Query psy14432
Match_columns 189
No_of_seqs 221 out of 1424
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 19:44:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j26_A Immature colon carcinom 100.0 6.8E-39 2.3E-43 247.8 13.4 95 81-175 16-110 (112)
2 2jva_A Peptidyl-tRNA hydrolase 100.0 3.2E-37 1.1E-41 237.1 10.9 100 76-176 4-103 (108)
3 4dh9_Y YAEJ; ribosome, YAEJ, r 100.0 3.4E-37 1.2E-41 246.2 7.6 101 75-176 3-103 (140)
4 2b3t_B RF-1, peptide chain rel 100.0 6.3E-32 2.2E-36 243.1 8.0 122 22-175 160-285 (360)
5 1zbt_A RF-1, peptide chain rel 100.0 5.8E-32 2E-36 244.0 7.7 118 23-172 175-295 (371)
6 3d5a_X RF1, peptide chain rele 100.0 4.9E-32 1.7E-36 243.4 6.7 119 23-173 157-278 (354)
7 1rq0_A RF-1, peptide chain rel 100.0 6E-32 2E-36 241.8 7.1 119 23-173 138-259 (342)
8 1gqe_A Release factor 2, RF2; 100.0 1.1E-31 3.7E-36 241.9 7.7 119 22-172 176-299 (365)
9 2rsm_A Probable peptide chain 100.0 4.9E-31 1.7E-35 204.6 9.4 95 48-175 15-111 (115)
10 2ihr_1 Peptide chain release f 100.0 4.8E-31 1.6E-35 237.7 8.0 119 22-172 164-287 (365)
11 2cte_A Vigilin; K homology typ 76.2 1.7 5.7E-05 31.1 2.6 54 96-174 33-88 (94)
12 1k1g_A SF1-BO isoform; splicin 67.7 12 0.00041 28.6 5.9 71 93-173 26-102 (131)
13 2ctl_A Vigilin; K homology typ 65.1 2.2 7.4E-05 30.8 1.2 58 94-173 31-90 (97)
14 2ctm_A Vigilin; K homology typ 62.9 38 0.0013 24.0 8.7 74 94-173 2-88 (95)
15 2ctj_A Vigilin; K homology typ 59.4 5.7 0.00019 28.6 2.5 53 95-172 32-87 (95)
16 2ctf_A Vigilin; K homology typ 58.9 6.1 0.00021 28.8 2.7 50 95-172 42-94 (102)
17 1vig_A Vigilin; RNA-binding pr 57.9 2.8 9.7E-05 28.3 0.6 48 95-167 20-69 (71)
18 2lfh_A DNA-binding protein inh 57.2 3 0.0001 29.2 0.7 25 146-170 18-42 (68)
19 2ctk_A Vigilin; K homology typ 55.9 6.5 0.00022 28.6 2.4 52 96-172 33-86 (104)
20 2yqr_A KIAA0907 protein; struc 47.5 19 0.00066 27.1 3.9 63 95-171 34-100 (119)
21 1we8_A Tudor and KH domain con 38.1 8.5 0.00029 27.7 0.6 56 95-171 30-87 (104)
22 2hh3_A KH-type splicing regula 37.5 35 0.0012 24.8 3.9 58 95-175 26-85 (106)
23 4aya_A DNA-binding protein inh 35.2 14 0.00049 27.3 1.4 25 146-170 29-53 (97)
24 2axy_A Poly(RC)-binding protei 32.8 24 0.00082 23.6 2.1 50 96-170 21-72 (73)
25 1rl2_A Protein (ribosomal prot 30.9 20 0.00067 27.9 1.6 36 80-118 84-119 (137)
26 2ftc_B Mitochondrial ribosomal 30.0 23 0.00079 27.5 1.9 27 90-118 80-106 (136)
27 1x4m_A FAR upstream element bi 26.3 15 0.00053 25.8 0.2 26 142-172 63-88 (94)
28 4fyl_A Ribosome hibernation pr 24.6 1.5E+02 0.0052 20.6 5.3 42 106-171 47-88 (95)
29 1zzk_A Heterogeneous nuclear r 24.1 24 0.00083 24.0 0.9 54 95-171 22-77 (82)
30 2opv_A KHSRP protein; KH domai 24.1 17 0.00059 24.9 0.2 22 143-169 63-84 (85)
31 1xao_A YDJ1, mitochondrial pro 23.5 90 0.0031 22.9 4.1 33 104-136 67-99 (121)
32 3r8s_C 50S ribosomal protein L 22.3 89 0.0031 26.9 4.3 37 79-118 142-178 (271)
33 1j5k_A Heterogeneous nuclear r 22.1 26 0.0009 24.3 0.8 27 140-171 58-84 (89)
34 2p2r_A Poly(RC)-binding protei 21.6 25 0.00085 23.5 0.5 51 96-169 21-73 (76)
35 2jvz_A KH type-splicing, FAR u 21.3 54 0.0018 24.3 2.5 55 95-172 106-162 (164)
36 2jzx_A Poly(RC)-binding protei 21.2 39 0.0013 25.3 1.6 52 96-172 21-74 (160)
37 3v2d_D 50S ribosomal protein L 20.8 95 0.0032 26.9 4.2 37 79-118 144-180 (276)
38 1x4n_A FAR upstream element bi 20.2 2.2E+02 0.0075 19.5 6.3 29 142-175 61-89 (92)
39 1wvn_A Poly(RC)-binding protei 20.0 34 0.0012 23.2 1.0 54 95-171 21-76 (82)
No 1
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=100.00 E-value=6.8e-39 Score=247.81 Aligned_cols=95 Identities=40% Similarity=0.732 Sum_probs=91.1
Q ss_pred CcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHH
Q psy14432 81 SYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADA 160 (189)
Q Consensus 81 ~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~A 160 (189)
.|++++|+++|+|||||||||||||+|||+|+||++++.|||+++|++|++++.+||+++|.|+|+||++|||++|+++|
T Consensus 16 ~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~A 95 (112)
T 1j26_A 16 YIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAEC 95 (112)
T ss_dssp CCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHHHHH
T ss_pred ecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHHHHHH
Confidence 34449999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCC
Q psy14432 161 MTTLRNMIWKAAKPA 175 (189)
Q Consensus 161 l~kL~~~I~~a~~~p 175 (189)
|++|+++|+++..+|
T Consensus 96 l~rL~~~l~~a~~~p 110 (112)
T 1j26_A 96 LQKIRDMIAEASGPS 110 (112)
T ss_dssp HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhhcCC
Confidence 999999999998765
No 2
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=100.00 E-value=3.2e-37 Score=237.10 Aligned_cols=100 Identities=35% Similarity=0.543 Sum_probs=94.0
Q ss_pred ccCCCCcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHH
Q psy14432 76 VIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQL 155 (189)
Q Consensus 76 ~~~~~~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~ 155 (189)
+.+++.|+++||+++|+|||||||||||||+|||+|+|++.. .|||+++|++|++++.+||+++|.|+|+||++|||.+
T Consensus 4 i~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~-s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~ 82 (108)
T 2jva_A 4 ISNNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINA-SSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQ 82 (108)
