BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14432
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B5XAM2|ICT1_SALSA Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Salmo salar GN=ict1
PE=2 SV=1
Length = 191
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
Query: 85 EELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLI 144
+ L ++YSRSSGPGGQHVN VSTK ++RF V A+W+ EDV++++I NKNR+NK G L+
Sbjct: 60 DRLTVSYSRSSGPGGQHVNKVSTKAEVRFHVYTADWIPEDVRQKIILNNKNRINKAGELL 119
Query: 145 IKSDRTRSQQLNLADAMTTLRNMIWKAA-KPAPQISED 181
+ S+++RSQQ N+ D + + ++I KA KP +ED
Sbjct: 120 VTSEQSRSQQRNMGDCIQKISDIIAKATEKPHEPSAED 157
>sp|Q3T116|ICT1_BOVIN Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Bos taurus GN=ICT1
PE=2 SV=1
Length = 206
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 100/177 (56%), Gaps = 29/177 (16%)
Query: 14 QRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVI 73
R V ++S+ SLDKLYP S G +P A G N I
Sbjct: 31 HRQVEGTEFRSAYSLDKLYPESR---------------GADTAWRVPGDAKQG---NDDI 72
Query: 74 PVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELN 133
PV + L I+Y RSSGPGGQ+VN V++K ++RF + +A+W+ E V++++ +
Sbjct: 73 PV---------DRLTISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKMALTH 123
Query: 134 KNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQISED--TIDRIRI 188
KN++N+ G LI+ S+ +R Q NLAD + +R+MI +A++PA + S++ + ++RI
Sbjct: 124 KNKINRAGELILTSEYSRYQFRNLADCLQKIRDMIAEASQPATEPSKEDAALQKLRI 180
>sp|D2HD32|ICT1_AILME Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Ailuropoda
melanoleuca GN=ICT1 PE=3 SV=1
Length = 206
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 29/169 (17%)
Query: 22 YKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFS 81
++S SLDKLYP S + K PD D + N IP+
Sbjct: 39 FQSIYSLDKLYPESR-----GSDTAWKVPD-------------DAQQTNKDIPL------ 74
Query: 82 YITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDG 141
+ L I+Y RSSGPGGQ+VN V++K ++RF + A W+ E V++++ ++KN++N+ G
Sbjct: 75 ---DRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKMAIMHKNKINRSG 131
Query: 142 YLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKP--APQISEDTIDRIRI 188
LI+ S+ +R Q NLAD + +R+MI +A++ P + + RIRI
Sbjct: 132 ELILTSECSRYQFRNLADCLQKIRDMIAEASQTPKEPSKEDAALHRIRI 180
>sp|Q8R035|ICT1_MOUSE Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Mus musculus GN=Ict1
PE=1 SV=1
Length = 206
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 29/177 (16%)
Query: 14 QRNVVKRFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVI 73
R V ++S SLDKLYP S G +P A + I
Sbjct: 31 HRQVDGTTFQSIYSLDKLYPES---------------KGADTAWKVPEHAKQASSY---I 72
Query: 74 PVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELN 133
P+ + L I+Y RSSGPGGQ+VN V++K ++RF + +A+W+ E V++++ +
Sbjct: 73 PL---------DRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTH 123
Query: 134 KNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK-PAPQISEDT-IDRIRI 188
KN++NK G L++ S+ +R Q NLA+ + +R+MI +A++ P ED + R+RI
Sbjct: 124 KNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEASQVPKEPSKEDARLQRLRI 180
