD|215766 pfam00169, PH, PH domain. PH stands for pleckstrin homology.
Length = 101
Score = 32.4 bits (74), Expect = 0.29
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 872 RLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDK 911
EGW+ K + R WKK+Y V+ +++Y
Sbjct: 2 IKEGWLLK--KGSGGRKSWKKRYFVLFDGVLLYYKDSKKS 39
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 34.3 bits (79), Expect = 0.32
Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 11/179 (6%)
Query: 153 TLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGE 212
L E L+ +I + R + +A + L L+AL ELE +++ QL + + + E
Sbjct: 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRE 73
Query: 213 KVSSLEK-------ECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLEL 265
++ E+ E L+ALN E++ K R L ++ L E++ LEKE L L
Sbjct: 74 RIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133
Query: 266 KAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKE 324
+ ++ + E + + E E+ + ++L K +L S+ + K+
Sbjct: 134 ERL----EKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKK 188
Score = 32.3 bits (74), Expect = 1.2
Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 22/174 (12%)
Query: 35 EMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESETKKK 94
E +LE R +++ + + A AL + LE L L + + + + E K+
Sbjct: 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKR 77
Query: 95 AEVNLQVISDMHE--KLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERD 152
AE L + D E L E + A E + EL + LE E +
Sbjct: 78 AEEKLSAVKDERELRALNIEIQIAKERINSL----------EDELAELMEEIEKLEKEIE 127
Query: 153 TLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAED 206
L++ + L+ +++ LE + + E + + +L E
Sbjct: 128 DLKERLERLEKNLAEAE----------ARLEEEVAEIREEGQELSSKREELKEK 171
Score = 31.6 bits (72), Expect = 2.0
Identities = 35/169 (20%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 185 RLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDN 244
+Q L+ E +R + R ++ + + ++ +L K L+AL ELE +++ QL +
Sbjct: 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNK--ALEALEIELEDLENQVSQLESEI 68
Query: 245 RHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQ-KSRMVNKEEASVEIVKELKD 303
+ + E++ E++ L A + + + E K R+ + E+ E+++E++
Sbjct: 69 QEIRERIKRAEEK-------LSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEK 121
Query: 304 LMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKE 352
L + E L N E E ++ + ++ ++ ++L + LKE
Sbjct: 122 LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170
Score = 30.0 bits (68), Expect = 6.6
Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 20/153 (13%)
Query: 340 REDLQQQINLL----KEGAELRQELEKSKTLQSQVEQE----QAKKFSLQSDLSVQTS-- 389
R+ L++ L K L ELE + SQ+E E + + + LS
Sbjct: 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER 89
Query: 390 EAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTL 449
E L + + L + + EE KL+ + +++ L+ L +
Sbjct: 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE----- 144
Query: 450 YKTQAHELKEELDERSRNILELEEERGDLTHRL 482
L+EE+ E EL +R +L +L
Sbjct: 145 -----ARLEEEVAEIREEGQELSSKREELKEKL 172
>gnl|CDD|224738 COG1825, RplY, Ribosomal protein L25 (general stress protein Ctc)
[Translation, ribosomal structure and biogenesis].
Length = 93
Score = 32.2 bits (74), Expect = 0.32
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 1149 GEGEARRPEDGGAELPAVLRGGDEKPGIIALKGHEFLNISYH 1190
G+G +RR G ++PAV+ GG ++P IAL HEF
Sbjct: 13 GKGASRRLRRAG-KIPAVVYGGGKEPVNIALDHHEFAKALRK 53
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 34.7 bits (80), Expect = 0.32
Identities = 74/387 (19%), Positives = 148/387 (38%), Gaps = 60/387 (15%)
Query: 260 SLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLM-AKHRSDLSSKESL 318
L+ ++ A Q ++ EVR +E R + K E +I K L + D+ +
Sbjct: 14 DLNEDVSAFQRKFVNEVRRCDE--VERKLRKLE--SKIKKLGIPLKDTGGKPDVPPSKEF 69
Query: 319 LSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKF 378
L +E +D + I ++ ++ E L+++IN L+ E L++ K+ + +E ++
Sbjct: 70 LDL-EEEILDLEAEIKEVEENLESLEKEINELE---EWLNVLDEEKSFLDENLEELSELS 125
Query: 379 SLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQD 438
+L D +L+ E VA + ++ E + + + ++ E+++
Sbjct: 126 NLDIDFK-------YLRGAEGLKLGFVAGVINREK--LEAFERELWRACRGYIRQAEIEE 176
Query: 439 QLETEQY-----FSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEA 493
LE + F K ++K+ LD + ++ E SE
Sbjct: 177 PLEDPKKTVFIIFFVG-KEDLDKVKKILDSFGFELYDVPE------------TEGERSEL 223
Query: 494 LARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKER-------EVDYK 546
+ S + + EL++ E L+ ++ K +L + + +S K D K
Sbjct: 224 I--SKVNKRIEELQRVLEQTESHLEKVLVKIADELLAWDEQVSKEKAVYETLNLFNYDTK 281
Query: 547 KSIDQLMKDREDLQQQINLLKEGKGAYGIVYK--AYDKNNKQ---YVAIKKIFEAFRNKT 601
I + +DL++ L+ G V + N++ Y+ K F+
Sbjct: 282 TLIAEGWVPAKDLEKLKAALENATEGSGSVPSIENDIETNEEPPTYLKNNKFTAPFQMIV 341
Query: 602 DAQR--TYREILFLKSFQRHPNIITML 626
DA YREI P T++
Sbjct: 342 DAYGIPKYREI--------DPTPFTII 360
Score = 33.1 bits (76), Expect = 1.2
Identities = 34/224 (15%), Positives = 87/224 (38%), Gaps = 33/224 (14%)
Query: 899 SKKIIFYNSENDKQNTDPELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKD 958
+K+ S+ K + + D+ + L +E +D + I ++ ++
Sbjct: 37 ERKLRKLESKIKKLGIPLKDT------GGKPDVPPSKEFLDL-EEEILDLEAEIKEVEEN 89
Query: 959 REDLQQQINLLKE----------ELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIM 1008
E L+++IN L+E L ++ E+ L K + + + +A ++
Sbjct: 90 LESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVI 149
Query: 1009 NRKDINT-------TCKGKSKASSADVRKKEKECRK------LQQELTQER---EKFNQV 1052
NR+ + C+G + + + ++ + +++L + + + F
Sbjct: 150 NREKLEAFERELWRACRGYIRQAEIEEPLEDPKKTVFIIFFVGKEDLDKVKKILDSFGFE 209
Query: 1053 VVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLA 1096
+ + E + + N +LQ L+ +S +E++ K+A
Sbjct: 210 LYDVPETEGERSELISKVNKRIEELQRVLEQTESHLEKVLVKIA 253
Score = 31.2 bits (71), Expect = 4.4
Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 28/221 (12%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQR 83
K+ L+ E LE +++ E E++ L + + L++ + L +L+E
Sbjct: 65 PSKEFLDLEEEI-LDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSE 123
Query: 84 RADNESETKK---KAEVNLQVIS-----DMHEKLKTEAETATRLRKQSAELTVAKSAGEQ 135
++ + + K + L ++ + E + E A R + AE+ ++
Sbjct: 124 LSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFERELWRACRGYIRQAEIEEPLEDPKK 183
Query: 136 MVVELQNILATLEMERDTLQQEVATLQAKI------SQERSSKTQAVNLHKELEGRLQAL 189
V I + + D +++ + + ++ ERS VN R++ L
Sbjct: 184 TVFI---IFFVGKEDLDKVKKILDSFGFELYDVPETEGERSELISKVN------KRIEEL 234
Query: 190 NTELERNK---HRELQLAEDNRHLGEKVSSLEKECRLQALN 227
LE+ + + L D ++ S EK + LN
Sbjct: 235 QRVLEQTESHLEKVLVKIADELLAWDEQVSKEKA-VYETLN 274
>gnl|CDD|203593 pfam07200, Mod_r, Modifier of rudimentary (Mod(r)) protein. This
family represents a conserved region approximately 150
residues long within a number of eukaryotic proteins
that show homology with Drosophila melanogaster Modifier
of rudimentary (Mod(r)) proteins. The N-terminal half of
Mod(r) proteins is acidic, whereas the C-terminal half
is basic, and both of these regions are represented in
this family. Members of this family include the Vps37
subunit of the endosomal sorting complex ESCRT-I, a
complex involved in recruiting transport machinery for
protein sorting at the multivesicular body (MVB). The
yeast ESCRT-I complex consists of three proteins (Vps23,
Vps28 and Vps37). The mammalian homologue of Vps37
interacts with Tsg101 (Pfam: PF05743) through its mod(r)
domain and its function is essential for lysosomal
sorting of EGF receptors.
Length = 150
Score = 33.0 bits (76), Expect = 0.34
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 202 QLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASL 261
+L +D L E V L + +Q LN E + + LAE+N ++ L+ +
Sbjct: 11 ELLQDEDALLEFVLELPQ---VQDLNLEKDALLAQNESLAEENLEKEPQLEELKAQLRDK 67
Query: 262 SLELKAAQAQYQ 273
ELK + +Y+
Sbjct: 68 YEELKKLEEKYE 79
>gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein. Members of
this family are long (~850 residue) bacterial proteins
from the alpha Proteobacteria. Each has 2-3 predicted
transmembrane helices near the N-terminus and a long
C-terminal region that includes stretches of
Gln/Gly-rich low complexity sequence, predicted by TMHMM
to be outside the membrane. In Bradyrhizobium japonicum,
two tandem reading frames are together homologous the
single members found in other species; the cutoffs
scores are set low enough that the longer scores above
the trusted cutoff and the shorter above the noise
cutoff for this model.
Length = 851
Score = 34.6 bits (79), Expect = 0.35
Identities = 49/249 (19%), Positives = 93/249 (37%), Gaps = 42/249 (16%)
Query: 20 QANGELKDLLER--ERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHD 77
A LKD LER E+ QL ++ R A +T +R QL N
Sbjct: 507 AAQDALKDALERGASDEEIKQLTDKLRA---------AMQTYMRQLAQQLRNN------- 550
Query: 78 LKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMV 137
Q + TK + +LQ + D E L + +Q++
Sbjct: 551 --PQQLARPLDPNTKVLRQQDLQNMMDQIENLARSG---------------DRDQAKQLL 593
Query: 138 VELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNK 197
+LQ ++ L+M + Q++ + Q+ + + + ++L L+ + R++
Sbjct: 594 SQLQQMMNNLQMGQPGQGQQMGDQSGDMEQQMNKLGELMRKQQQLRDETFKLDQDQRRDR 653
Query: 198 HRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKE 257
R + ++ G+ + + + Q + + R+LQ E R LG+ L+ E
Sbjct: 654 MRG---QDGEQNFGDDMPQQDGQPNGQPNLHD----RLRKLQQEEAKRGLGQSQGGLKGE 706
Query: 258 CASLSLELK 266
L L+
Sbjct: 707 LGQLGQGLQ 715
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 34.8 bits (80), Expect = 0.37
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 28 LLERERREMSQLE----ERQRQLSEQ--YEAVSARETALRDEM-GQLEKNLTILRHDLKE 80
LLE +RRE+ +L ER+RQ EQ E A A R + ++EK L++ LK+
Sbjct: 250 LLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKK 309
Query: 81 SQRRADN 87
+ R ADN
Sbjct: 310 ASRSADN 316
>gnl|CDD|241437 cd13283, PH_GPBP, Goodpasture antigen binding protein Pleckstrin
homology (PH) domain. The GPBP (also called Collagen
type IV alpha-3-binding protein/hCERT; START
domain-containing protein 11/StARD11; StAR-related lipid
transfer protein 11) is a kinase that phosphorylates an
N-terminal region of the alpha 3 chain of type IV
collagen, which is commonly known as the goodpasture
antigen. Its splice variant the ceramide transporter
(CERT) mediates the cytosolic transport of ceramide.
There have been additional splice variants identified,
but all of them function as ceramide transport proteins.
