Query psy14436
Match_columns 133
No_of_seqs 139 out of 1541
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 19:48:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 100.0 5.9E-29 1.3E-33 186.1 13.4 130 3-132 383-551 (571)
2 KOG4441|consensus 100.0 6E-29 1.3E-33 186.1 13.3 130 3-132 335-504 (571)
3 PHA02790 Kelch-like protein; P 99.9 8.7E-26 1.9E-30 166.8 14.6 124 4-132 322-475 (480)
4 PHA02713 hypothetical protein; 99.9 9.4E-26 2E-30 169.0 13.6 131 3-133 306-446 (557)
5 PHA02713 hypothetical protein; 99.9 3.5E-25 7.5E-30 166.0 13.2 120 4-132 355-494 (557)
6 PLN02153 epithiospecifier prot 99.9 6.7E-25 1.4E-29 156.2 13.0 130 3-133 88-231 (341)
7 PHA03098 kelch-like protein; P 99.9 2.9E-24 6.2E-29 160.6 14.6 101 3-103 345-446 (534)
8 TIGR03548 mutarot_permut cycli 99.9 8.6E-24 1.9E-28 149.5 13.1 121 3-133 75-200 (323)
9 PHA02790 Kelch-like protein; P 99.9 7.7E-24 1.7E-28 156.5 12.9 115 4-132 275-389 (480)
10 PHA03098 kelch-like protein; P 99.9 2.9E-23 6.2E-28 155.3 13.3 123 3-133 297-420 (534)
11 PLN02193 nitrile-specifier pro 99.9 1.4E-22 3E-27 149.5 12.9 121 3-133 231-357 (470)
12 PLN02153 epithiospecifier prot 99.9 2.9E-22 6.3E-27 142.6 13.6 127 3-133 35-173 (341)
13 PLN02193 nitrile-specifier pro 99.9 1.4E-21 2.9E-26 144.3 13.7 121 3-132 178-307 (470)
14 TIGR03548 mutarot_permut cycli 99.9 3.7E-21 8E-26 136.1 13.4 122 3-133 16-153 (323)
15 TIGR03547 muta_rot_YjhT mutatr 99.9 8.5E-21 1.8E-25 135.3 12.6 128 2-133 18-182 (346)
16 TIGR03547 muta_rot_YjhT mutatr 99.9 9.6E-21 2.1E-25 135.0 12.0 101 3-103 66-209 (346)
17 PRK14131 N-acetylneuraminic ac 99.8 3.3E-20 7.2E-25 133.7 12.6 125 3-133 87-254 (376)
18 KOG0379|consensus 99.8 2.1E-19 4.6E-24 132.9 11.5 122 3-133 125-255 (482)
19 PRK14131 N-acetylneuraminic ac 99.8 6E-19 1.3E-23 127.2 12.8 128 2-133 39-203 (376)
20 KOG4693|consensus 99.8 4E-19 8.7E-24 119.9 8.0 131 3-133 91-282 (392)
21 KOG1230|consensus 99.8 4.8E-18 1E-22 120.2 10.2 125 4-133 82-221 (521)
22 KOG0379|consensus 99.7 3.4E-17 7.3E-22 121.3 11.9 121 4-133 74-204 (482)
23 PF13964 Kelch_6: Kelch motif 99.7 5.6E-16 1.2E-20 81.0 6.3 49 37-85 1-50 (50)
24 KOG4693|consensus 99.6 2.3E-15 5E-20 101.9 8.8 109 15-132 43-170 (392)
25 KOG1230|consensus 99.6 1.6E-15 3.5E-20 107.5 8.1 115 14-128 152-276 (521)
26 PF01344 Kelch_1: Kelch motif; 99.5 1.5E-14 3.3E-19 74.5 4.4 46 37-82 1-47 (47)
27 KOG4152|consensus 99.5 5.6E-14 1.2E-18 102.4 5.3 100 4-104 46-156 (830)
28 smart00612 Kelch Kelch domain. 99.4 7.5E-13 1.6E-17 67.8 5.1 47 49-95 1-47 (47)
29 KOG4152|consensus 99.4 1.4E-12 3.1E-17 95.2 7.9 99 4-103 219-341 (830)
30 PF13415 Kelch_3: Galactose ox 99.4 1.9E-12 4.2E-17 67.2 5.6 47 47-93 1-49 (49)
31 PF07646 Kelch_2: Kelch motif; 99.4 3.4E-12 7.4E-17 66.2 6.2 46 37-82 1-49 (49)
32 PF13418 Kelch_4: Galactose ox 99.3 2.4E-12 5.1E-17 66.8 3.7 47 37-83 1-49 (49)
33 smart00612 Kelch Kelch domain. 99.1 1.2E-10 2.7E-15 59.4 4.8 46 3-48 2-47 (47)
34 PF13415 Kelch_3: Galactose ox 99.1 2.2E-10 4.7E-15 59.4 4.6 43 3-45 4-48 (49)
35 COG3055 Uncharacterized protei 99.1 3.3E-10 7.2E-15 79.5 5.9 95 16-111 58-162 (381)
36 PF13854 Kelch_5: Kelch motif 98.9 3.5E-09 7.7E-14 53.0 5.2 40 34-73 1-42 (42)
37 PLN02772 guanylate kinase 98.9 1.2E-08 2.5E-13 73.7 9.8 66 36-101 23-93 (398)
38 KOG2437|consensus 98.8 5.6E-09 1.2E-13 76.6 2.9 101 4-104 276-395 (723)
39 PF13964 Kelch_6: Kelch motif 98.7 1.5E-08 3.3E-13 52.5 3.8 41 84-133 1-42 (50)
40 PF01344 Kelch_1: Kelch motif; 98.7 1.1E-08 2.3E-13 52.3 2.9 41 84-133 1-42 (47)