T ss_dssp CSSSCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTT-SCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHH
T ss_pred cccccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEccc-ccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHH
Confidence 456788999999999999999999999999999999999954 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCC
Q psy14432 156 NLADAMTTLRNMIWKAAKPAP 176 (189)
Q Consensus 156 Nr~~Al~kL~~~I~~a~~~pk 176 (189)
|+++|+++|+++|+++...|-
T Consensus 83 Nr~~Al~rL~~~l~~a~~~~~ 103 (108)
T 2jva_A 83 NRADALLRLSELIVNAAKLEH 103 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHccCcc
Confidence 999999999999999976553
No 3
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=100.00 E-value=3.4e-37 Score=246.21 Aligned_cols=101 Identities=35% Similarity=0.506 Sum_probs=96.4
Q ss_pred cccCCCCcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHH
Q psy14432 75 VVIPRFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQ 154 (189)
Q Consensus 75 ~~~~~~~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~ 154 (189)
.+.+++.|++++|+|+|+|||||||||||||+|+|+|+|++..+ |||++++++|++.+.+||+++|.|+|+||++|||+
T Consensus 3 ~i~~~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s-~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~ 81 (140)
T 4dh9_Y 3 VISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRAS-SLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQE 81 (140)
T ss_dssp CCCSSSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSS-SSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHH
T ss_pred cccCCCccChHHeEEEEEECCCCCCCccccccceEEEEEecccc-cCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHH
Confidence 45678999999999999999999999999999999999999876 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC
Q psy14432 155 LNLADAMTTLRNMIWKAAKPAP 176 (189)
Q Consensus 155 ~Nr~~Al~kL~~~I~~a~~~pk 176 (189)
+|+++|+++|+++|.++..+|+
T Consensus 82 ~Nr~~A~~rL~~~l~~a~~~pk 103 (140)
T 4dh9_Y 82 LNREAALARLVAMIKELTTEKK 103 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999987765
No 4
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=99.97 E-value=6.3e-32 Score=243.07 Aligned_cols=122 Identities=24% Similarity=0.282 Sum_probs=110.9
Q ss_pred eeeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC-C-CCcCCCCeEEEEeccCCC
Q psy14432 22 YKSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP-R-FSYITEELDITYSRSSGP 97 (189)
Q Consensus 22 ~~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~-~-~~i~~~~l~i~fsRSSGP 97 (189)
-...+.++- ++.|+.|+.++++|| +.| .++++||+|| |+++|.|+|++++ . +.|+++||+++|+|||||
T Consensus 160 k~~~~~i~G--~~ayg~Lk~E~GvHRvqRvp-~~es~gR~hT----S~asV~V~Pe~~~~e~i~i~~~dl~i~~~RssG~ 232 (360)
T 2b3t_B 160 KEIIAKISG--DGVYGRLKFESGGHRVQRVP-ATESQGRIHT----SACTVAVMPELPDAELPDVNPADLRIDTFRSSGA 232 (360)
T ss_dssp EEEEEEECS--SSCHHHHGGGCEEEEEEECC-TTCSSCCCEE----EEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCC
T ss_pred eEEEEEEEc--ccHHHHHHhccCeEEEEecC-CCcccCcCCc----cceEEEEecCcccccccccChhheEEeeecCCCC
Confidence 344567777 889999999999998 788 8999999999 5799999999976 4 779999999999999999
Q ss_pred CccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhCCC
Q psy14432 98 GGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPA 175 (189)
Q Consensus 98 GGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~~p 175 (189)
||||||||+|+|+|+ |+|++ |+|+|+++|||++|++.|+++|+++|+++....
T Consensus 233 GGQ~VNkt~saVrl~-hlPtG------------------------ivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~ 285 (360)
T 2b3t_B 233 GGQHVNTTDSAIRIT-HLPTG------------------------IVVECQDERSQHKNKAKALSVLGARIHAAEMAK 285 (360)
T ss_dssp CTTTCCCSSEEEEEE-ETTTC------------------------CEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTS
T ss_pred CCCccccccceEEEE-ECCCe------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 89987 999999999999999999999999999986543
No 5
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=99.97 E-value=5.8e-32 Score=244.04 Aligned_cols=118 Identities=22% Similarity=0.261 Sum_probs=100.0
Q ss_pred eeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC-CCCcCCCCeEEEEeccCCCCc
Q psy14432 23 KSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP-RFSYITEELDITYSRSSGPGG 99 (189)
Q Consensus 23 ~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~-~~~i~~~~l~i~fsRSSGPGG 99 (189)
...+.++- ++.|+.|+.++++|| +.| .++++||+|| |+++|+|+|++++ .+.|+++||+++|+|||||||
T Consensus 175 sv~~~I~G--~~ayg~Lk~EsGvHRvqRvp-~tes~gR~hT----S~asV~V~Pe~~ev~i~I~~~dl~i~~~RssGpGG 247 (371)
T 1zbt_A 175 EVVAMVSG--QSVYSKLKYESGAHRVQRVP-VTESQGRVHT----STATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGG 247 (371)
T ss_dssp EEEEEEES--TTHHHHHGGGCEEEEEEECC-TTCSSCCCEE----EEEEEEEEECCCGGGSCCCGGGEEEEEECC-----
T ss_pred EEEEEEEC--ccHHHHHhhccCeEEEEeec-CCCCCCcccc----cceEEEEeccccccccccCcCcEEEEEecCCCCCC
Confidence 34566776 888999999999998 788 8999999999 4699999999875 678999999999999999999
Q ss_pred cCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432 100 QHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA 172 (189)
Q Consensus 100 QnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~ 172 (189)
||||||+|+|+|+ |+|++ |+|+|+++|||++|++.|+++|+++|+++.