GPBP and CERT both contain an N-terminal PH domain,
followed by a serine rich domain, and a C-terminal START
domain. However, GPBP has an additional serine rich
domain just upstream of its START domain. They are
members of the oxysterol binding protein (OSBP) family
which includes OSBP, OSBP-related proteins (ORP),
Goodpasture antigen binding protein (GPBP), and Four
phosphate adaptor protein 1 (FAPP1). They have a wide
range of purported functions including sterol transport,
cell cycle control, pollen development and vessicle
transport from Golgi recognize both PI lipids and ARF
proteins. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 100
Score = 31.8 bits (73), Expect = 0.40
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 888 HGWKKQYVVVSSKKIIFYNSENDKQ 912
HGW+ +Y V+ + +Y SE++ Q
Sbjct: 13 HGWQDRYFVLKDGTLSYYKSEDETQ 37
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 34.1 bits (78), Expect = 0.40
Identities = 38/178 (21%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 345 QQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHE 404
+ + + E +L+++ E+ L+ ++E+ Q +K L +L +E ++ R ++L E
Sbjct: 122 KTLQRVPEYMDLKEDYEE---LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE 178
Query: 405 VAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLET--EQYFSTLYKTQAHELKEELD 462
+ L E + + E + LK + EL+ +E E+ S L K + ++++
Sbjct: 179 NSRLEEMLKKLPGEVYDLKKR-------WDELEPGVELPEEELISDLVKETLNLAPKDIE 231
Query: 463 ERSRNILELEEERGDLTHRLQLAV-ARADSE---ALARSIAEETVGELEKEKTMKELE 516
+ E E+E L + +A +R D+ + + EE + E+++E E E
Sbjct: 232 GQGYIYAEDEKEVEILLGTVYIAAPSREDAVEELEIIKEAIEEVIPEIDEEGEGGESE 289
Score = 33.3 bits (76), Expect = 0.66
Identities = 18/107 (16%), Positives = 36/107 (33%)
Query: 31 RERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESE 90
+ E L+E +L E+ E + + L E+ +LE ++ LK + E
Sbjct: 125 QRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE 184
Query: 91 TKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMV 137
KK + + ++L+ E A + +
Sbjct: 185 MLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKETLNLAPKDIE 231
Score = 31.8 bits (72), Expect = 2.1
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 140 LQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHR 199
LQ + ++++ D + L+ K+ + + K + + +ELE + + L+R +
Sbjct: 124 LQRVPEYMDLKEDYEE-----LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE 178
Query: 200 ELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKH 235
+L E + L +V L+K R L +E +
Sbjct: 179 NSRLEEMLKKLPGEVYDLKK--RWDELEPGVELPEE 212
Score = 31.0 bits (70), Expect = 3.5
Identities = 14/82 (17%), Positives = 37/82 (45%)
Query: 1024 SSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDS 1083
D+++ +E ++ +EL +E+E+ + + + + E +E+Q ++ +L+ L
Sbjct: 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188
Query: 1084 KDSEIEQLQGKLAALGSETASL 1105
E+ L+ + L
Sbjct: 189 LPGEVYDLKKRWDELEPGVELP 210
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 34.3 bits (79), Expect = 0.41
Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 49/290 (16%)
Query: 79 KESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVV 138
+ +Q S A++ +S + TR K T A +
Sbjct: 204 QAAQAGTTGSSSADDLADL----LSKFRLDSWDKGSRFTRTEKVEQAATAAAEVPPAEMD 259
Query: 139 ELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQA---LNTELER 195
++ E E + LQ+++ L++ I + S + K++ L N ELE
Sbjct: 260 TEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEE 319
Query: 196 NKHRELQLAEDNRHLGEKVSSLEKEC-----RLQALNTELER------NKHRELQLAEDN 244
+ + E V+ L+ RL L + E +++R L+ N
Sbjct: 320 EYKIKKRTVELLPDAENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEYRSLKEKNRN 379
Query: 245 RHLG-----EKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVK 299
+ +++ L + L EL+ + Y+Q + +E KS
Sbjct: 380 KEDETQRQLDEIKKLRNKIEELESELQTKEQLYKQLLDEYENAPKS-------------- 425
Query: 300 ELKDLMAKHRSDLSSK-ESLLSNGKEREVDYKKSIDQLMKDREDLQQQIN 348
RS + + ++ N K+++ D ID+++ D LQ++IN
Sbjct: 426 -------VSRSAYTRRILEIIKNIKKQKED----IDKILSDTRSLQKEIN 464
Score = 32.4 bits (74), Expect = 1.5
Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 13/166 (7%)
Query: 950 KSIDQLMKDR----EDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLA 1005
+ + K+R E LQ+QI+ L+ + + + + + KQ+ E+L + N
Sbjct: 259 DTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVN-EELTTVRQEN--E 315
Query: 1006 EIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQ---ELTQEREKFNQVVVKCQKELQE 1062
E+ I + +V K + + EL Q+ E ++ + L+E
Sbjct: 316 ELEEEYKIKKRTVELLPDAENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEYRSLKE 375
Query: 1063 LQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSA 1108
+E +L E+ ++IE+L+ +L L
Sbjct: 376 KNRNKEDETQRQLD---EIKKLRNKIEELESELQTKEQLYKQLLDE 418
Score = 30.9 bits (70), Expect = 5.0
Identities = 35/171 (20%), Positives = 68/171 (39%), Gaps = 31/171 (18%)
Query: 220 ECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAH 279
E ++TE +R K RE +L L E++ LE + E+KA ++ +Q
Sbjct: 252 EVPPAEMDTEEDRTKEREAELEA----LQEQIDELESSIEEVLSEIKALASKIKQVNEEL 307
Query: 280 EETQKSRMVNKEE--------------------------ASVEIVKELKDLMAKHRSDLS 313
++ +EE AS E + EL HR+ L
Sbjct: 308 TTVRQENEELEEEYKIKKRTVELLPDAENNVAKLQALVVASSERLLELAQQWEAHRTPLI 367
Query: 314 SK-ESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKS 363
+ SL + +E + ++ +D++ K R +++ + L+ +L ++L
Sbjct: 368 DEYRSLKEKNRNKEDETQRQLDEIKKLRNKIEELESELQTKEQLYKQLLDE 418
Score = 30.9 bits (70), Expect = 5.4
Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 26/286 (9%)
Query: 309 RSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQS 368
S L S S LS +E +++ Q ++D ++Q K LRQ + T S
Sbjct: 158 PSLLESNSSRLSFAQEWRLEW---NSQGLEDYRKRKRQRLDQKAAEYLRQAAQAGTTGSS 214
Query: 369 --QVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKR 426
+ KF L + + + + + A EE + +
Sbjct: 215 SADDLADLLSKF----RLDSWDKGSRFTRTEKVEQAATAAAEVPPAEMDTEEDRTKEREA 270
Query: 427 SVEDLQ--MKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQL 484
+E LQ + EL+ +E ++ ++ EEL + ELEEE
Sbjct: 271 ELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEE---------Y 321
Query: 485 AVARADSEALARSIAEETVGELEK--EKTMKEL-ELKDLMAKHRSDLSSK-ESLLSNGKE 540
+ + E L AE V +L+ + + L EL HR+ L + SL +
Sbjct: 322 KIKKRTVELLPD--AENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEYRSLKEKNRN 379
Query: 541 REVDYKKSIDQLMKDREDLQQQINLLKEGKGAYGIVYKAYDKNNKQ 586
+E + ++ +D++ K R +++ + L+ + Y + Y+ K
Sbjct: 380 KEDETQRQLDEIKKLRNKIEELESELQTKEQLYKQLLDEYENAPKS 425
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869). This
family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 34.5 bits (79), Expect = 0.46
Identities = 47/280 (16%), Positives = 107/280 (38%), Gaps = 17/280 (6%)
Query: 851 SETASLSSADVENDESYVQDSRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSEND 910
S A + E++ RL + K +++H + ++ + + E
Sbjct: 413 SSVALTGPVEHEDNLESKLSDRLPEVLQSVLKLVMEKHIISEISEILEDIEAELDSLERS 472
Query: 911 KQNTDPELELKDL--MAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINL 968
D E+ + + + S + + L R ++ ++ + +DL
Sbjct: 473 SNGDDENEEVAMVGSLVEESSAVIERSQELEGAVSRISEFTSVLEHEVTVCQDLLDGKAD 532
Query: 969 LKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADV 1028
L++ +++ S + E + K L + E K K K ++
Sbjct: 533 LEKFIQEFSLTLEWVVNQEKSL----------QDVSVEASEIKKNFLGLKSSEKEINSPD 582
Query: 1029 RKKEKECRKLQQELTQ---EREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDS-- 1083
K C +EL E+E + + KC+ +L+E ++++ E +L+ ELD+
Sbjct: 583 EVKGAVCISTLEELETLKSEKENLDGELSKCKDDLEESKNKLQETEKKLEELKSELDASQ 642
Query: 1084 KDSEIEQLQGKLAALGSETASLSSADVENDESYVQDEVRS 1123
+ + + + Q K E+ L + D+E + +Q+++ S
Sbjct: 643 ESNSLAETQLKCMVESYESLELRAKDLEAEHKSLQEKISS 682
Score = 31.8 bits (72), Expect = 2.5
Identities = 47/291 (16%), Positives = 102/291 (35%), Gaps = 16/291 (5%)
Query: 209 HLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAA 268
H+ ++S + ++ + + E N E + L E+ S++ + S EL+ A
Sbjct: 450 HIISEISEILEDIEAELDSLERSSNGDDENEEVAMVGSLVEESSAVIER----SQELEGA 505
Query: 269 QAQYQQEVR-----AHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGK 323
++ + E ++ + + L S K
Sbjct: 506 VSRISEFTSVLEHEVTVCQDLLDGKADLEKFIQEFSLTLEWVVNQEKSLQDVSVEASEIK 565
Query: 324 -EREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQS----QVEQEQAKKF 378
+ D I+ L+E L+ E E S +E+ + K
Sbjct: 566 KNFLGLKSSEKEINSPDEVKGAVCISTLEELETLKSEKENLDGELSKCKDDLEESKNKLQ 625
Query: 379 SLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQD 438
+ L SE + ++ + E+ ++E L+ + ++ L+D
Sbjct: 626 ETEKKLEELKSELDASQESNSLAETQLKCMVESYESLELRAKDLEAEHKSLQEKISSLED 685
Query: 439 QLETEQYFSTLYKTQAHELKEELD--ERSRNILELEEERGDLTHRLQLAVA 487
+LE E+ + EL+E+++ E+ N+ +L+EE + ++A A
Sbjct: 686 ELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQKIKQEKEIAAA 736
Score = 31.8 bits (72), Expect = 2.7
Identities = 58/304 (19%), Positives = 120/304 (39%), Gaps = 6/304 (1%)
Query: 808 QKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVENDESY 867
+ + E+ + + L+ + D E S S ++E S
Sbjct: 449 KHIISEISEILEDIEAELDSLERSSNGDDENEEVAMVGSLVEESSAVIERSQELEGAVSR 508
Query: 868 VQD--SRLEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDKQNTDPELELKDLMA 925
+ + S LE V++ + +K S N E Q+ E
Sbjct: 509 ISEFTSVLEHEVTVCQDLLDGKADLEKFIQEFSLTLEWVVNQEKSLQDVSVEASEIKKNF 568
Query: 926 KHRSDLSSKESLLSNGKEREVDYK-KSIDQLMKDREDLQQQINLLKEELRKSSNSSEEME 984
+ + K + ++ L ++E+L +++ K++L +S N +E E
Sbjct: 569 LGLKSSEKEINSPDEVKGAVCISTLEELETLKSEKENLDGELSKCKDDLEESKNKLQETE 628
Query: 985 KLHKQLKQEQLLKAQAVNKLAEIMNR--KDINTTCKGKSKASSADVRKKEKECRKLQQEL 1042
K ++LK +L +Q N LAE + + + + ++K A+ + +++ L+ EL
Sbjct: 629 KKLEELKS-ELDASQESNSLAETQLKCMVESYESLELRAKDLEAEHKSLQEKISSLEDEL 687
Query: 1043 TQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSET 1102
+ER+ +++ KC++ ++++ EEN KL + + ++ EI KLA
Sbjct: 688 EKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQKIKQEKEIAAAAEKLAECQETI 747
Query: 1103 ASLS 1106
SL
Sbjct: 748 LSLG 751
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS;
Provisional.
Length = 914
Score = 34.5 bits (79), Expect = 0.46
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 38 QLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILR------HDLKESQRRADNESET 91
QL ++Q+QLS+Q V+A + R GQ T +DL E +R ES
Sbjct: 132 QLRQQQQQLSQQ--IVAAADEIARLAQGQANNAATSAGATQAGIYDLIEQDQRQAAESAL 189
Query: 92 KKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATL---- 147
+ +++L+ ++ M+E L+ A LR Q + + ++ L+ L
Sbjct: 190 DRLIDIDLEYVNQMNE-LRLSA-----LRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKIL 243
Query: 148 -----EMERDTLQQEVATLQAKISQERSSKTQAVNLHK---ELEGRLQAL 189
+E ++ +VAT +SQ + L++ E+ LQ L
Sbjct: 244 QRRQIRIEDPGVRAQVATTLTTVSQYSD----LLALYQQDSEISNHLQTL 289
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 34.2 bits (79), Expect = 0.47
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 791 FKSKHEREKF---NQVVVKCQKELQELQSQVVEENTSKL--KLQMELDSKDSEIEQLQGK 845
++ ++ ++ Q VK ++E +++ V+ ++ KL KLQ EL+ +E L+ +
Sbjct: 524 HDARQQQAQYLALKQPAVKKKEEAAAPKAETVKRSSKKLSYKLQRELEQLPQLLEDLEAE 583
Query: 846 LAALGSETAS 855
+ AL ++ A
Sbjct: 584 IEALQAQVAD 593
Score = 34.2 bits (79), Expect = 0.53
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 1044 QEREKF---NQVVVKCQKELQELQSQVVEENTSKL--KLQMELDSKDSEIEQLQGKLAAL 1098
Q++ ++ Q VK ++E +++ V+ ++ KL KLQ EL+ +E L+ ++ AL
Sbjct: 528 QQQAQYLALKQPAVKKKEEAAAPKAETVKRSSKKLSYKLQRELEQLPQLLEDLEAEIEAL 587
Query: 1099 GSETAS 1104
++ A
Sbjct: 588 QAQVAD 593
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the synaptonemal
complex. Synaptonemal complexes are structures that are
formed between homologous chromosomes during meiotic
prophase.