>sp|Q14197|ICT1_HUMAN Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Homo sapiens GN=ICT1
PE=1 SV=1
Length = 206
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 94/169 (55%), Gaps = 29/169 (17%)
Query: 22 YKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPRFS 81
+KS SLDKLYP S + + P+G K + + IP+
Sbjct: 39 FKSIYSLDKLYPESQG-----SDTAWRVPNGAK-------------QADSDIPL------ 74
Query: 82 YITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDG 141
+ L I+Y RSSGPGGQ+VN V++K ++RF + A W+ E V++++ +KN++N+ G
Sbjct: 75 ---DRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIAITHKNKINRLG 131
Query: 142 YLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK-PAPQISEDT-IDRIRI 188
LI+ S+ +R Q NLAD + +R+MI +A++ P ED + RIRI
Sbjct: 132 ELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRI 180
>sp|P45388|ARFB_PSEPU Peptidyl-tRNA hydrolase OS=Pseudomonas putida PE=3 SV=1
Length = 137
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLII 145
E+++TY R+ G GGQ+VN VS+ V +RF + A++ L E K++L+ L +R+ DG LII
Sbjct: 14 EIELTYIRAQGAGGQNVNKVSSAVHLRFDIPASS-LPEFYKERLLALRDSRITGDGVLII 72
Query: 146 KSDRTRSQQLNLADAMTTLRNMIWKAAK 173
K+ + R+Q N ADA+ L +I A K
Sbjct: 73 KAQQYRTQDQNRADALARLAELIIAAGK 100
>sp|P40711|ARFB_ECOLI Peptidyl-tRNA hydrolase YaeJ OS=Escherichia coli (strain K12)
GN=yaeJ PE=1 SV=2
Length = 140
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 75 VVIPRFSYITE-ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELN 133
+VI R I + EL+IT R+ G GGQHVN ST + +RF + A++ L E K++L+ +
Sbjct: 2 IVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASS-LPEYYKERLLAAS 60
Query: 134 KNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMI 168
+ ++ DG ++IK+ RSQ+LN A+ L MI
Sbjct: 61 HHLISSDGVIVIKAQEYRSQELNREAALARLVAMI 95
>sp|Q9HDZ3|MUG82_SCHPO Meiotically up-regulated gene 82 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug82 PE=1 SV=1
Length = 182
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 16/114 (14%)
Query: 85 EELDITYSRSSGPGGQHVNSVSTK--VDIRFKVNAANWLNEDVKKQLI------ELNKNR 136
+++ I++SRSSGPGGQ+VN ++TK V++ FK L + LI E+ +N
Sbjct: 47 DQVQISFSRSSGPGGQNVNKLNTKVIVNLPFK-----QLESCIPMFLINHFKTCEMLRNY 101
Query: 137 LNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKP--APQISEDTIDRIRI 188
++G + I S +TRSQ N+ DA+ + +++ K+A+ P + I RI I
Sbjct: 102 RIQNG-IKIYSQKTRSQHKNIEDALNKISDLLNKSAETLYVPDTPPEKIARISI 154
>sp|Q12322|YO114_YEAST Putative uncharacterized protein YOL114C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YOL114C PE=4
SV=1
Length = 202
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 89 ITYSRSSGPGGQHVNSVSTKVDIRFK-VNAANWLNEDVKKQLIELNKNRLNKDG--YLII 145
+ Y R+SGPGGQ+VN V++K + ++ W+ ++V + ++ + R G ++I
Sbjct: 71 LRYDRASGPGGQNVNKVNSKCTLTLSGLSNCAWIPQEV-RNILSSGRFRYYAKGSDSIVI 129
Query: 146 KSDRTRSQQLNLADAMTTL 164
+SD TRS++ N L
Sbjct: 130 QSDETRSRETNKLKCFEKL 148
>sp|Q0ID34|RF1_SYNS3 Peptide chain release factor 1 OS=Synechococcus sp. (strain CC9311)
GN=prfA PE=3 SV=1
Length = 364
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
+LDI+ +RS G GGQ+VN V T VD+ K