T Consensus 248 Q~VNkt~SaVrlt-hlPtG------------------------ivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~ 295 (371)
T 1zbt_A 248 QNVNKVATAVRII-HLPTN------------------------IKVEMQEERTQQKNRDKAMKIIRARVADHF 295 (371)
T ss_dssp ----CCCCEEEEE-ETTTT------------------------EEEEECSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccceeEEEE-ECCCe------------------------EEEEECCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 89998 999999999999999999999999999875
No 6
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=99.97 E-value=4.9e-32 Score=243.36 Aligned_cols=119 Identities=24% Similarity=0.351 Sum_probs=109.5
Q ss_pred eeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC-CCCcCCCCeEEEEeccCCCCc
Q psy14432 23 KSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP-RFSYITEELDITYSRSSGPGG 99 (189)
Q Consensus 23 ~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~-~~~i~~~~l~i~fsRSSGPGG 99 (189)
...+.++- ++.|+.|+.++++|| +.| .++++||+|| |+++|+|+|++++ ++.|+++||+++|+|||||||
T Consensus 157 ~v~~~i~G--~~ayg~Lk~E~GvHRvqRvp-~~es~gR~hT----S~asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GG 229 (354)
T 3d5a_X 157 KVVFEVRG--PGAYGTFKYESGVHRVQRVP-VTETQGRIHT----STATVAVLPKAEEEDFALNMDEIRIDVMRASGPGG 229 (354)
T ss_dssp EEEEEEES--TTHHHHHGGGCSEEEEEECC-SSCSSCCCEE----EEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCH
T ss_pred EEEEEEEC--ccHHHHHHhccCeeEEEecC-CcCCCCcCcc----CceEEEEeccCcccccccCccceEEEeecCCCCCC
Confidence 34566776 888999999999998 788 8999999999 4699999999875 678999999999999999999
Q ss_pred cCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432 100 QHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK 173 (189)
Q Consensus 100 QnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~ 173 (189)
||||||+|+|+|+ |+|++ |+|+|+++|||++|++.|+++|+++|+++..
T Consensus 230 Q~VNkt~SaVrl~-HlPtg------------------------ivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 278 (354)
T 3d5a_X 230 QGVNTTDSAVRVV-HLPTG------------------------IMVTCQDSRSQIKNREKALMILRSRLLEMKR 278 (354)
T ss_dssp HHHHHCCCEEEEE-ETTTT------------------------EEEEECCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceEEEE-EcCCe------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99998 9999999999999999999999999999864
No 7
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=99.97 E-value=6e-32 Score=241.84 Aligned_cols=119 Identities=24% Similarity=0.317 Sum_probs=105.4
Q ss_pred eeeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC-CCCcCCCCeEEEEeccCCCCc
Q psy14432 23 KSSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP-RFSYITEELDITYSRSSGPGG 99 (189)
Q Consensus 23 ~s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~-~~~i~~~~l~i~fsRSSGPGG 99 (189)
...+.++- ++.|+.|+.++++|| +.| .++++||+|| |+++|.|+|++++ ++.|+++||+++|+|||||||
T Consensus 138 s~~~~I~G--~~ayg~Lk~E~GvHRvqRvp-~~es~gR~hT----S~asV~V~Pe~~~~~i~i~~~dl~i~~~RssGpGG 210 (342)
T 1rq0_A 138 EVVFFVKG--KNAYGILKYESGVHRVQRVP-VTESGGRIHT----STATVAVLPEIEEKDIEIRPEDLKIETFRASGHGG 210 (342)
T ss_dssp EEEEEEES--TTHHHHHGGGCEEEEEEECC-TTSCSCCCEE----EEEEEEEEECCCGGGSCCCGGGEEEEEECCCC---
T ss_pred EEEEEEEC--cCHHHHHhhccCeEEEEecC-CcccCCCCcc----cceEEEEeccccccccccChhHeEEEeecCCCCCC
Confidence 44567776 888999999999998 788 8999999999 4799999999875 678999999999999999999
Q ss_pred cCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432 100 QHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK 173 (189)
Q Consensus 100 QnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~ 173 (189)
||||||+|+|+|+ |+|++ |+|+|+++|||++|+++|+++|+++|+++..
T Consensus 211 Q~VNKt~SaVrl~-hlPtG------------------------ivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 259 (342)
T 1rq0_A 211 QYVNKTESAVRIT-HLPTG------------------------IVVSCQNERSQYQNKQTALRILRARLYQLQK 259 (342)
T ss_dssp -CCSSSSEEEEEE-ETTTC------------------------CEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceEEEE-ECCCe------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99987 9999999999999999999999999998753
No 8
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=99.97 E-value=1.1e-31 Score=241.94 Aligned_cols=119 Identities=24% Similarity=0.320 Sum_probs=108.8
Q ss_pred eee-eeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccCC
Q psy14432 22 YKS-SISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSSG 96 (189)
Q Consensus 22 ~~s-~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSSG 96 (189)
||+ .+.++- ++.|+.|+.++++|| +.| .++++||+|| |+++|.|+|++++ ++.|+++||+++|+||||
T Consensus 176 ~Ks~~~~I~G--~~ayg~Lk~EsGvHRvqRvs-~~es~gRrhT----S~asV~V~Pe~~~~v~i~i~~~dl~~~~~RssG 248 (365)
T 1gqe_A 176 IKSVTIKISG--DYAYGWLRTETGVHRLVRKS-PFDSGGRRHT----SFSSAFVYPEVDDDIDIEINPADLRIDVYRASG 248 (365)
T ss_dssp EEEEEEEEES--TTHHHHHGGGCEEEEEEEEC-TTSSSCCEEE----EEEEEEEEECCBTTBCCCCCGGGEEEEEECCCC
T ss_pred eeEEEEEEEC--cCHHHHhhhccceEEEEEeC-CCCCcCCCCc----ceeEEEEecCCCcccccccCHHHceEeeecCCC
Confidence 444 566666 888999999999998 778 8999999999 5699999999964 577899999999999999
Q ss_pred CCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432 97 PGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA 172 (189)
Q Consensus 97 PGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~ 172 (189)
|||||||||+|+|+|+ |+|++ |+|+|+++|||++|++.|+++|+++|+++.
