RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14432
         (189 letters)



>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 112

 Score =  104 bits (260), Expect = 5e-30
 Identities = 41/96 (42%), Positives = 69/96 (71%), Gaps = 1/96 (1%)

Query: 81  SYITE-ELDITYSRSSGPGGQHVNSVSTKVDIRFKVNAANWLNEDVKKQLIELNKNRLNK 139
           SYI    L I+Y RSSGPGGQ+VN V++K ++RF + +A+W+ E V++++   +KN++NK
Sbjct: 15  SYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINK 74

Query: 140 DGYLIIKSDRTRSQQLNLADAMTTLRNMIWKAAKPA 175
            G L++ S+ +R Q  NLA+ +  +R+MI +A+ P+
Sbjct: 75  AGELVLTSESSRYQFRNLAECLQKIRDMIAEASGPS 110


>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase
           CheR, C-terminal domain {Salmonella typhimurium [TaxId:
           90371]}
          Length = 193

 Score = 27.1 bits (59), Expect = 1.3
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 107 TKVDIRFKVNAANWLNEDVKKQLIELNKNRLNKDGYLII 145
              D  F  N   + ++  ++ ++      L  DG L  
Sbjct: 131 GPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 169


>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
           {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 27.0 bits (59), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 86  ELDITYSRSSGPGGQHVNSVSTKVDIRFK 114
           +L I   RSSG GGQHVN+  + + I   
Sbjct: 211 DLRIDTFRSSGAGGQHVNTTDSAIRITHL 239


>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score = 24.9 bits (53), Expect = 8.4
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 127 KQLIELNKNRLNKDGYLI----IKSDRTRSQQLNLADAMTTLRNMI---WKAAKPAPQIS 179
           + L +L       DG+ +    + +         LA      +N I   W        + 
Sbjct: 25  RNLRQLETQ----DGFGLTLLHVIASTNLPLSTRLA-GALFFKNFIKRKWVDENGNHLLP 79

Query: 180 EDTIDRIR 187
            + ++ I+
Sbjct: 80  ANNVELIK 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 673,544
Number of extensions: 29894
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 6
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)