RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14433
         (144 letters)



>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 101

 Score = 26.5 bits (58), Expect = 0.64
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 14 KSPPNSPNTELSTEDDHLKGVYI---NFANKDELVANFDKSTDWIWDWSSRPDQAPPKDW 70
          KSP   P   LS E+   + V+        +   + +F  +   + D     D+   +  
Sbjct: 1  KSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 60

Query: 71 KFRH 74
             +
Sbjct: 61 GIAY 64


>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK
           {Escherichia coli [TaxId: 562]}
          Length = 170

 Score = 25.2 bits (54), Expect = 3.2
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 103 VTNIISILLGTGVGMWLSRRGMLI 126
           +T+++ I + TGVG  +     L+
Sbjct: 2   ITDMVFITVSTGVGGGVVSGCKLL 25


>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS
           (YggB), transmembrane region {Escherichia coli [TaxId:
           562]}
          Length = 86

 Score = 24.2 bits (53), Expect = 3.6
 Identities = 7/35 (20%), Positives = 18/35 (51%)

Query: 102 FVTNIISILLGTGVGMWLSRRGMLIASNVAKSKRM 136
           +  NI++ L    VG+ ++R      + +  S+++
Sbjct: 1   YAVNIVAALAIIIVGLIIARMISNAVNRLMISRKI 35


>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
           {Paracoccus denitrificans [TaxId: 266]}
          Length = 368

 Score = 24.9 bits (53), Expect = 5.2
 Identities = 6/48 (12%), Positives = 14/48 (29%)

Query: 10  SFSPKSPPNSPNTELSTEDDHLKGVYINFANKDELVANFDKSTDWIWD 57
           +F P +    P+    +    +  +    ++   L   F  S      
Sbjct: 105 TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS 152


>d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 23.6 bits (51), Expect = 6.0
 Identities = 5/26 (19%), Positives = 12/26 (46%)

Query: 72 FRHPKSKSYSMRYAKVGKNSLFSKEV 97
          F+ P   ++ + Y     + +  +EV
Sbjct: 19 FKAPNKGTFQIVYKSRNNSHVNREEV 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.417 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 551,289
Number of extensions: 22684
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 6
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.7 bits)