41 COG3055 Uncharacterized protei 98.6 1.7E-07 3.7E-12 66.2 6.6 92 12-103 109-237 (381)
42 PF07646 Kelch_2: Kelch motif; 98.6 8.9E-08 1.9E-12 49.4 4.0 44 84-133 1-44 (49)
43 PF13854 Kelch_5: Kelch motif 98.4 1.4E-06 2.9E-11 43.5 4.6 40 81-129 1-42 (42)
44 PF13418 Kelch_4: Galactose ox 98.4 3.4E-07 7.4E-12 47.1 2.4 41 84-133 1-43 (49)
45 KOG2437|consensus 98.3 2E-07 4.3E-12 68.6 1.6 104 25-132 238-359 (723)
46 PF07250 Glyoxal_oxid_N: Glyox 98.2 4.9E-06 1.1E-10 56.8 6.7 88 15-105 45-139 (243)
47 PLN02772 guanylate kinase 98.1 2.8E-05 6.1E-10 56.5 7.8 67 3-71 37-108 (398)
48 TIGR01640 F_box_assoc_1 F-box 98.0 0.00016 3.4E-09 49.0 10.6 84 16-99 70-158 (230)
49 PF03089 RAG2: Recombination a 97.8 0.00023 5E-09 49.4 8.7 101 4-104 42-174 (337)
50 TIGR01640 F_box_assoc_1 F-box 97.6 0.0026 5.7E-08 43.0 10.7 86 16-101 14-109 (230)
51 PF12768 Rax2: Cortical protei 97.3 0.0055 1.2E-07 43.0 10.2 76 4-80 1-81 (281)
52 PF07893 DUF1668: Protein of u 97.2 0.017 3.6E-07 41.8 11.7 69 16-84 86-169 (342)
53 PF07250 Glyoxal_oxid_N: Glyox 96.4 0.036 7.8E-07 38.2 7.7 53 3-57 80-138 (243)
54 PF08268 FBA_3: F-box associat 95.9 0.12 2.5E-06 31.9 8.0 53 44-97 2-57 (129)
55 PF05096 Glu_cyclase_2: Glutam 95.3 0.32 7E-06 33.9 8.9 90 15-111 67-156 (264)
56 PF03089 RAG2: Recombination a 94.6 1.1 2.3E-05 31.8 9.8 43 15-57 130-174 (337)
57 PF08268 FBA_3: F-box associat 93.1 1.2 2.6E-05 27.3 7.5 67 13-79 17-88 (129)
58 PRK11138 outer membrane biogen 91.9 3.8 8.3E-05 30.0 10.9 82 16-107 304-389 (394)
59 PF09910 DUF2139: Uncharacteri 90.9 4.5 9.8E-05 29.0 8.8 79 17-100 132-219 (339)
60 PF03178 CPSF_A: CPSF A subuni 90.9 2.3 4.9E-05 30.3 7.7 84 16-106 62-151 (321)
61 PF12768 Rax2: Cortical protei 90.7 1.4 3E-05 31.2 6.3 62 62-132 15-77 (281)
62 PF07893 DUF1668: Protein of u 90.1 4.6 0.0001 29.3 8.8 54 46-105 75-128 (342)
63 PRK11138 outer membrane biogen 89.4 6.8 0.00015 28.8 12.0 83 16-111 266-352 (394)
64 PF08450 SGL: SMP-30/Gluconola 89.1 3.8 8.2E-05 27.8 7.5 56 15-81 21-78 (246)
65 TIGR03300 assembly_YfgL outer 87.4 9 0.0002 27.8 10.4 43 63-107 330-374 (377)
66 TIGR03300 assembly_YfgL outer 86.6 10 0.00022 27.5 11.3 82 16-109 75-160 (377)
67 PF05096 Glu_cyclase_2: Glutam 86.4 6.4 0.00014 27.6 7.1 60 41-103 48-108 (264)
68 KOG1036|consensus 81.7 17 0.00037 26.1 8.3 60 2-74 107-166 (323)
69 PF13360 PQQ_2: PQQ-like domai 81.4 13 0.00029 24.7 11.2 88 16-114 3-96 (238)
70 KOG0316|consensus 81.3 16 0.00034 25.6 8.7 77 16-99 81-159 (307)
71 KOG2055|consensus 78.7 23 0.00049 27.0 7.8 68 4-81 228-298 (514)
72 KOG2321|consensus 76.9 6.5 0.00014 30.7 4.7 53 15-74 154-208 (703)
73 TIGR03075 PQQ_enz_alc_DH PQQ-d 76.0 35 0.00075 26.5 11.4 79 16-100 79-171 (527)
74 PF13360 PQQ_2: PQQ-like domai 75.8 20 0.00044 23.7 11.2 87 15-110 45-138 (238)
75 KOG0316|consensus 74.4 16 0.00035 25.5 5.7 55 16-75 123-177 (307)
76 TIGR03075 PQQ_enz_alc_DH PQQ-d 72.8 42 0.00092 26.0 10.4 75 15-99 440-519 (527)
77 KOG2055|consensus 71.8 21 0.00045 27.2 6.1 89 15-108 279-370 (514)
78 COG4257 Vgb Streptogramin lyas 70.5 26 0.00057 25.1 6.1 59 15-79 253-313 (353)
79 PF12217 End_beta_propel: Cata 70.2 36 0.00079 24.2 7.4 65 40-104 193-259 (367)
80 KOG0278|consensus 68.0 40 0.00087 23.8 7.2 77 16-102 205-286 (334)
81 PF03178 CPSF_A: CPSF A subuni 66.8 43 0.00094 23.8 8.7 77 16-96 107-185 (321)
82 TIGR03866 PQQ_ABC_repeats PQQ- 66.7 37 0.00081 23.0 9.6 55 16-77 11-67 (300)
83 PF07734 FBA_1: F-box associat 64.4 34 0.00075 21.8 6.2 40 44-83 2-41 (164)
84 KOG0649|consensus 61.5 55 0.0012 23.1 9.0 86 3-101 170-263 (325)
