BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14436
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
GY L + SVE++DP WT + PM+T+R G A+ N+ IY VGG D + LSS E
Sbjct: 167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEA 226
Query: 68 YNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPP 127
YN T++W + +MT+ R +G L+ L Y I G L + E +P
Sbjct: 227 YNIRTDSWTTVTSMTTPRCYVGATVLRGRL---------YAIAGYDGNSLLSSIECYDPI 277
Query: 128 HMYW 131
W
Sbjct: 278 IDSW 281
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
G+ + S+ER+DP +++W+ + M T R+ G V + VIY +GG D L+S EK
Sbjct: 120 GFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEK 179
Query: 68 YNPHTNTWLPIVAMTSRRSGLG 89
Y+PHT W + M ++RSG G
Sbjct: 180 YDPHTGHWTNVTPMATKRSGAG 201
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
SVE ++ + + WT + M+T R ++G V +YA+ G D + LSS E Y+P ++W
Sbjct: 223 SVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282
Query: 77 PIVAMTSRRSGLG 89
+ +M ++R G
Sbjct: 283 VVTSMGTQRCDAG 295
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 12/127 (9%)
Query: 8 GYRELQLQVSVERFDPKLNR---WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSS 64
GY SVE D + W ++APM+ RR G ++IY GG D S +S
Sbjct: 70 GYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTS 129
Query: 65 AEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEK 124
E+Y+P+ + W + M + R G G + + Y + G + + E+
Sbjct: 130 MERYDPNIDQWSMLGDMQTAREGAG---------LVVASGVIYCLGGYDGLNILNSVEKY 180
Query: 125 EPPHMYW 131
+P +W
Sbjct: 181 DPHTGHW 187
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 18 VERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYN---PHTNT 74
VE++DPK W+ + ++ +R+++ ++ IY +GG D LSS E +
Sbjct: 33 VEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92
Query: 75 WLPIVAMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYW 131
W + M RR G +L Y+ G R + E +P W
Sbjct: 93 WYSVAPMNVRRGLAGATTLG---------DMIYVSGGFDGSRRHTSMERYDPNIDQW 140
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF 46
GY L S+E +DP ++ W + M T+R G V
Sbjct: 261 GYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
SVER++P+ + W +APM TRR +G AV N ++YAVGG D + L+SAE Y P N W
Sbjct: 139 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR 198
Query: 77 PIVAMTSRRSGLG 89
I AM + RSG G
Sbjct: 199 MITAMNTIRSGAG 211
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 45/82 (54%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
GY SVER+D + WT +APM RR LG V IY +GG D L S E
Sbjct: 224 GYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVEC 283
Query: 68 YNPHTNTWLPIVAMTSRRSGLG 89
Y+P T+TW + MTS RSG+G
Sbjct: 284 YDPDTDTWSEVTRMTSGRSGVG 305
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
S E + P+ N W + M+T R G V +N IYA GG D +L+S E+Y+ T TW
Sbjct: 186 SAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWT 245
Query: 77 PIVAMTSRRSGLG 89
+ M RRS LG
Sbjct: 246 FVAPMKHRRSALG 258
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
+++ ++P N+W+ APMS R +G V + IYAVGG + +S E+Y P + W
Sbjct: 92 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH 151
Query: 77 PIVAMTSRRSGLGPGSLQLTL 97
+ M +RR G+G L L
Sbjct: 152 LVAPMLTRRIGVGVAVLNRLL 172
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 18 VERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDS----MELSSAEKYNPHTN 73
+E ++P W +A + R L V ++YAVGGR++S + S+ + YNP TN
Sbjct: 42 LEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 101
Query: 74 TWLPIVAMTSRRSGLGPGSLQ 94
W P M+ R+ +G G +
Sbjct: 102 QWSPCAPMSVPRNRIGVGVID 122
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 49 VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGL 88
+IY GG LS E YNP TWL + + RSGL
Sbjct: 27 LIYTAGGYF-RQSLSYLEAYNPSDGTWLRLADLQVPRSGL 65
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAV 45
GY SVE +DP + W+ + M++ R +G AV