Length = 787
Score = 33.9 bits (77), Expect = 0.58
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 8/188 (4%)
Query: 882 KQNIKRHGWKKQYVVVSSKKIIFYNSENDKQNTDPELELKDLMAKHRSDLSSKESLLSNG 941
K +++ K + K++ N E ++ +D LELK + +E +L
Sbjct: 477 KTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQI 536
Query: 942 KEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEME----KLHKQLKQEQL-- 995
+ E D+L RE+ Q+ + +K +L KS ++ +E K KQ+K +
Sbjct: 537 ENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKC 596
Query: 996 --LKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVV 1053
LK Q NK I N K K A + + E + KL+ EL ++KF +++
Sbjct: 597 NNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEII 656
Query: 1054 VKCQKELQ 1061
QKE++
Sbjct: 657 DNYQKEIE 664
Score = 30.5 bits (68), Expect = 7.2
Identities = 81/369 (21%), Positives = 158/369 (42%), Gaps = 29/369 (7%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLT-------ILRH 76
+L LLE R + +QLEE+ + E + + ++ L E+ ++ +L L
Sbjct: 258 DLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEE 317
Query: 77 DLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETAT-----RLRKQSAELTVAKS 131
DL+ + + +E K+ L H + TE E T LR + L +
Sbjct: 318 DLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNED 377
Query: 132 AGEQMVVELQNILATLEM------ERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGR 185
+ + +ELQ + LE ++ +E+ + A+ + K Q + +EL+G+
Sbjct: 378 QLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGK 437
Query: 186 LQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECR-LQALNTELERNKHRELQLAEDN 244
Q L L+ RE ++ + L +S E + ++ L TELE+ K + ++L
Sbjct: 438 EQELIFLLQA---REKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHC 494
Query: 245 RHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDL 304
L + L +E + ++LELK QE + + Q+ RM+ + E E L+D
Sbjct: 495 DKLLLENKELTQEASDMTLELKK-----HQEDIINCKKQEERMLKQIENLEEKEMNLRDE 549
Query: 305 MAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSK 364
+ R + K + ++ + +SI+ + +E +Q L + L++++E
Sbjct: 550 LESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKE--KQMKILENKCNNLKKQIENKN 607
Query: 365 TLQSQVEQE 373
++ QE
Sbjct: 608 KNIEELHQE 616
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 33.5 bits (77), Expect = 0.59
Identities = 37/190 (19%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 931 LSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQL 990
+ +++S LS ++ + + + I+ L E++Q +I+ L++E+ +S ++++K +L
Sbjct: 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92
Query: 991 K-----QEQLLKAQA------------VNKLAEIMNRKDINTTCKGKSKASSAD------ 1027
K +++LLK +A ++ + + D+ + S AD
Sbjct: 93 KENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQ 152
Query: 1028 VRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSE 1087
++ +K + Q L + E + + + +L L SQ E+N L + S E
Sbjct: 153 QKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGE 212
Query: 1088 IEQLQGKLAA 1097
L+ + A
Sbjct: 213 KAALEEQKAL 222
>gnl|CDD|224234 COG1315, COG1315, Uncharacterized conserved protein [Function
unknown].
Length = 543
Score = 34.0 bits (78), Expect = 0.60
Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 23/158 (14%)
Query: 273 QQEVRAHEE------TQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKERE 326
++V A E + + V + VE +KEL + ++ H L LL + +
Sbjct: 381 FEDVYAREIGSDIGSLKTAIDVGMDPEIVERLKELTEEISLHEERLKKLTKLLVALVKVK 440
Query: 327 VDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSK-TLQSQVEQEQAKKFSLQSDLS 385
++ KK+I L + L + +K TL++ +E+ +A+ LQ +L
Sbjct: 441 IESKKNI---------------LPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQEELE 485
Query: 386 VQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLK 423
V E + + + + S +A + +E+ ++
Sbjct: 486 VVGIEGS-VSVKNQVYSGVKIYFGDAYQETIKEHGNVE 522
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 33.7 bits (77), Expect = 0.70
Identities = 76/329 (23%), Positives = 140/329 (42%), Gaps = 50/329 (15%)
Query: 213 KVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKV----SSLEKECASLSLELKAA 268
K+ S ++ L LN E E R + D H+ + +L+KE L LE K
Sbjct: 25 KMKSAKEAAELTLLNAEQEAVNLRG-KAERDAEHIKKTAKRESKALKKE---LLLEAKEE 80
Query: 269 QAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVD 328
+Y++E+ ++++ + E E L + +LSSKE L + ++ D
Sbjct: 81 ARKYREEIEQEFKSERQELKQIESRLTERATSLD----RKDENLSSKEKTLESKEQSLTD 136
Query: 329 YKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQT 388
K ID+ + E L++Q + ELE+ L Q +A++ L
Sbjct: 137 KSKHIDEREEQVEKLEEQ---------KKAELERVAALS----QAEAREIILAET----- 178
Query: 389 SEAAHLKAREEQLSHEVAM-LREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFS 447
E +L+HE+A +REA+R +++ K+ + M+ L + TEQ +
Sbjct: 179 ---------ENKLTHEIATRIREAEREVKDRSDKMAKDLLAQ--AMQRLAGEYVTEQTIT 227
Query: 448 TLYKTQAHELKEELDERSRNILELEEERG-----DLTHRLQLAVARADSEALARSIAEET 502
T++ + + RNI LE G D T + V + + + R IA T
Sbjct: 228 TVHLPDDNMKGRIIGREGRNIRTLESLTGIDVIIDDTPEV---VVLSGFDPIRREIARMT 284
Query: 503 VGELEKEKTMKELELKDLMAKHRSDLSSK 531
+ L K+ + +++L+ K+R ++ ++
Sbjct: 285 LESLIKDGRIHPARIEELVEKNRLEMDNR 313
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 33.6 bits (77), Expect = 0.73
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 91 TKKKAEVNLQV---ISDMH-EKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILAT 146
T KK E+ +Q +SD EK+ EAE ++ EL AK+ E ++ ++ L+
Sbjct: 527 TGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSD 586
Query: 147 L-----EMERDTLQQEVATLQAKISQERSSKTQAVNLHKELE 183
L + ++D L+Q++ L++ +S E + + K+L+
Sbjct: 587 LKDKISDADKDELKQKITKLRSTLSSEDVDSIK--DKTKQLQ 626
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA
binding. This is the C-terminal conserved coiled coil
region of a family of TATA element modulatory factor 1
proteins conserved in eukaryotes. The proteins bind to
the TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding of
TATA binding protein. TMF1_TATA_bd is the most conserved
part of the TMFs. TMFs are evolutionarily conserved
golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells. The Rab6-binding
domain appears to be the same region as this C-terminal
family.
Length = 121
Score = 31.8 bits (73), Expect = 0.76
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 127 TVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQA---KISQERSSKTQAVNLHKELE 183
T Q+V L + L LE E +L+ E+A L+A + QE T+ +EL+
Sbjct: 9 TSGAGPNVQLVERLSSTLRRLEGELASLKDELARLEAERDEARQEIVKLTEENEELRELK 68
Query: 184 GRLQALNTELERNKHRE---LQLAEDNRHLGEKVSSLE 218
++ L ELE + R L+L LGEK +E
Sbjct: 69 KEIEELEKELEDLEQRYETTLEL------LGEKSERVE 100
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 33.6 bits (77), Expect = 0.80
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 399 EQLSHEVA-MLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHEL 457
+ H+V M+ E + NI + + ++ + + Q ELQ+ +TE +Q ++
Sbjct: 857 NDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEA------LSQNNKY 910
Query: 458 KEELDERSRNILELEEE 474
EE + R E
Sbjct: 911 NEEKSAQERMPGADSPE 927
>gnl|CDD|241425 cd13271, PH2_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2
Pleckstrin homology (PH) domain, C-terminal repeat. The
binding of TAPP1 (also called PLEKHA1/pleckstrin
homology domain containing, family A (phosphoinositide
binding specific) member 1) and TAPP2 (also called
PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4,
5)P3, function as negative regulators of insulin and
PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin
complex). TAPP1 and TAPP2 contain two sequential PH
domains in which the C-terminal PH domain specifically
binds PtdIns(3,4)P2 with high affinity. The N-terminal
PH domain does not interact with any phosphoinositide
tested. They also contain a C-terminal PDZ-binding motif
that interacts with several PDZ-binding proteins,
including PTPN13 (known previously as PTPL1 or FAP-1) as
well as the scaffolding proteins MUPP1 (multiple
PDZ-domain-containing protein 1), syntrophin and
utrophin. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 114
Score = 31.5 bits (72), Expect = 0.80
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 882 KQNIKRHGWKKQYVVVSSKKIIFYNSENDK 911
KQ R WK++Y ++ I +Y SE DK
Sbjct: 16 KQGAVRKNWKRRYFILDDNTISYYKSETDK 45
>gnl|CDD|215738 pfam00130, C1_1, Phorbol esters/diacylglycerol binding domain (C1
domain). This domain is also known as the Protein kinase
C conserved region 1 (C1) domain.
Length = 53
Score = 29.7 bits (67), Expect = 0.82
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 1182 HEFLNISYHMPTTCEVCPKPIWHIIRP 1208
H F++ ++ PT C+ C + +W + +
Sbjct: 1 HHFVHRTFKSPTFCDHCGEFLWGLGKQ 27
>gnl|CDD|224086 COG1164, COG1164, Oligoendopeptidase F [Amino acid transport and
metabolism].
Length = 598
Score = 33.5 bits (77), Expect = 0.92
Identities = 63/339 (18%), Positives = 115/339 (33%), Gaps = 72/339 (21%)
Query: 321 NGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSL 380
N E Y + L E + + L+E EL + LE + + S + +A
Sbjct: 3 NRSEVPEKYTWDLSDLYPGDELWEAEF--LEESKELLKALEFYELILSAEDLLEA--LEE 58
Query: 381 QSDLSVQTSEAAHLKAREEQLSHEV--AMLREAKRNIEEEYHKLKTKRSVEDLQMKELQD 438
L EE L A ++ + D + ++L
Sbjct: 59 YEKL-------------EELLGRLYAYASMKLST--------------DTTDEEAQKLYQ 91
Query: 439 QLETEQY-FSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARS 497
+LE FS+ EL E +E +++L E D L+ R
Sbjct: 92 KLEEFYADFSSALSFFEPELLELDEEVIQSLLTSGPELADYRFYLEELFRRK-------- 143
Query: 498 IAEETVGELEKEKTMKELELKDLMAKHR------SDLSSKESLLSNGKEREVDYKKSIDQ 551
E+EK + +L A + SDL+ + + GK+ ++ +
Sbjct: 144 ---PHQLSAEEEKLLAQLSPVGNSASNIFFDLTNSDLTFPDIGDAKGKKLTLEQ---LLN 197
Query: 552 LM--KDREDLQQQINLLKEGKGAYGIVYKAYDKNNKQYVAI---KKIFEAFRNKTDAQRT 606
L+ DRE K AY +YKAY+K+ A+ AF + R
Sbjct: 198 LLEDPDREVR----------KAAYEALYKAYEKHRNTLAALLNTLVKVLAFLARA---RN 244
Query: 607 YREILFLKSFQRHPNIITMLDIYKAVNNKDLYVVFEYME 645
Y +++ + + + ++ ++V L ++ Y +
Sbjct: 245 YDDVIDSALLRNEVDREVVDNLIESVKEAFLPLLHRYYK 283
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 33.1 bits (76), Expect = 0.94
Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 950 KSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMN 1009
++++ + +D E L + +NL+ K + +++ L+Q + + +
Sbjct: 154 ENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQ--------LADELNLCD 205
Query: 1010 RKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVE 1069
++ K + + S V+ EK RK +EL QE ++ + + EL ++ E
Sbjct: 206 PLELE---KARQELRSLSVKISEK--RKQLEELQQELQELTIAIEALTNKKSELLEEIAE 260
Query: 1070 ENTSKLK 1076
+ +
Sbjct: 261 AEKIREE 267
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 33.2 bits (77), Expect = 0.95
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 43/182 (23%)
Query: 265 LKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSS---------- 314
+K A+ + ++ + EE +K K+EA +E +E+ L + +L
Sbjct: 33 IKEAEEEAKRIL---EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEK 89
Query: 315 ----KESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEG-----AELRQELEKSKT 365
KE L E ++ +++ K+ E QQ++ +E E QELE+
Sbjct: 90 RLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI-- 147
Query: 366 LQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTK 425
S + E+AK+ L+ EE+ HE A+L + IEEE + K
Sbjct: 148 --SGLTAEEAKEILLEK--------------VEEEARHEAAVL---IKEIEEEAKEEADK 188
Query: 426 RS 427
++
Sbjct: 189 KA 190
Score = 32.4 bits (75), Expect = 1.6
Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 24 ELKDLLERERREM-SQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQ 82
+L++ E+E RE ++L++ +++L ++ E + + L +LEK L +E +
Sbjct: 68 KLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELE 127
Query: 83 RRADNESETKKKAEVNLQVIS-------------DMHEKLKTEAETATRLRKQSAELTVA 129
++ + E ++ L+ IS + E+ + EA + ++ A+
Sbjct: 128 KKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEAD 187
Query: 130 KSA 132
K A
Sbjct: 188 KKA 190
Score = 32.4 bits (75), Expect = 1.7
Identities = 21/94 (22%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 900 KKIIFYNSENDKQNTDPELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDR 959
+ ++ E K + E EL++ R++L E L ++E + + ++ L K
Sbjct: 57 EALLEAKEEIHKLRNEFEKELRE----RRNELQKLEKRL---LQKEENLDRKLELLEKRE 109
Query: 960 EDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQE 993
E+L+++ L+++ ++ EE+E+L ++ QE
Sbjct: 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 31.7 bits (73), Expect = 2.7
Identities = 43/189 (22%), Positives = 88/189 (46%), Gaps = 17/189 (8%)
Query: 329 YKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQT 388
KK + +K+ E+ ++I L+E + + ++K L+++ E+ + + +L +
Sbjct: 25 RKKIAEAKIKEAEEEAKRI--LEEAKKEAEAIKKEALLEAK-EEIHKLRNEFEKELRERR 81
Query: 389 SEAAH----LKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQD-QLETE 443
+E L +EE L ++ +L + + +E++ +L+ K+ + + +EL++ E
Sbjct: 82 NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQL 141
Query: 444 QYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRL-QLAVARADSEA---LARSI- 498
Q + A E KE L E+ E E L + + A AD +A LA++I
Sbjct: 142 QELERISGLTAEEAKEILLEKVEE--EARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQ 199
Query: 499 --AEETVGE 505
A + V E
Sbjct: 200 RCAADHVAE 208
Score = 31.3 bits (72), Expect = 3.9
Identities = 31/139 (22%), Positives = 74/139 (53%), Gaps = 10/139 (7%)
Query: 973 LRKSSNSS--EEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRK 1030
+RK + +E E+ K++ +E +A+A+ K A + +++I+ K +++ ++R+
Sbjct: 24 VRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIH---KLRNEFE-KELRE 79
Query: 1031 KEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQ 1090
+ E +KL++ L Q+ E ++ + +K +EL+ + E + Q EL+ K+ E+E+
Sbjct: 80 RRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELE----QKQQELEKKEEELEE 135
Query: 1091 LQGKLAALGSETASLSSAD 1109
L + + L++ +
Sbjct: 136 LIEEQLQELERISGLTAEE 154
Score = 30.9 bits (71), Expect = 4.8
Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 30/126 (23%)
Query: 947 DYKKSIDQLMKDRE-DLQQQINLLKEELRKSSNSSE-EMEKLHKQLKQEQLLKAQAVNKL 1004
+ KK + + K+ + +++I+ L+ E K E++KL K+L Q++
Sbjct: 46 EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKE---------- 95
Query: 1005 AEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQ 1064
E ++RK + K+E+E K ++EL Q++++ + ++EL+EL
Sbjct: 96 -ENLDRK-------------LELLEKREEELEKKEKELEQKQQELEKK----EEELEELI 137
Query: 1065 SQVVEE 1070
+ ++E
Sbjct: 138 EEQLQE 143
Score = 30.5 bits (70), Expect = 5.9
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 78 LKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMV 137
L+E+++ A+ KK+A + + + KL+ E E R R+ EL +++
Sbjct: 44 LEEAKKEAEAI---KKEALLEAK---EEIHKLRNEFEKELRERRN--EL-------QKLE 88
Query: 138 VELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELER 195
L L+ + + L++ L+ K + + + +ELE ++ ELER
Sbjct: 89 KRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 33.2 bits (76), Expect = 1.1
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 20/98 (20%)
Query: 118 RLRKQSAELTVAKSAGEQMVVEL----QNILATLEMERDTLQQEVATLQAKISQERSSKT 173
++ + EL + A + EL + A++ L + A L K++ + S
Sbjct: 347 KVDRLDQELVQRQQANDAQTAELRVKTEQAQASVH----QLDSQFAQLDGKLADAQ-SAQ 401
Query: 174 QAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLG 211
QA L+ +L RN + +AE + L
Sbjct: 402 QA----------LEQQYQDLSRN-RDDWMIAEVEQMLS 428
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell surface
and is extremely large (although apparently lacking in
repeat structure) and is important for the process of
invasion of the RBCs by the parasite. These proteins are
found in P. falciparum, P. vivax and P. yoelii.