85 KOG2321|consensus 58.3 49 0.0011 26.2 6.0 25 47-77 145-169 (703)
86 PF06433 Me-amine-dh_H: Methyl 58.1 32 0.00069 25.2 4.9 57 12-75 265-324 (342)
87 PF08662 eIF2A: Eukaryotic tra 55.0 59 0.0013 21.4 6.3 31 47-81 111-141 (194)
88 PRK04792 tolB translocation pr 54.0 94 0.002 23.5 10.3 62 16-80 242-303 (448)
89 KOG1036|consensus 53.7 83 0.0018 22.8 8.9 58 3-72 67-125 (323)
90 KOG1332|consensus 53.6 77 0.0017 22.4 7.2 75 4-97 178-270 (299)
91 KOG2111|consensus 52.8 89 0.0019 22.8 6.3 50 5-54 63-119 (346)
92 PF10282 Lactonase: Lactonase, 51.2 91 0.002 22.5 7.0 77 4-82 2-83 (345)
93 KOG0647|consensus 49.8 99 0.0021 22.5 6.8 62 2-73 85-147 (347)
94 PF13088 BNR_2: BNR repeat-lik 49.7 42 0.00091 23.0 4.4 74 26-99 194-275 (275)
95 PRK04043 tolB translocation pr 49.4 1.1E+02 0.0024 23.0 9.5 63 16-82 213-276 (419)
96 KOG0281|consensus 47.4 55 0.0012 24.3 4.7 71 18-97 342-412 (499)
97 COG1520 FOG: WD40-like repeat 47.4 1.1E+02 0.0024 22.3 10.4 77 17-100 79-159 (370)
98 PRK04792 tolB translocation pr 46.6 1.3E+02 0.0027 22.8 8.7 60 16-79 286-346 (448)
99 PF06433 Me-amine-dh_H: Methyl 46.2 1.2E+02 0.0026 22.4 6.5 61 13-77 64-132 (342)
100 PF06058 DCP1: Dcp1-like decap 45.2 27 0.00059 21.4 2.6 19 14-32 27-45 (122)
101 TIGR02800 propeller_TolB tol-p 44.4 1.2E+02 0.0027 22.1 10.2 61 16-80 214-275 (417)
102 PF14583 Pectate_lyase22: Olig 44.3 57 0.0012 24.4 4.4 86 15-103 215-302 (386)
103 PTZ00421 coronin; Provisional 43.6 1.5E+02 0.0033 22.9 11.0 51 17-74 149-201 (493)
104 PF13570 PQQ_3: PQQ-like domai 43.0 38 0.00082 15.8 4.9 24 43-72 17-40 (40)
105 COG1520 FOG: WD40-like repeat 42.6 1.3E+02 0.0028 21.9 8.5 85 4-100 114-203 (370)
106 PF08950 DUF1861: Protein of u 42.4 97 0.0021 22.2 5.1 60 45-105 34-97 (298)
107 cd00216 PQQ_DH Dehydrogenases 40.4 1.7E+02 0.0036 22.5 9.0 78 15-100 365-454 (488)
108 PRK00178 tolB translocation pr 39.0 1.6E+02 0.0035 21.8 10.4 61 16-80 223-284 (430)
109 COG4257 Vgb Streptogramin lyas 38.8 1.5E+02 0.0033 21.5 6.7 58 16-79 210-270 (353)
110 PF15525 DUF4652: Domain of un 38.0 1.3E+02 0.0027 20.3 8.9 78 13-91 85-168 (200)
111 KOG0318|consensus 37.4 2.1E+02 0.0045 22.6 6.8 46 47-97 454-501 (603)
112 PF15537 Toxin_59: Putative to 36.0 17 0.00037 22.2 0.6 15 18-32 53-67 (125)
113 cd01206 Homer Homer type EVH1 35.9 1E+02 0.0022 18.7 5.3 20 14-33 9-29 (111)
114 cd00094 HX Hemopexin-like repe 35.2 1.3E+02 0.0028 19.7 9.9 50 47-105 110-169 (194)
115 PF02191 OLF: Olfactomedin-lik 35.1 1.6E+02 0.0034 20.6 9.3 87 14-103 87-189 (250)
116 KOG0289|consensus 34.2 2.2E+02 0.0047 22.0 7.0 70 18-94 413-485 (506)
117 PRK04043 tolB translocation pr 34.1 2E+02 0.0044 21.6 7.0 61 16-79 257-317 (419)
118 PRK02888 nitrous-oxide reducta 33.8 1.1E+02 0.0024 24.6 4.8 53 16-73 296-353 (635)
119 PF07443 HARP: HepA-related pr 33.6 18 0.00038 19.0 0.4 11 66-76 21-31 (55)
120 PF02897 Peptidase_S9_N: Proly 33.4 2E+02 0.0043 21.2 10.7 82 15-99 251-341 (414)
121 KOG0310|consensus 32.6 1.8E+02 0.004 22.4 5.5 19 3-26 168-186 (487)
122 PRK00178 tolB translocation pr 32.0 2.1E+02 0.0046 21.2 10.4 60 16-79 267-327 (430)
123 PF14781 BBS2_N: Ciliary BBSom 31.8 1.4E+02 0.003 18.9 7.7 49 48-105 64-118 (136)
124 KOG0310|consensus 31.5 2.4E+02 0.0052 21.9 6.0 24 46-74 164-187 (487)
125 PRK05137 tolB translocation pr 30.9 2.3E+02 0.005 21.2 11.0 61 16-80 226-287 (435)
126 PF14157 YmzC: YmzC-like prote 30.7 49 0.0011 17.8 1.8 15 16-30 41-55 (63)
127 KOG0284|consensus 29.9 1.9E+02 0.0042 22.0 5.2 58 2-71 235-294 (464)