Sbjct: 225 DLDISTARSGGAGGQNVNKVETAVDLMHK 253
>sp|Q7V518|RF1_PROMM Peptide chain release factor 1 OS=Prochlorococcus marinus (strain
MIT 9313) GN=prfA PE=3 SV=1
Length = 365
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
EL+I+ +RS G GGQ+VN V T VD+ K
Sbjct: 225 ELEISTARSGGAGGQNVNKVETAVDLLHK 253
>sp|Q3AMQ9|RF1_SYNSC Peptide chain release factor 1 OS=Synechococcus sp. (strain CC9605)
GN=prfA PE=3 SV=1
Length = 365
Score = 37.0 bits (84), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
+LDI+ +RS G GGQ+VN V T VD+ K
Sbjct: 225 DLDISTARSGGAGGQNVNKVETAVDLLHK 253
>sp|A5GVY9|RF1_SYNR3 Peptide chain release factor 1 OS=Synechococcus sp. (strain RCC307)
GN=prfA PE=3 SV=1
Length = 364
Score = 37.0 bits (84), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
+LDI+ +RS G GGQ+VN V T VD+ K
Sbjct: 225 DLDISTARSGGAGGQNVNKVETAVDLLHK 253
>sp|Q3AW64|RF1_SYNS9 Peptide chain release factor 1 OS=Synechococcus sp. (strain CC9902)
GN=prfA PE=3 SV=1
Length = 365
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 46 QVKAPDGLKFNGVIPVKAPDGLKFNGVIPV-VIPRFSYITEELD-----ITYSRSSGPGG 99
Q+K G+ +P G V V+P + ELD I+ +RS G GG
Sbjct: 179 QLKFEAGVHRVQRVPATESQGRVHTSTATVAVMPEADAVEVELDPKDLEISTARSGGAGG 238
Query: 100 QHVNSVSTKVDIRFK 114
Q+VN V T VD+ K
Sbjct: 239 QNVNKVETAVDLLHK 253
>sp|B7K205|RF1_CYAP8 Peptide chain release factor 1 OS=Cyanothece sp. (strain PCC 8801)
GN=prfA PE=3 SV=1
Length = 370
Score = 36.6 bits (83), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
+++IT +RS G GGQ+VN V T VD+ +K
Sbjct: 225 DIEITTARSGGAGGQNVNKVETAVDLFYK 253
>sp|Q8DMG9|RF1_THEEB Peptide chain release factor 1 OS=Thermosynechococcus elongatus
(strain BP-1) GN=prfA PE=3 SV=1
Length = 364
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 19/100 (19%)
Query: 75 VVIPRFSYITEELD-----ITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQL 129
V+P + E+D +T +RS G GGQ+VN V T VD+ K + + QL
Sbjct: 209 AVMPEVDEVEVEIDPKDIELTTARSGGAGGQNVNKVETAVDLYHKPTGIRIFCTEERSQL 268
Query: 130 IELNKNRLNKDGYLIIKSD----RTRSQQLNLADAMTTLR 165
NK R + I+++ + R QQ +A+T++R
Sbjct: 269 --KNKER----AFQILRAKLYEIKLREQQ----EAITSMR 298
>sp|Q9QYP2|CELR2_RAT Cadherin EGF LAG seven-pass G-type receptor 2 (Fragment) OS=Rattus
norvegicus GN=Celsr2 PE=2 SV=1
Length = 2144
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 14 QRNVVKRFYKSSISLDKLYP-NSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGV 72
+R + R ++IS ++ P + ++ L+ P + ++ L+F+ P A + F +
Sbjct: 432 ERLYLNRSLLTAISAQRVLPFDDNICLREPCENYMRCVSVLRFDSSAPFIASSSVLFRPI 491
Query: 73 IPV------VIPRFS--YITEELDITYSRSSGPGGQ 100
PV P F+ Y E+D+ YSR GP G
Sbjct: 492 HPVGGLRCRCPPGFTGDYCETEVDLCYSRPCGPHGH 527
>sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens
GN=CELSR2 PE=1 SV=1
Length = 2923
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 14 QRNVVKRFYKSSISLDKLYP-NSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGV 72
+R + R ++IS ++ P + ++ L+ P + ++ L+F+ P A + F +
Sbjct: 1207 ERLYLNRSLLTAISAQRVLPFDDNICLREPCENYMRCVSVLRFDSSAPFIASSSVLFRPI 1266
Query: 73 IPV------VIPRFS--YITEELDITYSRSSGPGGQ 100
