Query psy14433
Match_columns 144
No_of_seqs 66 out of 68
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 19:44:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06553 BNIP3: BNIP3; InterP 100.0 6.6E-51 1.4E-55 329.9 -0.1 125 6-130 70-196 (197)
2 COG3763 Uncharacterized protei 41.1 7.9 0.00017 27.9 -0.3 23 102-124 7-29 (71)
3 PF15054 DUF4535: Domain of un 39.0 4.9 0.00011 26.5 -1.5 18 106-123 3-20 (46)
4 cd06418 GH25_BacA-like BacA is 37.8 20 0.00044 29.2 1.6 24 51-74 165-192 (212)
5 KOG4481|consensus 36.9 13 0.00028 31.1 0.3 26 50-75 71-107 (194)
6 PF07099 DUF1361: Protein of u 35.8 10 0.00022 29.8 -0.4 14 110-123 114-127 (168)
7 PF03672 UPF0154: Uncharacteri 34.8 8.4 0.00018 27.1 -0.9 20 105-124 3-22 (64)
8 PRK01844 hypothetical protein; 33.5 12 0.00027 26.9 -0.3 22 103-124 8-29 (72)
9 KOG4452|consensus 28.8 36 0.00078 24.9 1.5 23 93-115 46-68 (79)
10 PF10606 GluR_Homer-bdg: Homer 27.8 20 0.00043 24.5 0.0 21 4-26 8-28 (51)
11 PF07271 Cytadhesin_P30: Cytad 26.4 30 0.00064 30.5 0.8 20 104-123 79-98 (279)
12 PF11782 DUF3319: Protein of u 24.3 14 0.0003 27.5 -1.4 39 31-72 20-58 (88)
13 PHA00727 hypothetical protein 23.2 53 0.0012 28.5 1.7 20 104-123 217-236 (278)
14 PF11382 DUF3186: Protein of u 21.7 36 0.00079 29.1 0.4 16 106-121 11-26 (308)
15 PF13042 DUF3902: Protein of u 21.4 31 0.00067 28.3 -0.0 10 49-58 27-36 (161)
16 PRK00523 hypothetical protein; 21.4 28 0.00061 25.1 -0.3 19 106-124 12-30 (72)
17 PRK11677 hypothetical protein; 20.9 30 0.00064 27.1 -0.2 19 105-123 6-24 (134)
No 1
>PF06553 BNIP3: BNIP3; InterPro: IPR010548 This family consists of several mammalian specific BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 or BNIP3 sequences. BNIP3 belongs to the Bcl-2 homology 3 (BH3)-only family, a Bcl-2-related family possessing an atypical Bcl-2 homology 3 (BH3) domain, which regulates PCD from mitochondrial sites by selective Bcl-2/Bcl-XL interactions. BNIP3 family members contain a C-terminal transmembrane domain that is required for their mitochondrial localisation, homodimerisation, as well as regulation of their pro-apoptotic activities. BNIP3-mediated apoptosis has been reported to be independent of caspase activation and cytochrome c release and is characterised by early plasma membrane and mitochondrial damage, prior to the appearance of chromatin condensation or DNA fragmentation [].; GO: 0043065 positive regulation of apoptosis, 0005740 mitochondrial envelope, 0016021 integral to membrane; PDB: 2KA1_B 2KA2_A 2J5D_A.