128 PRK09511 nirD nitrite reductas 29.0 1.3E+02 0.0027 17.9 3.6 33 18-52 74-106 (108)
129 PF12217 End_beta_propel: Cata 28.7 2.2E+02 0.0048 20.5 5.1 50 6-55 207-257 (367)
130 cd03476 Rieske_ArOX_small Smal 28.7 1.5E+02 0.0032 18.3 4.8 36 18-54 77-115 (126)
131 PRK01029 tolB translocation pr 26.9 2.8E+02 0.006 20.9 8.0 60 16-79 351-411 (428)
132 TIGR03074 PQQ_membr_DH membran 26.5 3.8E+02 0.0082 22.3 10.2 59 14-77 639-718 (764)
133 cd03548 Rieske_RO_Alpha_OMO_CA 26.3 1.7E+02 0.0036 18.1 4.5 40 16-55 78-124 (136)
134 cd03529 Rieske_NirD Assimilato 25.5 1.5E+02 0.0032 17.2 3.7 14 18-31 70-83 (103)
135 TIGR02800 propeller_TolB tol-p 24.8 2.8E+02 0.0061 20.2 9.9 60 16-79 258-318 (417)
136 KOG0282|consensus 24.5 1.4E+02 0.0029 23.2 3.7 10 48-57 312-321 (503)
137 KOG0280|consensus 24.0 1.5E+02 0.0032 21.6 3.7 18 2-24 179-196 (339)
138 cd00216 PQQ_DH Dehydrogenases 24.0 3.4E+02 0.0073 20.8 10.8 78 16-99 71-161 (488)
139 PF14298 DUF4374: Domain of un 23.4 3.5E+02 0.0075 20.8 6.6 62 15-77 366-430 (435)
140 PRK04922 tolB translocation pr 23.4 3.2E+02 0.007 20.4 10.3 61 16-80 228-289 (433)
141 TIGR03032 conserved hypothetic 23.0 3.2E+02 0.0069 20.2 5.2 51 46-104 211-261 (335)
142 PF05237 MoeZ_MoeB: MoeZ/MoeB 22.9 69 0.0015 18.0 1.6 20 13-32 51-70 (84)
143 PF02191 OLF: Olfactomedin-lik 22.3 2.8E+02 0.0061 19.3 7.2 39 33-76 64-102 (250)
144 PF03088 Str_synth: Strictosid 22.3 90 0.0019 18.0 2.0 19 61-79 35-53 (89)
145 KOG0308|consensus 22.2 4.4E+02 0.0095 21.5 7.3 23 46-73 128-150 (735)
146 cd03475 Rieske_SoxF_SoxL SoxF 22.0 2.4E+02 0.0053 18.5 4.6 40 16-55 120-161 (171)
147 PF07599 DUF1563: Protein of u 21.5 29 0.00062 16.6 -0.1 6 1-6 1-6 (43)
148 PLN00181 protein SPA1-RELATED; 20.7 4.8E+02 0.01 21.4 8.7 22 47-73 629-650 (793)
149 TIGR02377 MocE_fam_FeS Rieske 20.5 1.9E+02 0.0041 16.7 3.8 9 20-28 68-76 (101)
150 PF07433 DUF1513: Protein of u 20.4 3.5E+02 0.0076 19.7 8.4 66 15-82 27-95 (305)
151 cd00200 WD40 WD40 domain, foun 20.2 2.6E+02 0.0056 18.1 8.8 22 47-73 62-83 (289)
No 1
>KOG4441|consensus
Probab=99.96 E-value=5.9e-29 Score=186.10 Aligned_cols=130 Identities=35% Similarity=0.507 Sum_probs=119.1
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCC-ccCeEEEEeCCCCceeeCCCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSM-ELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~ 81 (133)
+...||.++...++++++|||.+++|..+++|+.+|.+|++++++++||++||.++.. .+.++++|||.+++|+.+++|
T Consensus 383 iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M 462 (571)
T KOG4441|consen 383 LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM 462 (571)
T ss_pred EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc
Confidence 3567999999999999999999999999999999999999999999999999988766 899999999999999999999
Q ss_pred CCcccceeeEEeCCeeeeecCce--------------------------------------EEEEeCCCCccceeeeeee
Q psy14436 82 TSRRSGLGPGSLQLTLPTLTSVK--------------------------------------FTYIIPGDPAERLKFTREE 123 (133)
Q Consensus 82 ~~~r~~~~~~~~~~~iy~~gG~~--------------------------------------~~~v~gg~~~~~~~~~~~~ 123 (133)
+.+|..+++++++++||++||.. .+|+.||..+..++..++.
T Consensus 463 ~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ 542 (571)
T KOG4441|consen 463 NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVEC 542 (571)
T ss_pred ccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEE
Confidence 99999999999999999999842 5688888888888888888
Q ss_pred ecCCCCCcc
Q psy14436 124 KEPPHMYWY 132 (133)
Q Consensus 124 ~~~~~~~W~ 132 (133)
|||.++.|.