PV P F+ Y E+D+ YSR GP G+
Sbjct: 1267 HPVGGLRCRCPPGFTGDYCETEVDLCYSRPCGPHGR 1302
>sp|Q7V9Z0|RF1_PROMA Peptide chain release factor 1 OS=Prochlorococcus marinus (strain
SARG / CCMP1375 / SS120) GN=prfA PE=3 SV=1
Length = 365
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
+L+I+ +RS G GGQ+VN V T VD+ K
Sbjct: 225 DLEISTARSGGAGGQNVNKVETAVDLLHK 253
>sp|Q7U4H2|RF1_SYNPX Peptide chain release factor 1 OS=Synechococcus sp. (strain WH8102)
GN=prfA PE=3 SV=1
Length = 365
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
+L+I+ +RS G GGQ+VN V T VD+ K
Sbjct: 225 DLEISTARSGGAGGQNVNKVETAVDLLHK 253
>sp|B1XJH8|RF1_SYNP2 Peptide chain release factor 1 OS=Synechococcus sp. (strain ATCC
27264 / PCC 7002 / PR-6) GN=prfA PE=3 SV=1
Length = 363
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 59 IPVKAPDGLKFNGVIPV-VIPRFSYITEELD-----ITYSRSSGPGGQHVNSVSTKVDIR 112
+PV G + V+P + E+D +T +RS G GGQ+VN V T VD+
Sbjct: 192 VPVTEAGGRVHTSTATIAVMPEVDDVEVEIDPKDIEMTTARSGGAGGQNVNKVETAVDLF 251
Query: 113 FK 114
K
Sbjct: 252 HK 253
>sp|A9BCL8|RF1_PROM4 Peptide chain release factor 1 OS=Prochlorococcus marinus (strain
MIT 9211) GN=prfA PE=3 SV=1
Length = 365
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
+L+I+ +RS G GGQ+VN V T VD+ K
Sbjct: 225 DLEISTARSGGAGGQNVNKVETAVDLLHK 253
>sp|Q5AU81|AFCA_EMENI Alpha-fucosidase A OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=afcA PE=2 SV=1
Length = 809
Score = 35.0 bits (79), Expect = 0.30, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 20 RFYKSSISLDKLYPNSSMLLKTPTPDQVKAPDGLKFNGVIPVKAPDGLKFNGVIPVVIPR 79
R K +IS++ L N S+L + + +A L+ +GV P+G+K+ V VV PR
Sbjct: 191 RLPKVTISIENLLVNQSLLQTSCESEAKRAV--LRHSGVTQAGPPEGMKYAAVAEVVNPR 248
Query: 80 FSYIT 84
S T
Sbjct: 249 SSVTT 253
>sp|Q0VS77|RF1_ALCBS Peptide chain release factor 1 OS=Alcanivorax borkumensis (strain
SK2 / ATCC 700651 / DSM 11573) GN=prfA PE=3 SV=1
Length = 361
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 36/115 (31%)
Query: 84 TEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYL 143
TE+L I RSSG GGQHVN+ + V I +
Sbjct: 221 TEDLRIDTYRSSGAGGQHVNTTDSAVRITHLPTG-------------------------V 255
Query: 144 IIKSDRTRSQQLNLADAMTTLRNMIWKA---AKPAPQISE--------DTIDRIR 187
+++ RSQ N A AM+ L ++ A A A Q +E D +RIR
Sbjct: 256 VVECQDERSQHKNKARAMSLLSAKLYDAQQNAAHAEQAAERKSLVGSGDRSERIR 310
>sp|Q3MF91|RF1_ANAVT Peptide chain release factor 1 OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=prfA PE=3 SV=1
Length = 366
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNR 136
++++T +RS G GGQ+VN V T VD+ K + + QL NK R
Sbjct: 225 DIEMTTARSGGAGGQNVNKVETAVDLMHKPTGIRIFCTEERSQL--QNKER 273
>sp|Q8YPK9|RF1_NOSS1 Peptide chain release factor 1 OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=prfA PE=3 SV=1
Length = 366
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNR 136
++++T +RS G GGQ+VN V T VD+ K + + QL NK R
Sbjct: 225 DIEMTTARSGGAGGQNVNKVETAVDLMHKPTGIRIFCTEERSQL--QNKER 273
>sp|A7I0P7|RF2_CAMHC Peptide chain release factor 2 OS=Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=prfB