Sbjct: 271 GYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 308
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
SVER++P+ + W +APM TRR +G AV N ++YAVGG D + L+SAE Y P N W
Sbjct: 138 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR 197
Query: 77 PIVAMTSRRSGLG 89
I AM + RSG G
Sbjct: 198 MITAMNTIRSGAG 210
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 45/82 (54%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
GY SVER+D + WT +APM RR LG V IY +GG D L S E
Sbjct: 223 GYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVEC 282
Query: 68 YNPHTNTWLPIVAMTSRRSGLG 89
Y+P T+TW + MTS RSG+G
Sbjct: 283 YDPDTDTWSEVTRMTSGRSGVG 304
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
S E + P+ N W + M+T R G V +N IYA GG D +L+S E+Y+ T TW
Sbjct: 185 SAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWT 244
Query: 77 PIVAMTSRRSGLG 89
+ M RRS LG
Sbjct: 245 FVAPMKHRRSALG 257
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
+++ ++P N+W+ APMS R +G V + IYAVGG + +S E+Y P + W
Sbjct: 91 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH 150
Query: 77 PIVAMTSRRSGLGPGSLQLTL 97
+ M +RR G+G L L
Sbjct: 151 LVAPMLTRRIGVGVAVLNRLL 171
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 18 VERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDS----MELSSAEKYNPHTN 73
+E ++P W +A + R L V ++YAVGGR++S + S+ + YNP TN
Sbjct: 41 LEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100
Query: 74 TWLPIVAMTSRRSGLGPGSLQ 94
W P M+ R+ +G G +
Sbjct: 101 QWSPCAPMSVPRNRIGVGVID 121
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 49 VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGL 88
+IY GG LS E YNP TWL + + RSGL
Sbjct: 26 LIYTAGGYF-RQSLSYLEAYNPSDGTWLRLADLQVPRSGL 64
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAV 45
GY SVE +DP + W+ + M++ R +G AV
Sbjct: 270 GYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
SVER++P+ + W +APM TRR +G AV N ++YAVGG D + L+SAE Y P N W
Sbjct: 132 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR 191
Query: 77 PIVAMTSRRSGLG 89
I M + RSG G
Sbjct: 192 MITPMNTIRSGAG 204
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 44/82 (53%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
GY SVER+D + WT +APM R LG V IY +GG D L S E
Sbjct: 217 GYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVEC 276
Query: 68 YNPHTNTWLPIVAMTSRRSGLG 89
Y+P ++TW + MTS RSG+G
Sbjct: 277 YDPDSDTWSEVTRMTSGRSGVG 298
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
S E + P+ N W + PM+T R G V +N IYA GG D +L+S E+Y+ T TW
Sbjct: 179 SAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWT 238
Query: 77 PIVAMTSRRSGLG 89
+ M RS LG
Sbjct: 239 FVAPMRHHRSALG 251
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
+++ ++P N+W+ A MS R +G V + IYAVGG + SS E+Y P + W
Sbjct: 85 ALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWH 144
Query: 77 PIVAMTSRRSGLGPGSLQLTL 97
+ M +RR G+G L L
Sbjct: 145 LVAPMLTRRIGVGVAVLNRLL 165
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 18 VERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDS----MELSSAEKYNPHTN 73
+E ++P W +A + R L V ++YAVGGR++S + S+ + YNP TN
Sbjct: 35 LEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 94
Query: 74 TWLPIVAMTSRRSGLGPGSLQ 94
W P +M+ R+ +G G +
Sbjct: 95 QWSPCASMSVPRNRIGVGVID 115
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 49 VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGL 88
+IY GG LS E YNP +WL + + RSGL
Sbjct: 20 LIYTAGGYF-RQSLSYLEAYNPSNGSWLRLADLQVPRSGL 58
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAV 45
GY SVE +DP + W+ + M++ R +G AV
Sbjct: 264 GYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAV 301
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
SVER++P+ + W +APM TRR +G AV N ++YAVGG D + L+SAE Y P N W
