Query psy14433
Match_columns 144
No_of_seqs 66 out of 68
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 19:45:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j5d_A BNIP3 TM, BCL2/adenovir 99.7 3.3E-18 1.1E-22 111.3 0.4 42 83-124 1-43 (45)
2 1iij_A ERBB-2 receptor protein 43.5 4.6 0.00016 24.5 -0.1 19 104-122 16-34 (35)
3 2ls4_A High affinity copper up 37.3 10 0.00035 21.6 0.0 15 105-119 5-19 (26)
4 4fd7_A Putative arylalkylamine 26.7 26 0.00087 25.7 1.5 30 57-87 2-38 (238)
5 2riv_B Thyroxine-binding globu 22.4 27 0.00092 20.7 0.8 15 59-75 1-15 (40)
6 2c2a_A Sensor histidine kinase 21.5 8.3 0.00028 28.2 -2.0 14 111-124 209-222 (258)
7 3glw_Z Dynein intermediate cha 21.2 27 0.00094 20.4 0.6 11 61-71 7-17 (28)
8 2jwa_A Receptor tyrosine-prote 20.9 17 0.00057 23.0 -0.4 21 103-123 19-39 (44)
9 2ajg_A Leucyl-tRNA synthetase; 20.6 52 0.0018 24.9 2.2 37 32-76 11-47 (196)
10 4fpp_A Phosphotransferase; fou 20.4 8.7 0.0003 28.9 -2.2 14 111-124 210-223 (247)
No 1
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=99.68 E-value=3.3e-18 Score=111.29 Aligned_cols=42 Identities=31% Similarity=0.554 Sum_probs=40.2
Q ss_pred eeeec-cCCcccchhhhhhhhHHHHHHHHHhhceeeeeecccc
Q psy14433 83 RYAKV-GKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGM 124 (144)
Q Consensus 83 R~s~v-~K~glFS~e~L~~flps~llShlL~~GlGiyIGKR~~ 124 (144)
||+++ ||+|+||+|||++|+|++++||+|++|+|||||||++
T Consensus 1 r~s~~mKkggi~sa~flk~~~psll~shiL~~GlgIyIGkRLs 43 (45)
T 2j5d_A 1 RNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLT 43 (45)
T ss_dssp CCCCCCCCCSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhcCCeeehHHHHHHhhHHHHHHHHHhcceEEeeeeec
Confidence 67888 8899999999999999999999999999999999986
No 2
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=43.49 E-value=4.6 Score=24.54 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=15.5
Q ss_pred HHHHHHHHhhceeeeeecc
Q psy14433 104 TNIISILLGTGVGMWLSRR 122 (144)
Q Consensus 104 s~llShlL~~GlGiyIGKR 122 (144)
.+++-.++++++|+||=||
T Consensus 16 glll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 16 GVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHTTTTTHHHHHC
T ss_pred HHHHHHHHHHHhheEEeec
Confidence 3777789999999998665
No 3
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=37.25 E-value=10 Score=21.55 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=11.9
Q ss_pred HHHHHHHhhceeeee
Q psy14433 105 NIISILLGTGVGMWL 119 (144)
Q Consensus 105 ~llShlL~~GlGiyI 119 (144)
++++-++|+++|.++
T Consensus 5 l~iavvlGa~~Gyf~ 19 (26)
T 2ls4_A 5 LCIAVAAGAGTGYFL 19 (26)
Confidence 356778899999887
No 4
>4fd7_A Putative arylalkylamine N-acetyltransferase 7; GNAT, COA binding; 1.80A {Aedes aegypti}
Probab=26.68 E-value=26 Score=25.72 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=19.3
Q ss_pred ccCCCCCCCC-CCceee-ecC--CC---Ccccceeeec
Q psy14433 57 DWSSRPDQAP-PKDWKF-RHP--KS---KSYSMRYAKV 87 (144)
Q Consensus 57 DWSSRPEniP-PKef~f-rhP--~~---~slSmR~s~v 87 (144)
.| +||++.| |+.|.- +.. .. ..+.||....