Probab=100.00 E-value=6.6e-51 Score=329.89 Aligned_cols=125 Identities=35% Similarity=0.621 Sum_probs=35.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCcccccccceeeeeeehhhhhhcCCCCCcceeccCCCCCCCCCCceeeecC-CCCccccee
Q psy14433 6 DLGNSFSPKSPPNSPNTELSTEDDHLKGVYINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWKFRHP-KSKSYSMRY 84 (144)
Q Consensus 6 ~~~~~~SPksppnSp~~E~~~~~~eL~~vyiny~~~~~~~~~lkKn~DWVwDWSSRPEniPPKef~frhP-~~~slSmR~ 84 (144)
.++|+.+|++|++++|+||..+.++.++||+||.........-.||+||||||||||||+|||||+|+|| ++++||||+
T Consensus 70 ~dSP~~s~~p~~~~~~~~~~~~~~~~~~~~~qsee~~~e~~~~~k~~DWvwDWSSRPEniPPKef~f~hPkr~~~lS~r~ 149 (197)
T PF06553_consen 70 CDSPPRSPSPPQNSPQIEFDVEMDESRDVSSQSEEDVGEREKEVKNADWVWDWSSRPENIPPKEFHFKHPKRSVSLSMRK 149 (197)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCcCCCccccccccCCCCccchhhccchhhhhcccccHHHHHhccCcccCCCcceEEECCCCCCCccccc
Confidence 4677778889999999999887799999999999987665532389999999999999999999999999 779999999
Q ss_pred eec-cCCcccchhhhhhhhHHHHHHHHHhhceeeeeecccchhhhhh
Q psy14433 85 AKV-GKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLIASNV 130 (144)
Q Consensus 85 s~v-~K~glFS~e~L~~flps~llShlL~~GlGiyIGKR~~l~~~~~ 130 (144)
++| ||+||||+|||++||||||+|||||+|||||||||++..++..
T Consensus 150 t~v~k~~glfS~e~l~~flpslllS~lL~~GlGiyIgkRl~t~s~st 196 (197)
T PF06553_consen 150 TRVMKKGGLFSAEFLKVFLPSLLLSHLLGLGLGIYIGKRLATPSAST 196 (197)
T ss_dssp SS-----SSSTHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cccccccccccHHHHHHHhHHHHHHHHHhcccEEEEecccccCcCCC
Confidence 999 7779999999999999999999999999999999999888754
No 2
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.13 E-value=7.9 Score=27.91 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhhceeeeeecccc
Q psy14433 102 FVTNIISILLGTGVGMWLSRRGM 124 (144)
Q Consensus 102 lps~llShlL~~GlGiyIGKR~~ 124 (144)
+.-.+++.+.|+..|+||.||.+
T Consensus 7 il~ivl~ll~G~~~G~fiark~~ 29 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIARKQM 29 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788889999999988874
No 3
>PF15054 DUF4535: Domain of unknown function (DUF4535)
Probab=38.99 E-value=4.9 Score=26.53 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=13.7
Q ss_pred HHHHHHhhceeeeeeccc
Q psy14433 106 IISILLGTGVGMWLSRRG 123 (144)
Q Consensus 106 llShlL~~GlGiyIGKR~ 123 (144)
++|.++|+..||||...-
T Consensus 3 ~fsF~~G~~~GiY~AQNY 20 (46)
T PF15054_consen 3 LFSFGAGTYTGIYVAQNY 20 (46)
T ss_pred eEEEeeccEEEEEeeecc
Confidence 356788999999986543
No 4
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=37.78 E-value=20 Score=29.15 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.1
Q ss_pred CCcceeccCCCC----CCCCCCceeeec
Q psy14433 51 STDWIWDWSSRP----DQAPPKDWKFRH 74 (144)
Q Consensus 51 n~DWVwDWSSRP----EniPPKef~frh 74 (144)
..-|+.|||+.+ +..+|+.|.|..
T Consensus 165 ~~~w~a~~s~g~s~n~g~~~~~~Wa~~q 192 (212)
T cd06418 165 VVSFVADMSTGFSGNLGYPLPKDWAFDQ 192 (212)
T ss_pred eeEEEecCCCCCcCCCCCCccccCCccc
Confidence 457999999987 577899999974
No 5
>KOG4481|consensus
Probab=36.86 E-value=13 Score=31.15 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCCcceeccCCC----------C-CCCCCCceeeecC
Q psy14433 50 KSTDWIWDWSSR----------P-DQAPPKDWKFRHP 75 (144)
Q Consensus 50 Kn~DWVwDWSSR----------P-EniPPKef~frhP 75 (144)
++.|-|..|-++ | |+-+|++|+|--|
T Consensus 71 ~SkDpV~r~q~kkaaet~q~~fp~e~r~p~~~~f~~~ 107 (194)
T KOG4481|consen 71 DSKDPVSRVQVKKAAETRQEEFPKEFRLPKDYHFDEI 107 (194)
T ss_pred cCCCchhhhhhccccchhcccchhhcCCcccccCCCc
Confidence 578999999999 5 7789999999875
No 6
>PF07099 DUF1361: Protein of unknown function (DUF1361); InterPro: IPR009793 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.