Sbjct: 131 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR 190
Query: 77 PIVAMTSRRSGLG 89
I M + RSG G
Sbjct: 191 MITPMNTIRSGAG 203
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 44/82 (53%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
GY SVER+D + WT +APM R LG V IY +GG D L S E
Sbjct: 216 GYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVEC 275
Query: 68 YNPHTNTWLPIVAMTSRRSGLG 89
Y+P ++TW + MTS RSG+G
Sbjct: 276 YDPDSDTWSEVTRMTSGRSGVG 297
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
S E + P+ N W + PM+T R G V +N IYA GG D +L+S E+Y+ T TW
Sbjct: 178 SAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWT 237
Query: 77 PIVAMTSRRSGLG 89
+ M RS LG
Sbjct: 238 FVAPMRHHRSALG 250
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
+++ ++P N+W+ A MS R +G V + IYAVGG + SS E+Y P + W
Sbjct: 84 ALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWH 143
Query: 77 PIVAMTSRRSGLGPGSLQLTL 97
+ M +RR G+G L L
Sbjct: 144 LVAPMLTRRIGVGVAVLNRLL 164
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 18 VERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDS----MELSSAEKYNPHTN 73
+E ++P W +A + R L V ++YAVGGR++S + S+ + YNP TN
Sbjct: 34 LEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 93
Query: 74 TWLPIVAMTSRRSGLGPGSLQ 94
W P +M+ R+ +G G +
Sbjct: 94 QWSPCASMSVPRNRIGVGVID 114
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 49 VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGL 88
+IY GG LS E YNP +WL + + RSGL
Sbjct: 19 LIYTAGGYF-RQSLSYLEAYNPSNGSWLRLADLQVPRSGL 57
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAV 45
GY SVE +DP + W+ + M++ R +G AV
Sbjct: 263 GYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAV 300
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
+V+ +DP ++WT++A M RR LG AV N ++YAVGG D S LSS E YN +N W
Sbjct: 78 TVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137
Query: 77 PIVAMTSRRS 86
+ M +RRS
Sbjct: 138 HVAPMNTRRS 147
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 13 QLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHT 72
Q +VE ++ N WT +A MSTRR G V NN++YAVGG D + S E Y+P T
Sbjct: 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTT 229
Query: 73 NTWLPIVAMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYW 131
N W + M R G ++ L Y++ GD + E P W
Sbjct: 230 NAWRQVADMNMCRRNAGVCAVNGLL---------YVVGGDDGSCNLASVEYYNPTTDKW 279
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSME--LSSAEKYNPHTNT 74
SVE ++ K N W +APM+TRR +G V ++YAVGG D + LS+ E YN TN
Sbjct: 125 SVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE 184
Query: 75 WLPIVAMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYW 131
W I M++RRSG G G L Y + G ++ + E +P W
Sbjct: 185 WTYIAEMSTRRSGAGVGVLN---------NLLYAVGGHDGPLVRKSVEVYDPTTNAW 232
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
SVE +DP N W +A M+ R++ G N ++Y VGG D S L+S E YNP T+ W
Sbjct: 221 SVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280
Query: 77 PIVA-MTSRRSGLG 89
+ + M++ RS G
Sbjct: 281 VVSSCMSTGRSYAG 294
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
SVE +D K RW +A + +RR G +++AVGG + S+ + + + Y+P + W
Sbjct: 31 SVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT 90
Query: 77 PIVAMTSRRSGLGPGSLQ 94
+ M RRS LG L
Sbjct: 91 SVANMRDRRSTLGAAVLN 108
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
SVER++P+ + W +AP TRR +G AV N ++YAVGG D + L+SAE Y P N W
Sbjct: 138 SVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR 197
Query: 77 PIVAMTSRRSGLG 89
I A + RSG G
Sbjct: 198 XITAXNTIRSGAG 210
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 43/82 (52%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
GY SVER+D + WT +AP RR LG V IY +GG D L S E
Sbjct: 223 GYDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDSVEC 282
Query: 68 YNPHTNTWLPIVAMTSRRSGLG 89