T Consensus 249 ~GGQ~VNkt~saVrl~-HiPtg------------------------ivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~ 299 (365)
T 1gqe_A 249 AGGQHVNRTESAVRIT-HIPTG------------------------IVTQCQNDRSQHKNKDQAMKQMKAKLYEVE 299 (365)
T ss_dssp SSCCSTTSSCCEEEEE-ETTTC------------------------CEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCccceEEEE-ECCCe------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99998 999999999999999999999999999864
No 9
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=99.97 E-value=4.9e-31 Score=204.60 Aligned_cols=95 Identities=24% Similarity=0.294 Sum_probs=87.5
Q ss_pred CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCCCccCHHH
Q psy14432 48 KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDV 125 (189)
Q Consensus 48 ~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~~~ 125 (189)
+.| .++++| | ++++|.|+|+.+. .+.|+++||+++|+|||||||||||||+|+|+|+ |+|++
T Consensus 15 rvp-~tes~g---t----s~~~v~v~p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~-H~PTG------- 78 (115)
T 2rsm_A 15 EKP-ALLFPG---M----AASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLK-HVPSG------- 78 (115)
T ss_dssp CCC-CCCCCC---C----CCCCCCCCSCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEE-CTTTC-------
T ss_pred ecC-cccCCc---c----ceEEEEeccccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEe-cCCCC-------
Confidence 566 889999 6 4699999999864 5889999999999999999999999999999999 99998
Q ss_pred HHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhCCC
Q psy14432 126 KKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPA 175 (189)
Q Consensus 126 r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~~p 175 (189)
|+|+|+++|||++|+++||++|+++|++....+
T Consensus 79 -----------------ivV~~q~~RSQ~~Nr~~A~~~L~~kL~e~~~~~ 111 (115)
T 2rsm_A 79 -----------------IVVKCHQTRSVDQNRKIARKVLQEKVDVFYNSG 111 (115)
T ss_dssp -----------------CEEEECCSSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred -----------------cEEEEcCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999986543
No 10
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=99.97 E-value=4.8e-31 Score=237.72 Aligned_cols=119 Identities=25% Similarity=0.305 Sum_probs=108.4
Q ss_pred ee-eeeeccccCCCCCCCccCCCCCCC--CCCCCCcccccccccCCCCcceeEEeecccC--CCCcCCCCeEEEEeccCC
Q psy14432 22 YK-SSISLDKLYPNSSMLLKTPTPDQV--KAPDGLKFNGVIPVKAPDGLKFNGVIPVVIP--RFSYITEELDITYSRSSG 96 (189)
Q Consensus 22 ~~-s~~sld~lyp~s~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~v~p~~~~--~~~i~~~~l~i~fsRSSG 96 (189)
|| ..+.++- ++.|+.|+.++++|| +.| .++++|++|| |+++|.|+|++++ ++.|+++||+++|+||||
T Consensus 164 ~ks~~~~I~G--~~ayg~Lk~E~GvHRvqRvs-~~es~gRrhT----S~asV~V~P~~~~~~~i~i~~~dl~i~~~RssG 236 (365)
T 2ihr_1 164 IDYAQILVKG--ENAYGLLSPEAGVHRLVRPS-PFDASGRRHT----SFAGVEVIPEVDEEVEVVLKPEELRIDVMRASG 236 (365)
T ss_dssp EEEEEEEEES--TTHHHHHGGGCEEEEEEEEC-TTSSSCCEEE----EEEEEEEEEECCSSSSCCCCGGGEEEEEECCCC
T ss_pred eEEEEEEEEc--cCHHHhhhhCcCEEEEEEeC-CCCccCCccc----eeEEEEEecCCCcccccccCccceEEEEeecCC
Confidence 44 4566666 888999999999998 788 8999999999 5699999999864 578899999999999999
Q ss_pred CCccCCCcccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432 97 PGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA 172 (189)
Q Consensus 97 PGGQnVNKv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~ 172 (189)
|||||||||+|+|+|+ |+|++ |+|+|+++|||++|++.|+++|+++|++..
T Consensus 237 ~GGQ~VNkt~saVrl~-h~Ptg------------------------ivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~ 287 (365)
T 2ihr_1 237 PGGQGVNTTDSAVRVV-HLPTG------------------------ITVTCQTTRSQIKNKELALKILKARLYELE 287 (365)
T ss_dssp SSCCSGGGSCSEEEEE-ETTTT------------------------EEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceecccceEEEEE-EcCCe------------------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 89988 999999999999999999999999999864
No 11
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=76.18 E-value=1.7 Score=31.10 Aligned_cols=54 Identities=13% Similarity=0.235 Sum_probs=37.3
Q ss_pred CCCccCCCcc--cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhhC
Q psy14432 96 GPGGQHVNSV--STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAK 173 (189)
Q Consensus 96 GPGGQnVNKv--~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~ 173 (189)
||||.++++. .|.|.| +++... ..+|.+.|... ..+.+.|.+++..++.+...
T Consensus 33 G~gG~~Ik~I~~etg~~I--~i~~~~------------------~~~~~V~I~G~-----~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 33 GKNGEKLQDLELKTATKI--QIPRPD------------------DPSNQIKITGT-----KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CSSSCHHHHHHHHTTCCC--BCCCTT------------------SSCCEEEEEEC-----HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHCCEE--EeCCCC------------------CCCCeEEEEEC-----HHHHHHHHHHHHHHhhcccc
Confidence 9999999975 344444 344320 13577888764 56788899999999988754
Q ss_pred C
Q psy14432 174 P 174 (189)
Q Consensus 174 ~ 174 (189)
.
T Consensus 88 ~ 88 (94)
T 2cte_A 88 R 88 (94)
T ss_dssp C
T ss_pred c
Confidence 3
No 12
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=67.70 E-value=12 Score=28.55 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=39.5
Q ss_pred ccCCCCccCCCc----ccceEEEEEecCCCCccCHHHHHHHHHH--hcccccCCceEEEEEcCcccHHHHHHHHHHHHHH
Q psy14432 93 RSSGPGGQHVNS----VSTKVDIRFKVNAANWLNEDVKKQLIEL--NKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRN 166 (189)
Q Consensus 93 RSSGPGGQnVNK----v~SkV~Lrfhl~s~~wLp~~~r~~L~~~--~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~ 166 (189)
+==||||.+++. |..++.|+ .--+. .+.-+. ... -..-.+.++.+.|++... ...+.|++.+..
T Consensus 26 ~IIGP~G~tiK~Iq~eTG~kI~Ir-gkgS~---~~~~~~--~~~~~~~~~~~e~lhV~I~a~~~----e~~~~A~~~I~~ 95 (131)
T 1k1g_A 26 LLIGPRGNTLKNIEKECNAKIMIR-GKGSV---KEGKVG--RKDGQMLPGEDEPLHALVTANTM----ENVKKAVEQIRN 95 (131)
T ss_dssp HHHCSSSHHHHHHHHHSCCEEEEE-ESTTS---SSSSSS--SCCCCCSCCSSCCEEEEEEESSH----HHHHHHHHHHHH
T ss_pred eEECCCcHHHHHHHHHHCCeEEec-CCccc---cccccc--ccccccccccCCCeEEEEEECCH----HHHHHHHHHHHH
Confidence 446999988875 45566665 22111 000000 000 000134578888988753 467888888888
Q ss_pred HHHHhhC
Q psy14432 167 MIWKAAK 173 (189)
Q Consensus 167 ~I~~a~~ 173 (189)
+|..+..