T Consensus 543 ydp~~d~W~ 551 (571)
T KOG4441|consen 543 YDPETDTWT 551 (571)
T ss_pred cCCCCCcee
Confidence 888888886
No 2
>KOG4441|consensus
Probab=99.96 E-value=6e-29 Score=186.09 Aligned_cols=130 Identities=36% Similarity=0.587 Sum_probs=117.6
Q ss_pred ceeccccc-CCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 3 EDFNHGYR-ELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 3 ~~~~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
...+||.+ +...++++++||+.+++|..+++|+.+|..++++++++.||++||+++...++++|+|||.+++|+.+++|
T Consensus 335 lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m 414 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM 414 (571)
T ss_pred EEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCC
Confidence 45688888 78889999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred CCcccceeeEEeCCeeeeecCce---------------------------------------EEEEeCCCCccceeeeee
Q psy14436 82 TSRRSGLGPGSLQLTLPTLTSVK---------------------------------------FTYIIPGDPAERLKFTRE 122 (133)
Q Consensus 82 ~~~r~~~~~~~~~~~iy~~gG~~---------------------------------------~~~v~gg~~~~~~~~~~~ 122 (133)
+.+|..+++++++++||++||.. .+|++||..+.....+++
T Consensus 415 ~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE 494 (571)
T KOG4441|consen 415 LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVE 494 (571)
T ss_pred CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEE
Confidence 99999999999999998888842 578888877755566688
Q ss_pred eecCCCCCcc
Q psy14436 123 EKEPPHMYWY 132 (133)
Q Consensus 123 ~~~~~~~~W~ 132 (133)
.|||.+++|.
T Consensus 495 ~ydp~~~~W~ 504 (571)
T KOG4441|consen 495 RYDPETNQWT 504 (571)
T ss_pred EEcCCCCcee
Confidence 8888888885
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=8.7e-26 Score=166.84 Aligned_cols=124 Identities=20% Similarity=0.175 Sum_probs=108.5
Q ss_pred eecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCC
Q psy14436 4 DFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTS 83 (133)
Q Consensus 4 ~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 83 (133)
.++||.++ .+++++||+.+++|..+++||.+|..+++++++++||++||.... ...+++|||.+++|+.+++|+.
T Consensus 322 YviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 322 YVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred EEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCCCCC
Confidence 34566543 367899999999999999999999999999999999999997533 3679999999999999999999
Q ss_pred cccceeeEEeCCeeeeecCce------------------------------EEEEeCCCCccceeeeeeeecCCCCCcc
Q psy14436 84 RRSGLGPGSLQLTLPTLTSVK------------------------------FTYIIPGDPAERLKFTREEKEPPHMYWY 132 (133)
Q Consensus 84 ~r~~~~~~~~~~~iy~~gG~~------------------------------~~~v~gg~~~~~~~~~~~~~~~~~~~W~ 132 (133)
+|..+++++++++||++||.. .+|++||........+++.|||.+++|.
T Consensus 397 ~r~~~~~~~~~~~IYv~GG~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 397 PHYKSCALVFGRRLFLVGRNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred ccccceEEEECCEEEEECCceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEE
Confidence 999999999999999999953 6899999765555678999999999996
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=9.4e-26 Score=169.00 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=106.9
Q ss_pred ceeccccc-CCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 3 EDFNHGYR-ELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 3 ~~~~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
++++||.. +...++++++||+.+++|..+++||.+|..+++++++++||++||.++....+.+++|||.+++|+.+++|
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m 385 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM 385 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCC
Confidence 45667765 44568999999999999999999999999999999999999999987665678999999999999999999
Q ss_pred CCcccceeeEEeCCeeeeecCceEEEEeCC---------CCccceeeeeeeecCCCCCccC
Q psy14436 82 TSRRSGLGPGSLQLTLPTLTSVKFTYIIPG---------DPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 82 ~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg---------~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
|.+|..+++++++++||++||........+ ........+++.|||.+++|.+
T Consensus 386 p~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 386 PIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred CcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 999999999999999988877643110000 0011124679999999999963
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=3.5e-25 Score=165.97 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=101.3
Q ss_pred eecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCC------------------CccCeE
Q psy14436 4 DFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDS------------------MELSSA 65 (133)
Q Consensus 4 ~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~------------------~~~~~~ 65 (133)
...||.++...++++++|||.+++|..+++||.+|..+++++++++||++||.+.. ...+.+
T Consensus 355 YviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~v 434 (557)
T PHA02713 355 YAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKV 434 (557)
T ss_pred EEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceE
Confidence 45688877667899999999999999999999999999999999999999997532 125789
Q ss_pred EEEeCCCCceeeCCCCCCcccceeeEEeCCeeeeecCceEEEEeCCCCcc-ceeeeeeeecCCC-CCcc
Q psy14436 66 EKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAE-RLKFTREEKEPPH-MYWY 132 (133)
Q Consensus 66 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~-~~~~~~~~~~~~~-~~W~ 132 (133)
++|||.+++|+.+++|+.+|..+++++++++||++ ||.... .....++.|||.+ ++|.
T Consensus 435 e~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~---------GG~~~~~~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 435 IRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVV---------CDIKDEKNVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred EEECCCCCeEeecCCCCcccccCcEEEECCEEEEE---------eCCCCCCccceeEEEecCCCCCCee
Confidence 99999999999999999999999999999999554 443322 2234679999999 7996
No 6
>PLN02153 epithiospecifier protein
Probab=99.93 E-value=6.7e-25 Score=156.16 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=107.9
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCC-----cccccceEEEEECCEEEEEecCCCCC------ccCeEEEEeCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPM-----STRRKHLGCAVFNNVIYAVGGRDDSM------ELSSAEKYNPH 71 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~------~~~~~~~yd~~ 71 (133)
++++||......++++++||+++++|..+++| |.+|..|++++.+++|||+||.+... ..+++++||+.
T Consensus 88 iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~ 167 (341)
T PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIA 167 (341)
T ss_pred EEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECC
Confidence 45678887666789999999999999998877 78899999999999999999986321 34689999999
Q ss_pred CCceeeCCCCC---CcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 72 TNTWLPIVAMT---SRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 72 ~~~W~~~~~~~---~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
+++|++++++. .+|..+++++++++||++||....++.||.... ...+++.||+.+++|.+
T Consensus 168 ~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~-~~~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 168 DGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDY-ESNAVQFFDPASGKWTE 231 (341)
T ss_pred CCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccce-ecCceEEEEcCCCcEEe
Confidence 99999998764 789999999999999999988655666664432 24579999999999974
No 7
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=2.9e-24 Score=160.62 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=91.1
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCC-CCccCeEEEEeCCCCceeeCCCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDD-SMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
.++.||..+...++++++||+.+++|..+++||.+|..++++.++++||++||... ....+.+++|||.+++|+.++++
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 424 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL 424 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC
Confidence 45678887777789999999999999999999999999999999999999999753 33468899999999999999999
Q ss_pred CCcccceeeEEeCCeeeeecCc
Q psy14436 82 TSRRSGLGPGSLQLTLPTLTSV 103 (133)
Q Consensus 82 ~~~r~~~~~~~~~~~iy~~gG~ 103 (133)
|.+|..+++++++++||++||.