Y+P T+TW + TS RSG+G
Sbjct: 283 YDPDTDTWSEVTRXTSGRSGVG 304
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
S E + P+ N W + +T R G V +N IYA GG D +L+S E+Y+ T TW
Sbjct: 185 SAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWT 244
Query: 77 PIVAMTSRRSGLG 89
+ RRS LG
Sbjct: 245 FVAPXKHRRSALG 257
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
+++ ++P N+W+ AP S R +G V + IYAVGG + +S E+Y P + W
Sbjct: 91 ALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH 150
Query: 77 PIVAMTSRRSGLGPGSLQLTL 97
+ +RR G+G L L
Sbjct: 151 LVAPXLTRRIGVGVAVLNRLL 171
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 18 VERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDS----MELSSAEKYNPHTN 73
+E ++P W +A + R L V ++YAVGGR++S + S+ + YNP TN
Sbjct: 41 LEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPXTN 100
Query: 74 TWLPIVAMTSRRSGLGPGSLQ 94
W P + R+ +G G +
Sbjct: 101 QWSPCAPXSVPRNRIGVGVID 121
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 49 VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGL 88
+IY GG LS E YNP TWL + + RSGL
Sbjct: 26 LIYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGL 64
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 35/77 (45%)
Query: 21 FDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80
+DPK W +APM T R G V + I G D+ SSAE Y+ N W P A
Sbjct: 170 YDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA 229
Query: 81 MTSRRSGLGPGSLQLTL 97
RS L SL TL
Sbjct: 230 FPQERSSLSLVSLVGTL 246
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 5 FNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGR---DDSME 61
+N +E + +FD + W M P+ + R G N IY VGGR D
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 62 LSSAEKYNPHTNTW 75
L S Y+ + W
Sbjct: 116 LDSVMCYDRLSFKW 129
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGG----RDDSMELS 63
G + L S E + N+W R L +YA+GG +S EL
Sbjct: 204 GVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELV 263
Query: 64 SAE-----KYNPHTNTWLPIVAMTSRRSG 87
E +YN W ++ + +G
Sbjct: 264 PTELNDIWRYNEEEKKWEGVLREIAYAAG 292
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW- 75
S E +DP WT + PM RK+ G + I+AVGG++ L + E Y+ N W
Sbjct: 170 SCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229
Query: 76 ----LPIVAMTSRRSGLG 89
+P +T + + +G
Sbjct: 230 MVSPMPWKGVTVKCAAVG 247
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
+VE +D KLN W ++PM + + CA +++Y + G L +YN T+ W+
Sbjct: 217 NVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWV 276
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 19 ERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGG----RDDSMELSSAEKYNPHTNT 74
E +D + W M T+R G N +IY GG L+S E Y+P T T
Sbjct: 121 ECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180
Query: 75 WLPIVAMTSRRSGLG 89
W + M R G
Sbjct: 181 WTELCPMIEARKNHG 195
Score = 32.3 bits (72), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75
S F+PK WT + +R+ C ++NV+Y +GG + + YN ++W
Sbjct: 25 SCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGG-SQLFPIKRMDCYNVVKDSW 82
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%)
Query: 21 FDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80
++PK W +APM T R G A+ I GG + +S E ++ TN W +
Sbjct: 180 YNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE 239
Query: 81 MTSRRSGLGPGSLQLTL 97
RS + SL +L
Sbjct: 240 FPQERSSISLVSLAGSL 256
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGG----RDDSMELS 63
G E L SVE FD K N+W M R + +YA+GG + +S E +
Sbjct: 214 GVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFA 273
Query: 64 SAE-----KYNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSV 103
E KY W ++ SG + +L L L+ +
Sbjct: 274 PTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLNLFKLSKL 318
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 10 RELQLQVSVER---FDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGR-DDSMELSSA 65