T Consensus 96 ll~~~~~ 102 (131)
T 1k1g_A 96 ILKQGIE 102 (131)
T ss_dssp HHTTTTS
T ss_pred HHhccCC
Confidence 8876543
No 13
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=65.11 E-value=2.2 Score=30.81 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=37.1
Q ss_pred cCCCCccCCCcc--cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHh
Q psy14432 94 SSGPGGQHVNSV--STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKA 171 (189)
Q Consensus 94 SSGPGGQnVNKv--~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a 171 (189)
==||||.++|+. .|.|.|. ++...- + -..+..+.|+.. ..|.+.|.+.+..++.+.
T Consensus 31 IIGkgG~~Ik~I~~etg~~I~--i~~~g~-~--------------~~~~~~V~I~G~-----~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 31 IIGRKGAVITQIRLEHDVNIQ--FPDKDD-G--------------NQPQDQITITGY-----EKNTEAARDAILRIVGEL 88 (97)
T ss_dssp HSCSSSCHHHHHHHHHTCEEE--CCCTTT-C--------------SSCSSEEEEESC-----HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchhHHHHHHHHCCEEE--ecCCCC-C--------------CCCccEEEEEeC-----HHHHHHHHHHHHHHHHHH
Confidence 359999999986 4566665 443200 0 012235777753 347888999999998876
Q ss_pred hC
Q psy14432 172 AK 173 (189)
Q Consensus 172 ~~ 173 (189)
..
T Consensus 89 e~ 90 (97)
T 2ctl_A 89 EQ 90 (97)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 14
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=62.89 E-value=38 Score=24.02 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=46.5
Q ss_pred cCCCCccCCCcccceEEEEEecCCCCccCH------HHHHHHHHHhccccc--CCc-----eEEEEEcCcccHHHHHHHH
Q psy14432 94 SSGPGGQHVNSVSTKVDIRFKVNAANWLNE------DVKKQLIELNKNRLN--KDG-----YLIIKSDRTRSQQLNLADA 160 (189)
Q Consensus 94 SSGPGGQnVNKv~SkV~Lrfhl~s~~wLp~------~~r~~L~~~~~~ri~--k~G-----~LvI~s~~~RSQ~~Nr~~A 160 (189)
|||.+++-|+..+..+.+.+.++.. -+.. ....+|.+...-+|+ .+| .+.|... ..|.+.|
T Consensus 2 ~~~~~~~iv~~l~~~vt~~i~Ip~~-~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-----~e~v~~A 75 (95)
T 2ctm_A 2 SSGSSGRIVGELEQMVSEDVPLDHR-VHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-----PENVEEA 75 (95)
T ss_dssp CSSCCSCCCCCTTTCCCEEEECCTT-THHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-----HHHHHHH
T ss_pred CCccHhHHHHhhcccEEEEEEECHH-HccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-----HHHHHHH
Confidence 5677777777777777777776653 1111 123444455544433 344 5666643 2689999
Q ss_pred HHHHHHHHHHhhC
Q psy14432 161 MTTLRNMIWKAAK 173 (189)
Q Consensus 161 l~kL~~~I~~a~~ 173 (189)
.+.|..++.+.+.
T Consensus 76 ~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 76 IDHILNLEEEYLA 88 (95)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 15
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=59.38 E-value=5.7 Score=28.64 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=34.9
Q ss_pred CCCCccCCCccc--c-eEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHh
Q psy14432 95 SGPGGQHVNSVS--T-KVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKA 171 (189)
Q Consensus 95 SGPGGQnVNKv~--S-kV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a 171 (189)
=||||.++++.- + .|.|. ++... ..+..+.|... .. +.+.|.+++..++.+.
T Consensus 32 IG~gGk~Ir~I~eetggv~I~--i~~~g------------------~~~~~V~I~G~----~~-~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 32 IGTKGRLIRSIMEECGGVHIH--FPVEG------------------SGSDTVVIRGP----SS-DVEKAKKQLLHLAEEK 86 (95)
T ss_dssp HCSSSHHHHHHHHHHTSCEEE--CCCTT------------------TTCCEEEEESC----HH-HHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHcCCCEEE--eCCCC------------------CCcceEEEEcC----HH-HHHHHHHHHHHHHhhh
Confidence 599999999863 3 45554 44320 11236777765 22 7889999999998876
Q ss_pred h
Q psy14432 172 A 172 (189)
Q Consensus 172 ~ 172 (189)
.
T Consensus 87 e 87 (95)
T 2ctj_A 87 Q 87 (95)
T ss_dssp S
T ss_pred h
Confidence 4
No 16
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=58.86 E-value=6.1 Score=28.78 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=35.2
Q ss_pred CCCCccCCCcccc---eEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHh
Q psy14432 95 SGPGGQHVNSVST---KVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKA 171 (189)
Q Consensus 95 SGPGGQnVNKv~S---kV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a 171 (189)
=|+||+++++.-. +|.+. +|. .++.+.|+-. ....+.|...|..++.+.
T Consensus 42 IG~~G~~Ik~i~~~~~~v~I~--fp~---------------------~~~~ItI~G~-----~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 42 IGKKGQNLAKITQQMPKVHIE--FTE---------------------GEDKITLEGP-----TEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp HTTTTCHHHHHHHHCSSSEEE--ECS---------------------SSCEEEEEEC-----HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHcCCcEEE--eCC---------------------CCCEEEEECC-----HHHHHHHHHHHHHHHHHH
Confidence 5999999998654 56665 443 1345676655 566888888888888775
Q ss_pred h
Q psy14432 172 A 172 (189)
Q Consensus 172 ~ 172 (189)
.