PE=3 SV=1
Length = 364
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 25/92 (27%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLII 145
+L I Y RSSG GGQHVN + V I I N +++
Sbjct: 237 DLRIDYYRSSGAGGQHVNKTESAVRITH----------------IPTN---------IVV 271
Query: 146 KSDRTRSQQLNLADAMTTLRNMIWKAAKPAPQ 177
+ R Q N A AM L++ +++ K Q
Sbjct: 272 QCQNDRDQHKNKASAMKVLKSRLYELEKLKKQ 303
>sp|A5GIR6|RF1_SYNPW Peptide chain release factor 1 OS=Synechococcus sp. (strain WH7803)
GN=prfA PE=3 SV=1
Length = 365
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDI 111
+L+I+ +RS G GGQ+VN V T VD+
Sbjct: 225 DLEISTARSGGAGGQNVNKVETAVDL 250
>sp|Q46WS9|RF1_CUPPJ Peptide chain release factor 1 OS=Cupriavidus pinatubonensis
(strain JMP134 / LMG 1197) GN=prfA PE=3 SV=1
Length = 360
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 24/107 (22%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNR---LNKDGY 142
+L I R+SG GGQHVN K ++A L ++E +R NKD
Sbjct: 221 DLRIDTFRASGAGGQHVN----------KTDSAVRLTHLPTGIVVECQDDRSQHRNKDKA 270
Query: 143 LIIKSDRTRSQQLNLADA--MTTLRNMIWKAAKPAPQISEDTIDRIR 187
+ + + R + QQ+ A A +T RN+I S D DRIR
Sbjct: 271 MKVLAARIKDQQMRAAQAKEASTRRNLIG---------SGDRSDRIR 308
>sp|B2ITM5|RF1_NOSP7 Peptide chain release factor 1 OS=Nostoc punctiforme (strain ATCC
29133 / PCC 73102) GN=prfA PE=3 SV=1
Length = 365
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNR 136
++++T +RS G GGQ+VN V T VD+ K + + QL NK R
Sbjct: 225 DIEMTTARSGGAGGQNVNKVETAVDLMHKPTGIRIFCTEERSQL--QNKER 273
>sp|Q46IT8|RF1_PROMT Peptide chain release factor 1 OS=Prochlorococcus marinus (strain
NATL2A) GN=prfA PE=3 SV=1
Length = 365
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
+L+I+ +RS G GGQ+VN V T +D+ K
Sbjct: 225 DLEISTARSGGAGGQNVNKVETAIDLFHK 253
>sp|A2C4X1|RF1_PROM1 Peptide chain release factor 1 OS=Prochlorococcus marinus (strain
NATL1A) GN=prfA PE=3 SV=1
Length = 365
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
+L+I+ +RS G GGQ+VN V T +D+ K
Sbjct: 225 DLEISTARSGGAGGQNVNKVETAIDLFHK 253
>sp|B8HXV0|RF1_CYAP4 Peptide chain release factor 1 OS=Cyanothece sp. (strain PCC 7425 /
ATCC 29141) GN=prfA PE=3 SV=1
Length = 364
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNR 136
++++T +RS G GGQ+VN V T VD+ K + + QL NK R
Sbjct: 225 DIELTTARSGGAGGQNVNKVETAVDLFHKPTGIRIFCTEERSQL--QNKER 273
>sp|C0QTI3|RF1_PERMH Peptide chain release factor 1 OS=Persephonella marina (strain DSM
14350 / EX-H1) GN=prfA PE=3 SV=1
Length = 361
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 85 EELDITYSRSSGPGGQHVNSVSTKVDI 111
EEL I R+SG GGQHVN+ + V I
Sbjct: 222 EELKIETMRASGAGGQHVNTTDSAVRI 248
>sp|Q5N0T6|RF1_SYNP6 Peptide chain release factor 1 OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=prfA PE=3 SV=1
Length = 368
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
++++T +RS G GGQ+VN V T VD+ K
Sbjct: 225 DIELTTARSGGAGGQNVNKVETAVDLFHK 253
>sp|Q31L36|RF1_SYNE7 Peptide chain release factor 1 OS=Synechococcus elongatus (strain
PCC 7942) GN=prfA PE=3 SV=1
Length = 368
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