T Consensus 425 p~~r~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 425 PISHYGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred CccccCceEEEECCEEEEECCc
Confidence 9999999999999999988884
No 8
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.91 E-value=8.6e-24 Score=149.49 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=100.9
Q ss_pred ceecccccCCeeecEEEEEeCCCCce----eecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRW----TAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
.+++||.++...++++++||+.+++| ..+++||.+|..|++++++++||++||.......+++++||+.+++|+++
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~ 154 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFEL 154 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeEC
Confidence 45678887777789999999999998 77899999999999999999999999986555678999999999999999
Q ss_pred CCCC-CcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 79 VAMT-SRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 79 ~~~~-~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
++|| .+|..+++++++++||++|| ..... ..+++.||+.+++|.+
T Consensus 155 ~~~p~~~r~~~~~~~~~~~iYv~GG---------~~~~~-~~~~~~yd~~~~~W~~ 200 (323)
T TIGR03548 155 PDFPGEPRVQPVCVKLQNELYVFGG---------GSNIA-YTDGYKYSPKKNQWQK 200 (323)
T ss_pred CCCCCCCCCcceEEEECCEEEEEcC---------CCCcc-ccceEEEecCCCeeEE
Confidence 9988 47888888899999955555 33222 2357899999999963
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=99.91 E-value=7.7e-24 Score=156.54 Aligned_cols=115 Identities=19% Similarity=0.305 Sum_probs=98.3
Q ss_pred eecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCC
Q psy14436 4 DFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTS 83 (133)
Q Consensus 4 ~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 83 (133)
+++||.++....+++++|||.+++|..+++||.+|..+++++++++||++||.+. .+.+++|||.+++|+.+++||.
T Consensus 275 yviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 275 YLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred EEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCC
Confidence 4678877666788999999999999999999999999999999999999999753 2569999999999999999999
Q ss_pred cccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCcc
Q psy14436 84 RRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWY 132 (133)
Q Consensus 84 ~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~ 132 (133)
+|..+++++++++||++||. ... ...++.|||.++.|.
T Consensus 352 ~r~~~~~~~~~g~IYviGG~---------~~~--~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGH---------SET--DTTTEYLLPNHDQWQ 389 (480)
T ss_pred CCcccEEEEECCEEEEecCc---------CCC--CccEEEEeCCCCEEE
Confidence 99999999999999665553 221 135778888888886
No 10
>PHA03098 kelch-like protein; Provisional
Probab=99.91 E-value=2.9e-23 Score=155.27 Aligned_cols=123 Identities=24% Similarity=0.319 Sum_probs=104.2
Q ss_pred ceecccccC-CeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 3 EDFNHGYRE-LQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 3 ~~~~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
.++.||... ....+++++||+.+++|.++++||.+|..+++++++++||++||.......+.+++||+.+++|+.+++|
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l 376 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL 376 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc
Confidence 356777764 3457899999999999999999999999999999999999999987666688999999999999999999
Q ss_pred CCcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 82 TSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 82 ~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
|.+|..+++++++++||++||.. .......+++.||+.++.|.+
T Consensus 377 p~~r~~~~~~~~~~~iYv~GG~~--------~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 377 IFPRYNPCVVNVNNLIYVIGGIS--------KNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CcCCccceEEEECCEEEEECCcC--------CCCcccceEEEEeCCCCeeee
Confidence 99999999999999995555532 122235678999999999974
No 11
>PLN02193 nitrile-specifier protein
Probab=99.89 E-value=1.4e-22 Score=149.54 Aligned_cols=121 Identities=19% Similarity=0.238 Sum_probs=102.5
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCC---cccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPM---STRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
++++||......++++++||+.+++|.+++++ |.+|..|++++.+++||++||.+.......+++||+.+++|++++
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 310 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCS 310 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCC
Confidence 45678877766789999999999999999887 889999999999999999999976666789999999999999987
Q ss_pred C---CCCcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 80 A---MTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 80 ~---~~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
+ +|.+|..++++++++++|++|| ..+.. ..+++.||+.++.|.+
T Consensus 311 ~~~~~~~~R~~~~~~~~~gkiyviGG---------~~g~~-~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 311 TPGDSFSIRGGAGLEVVQGKVWVVYG---------FNGCE-VDDVHYYDPVQDKWTQ 357 (470)
T ss_pred CCCCCCCCCCCcEEEEECCcEEEEEC---------CCCCc-cCceEEEECCCCEEEE
Confidence 4 6788999999999999955555 33322 4689999999999964
No 12
>PLN02153 epithiospecifier protein
Probab=99.89 E-value=2.9e-22 Score=142.65 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=98.5
Q ss_pred ceecccccC--CeeecEEEEEeCCCCceeecCCCc-ccc---cceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 3 EDFNHGYRE--LQLQVSVERFDPKLNRWTAMAPMS-TRR---KHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 3 ~~~~GG~~~--~~~~~~~~~yd~~t~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
++++||... ....+++++||+.+++|.++++++ .+| ..|++++++++||++||.......+++++||+.+++|+
T Consensus 35 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 35 LYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred EEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 345688753 345689999999999999988653 333 36888999999999999876666789999999999999