T Consensus 94 ~ 94 (102)
T 2ctf_A 94 I 94 (102)
T ss_dssp H
T ss_pred H
Confidence 3
No 17
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=57.90 E-value=2.8 Score=28.31 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=30.3
Q ss_pred CCCCccCCCcc--cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHH
Q psy14432 95 SGPGGQHVNSV--STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNM 167 (189)
Q Consensus 95 SGPGGQnVNKv--~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~ 167 (189)
=||||.++|+. .|.|.+. ++... ..+..+.|.... .+.+.|.+.+..+
T Consensus 20 IG~gG~~I~~I~e~tg~~I~--i~~~g------------------~~~~~V~I~G~~-----~~v~~A~~~I~~i 69 (71)
T 1vig_A 20 IGKSGANINRIKDQYKVSVR--IPPDS------------------EKSNLIRIEGDP-----QGVQQAKRELLEL 69 (71)
T ss_dssp TCSSCCHHHHHHHHTCCEEE--CCCCC------------------SSSEEEEEEESS-----HHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHCCEEE--ECCCC------------------CcccEEEEEcCH-----HHHHHHHHHHHHH
Confidence 59999999985 4566665 44320 012257777652 3577887777664
No 18
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=57.24 E-value=3 Score=29.22 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=21.9
Q ss_pred EEcCcccHHHHHHHHHHHHHHHHHH
Q psy14432 146 KSDRTRSQQLNLADAMTTLRNMIWK 170 (189)
Q Consensus 146 ~s~~~RSQ~~Nr~~Al~kL~~~I~~ 170 (189)
.++.+|.+..+..+|+++||..|=.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~ 42 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPG 42 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4789999999999999999998643
No 19
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=55.91 E-value=6.5 Score=28.62 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=35.5
Q ss_pred CCCccCCCcc--cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432 96 GPGGQHVNSV--STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA 172 (189)
Q Consensus 96 GPGGQnVNKv--~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~ 172 (189)
|+||-++++. .|.|.|. ++... ..++.+.|... + .+.+.|.+.+..++.+..
T Consensus 33 G~gG~~Ir~I~eetg~~I~--I~~~g------------------~~~~~V~I~G~----~-e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIH--VPAPE------------------LQSDIIAITGL----A-ANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEE--CCCTT------------------TTCCEEEEEEC----H-HHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEE--ecCCC------------------CCcceEEEEcC----H-HHHHHHHHHHHHHHhhHH
Confidence 9999999985 4566655 44320 01236788765 3 678999999999887754
No 20
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.54 E-value=19 Score=27.10 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=37.1
Q ss_pred CCCCccCCCc----ccceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHH
Q psy14432 95 SGPGGQHVNS----VSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWK 170 (189)
Q Consensus 95 SGPGGQnVNK----v~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~ 170 (189)
=||||.++++ |..+|.|+ .--+. -+.+ ....-.+.+|.+.|.+... .+.+.|.+.+..+|..
T Consensus 34 IGpgG~tiK~I~~eTG~kI~I~-G~gS~-~~e~--------~~~~e~~e~l~V~I~a~~~----e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 34 EGPGCSYLQHIQIETGAKVFLR-GKGSG-CIEP--------ASGREAFEPMYIYISHPKP----EGLAAAKKLCENLLQT 99 (119)
T ss_dssp SCGGGHHHHHHHHHHCCEEEEE-SBTTT-CCCT--------TTSSCCSSBCEEEEEESSH----HHHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHCCEEEEe-cCCcc-cccc--------ccccccCCCcEEEEEeCCH----HHHHHHHHHHHHHhhc
Confidence 6999999976 44555554 11111 0000 0112245677889988753 4577888888888775
Q ss_pred h
Q psy14432 171 A 171 (189)
Q Consensus 171 a 171 (189)
.
T Consensus 100 v 100 (119)
T 2yqr_A 100 V 100 (119)
T ss_dssp H
T ss_pred h
Confidence 4
No 21
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=38.12 E-value=8.5 Score=27.71 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=34.6
Q ss_pred CCCCccCCCcc--cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHh
Q psy14432 95 SGPGGQHVNSV--STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKA 171 (189)
Q Consensus 95 SGPGGQnVNKv--~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a 171 (189)
=|+||.++++. .|.|.|.++ ... ...-..++.+.|..... +.+.|.+.+.+++.+.
T Consensus 30 IGkgG~~Ik~I~~~tga~I~I~--~~~--------------~~~~~~~~~V~I~G~~~-----~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 30 IGRGGETIRSICKASGAKITCD--KES--------------EGTLLLSRLIKISGTQK-----EVAAAKHLILEKVSED 87 (104)
T ss_dssp HTTTSHHHHHHHHHHCCEEEEC--CSS--------------CCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHCCEEEEe--cCC--------------CCCCCCcceEEEEcCHH-----HHHHHHHHHHHHHhhC
Confidence 49999999874 345555433 210 00012356677876533 5788999999988764
No 22
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=37.48 E-value=35 Score=24.76 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCCCccCCCcc--cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432 95 SGPGGQHVNSV--STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA 172 (189)
Q Consensus 95 SGPGGQnVNKv--~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~ 172 (189)
=|+||.++++. .|.|+|.++-... -+.+-.+.|+.. ..+.+.|.+.+.++|.+..
T Consensus 26 IGkgG~~Ik~I~~~TGakI~I~~~~~------------------~~~er~V~I~G~-----~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 26 IGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP-----PDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp HTTTTHHHHHHHHHHTCEEEECSSCS------------------SSSEEEEEEESS-----HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHCcEEEEecCCC------------------CCceeEEEEEeC-----HHHHHHHHHHHHHHHhccc
Confidence 48899888875 4455554331111 001113555543 4678899999999999886
Q ss_pred CCC
Q psy14432 173 KPA 175 (189)
Q Consensus 173 ~~p 175 (189)
.-|
T Consensus 83 ~g~ 85 (106)
T 2hh3_A 83 SGP 85 (106)
T ss_dssp ---
T ss_pred cCC
Confidence 544
No 23
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=35.19 E-value=14 Score=27.34 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.8
Q ss_pred EEcCcccHHHHHHHHHHHHHHHHHH
Q psy14432 146 KSDRTRSQQLNLADAMTTLRNMIWK 170 (189)
Q Consensus 146 ~s~~~RSQ~~Nr~~Al~kL~~~I~~ 170 (189)
.++++|+...+..+|++.|+..|=.