T Consensus 2 ~~-~~~~~~p~p~~~~~~~~~~~~~~~~m~~~IR~~~~ 38 (238)
T 4fd7_A 2 KW-TRSVKVPFPSVWHRFQAKDLTSQQLVWYRVQDLPE 38 (238)
T ss_dssp CC-CCCTTSCSSCEEEEEEEECSSSSCEEEEEEEECCG
T ss_pred Cc-cCCCCCCCCceeEEEEeccCCCCccceEEEEECCH
Confidence 46 8999999 987764 332 11 1577777443
No 5
>2riv_B Thyroxine-binding globulin; TBG, serpin, cleaved, mutation, glycoprotein, secreted, signaling protein; 1.50A {Homo sapiens} PDB: 2riw_B* 2xn3_B*
Probab=22.44 E-value=27 Score=20.67 Aligned_cols=15 Identities=7% Similarity=-0.177 Sum_probs=8.1
Q ss_pred CCCCCCCCCCceeeecC
Q psy14433 59 SSRPDQAPPKDWKFRHP 75 (144)
Q Consensus 59 SSRPEniPPKef~frhP 75 (144)
|+|+. +|.+|++.||
T Consensus 1 ~~r~~--~p~~f~~drP 15 (40)
T 2riv_B 1 SENTF--LHPIIQIDRS 15 (40)
T ss_dssp --------CCEEECCBC
T ss_pred CCCCC--CCCEEEecCC
Confidence 56654 6778999999
No 6
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=21.55 E-value=8.3 Score=28.22 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=10.6
Q ss_pred Hhhceeeeeecccc
Q psy14433 111 LGTGVGMWLSRRGM 124 (144)
Q Consensus 111 L~~GlGiyIGKR~~ 124 (144)
-|.|+|++|+|+++
T Consensus 209 ~G~GLGL~i~~~iv 222 (258)
T 2c2a_A 209 PGTGLGLAITKEIV 222 (258)
T ss_dssp --CCCTHHHHHHHH
T ss_pred CCcchHHHHHHHHH
Confidence 48999999999864
No 7
>3glw_Z Dynein intermediate chain; LC8, tctex, tctex-1, IC, dynein chain, entropy, allostery, chelate effect, multivalent., microtubule; 3.15A {Drosophila melanogaster}
Probab=21.18 E-value=27 Score=20.37 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=7.9
Q ss_pred CCCCCCCCcee
Q psy14433 61 RPDQAPPKDWK 71 (144)
Q Consensus 61 RPEniPPKef~ 71 (144)
-+-|+||||=.
T Consensus 7 ~~tniPPKE~v 17 (28)
T 3glw_Z 7 QTQTTPPKETL 17 (28)
T ss_pred eeccCCCccee
Confidence 35689999743
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.91 E-value=17 Score=22.96 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhceeeeeeccc
Q psy14433 103 VTNIISILLGTGVGMWLSRRG 123 (144)
Q Consensus 103 ps~llShlL~~GlGiyIGKR~ 123 (144)
..+++..++++++++|+=||-
T Consensus 19 VGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 19 VGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhheehhh
Confidence 346677788999999986653
No 9
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=20.58 E-value=52 Score=24.88 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=29.7
Q ss_pred cceeeeeeehhhhhhcCCCCCcceeccCCCCCCCCCCceeeecCC
Q psy14433 32 KGVYINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWKFRHPK 76 (144)
Q Consensus 32 ~~vyiny~~~~~~~~~lkKn~DWVwDWSSRPEniPPKef~frhP~ 76 (144)
.++||.|... ...+-+-=|..|||-||-..+...||.
T Consensus 11 ~g~~v~F~~~--------~~~~~l~i~TTrP~TL~g~~avav~P~ 47 (196)
T 2ajg_A 11 EGVEITFNVN--------DYDNTLTVYTTRPDTFMGCTYLAVAAG 47 (196)
T ss_dssp CEEEEEEEBT--------TCSSEEEEEESCGGGGGGCCEEEECTT
T ss_pred ceEEEEEEeC--------CCCcEEEEEECChhhhcCccEEEECCC
Confidence 4778877652 123579999999999999999999993
No 10
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=20.42 E-value=8.7 Score=28.90 Aligned_cols=14 Identities=14% Similarity=-0.206 Sum_probs=11.5
Q ss_pred Hhhceeeeeecccc
Q psy14433 111 LGTGVGMWLSRRGM 124 (144)
Q Consensus 111 L~~GlGiyIGKR~~ 124 (144)
=|.|||+||+|+++
T Consensus 210 ~G~GLGLai~~~iv 223 (247)
T 4fpp_A 210 GGPWVQAAYLNALV 223 (247)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 38899999998864
Done!