Q ss_pred eCCCC-----CCcccceeeEEeCCeeeeecCceEEEEeCCC-CccceeeeeeeecCCCCCccC
Q psy14436 77 PIVAM-----TSRRSGLGPGSLQLTLPTLTSVKFTYIIPGD-PAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 77 ~~~~~-----~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~-~~~~~~~~~~~~~~~~~~W~~ 133 (133)
++++| |.+|..|++++++++|||+||... ++. .....+.+++.||+.++.|.+
T Consensus 115 ~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~~~~v~~yd~~~~~W~~ 173 (341)
T PLN02153 115 FLTKLDEEGGPEARTFHSMASDENHVYVFGGVSK----GGLMKTPERFRTIEAYNIADGKWVQ 173 (341)
T ss_pred EeccCCCCCCCCCceeeEEEEECCEEEEECCccC----CCccCCCcccceEEEEECCCCeEee
Confidence 99877 789999999999999966666532 111 111234578999999999963
No 13
>PLN02193 nitrile-specifier protein
Probab=99.88 E-value=1.4e-21 Score=144.33 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=97.4
Q ss_pred ceecccccC--CeeecEEEEEeCCCCceeecCC---Ccc-cccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 3 EDFNHGYRE--LQLQVSVERFDPKLNRWTAMAP---MST-RRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 3 ~~~~GG~~~--~~~~~~~~~yd~~t~~W~~~~~---~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
+++.||... ....+++++||+.+++|..++. +|. +|..|++++++++||++||.+.....+++++||+.+++|+
T Consensus 178 iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~ 257 (470)
T PLN02193 178 IYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWK 257 (470)
T ss_pred EEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEE
Confidence 345677642 2345789999999999998764 333 3567888999999999999876667889999999999999
Q ss_pred eCCCC---CCcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCcc
Q psy14436 77 PIVAM---TSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWY 132 (133)
Q Consensus 77 ~~~~~---~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~ 132 (133)
+++++ |.+|..|++++++++| |++||........+++.||+.++.|.
T Consensus 258 ~l~~~~~~P~~R~~h~~~~~~~~i---------Yv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 258 LLTPVEEGPTPRSFHSMAADEENV---------YVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EcCcCCCCCCCccceEEEEECCEE---------EEECCCCCCCCcceEEEEECCCCEEE
Confidence 99888 8899999999999999 55555444445567889999999995
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.87 E-value=3.7e-21 Score=136.10 Aligned_cols=122 Identities=11% Similarity=0.004 Sum_probs=98.7
Q ss_pred ceecccccCC----------eeecEEEEEe-CC-CCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeC
Q psy14436 3 EDFNHGYREL----------QLQVSVERFD-PK-LNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNP 70 (133)
Q Consensus 3 ~~~~GG~~~~----------~~~~~~~~yd-~~-t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 70 (133)
.+++||.+.. ...+++++|+ +. +.+|..+++||.+|..++++++++.||++||.......+++++||+
T Consensus 16 l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~ 95 (323)
T TIGR03548 16 ILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITL 95 (323)
T ss_pred EEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEE
Confidence 4677886532 3567888885 33 2379999999999988888899999999999877667889999999
Q ss_pred CCCce----eeCCCCCCcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 71 HTNTW----LPIVAMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 71 ~~~~W----~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
.+++| +.+++||.+|..+++++++++||++|| .......++++.||+.++.|.+
T Consensus 96 ~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG---------~~~~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 96 DESKEELICETIGNLPFTFENGSACYKDGTLYVGGG---------NRNGKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred cCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeC---------cCCCccCceEEEEcCCCCCeeE
Confidence 99998 788999999999999999999955555 3333345689999999999974
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.86 E-value=8.5e-21 Score=135.32 Aligned_cols=128 Identities=15% Similarity=0.188 Sum_probs=93.8
Q ss_pred Cceec-ccccCCeeecEEEEEeC--CCCceeecCCCc-ccccceEEEEECCEEEEEecCCCCC------ccCeEEEEeCC
Q psy14436 2 NEDFN-HGYRELQLQVSVERFDP--KLNRWTAMAPMS-TRRKHLGCAVFNNVIYAVGGRDDSM------ELSSAEKYNPH 71 (133)
Q Consensus 2 ~~~~~-GG~~~~~~~~~~~~yd~--~t~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~------~~~~~~~yd~~ 71 (133)
|.|++ ||.. .+++++||+ .+++|.++++|| .+|..+++++++++||++||..... .++++++|||.
T Consensus 18 ~~vyv~GG~~----~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~ 93 (346)
T TIGR03547 18 DKVYVGLGSA----GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPK 93 (346)
T ss_pred CEEEEEcccc----CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECC
Confidence 44555 5542 367899996 678999999999 5899999999999999999985321 36789999999
Q ss_pred CCceeeCC-CCCCcccceeeE-EeCCeeeeecCceEEE-----------------------EeCCCC--ccceeeeeeee
Q psy14436 72 TNTWLPIV-AMTSRRSGLGPG-SLQLTLPTLTSVKFTY-----------------------IIPGDP--AERLKFTREEK 124 (133)
Q Consensus 72 ~~~W~~~~-~~~~~r~~~~~~-~~~~~iy~~gG~~~~~-----------------------v~gg~~--~~~~~~~~~~~ 124 (133)
+++|++++ ++|.+|..++++ +++++||++||..... .+.+.. ......+++.|
T Consensus 94 ~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Y 173 (346)
T TIGR03547 94 KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSY 173 (346)
T ss_pred CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEE
Confidence 99999997 566777777666 6899998888764210 000000 00123579999
Q ss_pred cCCCCCccC
Q psy14436 125 EPPHMYWYK 133 (133)
Q Consensus 125 ~~~~~~W~~ 133 (133)
||.+++|.+
T Consensus 174 Dp~t~~W~~ 182 (346)
T TIGR03547 174 DPSTNQWRN 182 (346)
T ss_pred ECCCCceeE
Confidence 999999973
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.86 E-value=9.6e-21 Score=135.04 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=80.4
Q ss_pred ceecccccCC------eeecEEEEEeCCCCceeecC-CCcccccceEEE-EECCEEEEEecCCCCC--------------
Q psy14436 3 EDFNHGYREL------QLQVSVERFDPKLNRWTAMA-PMSTRRKHLGCA-VFNNVIYAVGGRDDSM-------------- 60 (133)
Q Consensus 3 ~~~~GG~~~~------~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~-~~~~~iyv~GG~~~~~-------------- 60 (133)
+.++||.... ..++++++||+.+++|++++ ++|.+|..++++ +++++||++||.+...