Length = 2757
Score = 33.1 bits (75), Expect = 1.1
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 961 DLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGK 1020
D IN LKE + KS +E +K K +++ + L Q + E++N K K K
Sbjct: 1480 DHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLN-KYSALAIKNK 1538
Query: 1021 SKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTS 1073
+ D KE + ++ E EK Q + + +KE ++ + + S
Sbjct: 1539 FAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKS 1591
>gnl|CDD|179156 PRK00888, ftsB, cell division protein FtsB; Reviewed.
Length = 105
Score = 30.7 bits (70), Expect = 1.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 380 LQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEE 417
+ ++ Q A LKAR +QL E+ L+ + IEE
Sbjct: 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEE 69
>gnl|CDD|220404 pfam09789, DUF2353, Uncharacterized coiled-coil protein (DUF2353).
Members of this family of uncharacterized proteins have
no known function.
Length = 319
Score = 32.5 bits (74), Expect = 1.2
Identities = 65/298 (21%), Positives = 115/298 (38%), Gaps = 32/298 (10%)
Query: 135 QMVVELQNILATLEMERDTLQQEVATLQAKIS----QERSSKTQAV--NLHKELEGR-LQ 187
+ + L L + ERD + TLQ + ER + A K G Q
Sbjct: 9 EALKILGQDLEKCQNERDQFKLMAETLQMRYRNLKKSERELELVAACQGDMKIKPGTKRQ 68
Query: 188 ALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHL 247
L+ LE+ + QL+ D + L ++ + L+ + +L +R + + E
Sbjct: 69 DLSQLLEKYREENQQLSTDVQELRQRKAELQGDIKLLRQTIAQQRVEFMGGGVRESFEER 128
Query: 248 GEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAK 307
+ VS LEK L+ Q + ++R S + KEE +E +D +
Sbjct: 129 NDLVSQLEK--------LREKCKQLESDLR-------SLLDEKEEVLME-----RDEYQR 168
Query: 308 HRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAEL-RQELEKSKTL 366
L+++ S L G R V +D L+ + L+++IN L+E +EL + L K K +
Sbjct: 169 KAHRLNNELSYLLGGDPRRV---VDVDALVMENRYLKEKINTLEEESELIKMTLAKYKQM 225
Query: 367 QSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKT 424
++ K D T + + +E S + + K + L T
Sbjct: 226 LEAKNKKTMVKAGEGDD-KNSTGVISMKQVKELLASEAIELELPVKAATISDLKSLAT 282
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 32.7 bits (75), Expect = 1.2
Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 33/194 (17%)
Query: 924 MAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKD-REDLQQQINLLKEELRKSSNSSEE 982
K + ESL+++ KE K + +L + E+L++ + +EEL
Sbjct: 151 SIKEDNLKDDLESLIASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELL 210
Query: 983 MEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQEL 1042
K+ E+ L+ + + E+ RKK +E KL+QEL
Sbjct: 211 ARLESKEAALEKQLRLEFEREKEEL---------------------RKKYEE--KLRQEL 247
Query: 1043 TQERE----KFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAAL 1098
++ E K + ELQ ++ ++E K++ E + + +++ +L +L L
Sbjct: 248 ERQAEAHEQKLKNELALQAIELQREFNKEIKE-----KVEEERNGRLAKLAELNSRLKGL 302
Query: 1099 GSETASLSSADVEN 1112
S S A+ EN
Sbjct: 303 EKALDSRSEAEDEN 316
Score = 30.8 bits (70), Expect = 5.3
Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 17/148 (11%)
Query: 350 LKEGAELRQELEKSKTLQSQVEQEQAKKF-------SLQSDLSVQTSEAAHLKAREEQLS 402
L E E E +T V QE F + S A K +QLS
Sbjct: 117 LVEALEELLEELLKETASDPVVQELVSIFNDLIDSIKEDNLKDDLESLIASAKEELDQLS 176
Query: 403 HEVAMLR-----EAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHEL 457
++A L+ E +R ++E+ +L +K E L E ++ +Q + +
Sbjct: 177 KKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQ-----LRLEFERE 231
Query: 458 KEELDERSRNILELEEERGDLTHRLQLA 485
KEEL ++ L E ER H +L
Sbjct: 232 KEELRKKYEEKLRQELERQAEAHEQKLK 259
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 32.5 bits (74), Expect = 1.4
Identities = 42/284 (14%), Positives = 91/284 (32%), Gaps = 38/284 (13%)
Query: 242 EDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEE---TQKSRMVNKEEASVEIV 298
+ ++ + + L+ ++ + E E + +R E VE
Sbjct: 196 DTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQ 255
Query: 299 KELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQ 358
K + E E EV K+ + ++ ++ + + +E A+ Q
Sbjct: 256 PAGKTAEQTREVKIILAE------TEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQ 309
Query: 359 ELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEE 418
E++ +K L+++ + + +++L Q A+ + A A+ +
Sbjct: 310 EVQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQA 369
Query: 419 YHKLKTKRSVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDL 478
++T R E E +Q +A E ++ +E+
Sbjct: 370 EAAVETARETE---EAERAEQAALVA------AAEAAEQEQ---------VEIAVRAEAA 411
Query: 479 THRLQLAVARADSEALARSIAEETVGELEKEKTMKELELKDLMA 522
+ A +EA E +EK E E K +A
Sbjct: 412 KAEAEAQAAEIKAEA-----------EAIREKGKAEAEAKRALA 444
Score = 31.7 bits (72), Expect = 3.1
Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 7/198 (3%)
Query: 30 ERERREMSQLEERQ-RQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNE 88
E E R+ Q E E A ++ Q K L + +R+ + E
Sbjct: 275 EAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETE 334
Query: 89 SETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLE 148
E ++++ E+ K A A + Q+ ++A E E A +
Sbjct: 335 LEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEA--AVETARETEEAERAEQAALVA 392
Query: 149 MERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNR 208
Q++V + + ++ QA + E E + E E + LAE +
Sbjct: 393 AAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKR----ALAEAIQ 448
Query: 209 HLGEKVSSLEKECRLQAL 226
LG+ ++ + +QAL
Sbjct: 449 VLGDAAAAELFKALVQAL 466
Score = 31.0 bits (70), Expect = 4.2
Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 14/241 (5%)
Query: 77 DLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQM 136
+ + A+ + K Q + + E L + AE+ K+ +
Sbjct: 231 EKETEIAIAEANRDAKLVELEVEQQPAGKT--AEQTREVKIILAETEAEVAAWKAETRR- 287
Query: 137 VVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERN 196
E ILA ++ + Q E AK + R + + KE E Q + +
Sbjct: 288 EAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINA- 346
Query: 197 KHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEK 256
+ Q E+ + ++ + R Q A L + E+
Sbjct: 347 --AQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAA-----LVAAAEAAEQ 399
Query: 257 ECASLSLELKAAQAQYQ-QEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSK 315
E +++ +AA+A+ + Q E + R K +A E + L + + +++
Sbjct: 400 EQVEIAVRAEAAKAEAEAQAAEIKAEAEAIR--EKGKAEAEAKRALAEAIQVLGDAAAAE 457
Query: 316 E 316
Sbjct: 458 L 458
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein. The sequences
featured in this family are similar to a region of human
TPR protein and to yeast myosin-like proteins 1 (MLP1)
and 2 (MLP2). These proteins share a number of features;
for example, they all have coiled-coil regions and all
three are associated with nuclear pores. TPR is thought
to be a component of nuclear pore complex- attached
intra-nuclear filaments, and is implicated in nuclear
protein import. Moreover, its N-terminal region is
involved in the activation of oncogenic kinases,
possibly by mediating the dimerisation of kinase domains
or by targeting these kinases to the nuclear pore
complex. MLP1 and MLP2 are involved in the process of
telomere length regulation, where they are thought to
interact with proteins such as Tel1p and modulate their
activity.
Length = 132
Score = 31.1 bits (71), Expect = 1.4
Identities = 24/106 (22%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 249 EKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKH 308
EK+ L+++ + AQ +Y++E+ H E + +++ + ELK +A+
Sbjct: 24 EKIQKLQEDLEEQAEIANEAQQKYERELVKHAEDIEELQALRKQLN-----ELKKEIAQL 78
Query: 309 RSDLSSKESLLSNGK----EREVDYKKSIDQLMKDREDLQQQINLL 350
+++ S ++ LS + E++ + + +L K E+L +Q LL
Sbjct: 79 KAEAESAQAELSEAEESWEEQKKMLEDELSELEKRIEELNEQNKLL 124
>gnl|CDD|224369 COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope
biogenesis, outer membrane].
Length = 784
Score = 32.8 bits (75), Expect = 1.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 1193 TTCEVCPKPIWHI 1205
TTCE C PIW +
Sbjct: 165 TTCEPCDNPIWSV 177
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 32.6 bits (75), Expect = 1.5
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 121 KQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHK 180
AE +A + + L L+ + + L++++A L+ K+ + +SK + N
Sbjct: 228 GDKAEFMLAY-------LNFKEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKK--NKLA 278
Query: 181 ELEGRLQALNTELE 194
ELE +L +L ++
Sbjct: 279 ELEQQLASLEKRID 292
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 32.5 bits (74), Expect = 1.5
Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 12/123 (9%)
Query: 32 ERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNL----TILRHDLKESQRRADN 87
+R+ +S E +R+L E A +A + + + L + R L E R
Sbjct: 405 KRKFVS--EHSERELEEIIARYIAARSAK-FALMKAVEQLRIVEPVARELLPELDARI-- 459
Query: 88 ESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATL 147
+ +A+ ++ S M EK L + + + ++ G L ++ L
Sbjct: 460 ---EELRADGEEKIRSGMGEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMREL 516
Query: 148 EME 150
+++
Sbjct: 517 DLK 519
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 32.8 bits (75), Expect = 1.5
Identities = 53/273 (19%), Positives = 103/273 (37%), Gaps = 43/273 (15%)
Query: 145 ATLEMERDTLQ---QEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHREL 201
A + + Q + ++ + + +EL RL L +LE + +L
Sbjct: 154 AGANEKVKAYRELYQAWLKARQQLKDRQQKE-------QELAQRLDFLQFQLEELEEADL 206
Query: 202 QLAEDNRHLGE--KVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECA 259
Q ED E ++S+LEK L L + + E
Sbjct: 207 QPGEDEALEAEQQRLSNLEKLRELS----------QNALAALRGDVDVQEG--------- 247
Query: 260 SLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSD---LSSKE 316
SL L AQ + ++ N E +EL++ + + D L+ E
Sbjct: 248 SLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIE 307
Query: 317 SLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKS-KTLQSQVEQEQA 375
L+ K + Y S++++++ E ++++++ L + E + LE+ L+ ++++
Sbjct: 308 ERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAV 367
Query: 376 KKFSLQSDLSVQTSEAAH-LKAREEQLSHEVAM 407
LS+ +AA L R EQ +AM
Sbjct: 368 -------ALSLIRRKAAERLAKRVEQELKALAM 393
Score = 32.0 bits (73), Expect = 2.5
Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 20/228 (8%)
Query: 20 QANGELKDLLERERREMSQLEERQRQLSEQYEA--VSARETALRDEMGQLEKNLTILRHD 77
+A +LKD ++E+ +L+ Q QL E EA + AL E +L
Sbjct: 172 KARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEK----- 226
Query: 78 LKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMV 137
L+E + A + + +L + LR+ + ++ A + E+
Sbjct: 227 LRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEAT 286
Query: 138 VELQNILATLEMERDTLQQEVATLQAKISQ-ER---SSKTQAVNLHKELEGRLQALNT-- 191
ELQN L LE + + L E+ A+I + +R +S + + ++++ L L+
Sbjct: 287 RELQNYLDELEFDPERL-NEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSD 345
Query: 192 -ELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERNKHREL 238
LE + +L E+ +S + + L + +EL
Sbjct: 346 ESLEALEEEVDKLEEELDKAAVALSLIR-----RKAAERLAKRVEQEL 388
>gnl|CDD|241453 cd13299, PH2_PH_fungal, Fungal proteins Pleckstrin homology (PH)
domain, repeat 2. The functions of these fungal
proteins are unknown, but they all contain 2 PH domains.