T Consensus 29 ~~~~~r~Rm~~lN~AF~~LR~~vP~ 53 (97)
T 4aya_A 29 PVDDPMSLLYNMNDCYSKLKELVPS 53 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHCCC
Confidence 4788899999999999999998754
No 24
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=32.80 E-value=24 Score=23.62 Aligned_cols=50 Identities=10% Similarity=0.191 Sum_probs=31.2
Q ss_pred CCCccCCCcc--cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHH
Q psy14432 96 GPGGQHVNSV--STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWK 170 (189)
Q Consensus 96 GPGGQnVNKv--~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~ 170 (189)
|+||.++++. .|.+.+.++-. + ..+..+.|... ..+...|.+.+.++|.+
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~-~-------------------~~er~v~I~G~-----~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEG-N-------------------CPERIITLAGP-----TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSS-C-------------------CSEEEEEEEEC-----HHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHCCEEEEecC-C-------------------CCcEEEEEEeC-----HHHHHHHHHHHHHHHhc
Confidence 9999999875 55666654321 1 01123555554 45678888888888764
No 25
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=30.87 E-value=20 Score=27.91 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=28.1
Q ss_pred CCcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCC
Q psy14432 80 FSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAA 118 (189)
Q Consensus 80 ~~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~ 118 (189)
++..+.+ -=.++||+|--.|=|.|....|.|+ ||++
T Consensus 84 IE~~pG~-gg~laRsAGt~a~ii~ke~~~~~vr--LPSG 119 (137)
T 1rl2_A 84 IELKPGR-GGQLVRAAGTSAQVLGKEGKYVIVR--LASG 119 (137)
T ss_dssp EESSTTS-CEEESSSSSCCEEEEEEETTEEEEE--CTTS
T ss_pred EEccCCC-CcEEEEeCCCeEEEEEEcCCEEEEE--CCCC
Confidence 3333333 3469999999999999999999987 8876
No 26
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=29.99 E-value=23 Score=27.51 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.6
Q ss_pred EEeccCCCCccCCCcccceEEEEEecCCC
Q psy14432 90 TYSRSSGPGGQHVNSVSTKVDIRFKVNAA 118 (189)
Q Consensus 90 ~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~ 118 (189)
.|+||+|--.|=|.|....|.|+ ||++
T Consensus 80 ~laRsAGt~a~ii~ke~~~~~vr--LPSG 106 (136)
T 2ftc_B 80 QYIRAAGTCGVLLRKVNGTAIIQ--LPSK 106 (136)
T ss_pred EEEEeCCCeEEEEEecCCEEEEE--CCCC
Confidence 69999999999999999999887 8886
No 27
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=26.25 E-value=15 Score=25.82 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=17.7
Q ss_pred eEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432 142 YLIIKSDRTRSQQLNLADAMTTLRNMIWKAA 172 (189)
Q Consensus 142 ~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~ 172 (189)
.+.|..+. .+.+.|.+.+.++|.+..
T Consensus 63 ~v~I~G~~-----~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 63 PLRITGDP-----YKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp EEEEEECT-----TTHHHHHHHHHHHHCCCS
T ss_pred EEEEEeCH-----HHHHHHHHHHHHHHhccC
Confidence 37777632 256788888888887654
No 28
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=24.57 E-value=1.5e+02 Score=20.59 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=28.9
Q ss_pred cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHh
Q psy14432 106 STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKA 171 (189)
Q Consensus 106 ~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a 171 (189)
..+|+++++++.. .+......-.-..=.+.|+++|...|+..
T Consensus 47 ~~~vei~i~~~g~------------------------~l~a~~~~~d~y~AiD~a~dklerQlrk~ 88 (95)
T 4fyl_A 47 RQIAEATLHVNQA------------------------EIHAHADDENMYAAIDSLVDKLVRQLNKH 88 (95)
T ss_dssp EEEEEEEEEETTE------------------------EEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEEeCCc------------------------EEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 4579999998643 33334455667777888888888877654
No 29
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=24.12 E-value=24 Score=24.02 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=33.8
Q ss_pred CCCCccCCCcc--cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHh
Q psy14432 95 SGPGGQHVNSV--STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKA 171 (189)
Q Consensus 95 SGPGGQnVNKv--~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a 171 (189)
=|+||.++++. .|.+.|.++-+. + =..++.+.|+.. ..+.+.|.+.+.+++.+.
T Consensus 22 IGkgG~~Ik~I~~~tga~I~i~~~~----~--------------~~~~~~v~I~G~-----~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 22 IGKGGQRIKQIRHESGASIKIDEPL----E--------------GSEDRIITITGT-----QDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp TCGGGHHHHHHHHHHCCEEEECCTT----S--------------CSSEEEEEEEEC-----HHHHHHHHHHHHHHHHHH
T ss_pred ECCCchHHHHHHHHHCCEEEEcCCC----C--------------CCCceEEEEEeC-----HHHHHHHHHHHHHHHHhc
Confidence 59999999864 355555543210 0 012345677663 357788999998888765
No 30
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=24.10 E-value=17 Score=24.94 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=14.1
Q ss_pred EEEEEcCcccHHHHHHHHHHHHHHHHH
Q psy14432 143 LIIKSDRTRSQQLNLADAMTTLRNMIW 169 (189)
Q Consensus 143 LvI~s~~~RSQ~~Nr~~Al~kL~~~I~ 169 (189)
+.|..+ + .+.+.|.+.+.+++.
T Consensus 63 v~I~G~----~-~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 63 LRIIGD----P-YKVQQACEMVMDILR 84 (85)
T ss_dssp EEEEEC----H-HHHHHHHHHHHHHHT
T ss_pred EEEEeC----H-HHHHHHHHHHHHHhc
Confidence 777762 2 356677777777664
No 31
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=23.49 E-value=90 Score=22.88 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=26.4
Q ss_pred cccceEEEEEecCCCCccCHHHHHHHHHHhccc
Q psy14432 104 SVSTKVDIRFKVNAANWLNEDVKKQLIELNKNR 136 (189)
Q Consensus 104 Kv~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~r 136 (189)
+-+=-|++.+.+|...||++.+++.|.+.+..+
T Consensus 67 ~GDL~V~~~V~~P~~~~ls~~q~~~l~~l~~~~ 99 (121)
T 1xao_A 67 YGNLIIKFTIKFPENHFTSEENLKKLEEILPPR 99 (121)
T ss_dssp CCCEEEEEEEECCCTTCSCHHHHHHHHHHSCCC
T ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHcccc
Confidence 356667888888988899999999998887644
No 32
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ...
Probab=22.26 E-value=89 Score=26.94 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=28.7
Q ss_pred CCCcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCC
Q psy14432 79 RFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAA 118 (189)
Q Consensus 79 ~~~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~ 118 (189)
.+++.+.+- =.++||+|--.|=|.|....|.|+ ||++
T Consensus 142 NIE~~pG~G-g~laRsAGt~A~ii~k~~~~~~vr--LPSG 178 (271)
T 3r8s_C 142 NVEMKPGKG-GQLARSAGTYVQIVARDGAYVTLR--LRSG 178 (271)
T ss_dssp SCCSSTTTC-CCSCCSTTCCEEEEECSTTEEEEE--CTTS
T ss_pred EEEecCCCC-ceEEEeCCCeEEEEEecCCEEEEE--CCCC
Confidence 455544443 268999999999999988888887 8876
No 33
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=22.14 E-value=26 Score=24.27 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=19.3
Q ss_pred CceEEEEEcCcccHHHHHHHHHHHHHHHHHHh
Q psy14432 140 DGYLIIKSDRTRSQQLNLADAMTTLRNMIWKA 171 (189)
Q Consensus 140 ~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a 171 (189)
++.+.|+.. ..+.+.|.+.+.++|.+.
