Query psy14433
Match_columns 144
No_of_seqs 66 out of 68
Neff 3.1
Searched_HMMs 13730
Date Fri Aug 16 19:45:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14433.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14433hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ysra1 d.122.1.3 (A:299-446) 32.0 2.4 0.00018 28.7 -1.5 14 111-124 108-121 (148)
2 d1id0a_ d.122.1.3 (A:) Histidi 30.4 2.2 0.00016 28.9 -1.9 13 112-124 107-119 (146)
3 d2c2aa2 d.122.1.3 (A:321-481) 30.2 2.1 0.00016 29.2 -2.0 16 109-124 118-133 (161)
4 d1h3na2 b.51.1.1 (A:226-417) L 26.6 16 0.0012 25.5 2.2 36 32-75 3-38 (192)
5 d1i58a_ d.122.1.3 (A:) Histidi 24.3 2.9 0.00021 27.0 -2.1 15 110-124 149-163 (189)
6 d1bxda_ d.122.1.3 (A:) Histidi 23.2 4.8 0.00035 27.6 -1.2 13 112-124 112-124 (161)
7 d1r62a_ d.122.1.3 (A:) Nitroge 20.9 3.7 0.00027 27.7 -2.3 15 110-124 116-130 (156)
8 d1jm6a2 d.122.1.4 (A:1177-1366 18.3 4.7 0.00034 28.3 -2.3 15 110-124 139-153 (190)
9 d1gkza2 d.122.1.4 (A:186-378) 17.5 4.9 0.00036 27.5 -2.3 13 112-124 150-162 (193)
10 d1wkaa1 b.51.1.1 (A:195-337) V 17.5 30 0.0022 23.7 2.0 25 51-75 12-36 (143)
No 1
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=31.96 E-value=2.4 Score=28.70 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=9.0
Q ss_pred Hhhceeeeeecccc
Q psy14433 111 LGTGVGMWLSRRGM 124 (144)
Q Consensus 111 L~~GlGiyIGKR~~ 124 (144)
-|+|||++|+|+++
T Consensus 108 ~G~GLGL~i~~~iv 121 (148)
T d1ysra1 108 SGSGLGLALVAQQA 121 (148)
T ss_dssp ----CCCHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 48999999999875
No 2
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=30.43 E-value=2.2 Score=28.92 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=11.5
Q ss_pred hhceeeeeecccc
Q psy14433 112 GTGVGMWLSRRGM 124 (144)
Q Consensus 112 ~~GlGiyIGKR~~ 124 (144)
|+|||++|+|+++
T Consensus 107 G~GLGL~I~k~iv 119 (146)
T d1id0a_ 107 GQGVGLAVAREIT 119 (146)
T ss_dssp TCCSCHHHHHHHH
T ss_pred CeeHHHHHHHHHH
Confidence 7899999999874
No 3
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=30.20 E-value=2.1 Score=29.25 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=11.0
Q ss_pred HHHhhceeeeeecccc
Q psy14433 109 ILLGTGVGMWLSRRGM 124 (144)
Q Consensus 109 hlL~~GlGiyIGKR~~ 124 (144)
..-|+|||++|+|+++
T Consensus 118 ~~~G~GLGL~i~k~iv 133 (161)
T d2c2aa2 118 EVPGTGLGLAITKEIV 133 (161)
T ss_dssp ----CCCTHHHHHHHH
T ss_pred CCCcccHHHHHHHHHH
Confidence 4569999999999975
No 4
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}
Probab=26.57 E-value=16 Score=25.47 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=27.7
Q ss_pred cceeeeeeehhhhhhcCCCCCcceeccCCCCCCCCCCceeeecC
Q psy14433 32 KGVYINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWKFRHP 75 (144)
Q Consensus 32 ~~vyiny~~~~~~~~~lkKn~DWVwDWSSRPEniPPKef~frhP 75 (144)
+|+++.+-. ..+...+-=|..|||-||-..+...||
T Consensus 3 ~g~~V~F~v--------~~~~~~l~iwTTtPwTlpgn~avav~p 38 (192)