This cd represents the second PH repeat. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 102
Score = 30.3 bits (69), Expect = 1.5
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 887 RHGWKKQYVVVSSKKIIFYNSEND 910
+ WKK ++V+ ++ + FY +++
Sbjct: 20 VNQWKKYWLVLRNRSLSFYKDQSE 43
>gnl|CDD|153361 cd07677, F-BAR_FCHSD2, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH and double SH3
domains 2 (FCHSD2). F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. FCH and double SH3 domains 2 (FCHSD2)
contains an N-terminal F-BAR domain and two SH3 domains
at the C-terminus. It has been characterized only in
silico, and its biological function is still unknown.
F-BAR domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 260
Score = 32.0 bits (72), Expect = 1.5
Identities = 43/184 (23%), Positives = 91/184 (49%), Gaps = 10/184 (5%)
Query: 224 QALNTELERNKHRELQLAEDNRHLGEKVSSLEKECAS-----LSLELKAAQAQYQQEVRA 278
T+L+ E +L ED R +K++++E E A S LK+ + + RA
Sbjct: 4 VEQMTKLQAKHQAECKLLEDEREFSQKIAAIESEYAQKEQKLASQYLKSDWRGMKADERA 63
Query: 279 HEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMK 338
+ + + E ++++ + ++ +++ +S + KE+++ K+ +DQL K
Sbjct: 64 DYRSMYTVWKSFLEGTMQVAQSRINICENYKNLISEPARTVRLYKEQQL--KRCVDQLTK 121
Query: 339 DREDLQQQINLLKEGAELRQELEK-SKTLQSQVEQEQAKKFSL-QSDLSVQTSEAAHLKA 396
+ +LQ+ + L +G + E E+ + ++ + + E K SL QS +S+Q + + LKA
Sbjct: 122 IQAELQETVKDLAKGKKKYFETEQMAHAVREKADIEAKSKLSLFQSRISLQKA-SVKLKA 180
Query: 397 REEQ 400
R +
Sbjct: 181 RRSE 184
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 31.1 bits (71), Expect = 1.6
Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 981 EEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQ 1040
+++EK K+L+ E K + + K + + ++ + S + K++E ++ QQ
Sbjct: 38 KQLEKEFKKLQAELQKKEKELQKEEQKLQKQ--------AATLSEEARKAKQQELQQKQQ 89
Query: 1041 ELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLK 1076
EL Q+++ Q+ELQ+ Q ++++ K+
Sbjct: 90 ELQQKQQAA-------QQELQQKQQELLQPIYDKID 118
Score = 29.9 bits (68), Expect = 4.1
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 1011 KDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEE 1070
K + + K A+++KKEKE +K +Q+L ++ ++ + + QELQ + E
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEAR--KAKQQELQQKQQEL 91
Query: 1071 NTSKLKLQMELDSKDSEIEQ 1090
+ Q EL K E+ Q
Sbjct: 92 QQKQQAAQQELQQKQQELLQ 111
Score = 28.8 bits (65), Expect = 9.9
Identities = 19/83 (22%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 342 DLQQQINLLKEGAELRQELEK-SKTLQSQVEQE----QAKKFSLQSDLSVQTSEAAHLKA 396
D+Q+ ++ G +++LEK K LQ++++++ Q ++ LQ + + EA KA
Sbjct: 22 DVQKVLSESPAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEAR--KA 79
Query: 397 REEQLSHEVAMLREAKRNIEEEY 419
++++L + L++ ++ ++E
Sbjct: 80 KQQELQQKQQELQQKQQAAQQEL 102
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family is
found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 31.1 bits (71), Expect = 1.7
Identities = 27/126 (21%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 922 DLMAKHRSDLSSKESLL--SNGKEREVDYKKSIDQLMKDR-EDLQQQINLLKEELRKSSN 978
L+ + DL +ESL E E++ ++ + +K + EDL++++ LL+ + R+
Sbjct: 40 SLLQQRDRDLEFRESLEETLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEK 99
Query: 979 SSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKL 1038
+ +E+ K K+E V +L + + + +++K+++E KL
Sbjct: 100 KLKTLEQKLKNEKEE-------VQRL---------KNIIQQRKTQYNHELKKRDREIEKL 143
Query: 1039 QQELTQ 1044
++ L Q
Sbjct: 144 KERLLQ 149
Score = 29.2 bits (66), Expect = 8.3
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 318 LLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELE-KSKTLQSQVEQEQAK 376
+G + +++I +++ L QQ E R+ LE + L++++E+ Q
Sbjct: 16 FPRSGDLFDFAVEENIVRIINVIYSLLQQ---RDRDLEFRESLEETLRKLEAEIERLQNT 72
Query: 377 KFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTK 425
L++ L E A L+A+E QL ++ L + +N +EE +LK
Sbjct: 73 IERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEEVQRLKNI 121
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 32.4 bits (74), Expect = 1.8
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 330 KKSIDQLMKDREDLQQQINLLKEG-AELRQELEKSKTLQSQVEQEQAKK----FSLQSDL 384
+++I +L + RE+L Q L+E ++ + L + + Q ++EQ + ++ L+S L
Sbjct: 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSL 228
Query: 385 SVQTSEAAHLKAREEQLSHEVAML-REAKRNIEEE 418
+ + L+A E +L +A REAK E E
Sbjct: 229 QKDQQQLSELRANESRLRDSIARAEREAKARAERE 263
>gnl|CDD|241272 cd01239, PH_PKD, Protein kinase D (PKD/PKCmu) pleckstrin homology
(PH) domain. Protein Kinase C family is composed of
three members, PKD1 (PKCmu), PKD2 and PKD3 (PKCnu). Like
the C-type protein kinases (PKCs), PKDs are activated by
diacylglycerol (DAG). They are involved in vesicular
transport, cell proliferation, survival, migration and
immune responses. PKD consists of tandem C1 domains,
followed by a PH domain and a kinase domain. While the
PKD PH domain has not been shown to bind phosphorylated
inositol lipids and is not required for membrane
translocation, it is required for nuclear export. PH
domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. Less than 10% of PH domains bind
phosphoinositide phosphates (PIPs) with high affinity
and specificity. PH domains are distinguished from other
PIP-binding domains by their specific high-affinity
binding to PIPs with two vicinal phosphate groups:
PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which
results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 127
Score = 30.8 bits (70), Expect = 1.8
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 874 EGW-VSIPNKQNI-KRHGWKKQYVVVSSKKIIFYNSENDK 911
EGW V NK KRH W + +K I + +E
Sbjct: 11 EGWMVHYTNKDPQRKRHYW-----RLDTKCITLFQNETTS 45
>gnl|CDD|153280 cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexins. BAR domains are dimerization, lipid binding and
curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 218
Score = 31.6 bits (72), Expect = 1.9
Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 16/190 (8%)
Query: 29 LERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNE 88
E + + +LEE+ ++LS+Q + + R L +G+ K L L E + +
Sbjct: 6 FEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKC--EEEVGGELG 63
Query: 89 SETKKKAEVNLQVISDMHEKLKTEAET-ATRLRKQSAELTVAKSA----------GEQMV 137
K + ++ S + E L++ K + +
Sbjct: 64 EALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLK 123
Query: 138 VELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELER-- 195
+L + A LE + + A ++ + +++ K E + L EL+R
Sbjct: 124 KDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFH 183
Query: 196 -NKHRELQLA 204
+ R+L+ A
Sbjct: 184 EERARDLKAA 193
Score = 29.2 bits (66), Expect = 9.3
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 332 SIDQLMKDREDLQQQI-NLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSE 390
++ + + DR D + +L K+ A + +LEK L++ + AK L+ +L S
Sbjct: 104 AVKETLDDRADALLTLQSLKKDLASKKAQLEK---LKAAPGIKPAKVEELEEELEEAESA 160
Query: 391 AAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVE 429
+ R E E ++EE + +R+ +
Sbjct: 161 LEEARKRYE----------EISERLKEELKRFHEERARD 189
>gnl|CDD|191114 pfam04859, DUF641, Plant protein of unknown function (DUF641).
Plant protein of unknown function.
Length = 132
Score = 30.4 bits (69), Expect = 2.1
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 810 ELQELQSQV-VEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSS 858
E+QE +S + E K KL+ E+ +KDSEI+ L+ KL L + L
Sbjct: 82 EIQEQRSLLKTYEIMVK-KLEAEVRAKDSEIDSLREKLEELLVANSKLEK 130
Score = 30.4 bits (69), Expect = 2.1
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 1059 ELQELQSQV-VEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSS 1107
E+QE +S + E K KL+ E+ +KDSEI+ L+ KL L + L
Sbjct: 82 EIQEQRSLLKTYEIMVK-KLEAEVRAKDSEIDSLREKLEELLVANSKLEK 130
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 31.8 bits (73), Expect = 2.1
Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 33/246 (13%)
Query: 112 EAETATRLRKQSAELTVAKSAGEQMVVELQNIL-------ATLEMERDTLQQEVATLQAK 164
EA+ +K+SAE + S EQ + EL+ L A L++E D L+ + K
Sbjct: 31 EAKIEELRQKKSAEPSRLYSLYEQEIRELRKQLDELTNERARLQLEIDNLRLAAEDFREK 90
Query: 165 ISQERSSKTQAVN-------------LHK-ELEGRLQALNTELE-RNKHRELQLAEDNRH 209
E + + A N L + +LE ++++L EL K+ E ++ E
Sbjct: 91 YEDELNLRQSAENDIVGLRKDLDEATLARVDLEMKIESLQEELAFLKKNHEEEVRELQSQ 150
Query: 210 LGEKVSSLEKECRLQALNTELERNKHRELQLAEDNRHLGE-----KVSSLEKECASLSLE 264
+ +V+ R L L + + +LAE NR E K+ L++ A
Sbjct: 151 IQGQVNVEMDAARKLDLTKALAEIRAQYEELAEKNRQEAEEWYKSKLEELQQAAARNGDA 210
Query: 265 LKAAQAQYQ------QEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKHRSDLSSKESL 318
L++A+ + Q + ++ K + + E E+ + + +A ++ +S E
Sbjct: 211 LRSAKEEITELRRQIQSLEIELQSLKKQKASLERQLAELEERYELELADYQDTISELEEE 270
Query: 319 LSNGKE 324
L K
Sbjct: 271 LQQLKA 276
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 31.1 bits (71), Expect = 2.2
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 942 KEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQ 999
K R KK +++L + +LQ QI LK+ ++ +E +E+L + K+ + LKA+
Sbjct: 68 KTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAE 125
Score = 30.7 bits (70), Expect = 3.3
Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 1025 SADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSK 1084
S + K + KL++EL + +++ + + Q ++++L+ E +L EL
Sbjct: 61 SQALNKLKTRLEKLKKELEELKQR----IAELQAQIEKLKKGREETEER-TELLEELKQL 115
Query: 1085 DSEIEQLQGKLAALGS 1100
+ E+++L+ +L
Sbjct: 116 EKELKKLKAELEKYEK 131
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 31.9 bits (73), Expect = 2.4
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 26/129 (20%)
Query: 144 LATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQL 203
L L +E DT + TL A++ KEL RL L + N+ L
Sbjct: 47 LKALGIEGDTPADTLRTLVAEV--------------KELRKRLAKL---ISENE----AL 85
Query: 204 AEDNRHLGEKVSSLEK--ECRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECASL 261
+N L ++ S+++ + +Q+ EL K E QL + + L + L++ A +
Sbjct: 86 KAENERLQKREQSIDQQIQQAVQSETQEL--TKEIE-QLKSERQQLQGLIDQLQRRLAGV 142
Query: 262 SLELKAAQA 270
+
Sbjct: 143 LTGPSGGGS 151
>gnl|CDD|241433 cd13279, PH_Cla4_Ste20, Pleckstrin homology (PH) domain. Budding
yeast contain two main p21-activated kinases (PAKs),
Cla4 and Ste20. The yeast Ste20 protein kinase is
involved in pheromone response, though the function of
Ste20 mammalian homologs is unknown. Cla4 is involved in
budding and cytokinesis and interacts with Cdc42, a
GTPase required for polarized cell growth as is Pak.