++LQ + S++ +DP +W+ + + + N +IY +GG+ DD +
Sbjct: 118 KDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRV 177
Query: 66 EKYNPHTNTWLPIVAMTSRRSGLG 89
YNP W + M + RS G
Sbjct: 178 FIYNPKKGDWKDLAPMKTPRSMFG 201
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 14 LQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSME--LSSAEKYNPH 71
LQ + D + W + P+ + R G ++ IY V G+D E L S Y+P
Sbjct: 76 LQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPV 135
Query: 72 TNTW 75
W
Sbjct: 136 AAKW 139
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 24 KLNRWTAMAPM-STRRKHLGCAVFNNVIYAVGGRDDSME-----LSSAEKYNPHTNTWLP 77
K +WTA+A R A + +Y GG + E + KYNP TN+W+
Sbjct: 41 KDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVK 100
Query: 78 I 78
+
Sbjct: 101 L 101
>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 88
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 83 SRRSGLGPG-SLQLTLPTLTSVKFTYII-PGDPAERLKFTREEKE--PPH 128
SRR+ +G G S+ + + TLT + I P D ER+K EEKE PP
Sbjct: 2 SRRASVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ 51
>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBR|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 88
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 83 SRRSGLGPG-SLQLTLPTLTSVKFTYII-PGDPAERLKFTREEKE--PPH 128
SRR+ +G G S+ + + TLT + I P D ER+K EEKE PP
Sbjct: 2 SRRASVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ 51
>pdb|3PU5|A Chain A, The Crystal Structure Of A Putative Extracellular
Solute-Binding Protein From Bordetella Parapertussis
Length = 333
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 50 IYAVGGRDDSMELSSAEKYNPHTNTWL-----PIVAMTSRRSGLGPG 91
IY G D +++ E+ PH + P+V +TS +GPG
Sbjct: 166 IYGSGYGDIEASIATLERXKPHIFKFFTAFNDPVVLLTSGEGAIGPG 212
>pdb|1NOF|A Chain A, The First Crystallographic Structure Of A Xylanase From
Glycosyl Hydrolase Family 5: Implications For Catalysis
pdb|2Y24|A Chain A, Structural Basis For Substrate Recognition By Erwinia
Chrysanthemi Gh5 Glucuronoxylanase
Length = 383
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 1 MNEDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF 46
+N + G ++ L + R DP ++W P + + LG +
Sbjct: 34 INTAYGSGVGQIGLSIMRVRIDPDSSKWNIQLPSARQAVSLGAKIM 79
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 45 VFNNVIYAVGGRDDSME-LSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLT 96
VF + AV D+ L P T W+PI+A + G G+L++T
Sbjct: 220 VFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVT 272
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid
Discrimination By The Valyl-Trna Synthetase Editing
Domain
Length = 146
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 70 PHTNTWLPIVAMTSRRSGLGPGSLQLT 96
P T W+PI+A + G G+L++T
Sbjct: 55 PLTEVWIPILADPAVEKDFGTGALKVT 81
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid
Discrimination By The Valyl-Trna Synthetase Editing
Domain
Length = 147
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 70 PHTNTWLPIVAMTSRRSGLGPGSLQLT 96
P T W+PI+A + G G+L++T
Sbjct: 55 PLTEVWIPILADPAVEKDFGTGALKVT 81
>pdb|3RY3|A Chain A, Putative Solute-Binding Protein From Yersinia Pestis.
pdb|3RY3|B Chain B, Putative Solute-Binding Protein From Yersinia Pestis
Length = 528
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75
+S E DP R AP ST F NV+ ++G + SA+KYN T
Sbjct: 131 LSAEVIDPLNVRIHLKAPQST---------FVNVLGSLG-------IVSADKYNAKTYAQ 174
Query: 76 LPIVAMTSRRSGLGPG 91
PI A R PG
Sbjct: 175 KPIGAGPYRLVSFQPG 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,179,374
Number of Sequences: 62578
Number of extensions: 146990
Number of successful extensions: 375
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 75
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)