Probab=35.77 E-value=10 Score=29.80 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=11.0
Q ss_pred HHhhceeeeeeccc
Q psy14433 110 LLGTGVGMWLSRRG 123 (144)
Q Consensus 110 lL~~GlGiyIGKR~ 123 (144)
.+-.|+||||||-+
T Consensus 114 ~~Lss~GIYlGRfl 127 (168)
T PF07099_consen 114 SFLSSFGIYLGRFL 127 (168)
T ss_pred HHHHHHHHHHHhhc
Confidence 44568999999965
No 7
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=34.76 E-value=8.4 Score=27.05 Aligned_cols=20 Identities=25% Similarity=0.715 Sum_probs=16.1
Q ss_pred HHHHHHHhhceeeeeecccc
Q psy14433 105 NIISILLGTGVGMWLSRRGM 124 (144)
Q Consensus 105 ~llShlL~~GlGiyIGKR~~ 124 (144)
.++..++|+.+|+|++|+.+
T Consensus 3 iilali~G~~~Gff~ar~~~ 22 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYM 22 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999998863
No 8
>PRK01844 hypothetical protein; Provisional
Probab=33.48 E-value=12 Score=26.86 Aligned_cols=22 Identities=18% Similarity=0.685 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhceeeeeecccc
Q psy14433 103 VTNIISILLGTGVGMWLSRRGM 124 (144)
Q Consensus 103 ps~llShlL~~GlGiyIGKR~~ 124 (144)
.-.++..++|+.+|+||.|+.+
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~ 29 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999998863
No 9
>KOG4452|consensus
Probab=28.79 E-value=36 Score=24.89 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=18.9
Q ss_pred cchhhhhhhhHHHHHHHHHhhce
Q psy14433 93 FSKEVMYTLFVTNIISILLGTGV 115 (144)
Q Consensus 93 FS~e~L~~flps~llShlL~~Gl 115 (144)
.+++.+|-++.++..|..+|+|.
T Consensus 46 y~r~l~KELlIsl~aSvFlGFG~ 68 (79)
T KOG4452|consen 46 YNRNLLKELLISLTASVFLGFGS 68 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhH
Confidence 35678888999999998888885
No 10
>PF10606 GluR_Homer-bdg: Homer-binding domain of metabotropic glutamate receptor ; InterPro: IPR019588 This entry represents the proline-rich region of metabotropic glutamate receptor proteins that bind Homer-related synaptic proteins. Metabotropic glutamate receptors function as receptors for glutamate. The activity of this receptor is mediated by a G-protein that activates a phosphatidylinositol-calcium second messenger system. The Homer proteins form a physical tether linking mGluRs with the inositol trisphosphate receptors (IP3R) that appears to be due to the proline-rich Homer ligand (PPXXFr). Activation of PI turnover triggers intracellular calcium release []. Metabotropic glutamate receptor (MGluR) function is altered in the mouse model of human Fragile X syndrome mental retardation, a disorder caused by loss of function mutations in the Fragile X mental retardation gene Fmr1. Homer 3 (and to a lesser extent Homer 1b/c) has been shown to form a multimeric complex with mGlu1a and the IP3 receptor, indicating that Homers may play a role in the localisation of receptors to their signalling partners []. ; PDB: 1DDV_B.
Probab=27.80 E-value=20 Score=24.46 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCc
Q psy14433 4 FRDLGNSFSPKSPPNSPNTELST 26 (144)
Q Consensus 4 ~r~~~~~~SPksppnSp~~E~~~ 26 (144)
||| .-.|.-++++||.+|..-
T Consensus 8 FRD--sv~sg~s~~~SPvsEs~l 28 (51)
T PF10606_consen 8 FRD--SVCSGSSSPSSPVSESML 28 (51)
T ss_dssp -----------------------
T ss_pred ccc--ccCCCCCCCCCccccccc
Confidence 777 556777888999999543
No 11
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=26.44 E-value=30 Score=30.52 Aligned_cols=20 Identities=20% Similarity=0.482 Sum_probs=15.8
Q ss_pred HHHHHHHHhhceeeeeeccc
Q psy14433 104 TNIISILLGTGVGMWLSRRG 123 (144)
Q Consensus 104 s~llShlL~~GlGiyIGKR~ 123 (144)
-+++..|||+|||+-|-||-
T Consensus 79 ~~~v~liLgl~ig~p~~krk 98 (279)
T PF07271_consen 79 LLAVALILGLAIGIPIYKRK 98 (279)
T ss_pred HHHHHHHHHHhhcchhhhhh
Confidence 34567899999999888764
No 12
>PF11782 DUF3319: Protein of unknown function (DUF3319); InterPro: IPR021753 This is a family of short bacterial proteins, a few of which are annotated as being minor tail protein. Otherwise the function is unknown.