Cla4 and Ste20 kinases share a function in localizing
cell growth with respect to the septin ring. They both
contain a PH domain, a Cdc42/Rac interactive binding
(CRIB) domain, and a C-terminal Protein Kinase catalytic
(PKc) domain. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 91
Score = 29.5 bits (67), Expect = 2.4
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 874 EGWVSIPNKQN-IKRHGWKKQYVVVSSKKIIFYNSENDKQNTDPELELKDLMAKHRSDL 931
GWVS+ K++ + W K+Y+V+ + + FY +E+ + + LKD+ R+DL
Sbjct: 4 SGWVSV--KEDGLLSFRWSKRYLVLREQSLDFYKNES-SSSASLSIPLKDISNVSRTDL 59
>gnl|CDD|234652 PRK00128, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
Provisional.
Length = 286
Score = 31.7 bits (73), Expect = 2.5
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 618 RHPNIITMLDIYKAVNNKDLYVVFEYMENDLNKV 651
HP+ +++ A+ D + M N L V
Sbjct: 190 SHPDTEKLIE---AIEEGDYQGICANMGNVLENV 220
>gnl|CDD|226396 COG3879, COG3879, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 247
Score = 31.2 bits (71), Expect = 2.6
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 1013 INTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENT 1072
+ G A+ K E R +L +E + QK++ L ++V +
Sbjct: 26 LAMLLAGVMLAAVFQTSKGESVRRARDLDLVKE-------LRSLQKKVNTLAAEVEDLEN 78
Query: 1073 SKLKLQMELDSKDSEIE 1089
++ + + D+ +E
Sbjct: 79 KLDSVRRSVLTDDAALE 95
Score = 30.4 bits (69), Expect = 5.1
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 138 VELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALN 190
++L L +L+ + +TL EV L+ K+ R S LE RL+ L
Sbjct: 53 LDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDA---ALEDRLEKLR 102
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 30.2 bits (69), Expect = 2.7
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 980 SEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQ 1039
+++EK K+ + E + + KL E + + + S A KKEKE +K
Sbjct: 20 QKQLEKEFKKRQAELEKLEKELQKLKEKLQKD--------AATLSEAAREKKEKELQKKV 71
Query: 1040 QELTQEREKFNQVVVKCQKELQELQSQVVEE 1070
QE ++++K Q QK QE +++++
Sbjct: 72 QEFQRKQQKLQQ---DLQKRQQEELQKILDK 99
Score = 29.1 bits (66), Expect = 6.8
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 1004 LAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQEL 1063
L E K + + K A++ K EKE +KL+++L ++ ++ +K+ +EL
Sbjct: 10 LQESPAGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAR--EKKEKEL 67
Query: 1064 QSQVVEENTSKLKLQMELDSKD-SEIEQLQGKL 1095
Q +V E + KLQ +L + E++++ K+
Sbjct: 68 QKKVQEFQRKQQKLQQDLQKRQQEELQKILDKI 100
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 31.5 bits (72), Expect = 2.7
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 248 GEKVSSL-EKECASLSLELKAAQAQYQ--QEVRAHEETQKSRMVNKEEASVEIVKELKDL 304
GEK+ + E + A + +KAA+A ++ R + +++ R++NK L DL
Sbjct: 32 GEKICEVQEGDKADVDKAVKAARAAFKLGSPWRTMDASERGRLLNK----------LADL 81
Query: 305 MAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMK 338
+ + R+ L+S E+ L NGK Y + +K
Sbjct: 82 IERDRAYLASLET-LDNGKPFSKSYLVDLPGAIK 114
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 31.1 bits (71), Expect = 3.1
Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 16/151 (10%)
Query: 952 IDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRK 1011
++ L +D + L +++ LL K + + +E+ +QLKQ L + +
Sbjct: 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ-----------LEDELEDC 201
Query: 1012 DINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEEN 1071
D + K K K K +EL +E ++ + + EL +++ E
Sbjct: 202 DPTELDRAKEKLKKLLQEIMIK--VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259
Query: 1072 TSKLKLQMELDSKDSEIEQLQGKLAALGSET 1102
+ + EIE+L+ +L L S T
Sbjct: 260 KKLEQCR---GFTFKEIEKLKEQLKLLQSLT 287
>gnl|CDD|219934 pfam08614, ATG16, Autophagy protein 16 (ATG16). Autophagy is a
ubiquitous intracellular degradation system for
eukaryotic cells. During autophagy, cytoplasmic
components are enclosed in autophagosomes and delivered
to lysosomes/vacuoles. ATG16 (also known as Apg16) has
been shown to be bind to Apg5 and is required for the
function of the Apg12p-Apg5p conjugate in the yeast
autophagy pathway.
Length = 194
Score = 30.6 bits (69), Expect = 3.5
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 89 SETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLE 148
+E KK Q + ++++L+ +L K AEL ++ E + +L+ L E
Sbjct: 84 TELHKKRGELAQRLLLLNDELEQLRREIQQLEKTIAELRSEITSLETEIRDLREELQEKE 143
Query: 149 MERDTLQQEVATLQAKIS--QERSSKTQAVN 177
+ +TLQ E+ +L +++ +E+ K Q N
Sbjct: 144 KDNETLQDELISLNIELNALEEKLRKLQKEN 174
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 29.9 bits (68), Expect = 3.8
Identities = 21/104 (20%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 952 IDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRK 1011
+DQ++KD E L ++ LKEE+ + EE ++L + L++ ++ + ++ ++
Sbjct: 27 LDQVIKDYEALYKENEELKEEIERLEEKLEEYKELEETLQKTLVVAQETAEEVKANAQKE 86
Query: 1012 DINTTCKGKSKASS------ADVRKKEKECRKLQQELTQEREKF 1049
+ ++KA + +K E +L+++ R +F
Sbjct: 87 AELIIKEAEAKAERIVNDANEEAKKLATEYDELKRQSRLFRTRF 130
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of
this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded and
aggregated proteins [Protein fate, Protein folding and
stabilization].
Length = 852
Score = 31.5 bits (72), Expect = 3.9
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 917 ELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKS 976
+LE++ K D +SKE L KE + +L ++ DL++Q K ++
Sbjct: 416 QLEIEREALKKEKDEASKERLEDLEKE--------LAELEEEYADLEEQWKAEKAAIQGI 467
Query: 977 SNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIM 1008
EE+E++ +L+Q + + + K AE+
Sbjct: 468 QQIKEEIEQVRLELEQAE--REGDLAKAAELQ 497
Score = 31.1 bits (71), Expect = 4.7
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 26 KDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRA 85
K+ LE +E+++LEE L EQ++A E A + Q+++ + +R +L++++R
Sbjct: 433 KERLEDLEKELAELEEEYADLEEQWKA----EKAAIQGIQQIKEEIEQVRLELEQAEREG 488
Query: 86 D 86
D
Sbjct: 489 D 489
>gnl|CDD|240069 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homology domain,
plant-specific sub-family with unknown function. BAH
domains are found in a variety of proteins playing roles
in transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 148
Score = 29.9 bits (67), Expect = 4.1
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 702 GDLGLARSLSDSKECLTEYIATRWYRAPEILISNRR---------YTHHVDIWSLGCIL 751
GDL LAR +E T + A RWY PE R+ T+ + CIL
Sbjct: 51 GDLWLARIEKLWEENGTYWYAARWYTLPEETHMGRQPHNLRRELYLTNDFADIEMECIL 109
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 31.5 bits (71), Expect = 4.3
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query: 930 DLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQ 989
+L L G + +Y + + +L + + I +KE+ + S E+L ++
Sbjct: 2089 ELDCTNVNLVEGVRKYNEYGRGMGELKEQLSN-TVVILGVKEKNADDALSGTPGERLERE 2147
Query: 990 LKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSA 1026
+K + + + L E RK + K KS A
Sbjct: 2148 VKSVFVEAPRDMLFLLEEEVRKRKGSVMKFKSSKKPA 2184
>gnl|CDD|221016 pfam11180, DUF2968, Protein of unknown function (DUF2968). This
family of proteins has no known function.
Length = 192
Score = 30.5 bits (69), Expect = 4.3
Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 2/113 (1%)
Query: 169 RSSKTQAVNLHKELEGRLQALNTELERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNT 228
R KT + + +L + R QL L +++ E R + L
Sbjct: 76 RVIKTADAARAEAIYRDFARQTAQLADVEIRRAQLEAQKAQLERQIA--ASEARAERLQA 133
Query: 229 ELERNKHRELQLAEDNRHLGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEE 281
+L+ + +E Q+A + ++ +LE + + +L+ Q Q +Q E
Sbjct: 134 DLQLAQAQEQQVAARQQQARQEAVALEAQRQAAQAQLRKLQRQIRQLQAQQNE 186
Score = 30.1 bits (68), Expect = 5.4
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 342 DLQQQINLLKEGAELRQELEKSKT-LQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQ 400
D +Q L + R +LE K L+ Q+ +A+ LQ+DL + ++ + AR++Q
Sbjct: 92 DFARQTAQLADVEIRRAQLEAQKAQLERQIAASEARAERLQADLQLAQAQEQQVAARQQQ 151
Query: 401 LSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQ 432
E L ++ + + KL +R + LQ
Sbjct: 152 ARQEAVALEAQRQAAQAQLRKL--QRQIRQLQ 181
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.2 bits (71), Expect = 4.3
Identities = 51/302 (16%), Positives = 104/302 (34%), Gaps = 26/302 (8%)
Query: 823 TSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVENDESYVQDSRLEGWVSIPNK 882
KL EL+ K+ E+E+L+ + D++ E +++ I +
Sbjct: 1102 EKVEKLNAELEKKEKELEKLKNT------TPKDMWLEDLDKFEEALEEQEEVEEKEIAKE 1155
Query: 883 QNIKRHGWKKQYVVVSSKKIIFYNSENDKQNTDPELELKDLMAKHRSDLSSKESL----L 938
Q +K K + +K E K+ + + K + + + S E
Sbjct: 1156 QRLKS---KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDK 1212
Query: 939 SNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQ-LKQEQLLK 997
+ K+ D + + + + LK + SS SSE+ ++ L +E K
Sbjct: 1213 PDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPK 1272
Query: 998 AQAVNKLAEIMNRKDINTTCKGK----SKASSADVRKKEKECRKLQQELTQEREKFNQVV 1053
A + + G+ SK SS +K +K L ++++ +
Sbjct: 1273 NAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTA 1332
Query: 1054 VKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVEND 1113
K + + + Q+ + + + + + SE + SE D E+D
Sbjct: 1333 RKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDD--------DSEVDDSEDEDDEDD 1384
Query: 1114 ES 1115
E
Sbjct: 1385 ED 1386
>gnl|CDD|214801 smart00750, KIND, kinase non-catalytic C-lobe domain. It is an
interaction domain identified as being similar to the
C-terminal protein kinase catalytic fold (C lobe). Its
presence at the N terminus of signalling proteins and
the absence of the active-site residues in the catalytic
and activation loops suggest that it folds independently
and is likely to be non-catalytic. The occurrence of
KIND only in metazoa implies that it has evolved from
the catalytic protein kinase domain into an interaction
domain possibly by keeping the substrate-binding
features.
Length = 176
Score = 30.1 bits (68), Expect = 4.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 728 APEILISNRRYTHHVDIWSLGCILAEMLQSKP 759
APE +I + YT DI+SLG L E L +
Sbjct: 72 APE-VIQGQSYTEKADIYSLGITLYEALDYEL 102
>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 92
Score = 28.9 bits (64), Expect = 4.3
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 873 LEGWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDK 911
EGW+ + WKK++ V+ +++Y S+ D
Sbjct: 1 KEGWLKK--RGGKGLKSWKKRWFVLFDDVLLYYKSKKDS 37
>gnl|CDD|221101 pfam11382, DUF3186, Protein of unknown function (DUF3186). This
bacterial family of proteins has no known function.