T d1h3na2 3 EGAEILFPV--------EGKEVRIPVFTTRPDTLFGATFLVLAP 38 (192)
T ss_dssp EEEEEEEEB--------TTSSCEEEEEESCGGGGGGCCEEEECT
T ss_pred ceEEEEEEe--------cCCCcEEEEEeCCcchhhhccEEEECC
Confidence 356765543 223357889999999999999999998
No 5
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=24.31 E-value=2.9 Score=26.99 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=12.1
Q ss_pred HHhhceeeeeecccc
Q psy14433 110 LLGTGVGMWLSRRGM 124 (144)
Q Consensus 110 lL~~GlGiyIGKR~~ 124 (144)
-=|.|||++|.|+.+
T Consensus 149 ~~G~GLGLai~k~iv 163 (189)
T d1i58a_ 149 VSGRGVGMDVVKNVV 163 (189)
T ss_dssp GGTCCCHHHHHHHHH
T ss_pred CCcCccCHHHHHHHH
Confidence 447899999999874
No 6
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}
Probab=23.19 E-value=4.8 Score=27.56 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=11.0
Q ss_pred hhceeeeeecccc
Q psy14433 112 GTGVGMWLSRRGM 124 (144)
Q Consensus 112 ~~GlGiyIGKR~~ 124 (144)
|+|||++|.|+++
T Consensus 112 g~GLGL~ivk~iv 124 (161)
T d1bxda_ 112 GTGLGLAIVQRIV 124 (161)
T ss_dssp CCSCCCCTTHHHH
T ss_pred CCCchHHHHHHHH
Confidence 5799999999864
No 7
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.85 E-value=3.7 Score=27.68 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=9.8
Q ss_pred HHhhceeeeeecccc
Q psy14433 110 LLGTGVGMWLSRRGM 124 (144)
Q Consensus 110 lL~~GlGiyIGKR~~ 124 (144)
--|+|+|++|+|+++
T Consensus 116 ~~G~GLGL~i~~~iv 130 (156)
T d1r62a_ 116 EGGTGLGLSIARNLI 130 (156)
T ss_dssp ----CHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHH
Confidence 359999999999874
No 8
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=18.30 E-value=4.7 Score=28.29 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=12.0
Q ss_pred HHhhceeeeeecccc
Q psy14433 110 LLGTGVGMWLSRRGM 124 (144)
Q Consensus 110 lL~~GlGiyIGKR~~ 124 (144)
+-|+|||++|+|+++
T Consensus 139 ~~G~GLGL~i~k~iv 153 (190)
T d1jm6a2 139 LAGFGYGLPISRLYA 153 (190)
T ss_dssp -CCSSCHHHHHHHHH
T ss_pred cCCCCccHHHHHHHH
Confidence 448999999999874
No 9
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.53 E-value=4.9 Score=27.53 Aligned_cols=13 Identities=38% Similarity=0.406 Sum_probs=11.5
Q ss_pred hhceeeeeecccc
Q psy14433 112 GTGVGMWLSRRGM 124 (144)
Q Consensus 112 ~~GlGiyIGKR~~ 124 (144)
|+|+|++|+|+++
T Consensus 150 G~GlGL~i~k~iv 162 (193)
T d1gkza2 150 GFGFGLPTSRAYA 162 (193)
T ss_dssp CSSCHHHHHHHHH
T ss_pred cCCcCHHHHHHHH
Confidence 8999999999874
No 10
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=17.51 E-value=30 Score=23.70 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=22.7
Q ss_pred CCcceeccCCCCCCCCCCceeeecC
Q psy14433 51 STDWIWDWSSRPDQAPPKDWKFRHP 75 (144)
Q Consensus 51 n~DWVwDWSSRPEniPPKef~frhP 75 (144)
+.+.|-=|..|||-||-..+...||
T Consensus 12 ~~~~i~i~TTrP~Tl~g~~avav~P 36 (143)
T d1wkaa1 12 GGGFIEIATVRPETVFADQAIAVHP 36 (143)
T ss_dssp TSCEEEEEESCGGGGGGCCEEEECT
T ss_pred CCCEEEEEECCcchhcCceEEEEec
Confidence 3568889999999999999999999
Done!