T Consensus 58 ~~~v~I~G~-----~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 58 DRIITITGT-----QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp EEEEEEEEE-----HHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEcC-----HHHHHHHHHHHHHHHHhh
Confidence 345666653 357788999999988775
No 34
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=21.60 E-value=25 Score=23.50 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=30.3
Q ss_pred CCCccCCCcc--cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHH
Q psy14432 96 GPGGQHVNSV--STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIW 169 (189)
Q Consensus 96 GPGGQnVNKv--~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~ 169 (189)
|+||.+++.- .|.+.|.++-+. + -..++.+.|... ..+.+.|.+.+.++|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~----~--------------~~~~~~v~I~G~-----~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 21 GRQGAKINEIRQMSGAQIKIANPV----E--------------GSTDRQVTITGS-----AASISLAQYLINVRLS 73 (76)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCC----T--------------TCSEEEEEEEEC-----HHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHCCEEEEcCCC----C--------------CCCeEEEEEEeC-----HHHHHHHHHHHHHHHH
Confidence 8999998863 345555433210 0 123455777653 4566778888777764
No 35
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=21.31 E-value=54 Score=24.35 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=33.4
Q ss_pred CCCCccCCCcc--cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432 95 SGPGGQHVNSV--STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA 172 (189)
Q Consensus 95 SGPGGQnVNKv--~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~ 172 (189)
=|+||.+++.. .|.|.|.+.-... -..++.+.|... ..+.+.|.+.+.++|.++.
T Consensus 106 IGk~G~~I~~i~~~tg~~I~i~~~~~------------------~~~~~~v~I~G~-----~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 106 IGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP-----PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp HCSSSHHHHHHHHHTCCEEEECCCCT------------------TSSEEEEEEESC-----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHhHHHHHHHHCCeEEEeCCCC------------------CCCcEEEEEEcC-----HHHHHHHHHHHHHHHhhhh
Confidence 48888887753 3455555432110 012345666653 3478899999999988764
No 36
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=21.21 E-value=39 Score=25.26 Aligned_cols=52 Identities=10% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCCccCCCcc--cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHhh
Q psy14432 96 GPGGQHVNSV--STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAA 172 (189)
Q Consensus 96 GPGGQnVNKv--~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~ 172 (189)
|+||.++++. .|.+.+.|+-.. ..+..+.|... ..+.+.|...+.+.+.+..
T Consensus 21 GkgG~~Ik~i~~~tg~~I~i~~~~--------------------~~~r~v~I~G~-----~~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 21 GKKGESVKKMREESGARINISEGN--------------------CPERIITLAGP-----TNAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CGGGHHHHHHHHHHCSEEEEECCT--------------------TTEEEEEEEEE-----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHCCEEEEcCCC--------------------CCceEEEEEeC-----HHHHHHHHHHHHHHHHhhc
Confidence 8999999875 344555443211 11224666654 4678889888888887753
No 37
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=20.80 E-value=95 Score=26.85 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=29.1
Q ss_pred CCCcCCCCeEEEEeccCCCCccCCCcccceEEEEEecCCC
Q psy14432 79 RFSYITEELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAA 118 (189)
Q Consensus 79 ~~~i~~~~l~i~fsRSSGPGGQnVNKv~SkV~Lrfhl~s~ 118 (189)
.+++.+.+- =.|+||+|--.|=|.+....|.|+ ||++
T Consensus 144 NIE~~pG~G-g~laRsAGt~A~ii~k~~~~~~vr--LPSG 180 (276)
T 3v2d_D 144 AVELEPKKG-AKLARAAGTSAQIQGREGDYVILR--LPSG 180 (276)
T ss_dssp SEESSTTSC-EEESCSTTCCEEEEEEETTEEEEE--CTTS
T ss_pred EEEecCCCC-ceEEEeCCCeEEEEEecCCEEEEE--CCCC
Confidence 344444443 379999999999999998899987 8876
No 38
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=20.16 E-value=2.2e+02 Score=19.53 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=20.8
Q ss_pred eEEEEEcCcccHHHHHHHHHHHHHHHHHHhhCCC
Q psy14432 142 YLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPA 175 (189)
Q Consensus 142 ~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a~~~p 175 (189)
.+.|... ..+.+.|.+.+.++|.+...-|
T Consensus 61 ~v~I~G~-----~e~v~~A~~~I~~~i~~~~~~p 89 (92)
T 1x4n_A 61 SCMLTGT-----PESVQSAKRLLDQIVEKGRSGP 89 (92)
T ss_dssp EEEEEEC-----HHHHHHHHHHHHHHHHHTTCCS
T ss_pred EEEEEeC-----HHHHHHHHHHHHHHHHhcccCC
Confidence 4666543 3578889999999998875433
No 39
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=20.05 E-value=34 Score=23.19 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=31.5
Q ss_pred CCCCccCCCcc--cceEEEEEecCCCCccCHHHHHHHHHHhcccccCCceEEEEEcCcccHHHHHHHHHHHHHHHHHHh
Q psy14432 95 SGPGGQHVNSV--STKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLIIKSDRTRSQQLNLADAMTTLRNMIWKA 171 (189)
Q Consensus 95 SGPGGQnVNKv--~SkV~Lrfhl~s~~wLp~~~r~~L~~~~~~ri~k~G~LvI~s~~~RSQ~~Nr~~Al~kL~~~I~~a 171 (189)
=|+||.+++.. .|.+.|.++-+.. -+.++.+.|+.. . .+.+.|.+.+.+++.+.
T Consensus 21 IGkgG~~Ik~I~~~sga~I~i~~~~~------------------~~~~r~v~I~G~----~-~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 21 IGRQGANINEIRQMSGAQIKIANPVE------------------GSSGRQVTITGS----A-ASISLAQYLINARLSSE 76 (82)
T ss_dssp HCGGGHHHHHHHHHHCCEEEECCCCT------------------TCSEEEEEEEEC----H-HHHHHHHHHHHHHTC--
T ss_pred eCCCchhHHHHHHHhCCEEEEecCCC------------------CCCceEEEEEcC----H-HHHHHHHHHHHHHHHhh
Confidence 39999999874 3555555432100 023445777654 2 56777888888777554
Done!