++++T +RS G GGQ+VN V T VD+ K
Sbjct: 225 DIELTTARSGGAGGQNVNKVETAVDLFHK 253
>sp|A1SHH9|RF1_NOCSJ Peptide chain release factor 1 OS=Nocardioides sp. (strain BAA-499
/ JS614) GN=prfA PE=3 SV=1
Length = 357
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 43 TPDQVKAPDGL-KFNGVI------PVKAPDGLKFNGVIPV-VIPRFSYITEELD-----I 89
TP+ +AP L KF G + PV G V V+P + ++D I
Sbjct: 164 TPEPGEAPYALLKFEGGVHRVQRVPVTESQGRVHTSAAGVLVLPEAEQVDVQIDENDLRI 223
Query: 90 TYSRSSGPGGQHVNSVSTKVDI 111
RSSGPGGQ VN+ + V I
Sbjct: 224 DVFRSSGPGGQSVNTTDSAVRI 245
>sp|Q04BB3|RF1_LACDB Peptide chain release factor 1 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=prfA PE=3 SV=1
Length = 361
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 31/117 (26%)
Query: 59 IPVKAPDGLKFNGVIPV-VIPRFSYITEELD-----ITYSRSSGPGGQHVNSVSTKVDIR 112
IPV G V V+P + + +LD + RSSG GGQH+N S+ V
Sbjct: 189 IPVTESAGRVHTSTATVAVMPEYEQVDIDLDPKEIRVDVYRSSGAGGQHINKTSSAV--- 245
Query: 113 FKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIW 169
++ L G ++ D+ RSQQ N A AM L++ ++
Sbjct: 246 ---------------RMTHLPT------GIVVAMQDQ-RSQQQNRAKAMEILKSRVY 280
>sp|Q110D7|RF1_TRIEI Peptide chain release factor 1 OS=Trichodesmium erythraeum (strain
IMS101) GN=prfA PE=3 SV=1
Length = 369
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 53 LKFN-GV-----IPVKAPDGLKFNGVIPVVI-PRFSYITEELD-----ITYSRSSGPGGQ 100
LKF GV +PV G V I P + E+D ++ +RS G GGQ
Sbjct: 180 LKFEAGVHRVQRVPVTEAGGRVHTSTATVAIMPEVDDVEVEIDQKDIELSTARSGGAGGQ 239
Query: 101 HVNSVSTKVDIRFK 114
+VN V T VD+ K
Sbjct: 240 NVNKVETAVDLFHK 253
>sp|Q7U3W6|RF2_SYNPX Peptide chain release factor 2 OS=Synechococcus sp. (strain WH8102)
GN=prfB PE=3 SV=1
Length = 374
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 68 KFNGVIPVVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDI 111
K + + + IP ++L++T SRS G GGQ+VN V T V I
Sbjct: 224 KIDEEVDIDIPE-----KDLEVTTSRSGGAGGQNVNKVETAVRI 262
>sp|B0JYC5|RF1_MICAN Peptide chain release factor 1 OS=Microcystis aeruginosa (strain
NIES-843) GN=prfA PE=3 SV=1
Length = 366
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
++++T +RS G GGQ+VN V T VD+ K
Sbjct: 225 DIELTTARSGGAGGQNVNKVETAVDLIHK 253
>sp|Q1GAX5|RF1_LACDA Peptide chain release factor 1 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=prfA PE=3
SV=1
Length = 361
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 31/117 (26%)
Query: 59 IPVKAPDGLKFNGVIPV-VIPRFSYITEELD-----ITYSRSSGPGGQHVNSVSTKVDIR 112
IPV G V V+P + + +LD + RSSG GGQH+N S+ V
Sbjct: 189 IPVTESAGRVHTSTATVAVMPEYEQVDIDLDPKEIRVDVYRSSGAGGQHINKTSSAV--- 245
Query: 113 FKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIW 169
++ L G ++ D+ RSQQ N A AM L++ ++
Sbjct: 246 ---------------RMTHLPT------GIVVAMQDQ-RSQQQNRAKAMEILKSRVY 280
>sp|Q2JL68|RF1_SYNJB Peptide chain release factor 1 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=prfA PE=3 SV=1
Length = 360
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 53 LKFN-GV-----IPVKAPDGLKFNGVIPV-VIPRFSYIT-----EELDITYSRSSGPGGQ 100
LKF GV +PV G V V+P + ++++I +RS G GGQ