Length = 307
Score = 30.8 bits (70), Expect = 4.3
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 142 NILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRL 186
N+L+ LE E L+ E L+A+ + A L RL
Sbjct: 32 NLLSGLEDEFSDLRTENDRLRAEREALNEQASAADQFIAALAPRL 76
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 31.3 bits (71), Expect = 4.4
Identities = 110/622 (17%), Positives = 219/622 (35%), Gaps = 121/622 (19%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSAR---ETALRDEM--------GQLEKNLT 72
+L+ ER + + + L ++Q+ E V+ R ALR + +L+
Sbjct: 291 QLRPHWERIQEQSAALAHTRQQIEE----VNTRLQSTMALRARIRHHAAKQSAELQAQQQ 346
Query: 73 ILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAKSA 132
L L E R +E Q SD E+L+ + T ++ L
Sbjct: 347 SLNTWLAEHDRFRQWNNELAGWRAQFSQQTSD-REQLRQWQQQLTHAEQKLNALPAI--- 402
Query: 133 GEQMVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTE 192
+ + E+ L+Q + L +I ++ Q + + N
Sbjct: 403 TLTLTADEVAAALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAA 462
Query: 193 LERNKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELER------------------NK 234
L + E + L + + E+E R++ L + +
Sbjct: 463 LNE---MRQRYKEKTQQLADVKTICEQEARIKDLEAQRAQLQAGQPCPLCGSTSHPAVEA 519
Query: 235 HRELQLAEDNRH---LGEKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKE 291
++ L+ + L ++V L +E A+L +L A Q Q++ E++ + +E
Sbjct: 520 YQALEPGVNQSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRD-----ESEAQSLRQEE 574
Query: 292 EASVEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLK 351
+A + ++ + + A L ++ + +E ++++ + L R +LQ QI
Sbjct: 575 QA---LTQQWQAVCASLNITLQPQDDIQPWLDAQE-EHERQLRLL-SQRHELQGQIA--- 626
Query: 352 EGAELRQELEKSKTLQSQVEQEQA------KKFSL--------QSDLSVQTSEAAHLKAR 397
A +Q Q Q+EQ Q ++L S L+ + EA + R
Sbjct: 627 --AHNQQI----IQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQEAQSWQQR 680
Query: 398 EEQ---LSHEVAMLR--------EAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETEQYF 446
+ + L + + L EE L R V + Q L QL+T Q
Sbjct: 681 QNELTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHE-QCLSLHSQLQTLQQQ 739
Query: 447 STLYKTQAHE--------------------LKEELDERSRNILELEEERGDLTHRLQLAV 486
L + + L LDE + LE ++ + + +
Sbjct: 740 DVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTL 799
Query: 487 ARADSEALARSIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYK 546
++ALA+ G L+ T+++++ + +E+ G+ R+
Sbjct: 800 VTQTAQALAQHQQHRPDG-LDLTVTVEQIQQ----ELAQLAQQLRENTTRQGEIRQ---- 850
Query: 547 KSIDQLMKDREDLQQQINLLKE 568
QL +D ++ QQQ L+++
Sbjct: 851 ----QLKQDADNRQQQQALMQQ 868
>gnl|CDD|220410 pfam09798, LCD1, DNA damage checkpoint protein. This is a family of
proteins which regulate checkpoint kinases. In
Schizosaccharomyces pombe this protein is called Rad26
and in Saccharomyces cerevisiae it is called LCD1.
Length = 648
Score = 30.9 bits (70), Expect = 4.4
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 931 LSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQL 990
L K +L K+ E + +KS +K++ D Q++ LK+EL+ E E+ L
Sbjct: 2 LRDKLDMLQQQKQEERNKQKSRVNELKEKHD--QELQKLKQELQSL-----EDERKFLVL 54
Query: 991 KQEQLLKA-QAVNKLAEIMNRKDINTT-CKGKSKASSADVRKKEKECRKLQQELTQERE 1047
+Q L K + + +S+ +S +K+E K L R
Sbjct: 55 EQRGLSANDLRTELSPPSNLLKTSDASHIADESQPNSIKQKKREISPVKELVPLNPNRI 113
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 30.8 bits (70), Expect = 4.6
Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 249 EKVSSLEKECASLSLELKAAQAQYQQEVRAHEETQKSRMVNKEEASVEIVKELKDLMAKH 308
EK+ SL + L L + Q+ K R ++KE + +E + + +
Sbjct: 7 EKLESLLERYEELEALLSDPEVISDQD--------KLRKLSKEYSQLEEIVDCYREYQQA 58
Query: 309 RSDLSSKESLLSNG-KEREVDYKKSIDQLMKDREDLQQQINLL 350
+ D+ + +L E K+ +++L + E+L++Q+ +L
Sbjct: 59 QEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQLKVL 101
>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32. Members of
this protein family are the Bud32 protein associated
with Kae1 (kinase-associated endopeptidase 1) in the
Archaea. In many Archaeal genomes, Kae1 and Bud32 are
fused. The complex is homologous to the Kae1 and Bud32
subunits of the eukaryotic KEOPS complex, an apparently
ancient protein kinase-containing molecular machine
[Unknown function, General].
Length = 199
Score = 30.3 bits (69), Expect = 4.7
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 35/155 (22%)
Query: 569 GKGAYGIVYKAYDKNNKQYVAIKK-IFEAFRNKT-D----AQRTYREILFLKSFQRHP-N 621
KGA I+Y K IK+ + +++R+ D +RT E L ++ N
Sbjct: 3 AKGAEAIIYLGDFLGLK--AVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVN 60
Query: 622 IITMLDIYKAVNNKDLYVVFEYME----NDLNKVIRDKILKDVHIRYIMFQLCNG--LSY 675
+ D+ +NK + V EY+E D+ + D++L+++ G +
Sbjct: 61 TPVVYDVD--PDNKTI--VMEYIEGKPLKDVIEEGNDELLREI-----------GRLVGK 105
Query: 676 IHACKVMHRDLKPSNILI--DKSCSIKIGDLGLAR 708
+H ++H DL SNI++ DK I D GL +
Sbjct: 106 LHKAGIVHGDLTTSNIIVRDDKLYLI---DFGLGK 137
>gnl|CDD|218534 pfam05278, PEARLI-4, Arabidopsis phospholipase-like protein (PEARLI
4). This family contains several phospholipase-like
proteins from Arabidopsis thaliana which are homologous
to PEARLI 4.
Length = 234
Score = 30.2 bits (68), Expect = 5.2
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 1000 AVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKE 1059
+ + AE + D T + + DV K++E K + EL +EK V + +++
Sbjct: 139 VLEEFAEAVEYFDQQETAVVEKERHERDVLLKKQEMEKQEAELV-RKEK---EVKEFREK 194
Query: 1060 LQELQSQVVEENTSKLKLQMELDSKDSEIEQLQGK 1094
++E+ ++ E +L+L+ LD S++E+ +GK
Sbjct: 195 VEEMAGRLGELEMKRLRLEKRLDFLGSKVEKFKGK 229
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 31.0 bits (70), Expect = 5.2
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 19/112 (16%)
Query: 1010 RKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKF---NQ---VVVKCQKELQEL 1063
++DI T G S +V + +E K +E ++R+ NQ VV + +K+L+EL
Sbjct: 528 KQDITIT--GASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKEL 585
Query: 1064 QSQV-------VEENTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSA 1108
+V VE +LK + S ++++ +AAL E + +
Sbjct: 586 GDKVPADVKEKVEAKLKELKDAIASGS----TQKMKDAMAALNQEVMQIGQS 633
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 30.4 bits (70), Expect = 5.9
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 295 VEIVKELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGA 354
V EL +L + R + E L + K I Q + ED + L+ E
Sbjct: 24 PLDVDELLELDEERRELQTELEELQAERNAL----SKEIGQAKRKGEDAEA---LIAEVK 76
Query: 355 ELRQELEKSKTLQSQVEQE 373
EL++E++ + ++E E
Sbjct: 77 ELKEEIKALEAELDELEAE 95
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 30.7 bits (70), Expect = 6.1
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 222 RLQALNTELERNKHRELQLAEDNRHLG----EKVSSLEKECASLSLELKAAQAQYQQEVR 277
L+ L + EL E LG E+++ L E A+L EL A +A++QQE
Sbjct: 420 ALEDLRRRIA-ALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKE 478
Query: 278 AHEETQKSRMVNKEEASVE 296
E R + +A
Sbjct: 479 LVEAILALRAELEADADAP 497
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a number
of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and mature
spermatozoa, together with the detection of Gas8 also in
cilia at the apical surfaces of epithelial cells lining
the pulmonary bronchi and Fallopian tubes suggests that
the Gas8 protein may have a role in the functioning of
motile cellular appendages. Gas8 is a microtubule-binding
protein localised to regions of dynein regulation in
mammalian cells.
Length = 201
Score = 29.9 bits (68), Expect = 6.4
Identities = 33/150 (22%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 942 KEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSNSSEEMEKLHKQLKQEQLLKAQAV 1001
KE + KK+ + K ++ Q+ L E L+K + EE+E+L K+LK + K
Sbjct: 33 KEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKK---AEEEVEELRKKLKDYEKDKQS-- 87
Query: 1002 NKLAEIMNRKDINTTCKGKSKASSADVRKKEKECRKLQQELTQEREKFNQVVVKCQKELQ 1061
+ N K + + K + E+ K+++E + +KF + Q++
Sbjct: 88 -----LKNLKARLKELEKELKNLKWESEVLEQRFEKVERERDELYDKFEAAIQDVQQKT- 141
Query: 1062 ELQSQVVEENTSKLKLQMELDSKDSEIEQL 1091
L++ ++E+ L EL+ K++++ ++
Sbjct: 142 GLKNLLLEQKLE--ALNEELEKKEAQLNEV 169
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III
C-methyltransferase; Provisional.
Length = 390
Score = 30.4 bits (69), Expect = 6.9
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 145 ATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELERNKHRELQLA 204
D L ++ LQ ++ ELEG L+ L++ ++ LA
Sbjct: 63 QNQTATNDALANQLTALQKAQESQKQ----------ELEGILKQQAKALDQANRQQAALA 112
Query: 205 EDNRHLGEKVSSL 217
+ L +KV+++
Sbjct: 113 KQLDELQQKVATI 125
Score = 30.1 bits (68), Expect = 8.5
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 344 QQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSH 403
QQ N L +L LQ E ++ L+ L Q ++ L+
Sbjct: 60 QQAQNQTATNDALANQLT---ALQKAQESQKQ---ELEGILKQQAKALDQANRQQAALAK 113
Query: 404 EVAMLRE 410
++ L++
Sbjct: 114 QLDELQQ 120
>gnl|CDD|235551 PRK05667, dnaG, DNA primase; Validated.
Length = 580
Score = 30.6 bits (70), Expect = 7.0
Identities = 41/218 (18%), Positives = 71/218 (32%), Gaps = 22/218 (10%)
Query: 30 ERERREMSQLEERQRQLSEQYEAVSA-RETALRDEMGQLEKNLT-ILRHDLKESQRRADN 87
+++ E R L ++ + LRD + IL E
Sbjct: 371 LIPGKDLDTPEGRAALLERAAPLIAKIPDPTLRDSYRRKLAERLGILDDAQLEQLVPKAQ 430
Query: 88 ESETKKKAEVNL------------QVISDMHEKLKTEAETATRLRKQSAELTVAKSAGEQ 135
E + K + ++ ++ + L E L + L + +
Sbjct: 431 EPQLKAERPRTAERELLALLLQHPELAEEVRDALDEEDFEGLPLFR---AL-LEAILAQP 486
Query: 136 MVVELQNILATLEMERDTLQQEVATLQAKISQERSSKTQAVNLHKELEGRLQALNTELER 195
+ +L L L++ A L++ E S+ L KEL+ L+ L +L
Sbjct: 487 GLTTGSQLLEHLR--DAGLEELAALLESLAVWEEISEEDIAALEKELKDALEKLRDQLLE 544
Query: 196 NKHRELQLAEDNRHLGEKVSSLEKECRLQALNTELERN 233
+ EL E R L S E+ L L EL+R
Sbjct: 545 ERLEELIAKE--RLLEGHGLSSEERLELLQLLIELKRK 580
>gnl|CDD|237582 PRK14011, PRK14011, prefoldin subunit alpha; Provisional.
Length = 144
Score = 29.3 bits (66), Expect = 7.0
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 327 VDYKKSIDQLMKDREDLQQQIN-LLKEGAELRQELEKSKTLQSQVEQEQAKK 377
D+KKS+++L K +++ ++I L KE +LR+ELEK +EQ QA+
Sbjct: 91 EDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKR---AQAIEQRQAQM 139
>gnl|CDD|241470 cd13316, PH_Boi, Boi family Pleckstrin homology domain. Yeast Boi
proteins Boi1 and Boi2 are functionally redundant and
important for cell growth with Boi mutants displaying
defects in bud formation and in the maintenance of cell
polarity.They appear to be linked to Rho-type GTPase,
Cdc42 and Rho3. Boi1 and Boi2 display two-hybrid
interactions with the GTP-bound ("active") form of
Cdc42, while Rho3 can suppress of the lethality caused
by deletion of Boi1 and Boi2. These findings suggest
that Boi1 and Boi2 are targets of Cdc42 that promote
cell growth in a manner that is regulated by Rho3. Boi
proteins contain a N-terminal SH3 domain, followed by a
SAM (sterile alpha motif) domain, a proline-rich region,
which mediates binding to the second SH3 domain of Bem1,
and C-terminal PH domain. The PH domain is essential for
its function in cell growth and is important for
localization to the bud, while the SH3 domain is needed
for localization to the neck. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 95
Score = 28.1 bits (63), Expect = 7.3
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 875 GWVSIPNKQNIKRHGWKKQYVVVSSKKIIFYNSENDKQ 912
GW+ K+ + WK +Y V+ ++ + SEND +
Sbjct: 3 GWMK---KRGERYGTWKTRYFVLKGTRLYYLKSENDSK 37
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 30.4 bits (69), Expect = 7.4
Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 50/188 (26%)
Query: 367 QSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKR 426
QS ++ + SLQ SVQ + K++E H A L E +E +L
Sbjct: 636 QSVEPVDERTRDSLQK--SVQLAIEITTKSQEAAARH-QAELLE-----QEARGRL---- 683
Query: 427 SVEDLQMKELQDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAV 486
+ Q ++ D+ + E+ + L + QA E +SR
Sbjct: 684 ---ERQ--KMHDKAKAEEQRTKLLELQAESAAVESSGQSR-------------------- 718
Query: 487 ARADSEALARSIAEETVGELE-------KEKTMKELELKDLMAKHRSDLSSKESLLSNGK 539
A A +EA AR I E E+E + E EL+ L + +L +++
Sbjct: 719 AEALAEAEARLIEAE--AEVEQAELRAKALRIEAEAELEKLRKRQELELEYEQAQ----N 772
Query: 540 EREVDYKK 547
E E+ K
Sbjct: 773 ELEIAKAK 780
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 30.1 bits (68), Expect = 7.7
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 38 QLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQRRADNESETKKKAEV 97
L++ + LS+ E +S+RE L +++ QL + R L + Q + + S+ +
Sbjct: 238 YLKKLSQDLSKALEKISSREKHLNNQLEQLVQEYREARRTLSQVQEKYNQASQGVSELTR 297
Query: 98 NLQVISDMHEKLKTEAE 114
L IS+ E++K E E
Sbjct: 298 ELNEISEELEQVKQEME 314
>gnl|CDD|222989 PHA03111, PHA03111, Ser/Thr kinase; Provisional.