Probab=24.30 E-value=14 Score=27.55 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=29.4
Q ss_pred ccceeeeeeehhhhhhcCCCCCcceeccCCCCCCCCCCceee
Q psy14433 31 LKGVYINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWKF 72 (144)
Q Consensus 31 L~~vyiny~~~~~~~~~lkKn~DWVwDWSSRPEniPPKef~f 72 (144)
.=+|-|.=....|.+..++|+.||--|=.|= |+|+||-=
T Consensus 20 ~Wk~~Ik~~~~~GsL~~vKksIdww~dt~si---I~P~efss 58 (88)
T PF11782_consen 20 IWKVTIKNHVLSGSLFEVKKSIDWWCDTGSI---IDPKEFSS 58 (88)
T ss_pred eeEEEECCeEEeeEHHHHHHHHHHHHhcccc---cCchhhcc
Confidence 3445565556667788889999998888765 99999854
No 13
>PHA00727 hypothetical protein
Probab=23.20 E-value=53 Score=28.51 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=15.3
Q ss_pred HHHHHHHHhhceeeeeeccc
Q psy14433 104 TNIISILLGTGVGMWLSRRG 123 (144)
Q Consensus 104 s~llShlL~~GlGiyIGKR~ 123 (144)
-+++--|+|+|+|+.||=-+
T Consensus 217 mliig~imgigigvaigfgi 236 (278)
T PHA00727 217 MLIIGAIMGIGIGVAIGFGI 236 (278)
T ss_pred HHHHHHHHhcccceeeeecc
Confidence 35667789999999998544
No 14
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=21.69 E-value=36 Score=29.12 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=10.2
Q ss_pred HHHHHHhhceeeeeec
Q psy14433 106 IISILLGTGVGMWLSR 121 (144)
Q Consensus 106 llShlL~~GlGiyIGK 121 (144)
|.+-.||+|+||.||=
T Consensus 11 l~aVFlALavGI~lG~ 26 (308)
T PF11382_consen 11 LAAVFLALAVGIVLGS 26 (308)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4455667777777764
No 15
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=21.39 E-value=31 Score=28.28 Aligned_cols=10 Identities=40% Similarity=1.069 Sum_probs=9.2
Q ss_pred CCCCcceecc
Q psy14433 49 DKSTDWIWDW 58 (144)
Q Consensus 49 kKn~DWVwDW 58 (144)
+.+.||+|+|
T Consensus 27 ~g~~dwil~w 36 (161)
T PF13042_consen 27 MGGGDWILSW 36 (161)
T ss_pred cCCCcchHHH
Confidence 7789999999
No 16
>PRK00523 hypothetical protein; Provisional
Probab=21.38 E-value=28 Score=25.08 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=14.9
Q ss_pred HHHHHHhhceeeeeecccc
Q psy14433 106 IISILLGTGVGMWLSRRGM 124 (144)
Q Consensus 106 llShlL~~GlGiyIGKR~~ 124 (144)
++-.++|+.+|+||.|+.+
T Consensus 12 i~~li~G~~~Gffiark~~ 30 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKKMF 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4447889999999998863
No 17
>PRK11677 hypothetical protein; Provisional
Probab=20.88 E-value=30 Score=27.06 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.1
Q ss_pred HHHHHHHhhceeeeeeccc
Q psy14433 105 NIISILLGTGVGMWLSRRG 123 (144)
Q Consensus 105 ~llShlL~~GlGiyIGKR~ 123 (144)
.++..|+|+.+|+.|+|-+
T Consensus 6 a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4577888999999988854
Done!