Sbjct: 180 LKFEAGVHRVQRVPVTEAQGRVHTSTATVAVMPEVDEVEVVIDPKDIEIKTARSGGAGGQ 239
Query: 101 HVNSVSTKVDIRFK 114
+VN V T VD+ K
Sbjct: 240 NVNKVETAVDLLHK 253
>sp|Q2JUK1|RF1_SYNJA Peptide chain release factor 1 OS=Synechococcus sp. (strain
JA-3-3Ab) GN=prfA PE=3 SV=1
Length = 361
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 45 DQVKAPDGLKFN-GV-----IPVKAPDGLKFNGVIPV-VIPRFSYIT-----EELDITYS 92
DQV + LKF GV +PV G V V+P + ++++I +
Sbjct: 175 DQVYSK--LKFEAGVHRVQRVPVTEAQGRVHTSTATVAVMPEVDEVEVVIDPKDIEIKTA 232
Query: 93 RSSGPGGQHVNSVSTKVDIRFK 114
RS G GGQ+VN V T VD+ K
Sbjct: 233 RSGGAGGQNVNKVETAVDLLHK 254
>sp|Q7ND15|RF1_GLOVI Peptide chain release factor 1 OS=Gloeobacter violaceus (strain PCC
7421) GN=prfA PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 53 LKFN-GV-----IPVKAPDGLKFNGVIPVVI-PRFSYITEEL-----DITYSRSSGPGGQ 100
LKF GV +PV G V I P + E+ +IT +RS G GGQ
Sbjct: 180 LKFEAGVHRVQRVPVTETQGRVHTSTATVAIMPEVEEVDVEINPNDIEITTTRSGGAGGQ 239
Query: 101 HVNSVSTKVDIRFKVNAANWLNEDVKKQL 129
+VN V T V + K + + ++ + QL
Sbjct: 240 NVNKVETAVHLVHKPSGIHIHCQEERSQL 268
>sp|Q7UZX1|RF1_PROMP Peptide chain release factor 1 OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=prfA PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
E++I +RS G GGQ+VN V T +D+ K
Sbjct: 225 EIEIGTARSGGAGGQNVNKVETAIDLIHK 253
>sp|Q042K5|RF1_LACGA Peptide chain release factor 1 OS=Lactobacillus gasseri (strain
ATCC 33323 / DSM 20243) GN=prfA PE=3 SV=1
Length = 362
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 59 IPVKAPDGLKFNGVIPV-VIPRFSYITEELD-----ITYSRSSGPGGQHVNSVSTKV 109
+PV G V V+P + + +LD + RSSG GGQH+N S+ V
Sbjct: 189 VPVTESQGRVHTSTATVAVMPEYEQVDIDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245
>sp|Q74K25|RF1_LACJO Peptide chain release factor 1 OS=Lactobacillus johnsonii (strain
CNCM I-12250 / La1 / NCC 533) GN=prfA PE=3 SV=1
Length = 362
Score = 33.9 bits (76), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 59 IPVKAPDGLKFNGVIPV-VIPRFSYITEELD-----ITYSRSSGPGGQHVNSVSTKV 109
+PV G V V+P + + +LD + RSSG GGQH+N S+ V
Sbjct: 189 VPVTESQGRVHTSTATVAVMPEYEQVDIDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245
>sp|Q89AC4|RF2_BUCBP Peptide chain release factor 2 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=prfB PE=3 SV=2
Length = 366
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 84 TEELDITYSRSSGPGGQHVNSVSTKVDIR 112
T +L I R+SG GGQHVN + V IR
Sbjct: 237 TRDLKIDVYRASGAGGQHVNKTESAVRIR 265
>sp|A8G733|RF1_PROM2 Peptide chain release factor 1 OS=Prochlorococcus marinus (strain
MIT 9215) GN=prfA PE=3 SV=1
Length = 364
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 86 ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
+L+I +RS G GGQ+VN V T +D+ K
Sbjct: 225 DLEIGTARSGGAGGQNVNKVETAIDLLHK 253
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,424,956
Number of Sequences: 539616
Number of extensions: 2848420
Number of successful extensions: 8994
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 8846
Number of HSP's gapped (non-prelim): 195
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)