Length = 444
Score = 30.0 bits (68), Expect = 7.7
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 682 MHRDLKPSNILI-DKSCSIKI 701
+H DLKP NILI D I I
Sbjct: 305 LHVDLKPDNILIFDSDEPISI 325
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 29.8 bits (67), Expect = 7.8
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 319 LSNGK-----EREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKT-------- 365
+S+GK E E+ +S+++L + E+ Q+QI K L + EK +
Sbjct: 1 MSDGKLVSAWEEELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFE 60
Query: 366 -LQSQVEQEQAKKFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAK 412
L++++ +++ K + D+ V+ + + +R H VAML+++K
Sbjct: 61 QLKAELSKKKKKFKKEKVDVRVKVVK-KWINSRLFTAEHYVAMLQQSK 107
>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP). This family consists of
several PV-1 (PLVAP) proteins which seem to be specific
to mammals. PV-1 is a novel protein component of the
endothelial fenestral and stomatal diaphragms. The
function of this family is unknown.
Length = 442
Score = 30.0 bits (67), Expect = 7.8
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 330 KKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQE-QAKKFSLQSDLSVQT 388
+ I+++ ++ DLQ+Q E Q + ++ +++ E+E QA++ LQ++ + QT
Sbjct: 291 RADIERVARENADLQRQ------KLEAEQAAQAAQEAKAKAEKEAQAREAKLQAECARQT 344
Query: 389 S----EAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMK 434
E A L+A + L+ E L KR E+ +L + S D +K
Sbjct: 345 QLALEEKAALRAERDNLAKE---LEAKKREAEQLRMELAIRISALDTCIK 391
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina
virus topoisomerase, Variola virus topoisomerase, Shope
fibroma virus topoisomeras.
Length = 391
Score = 30.0 bits (68), Expect = 8.1
Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Query: 976 SSNSSEEMEKLHKQLKQEQLLKAQAVNKLAEIMNRKDINTTCKGKSKASSADVRKKEKEC 1035
S + MEKL +++K + + + D K K S R E
Sbjct: 272 SKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISD------LKRKLKSKFERDNE--- 322
Query: 1036 RKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQME 1080
KL E+ +++++ K +K+++ L+ ++ KL++Q
Sbjct: 323 -KLDAEVKEKKKEKK-KEEKKKKQIERLEERI-----EKLEVQAT 360
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 29.8 bits (67), Expect = 8.4
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 104 DMHEKLKTEAETATRLRKQSAELTVAKSAGEQMVVELQNILATLEMERDTLQQEVATLQA 163
D +++ ++ E+ L ++ L + L LE E D L E+ LQ
Sbjct: 46 DTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQE 105
Query: 164 ---KISQERSSKTQAVNLHK----ELEGRLQALNTELERNKHRELQLAEDN 207
++ E + NL +LE LQ+L + E + ++ +L + N
Sbjct: 106 EKEQLENEELQYLREYNLFDRNNLQLEDNLQSLELQYEYSLNQLDKLRKTN 156
>gnl|CDD|182730 PRK10787, PRK10787, DNA-binding ATP-dependent protease La;
Provisional.
Length = 784
Score = 30.3 bits (68), Expect = 8.4
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 20 QANGELKDLLERERREMS---------QLEERQRQLSEQYEAVSARETALRDEMGQLEKN 70
Q+ E+ D+ ER M+ Q+E+R R ++ S RE L ++M ++K
Sbjct: 181 QSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKE 240
Query: 71 LTILRHDLKESQRRADNESETKKKAEVNLQVISDMHEKLKTEAETATRLRKQSAELTVAK 130
L A +E+E K+ ++ + EK + E + + SAE TV +
Sbjct: 241 LG--------EMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVR 292
Query: 131 SAGEQMV 137
+ MV
Sbjct: 293 GYIDWMV 299
>gnl|CDD|183876 PRK13169, PRK13169, DNA replication intiation control protein YabA;
Reviewed.
Length = 110
Score = 28.3 bits (64), Expect = 8.5
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 333 IDQLMKDREDLQQQI-NLLKEGAELRQELEKSKTLQSQVEQEQAKK 377
+ L+K+ L++Q+ LL+E LR E +K + ++E E+ K
Sbjct: 17 LGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEAEEPAK 62
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 30.3 bits (69), Expect = 8.6
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 328 DYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQ 387
Y +I+ L++ + +++++ L E + L+ +V++ +A+ LS
Sbjct: 315 KYGVTIEDLLEYLDKIKEELAQLDNSE------ESLEALEKEVKKLKAELLEAAEALSAI 368
Query: 388 TSEAA-HLKAREEQLSHEVAM 407
+AA L+ +AM
Sbjct: 369 RKKAAKELEKEVTAELKALAM 389
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 30.0 bits (67), Expect = 8.6
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 1057 QKELQELQSQVVEE-NTSKLKLQMELDSKDSEIEQLQGKLAALGSETASLSSADVENDES 1115
Q+ +L S E+ + +L+ +L ++ QLQ K + T + D+ D
Sbjct: 283 QQSFDQLVSPRKEQKREERRQLKQQLRDMQKQLRQLQQKYVQIYDSTDDSTDDDIHEDIG 342
Query: 1116 YVQDEVRSRSVT 1127
+ ++ SRS +
Sbjct: 343 NLSEDSPSRSNS 354
>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 365
Score = 29.8 bits (67), Expect = 8.7
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 24 ELKDLLERERREMSQLEERQRQLSEQYEAVSARETALRDEMGQLEKNLTILRHDLKESQR 83
L + LER E+ +LEER R + +++V TA+ + L + D +++Q
Sbjct: 153 LLAERLERALIELEELEERNRIARDLHDSVGQSLTAISMLLALLLL---LADEDAEKAQE 209
Query: 84 RADNESETKKKA--EVNLQVISDMHEKLKTEAETATRLRKQSAELTVA 129
+ ++A EV ++ D+ LR A+
Sbjct: 210 ELKEIEKLLREALQEVR-ALVRDLRPVELEGLGLVEALRALLADFEER 256
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 29.6 bits (67), Expect = 8.9
Identities = 41/215 (19%), Positives = 95/215 (44%), Gaps = 9/215 (4%)
Query: 919 ELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEELRKSSN 978
EL++ + R + + KE+ + + +L K+ +L+++ N R +
Sbjct: 52 ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKS 111
Query: 979 SSEEMEKLHKQLKQEQLLKA------QAVNKLAEIMNRKDINTTCKGKSKASSADVRKKE 1032
E+E+L K+ + L Q + +L + + K K A++ + +
Sbjct: 112 LEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELK 171
Query: 1033 KECRKLQ---QELTQEREKFNQVVVKCQKELQELQSQVVEENTSKLKLQMELDSKDSEIE 1089
K+ R++ QEL E +++++ ++K +E EL+ + E + ++L ++D E
Sbjct: 172 KKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFR 231
Query: 1090 QLQGKLAALGSETASLSSADVENDESYVQDEVRSR 1124
LQ +L L + +L + + ++E++ R
Sbjct: 232 NLQNELRELEKKIKALRAKEKAAKRREKREELKER 266
>gnl|CDD|233459 TIGR01541, tape_meas_lam_C, phage tail tape measure protein, lambda
family. This model represents a relatively
well-conserved region near the C-terminus of the tape
measure protein of a lambda and related phage. This
protein, which controls phage tail length, is typically
about 1000 residues in length. Both low-complexity
sequence and insertion/deletion events appear common in
this family. Mutational studies suggest a ruler or
template role in the determination of phage tail length.
Similar behavior is attributed to proteins from
distantly related or unrelated families in other phage
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 332
Score = 29.8 bits (67), Expect = 9.1
Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 18/133 (13%)
Query: 343 LQQQINLL----------KEGAELRQELEKSKTLQSQVEQEQAKKFSLQSDLSVQTSEAA 392
L QQI K E+ L+ +E+ + K L+ T
Sbjct: 6 LTQQIADRKLKKLNTADEKSLQSRSDEIIALIKLEKLLEEAERKALEALKKLAEAT---- 61
Query: 393 HLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETE-QYFSTLYK 451
+ Q ++ + E +L+ R+ Q ++L + + S LYK
Sbjct: 62 --ASIRAQNKRQLDRFGLGDKQRERLDARLQIDRTFRK-QQRDLNKAMTAKGLAGSDLYK 118
Query: 452 TQAHELKEELDER 464
Q +K L+E
Sbjct: 119 EQLAAIKAALNEA 131
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to be
found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 29.5 bits (67), Expect = 9.2
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 1029 RKKEKECRKLQQELTQEREKFNQVVVKCQKELQELQSQVVEENTSKL 1075
+ E+E KL+++ + E+ + +++ EL+ELQS E+ S L
Sbjct: 10 KLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQST--PEDLSCL 54
>gnl|CDD|218651 pfam05600, DUF773, Protein of unknown function (DUF773). This
family contains several eukaryotic sequences which are
thought to be CDK5 activator-binding proteins, however,
the function of this family is unknown.
Length = 506
Score = 30.0 bits (68), Expect = 9.3
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 330 KKSIDQLMKDREDL-QQQINLLKEGAELRQEL----EKSKTLQSQVEQEQAKKFS 379
K D+L + RE + +++ +E + L +L EK++ LQ +E + +K+++
Sbjct: 444 LKQEDKLKEKRELMTEKRQEAREEQSSLEPKLDLLIEKTRELQKLIEADISKRYN 498
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 30.1 bits (69), Expect = 9.4
Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 59/193 (30%)
Query: 330 KKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAK------KFSLQSD 383
KK +++L+ E+L+++I E E E+ ++ + ++++ + + + +
Sbjct: 90 KKDMEELV---EELKKEIPAAFESEEYEARKEE---IEEEFQEKREEAFEELEEEAKEKG 143
Query: 384 LSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKELQDQLETE 443
++ + A L++ + EEE+ L +E +++LE
Sbjct: 144 FALVRTPG----------GFVFAPLKDGEPLTEEEFEALP----------EEEREELEE- 182
Query: 444 QYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALARSIAEETV 503
+ EL+EEL E R + ELE E AR L R +A V
Sbjct: 183 ---------KIDELEEELQEILRQLRELERE------------AREKLRELDREVALFAV 221
Query: 504 GELEKEKTMKELE 516
G L + EL+
Sbjct: 222 GPL-----LDELK 229
>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family. This family includes PspA
a protein that suppresses sigma54-dependent
transcription. The PspA protein, a negative regulator of
the Escherichia coli phage shock psp operon, is produced
when virulence factors are exported through secretins in
many Gram-negative pathogenic bacteria and its homologue
in plants, VIPP1, plays a critical role in thylakoid
biogenesis, essential for photosynthesis. Activation of
transcription by the enhancer-dependent bacterial
sigma(54) containing RNA polymerase occurs through ATP
hydrolysis-driven protein conformational changes enabled
by activator proteins that belong to the large AAA(+)
mechanochemical protein family. It has been shown that
PspA directly and specifically acts upon and binds to
the AAA(+) domain of the PspF transcription activator.
Length = 220
Score = 29.3 bits (66), Expect = 9.6
Identities = 40/255 (15%), Positives = 87/255 (34%), Gaps = 47/255 (18%)
Query: 317 SLLSNGKEREVDYKKSIDQLMKDREDLQQQINLLKEGAELRQELEKSKTLQSQVEQEQAK 376
+ + G ++ D +K ++Q ++D + E + RQ L + Q Q+E++ +
Sbjct: 12 ANIHEGLDKAEDPEKMLEQAIRDMQS---------ELGKARQALAQVIARQKQLERKLEE 62
Query: 377 KFSLQSDLSVQTSEAAHLKAREEQLSHEVAMLREAKRNIEEEYHKLKTKRSVEDLQMKEL 436
+ L + A L E+L+ E ++ L
Sbjct: 63 QKEQAKKLENKARAA--LTKGNEELAREALA------------------------EIATL 96
Query: 437 QDQLETEQYFSTLYKTQAHELKEELDERSRNILELEEERGDLTHRLQLAVARADSEALAR 496
+ Q E + T ++ +L+++L I +L+ ++ L RL+ A A+
Sbjct: 97 EKQAEALETQLTQQRSAVEQLRKQLAALETKIQQLKAKKTALKARLKAAKAQEAVNTSLG 156
Query: 497 SIAEETVGELEKEKTMKELELKDLMAKHRSDLSSKESLLSNGKEREVDYKKSIDQLMKDR 556
S + E+ + + K E + + D ++
Sbjct: 157 SASTESATDSFERIEEKIEEREARAD------------AAAELASAQDLDAKLEAAGIQM 204
Query: 557 EDLQQQINLLKEGKG 571
E + + LK +G
Sbjct: 205 EVSEDVLARLKAEQG 219
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.127 0.337
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 59,401,438
Number of extensions: 6000877
Number of successful extensions: 14836
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11111
Number of HSP's successfully gapped: 2122
Length of query: 1219
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1111
Effective length of database: 6,147,370
Effective search space: 6829728070
Effective search space used: 6829728070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (28.8 bits)