T Consensus 66 iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 145 (346)
T TIGR03547 66 LYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKD 145 (346)
T ss_pred EEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCcc
Confidence 4566776431 25789999999999999997 456667777666 6899999999975310
Q ss_pred --------------------ccCeEEEEeCCCCceeeCCCCCC-cccceeeEEeCCeeeeecCc
Q psy14436 61 --------------------ELSSAEKYNPHTNTWLPIVAMTS-RRSGLGPGSLQLTLPTLTSV 103 (133)
Q Consensus 61 --------------------~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~iy~~gG~ 103 (133)
..+.+++|||.+++|+.+++||. +|..+++++++++||++||.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 146 SEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred chhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 13789999999999999999996 68889999999999666664
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.84 E-value=3.3e-20 Score=133.68 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=90.9
Q ss_pred ceecccccC------CeeecEEEEEeCCCCceeecCC-CcccccceEEEE-ECCEEEEEecCCCC---------------
Q psy14436 3 EDFNHGYRE------LQLQVSVERFDPKLNRWTAMAP-MSTRRKHLGCAV-FNNVIYAVGGRDDS--------------- 59 (133)
Q Consensus 3 ~~~~GG~~~------~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~--------------- 59 (133)
+.++||... ...++++++||+.+++|.++++ +|.++..|++++ .+++||++||....
T Consensus 87 IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~ 166 (376)
T PRK14131 87 LYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKD 166 (376)
T ss_pred EEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccc
Confidence 456677653 2457899999999999999985 466677777776 79999999997521
Q ss_pred -------------------CccCeEEEEeCCCCceeeCCCCCC-cccceeeEEeCCeeeeecCceEEEEeCCCCccceee
Q psy14436 60 -------------------MELSSAEKYNPHTNTWLPIVAMTS-RRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKF 119 (133)
Q Consensus 60 -------------------~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~ 119 (133)
...+.+++|||.+++|+.++++|. +|..++++.++++||++||... .+. .....
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~----~~~--~~~~~ 240 (376)
T PRK14131 167 KTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIK----PGL--RTDAV 240 (376)
T ss_pred hhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeEC----CCc--CChhh
Confidence 014689999999999999999996 7888888899999977776422 111 11111
Q ss_pred eeeeecCCCCCccC
Q psy14436 120 TREEKEPPHMYWYK 133 (133)
Q Consensus 120 ~~~~~~~~~~~W~~ 133 (133)
....|++.+++|.+
T Consensus 241 ~~~~~~~~~~~W~~ 254 (376)
T PRK14131 241 KQGKFTGNNLKWQK 254 (376)
T ss_pred eEEEecCCCcceee
Confidence 22345777888863
No 18
>KOG0379|consensus
Probab=99.82 E-value=2.1e-19 Score=132.86 Aligned_cols=122 Identities=15% Similarity=0.181 Sum_probs=106.2
Q ss_pred ceecccccC-CeeecEEEEEeCCCCceeecC---CCcccccceEEEEECCEEEEEecCCCCC-ccCeEEEEeCCCCceee
Q psy14436 3 EDFNHGYRE-LQLQVSVERFDPKLNRWTAMA---PMSTRRKHLGCAVFNNVIYAVGGRDDSM-ELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 3 ~~~~GG~~~-~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~ 77 (133)
.++.||.+. ....++++.||+.|++|..+. ++|.+|.+|++++.+.+|||+||..... ..+++++||+.+.+|.+
T Consensus 125 l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 125 LYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSE 204 (482)
T ss_pred EEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccccccee
Confidence 467888873 667899999999999998864 5788999999999999999999987544 78999999999999999
Q ss_pred CC---CCCCcccceeeEEeCCeeeeecCceEEEEeCCCC-ccceeeeeeeecCCCCCccC
Q psy14436 78 IV---AMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDP-AERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 78 ~~---~~~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~-~~~~~~~~~~~~~~~~~W~~ 133 (133)
+. +.|.+|..|+++++++++ +++||.. +..++++++.+|..+..|.+
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~~---------~v~gG~~~~~~~l~D~~~ldl~~~~W~~ 255 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNKL---------LVFGGGDDGDVYLNDVHILDLSTWEWKL 255 (482)
T ss_pred cccCCCCCCCCCCceEEEECCeE---------EEEeccccCCceecceEeeecccceeee
Confidence 85 668899999999999999 6666544 78888999999999988863
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.81 E-value=6e-19 Score=127.17 Aligned_cols=128 Identities=20% Similarity=0.253 Sum_probs=92.7
Q ss_pred Cceec-ccccCCeeecEEEEEeCC--CCceeecCCCc-ccccceEEEEECCEEEEEecCCC------CCccCeEEEEeCC
Q psy14436 2 NEDFN-HGYRELQLQVSVERFDPK--LNRWTAMAPMS-TRRKHLGCAVFNNVIYAVGGRDD------SMELSSAEKYNPH 71 (133)
Q Consensus 2 ~~~~~-GG~~~~~~~~~~~~yd~~--t~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~ 71 (133)
|.|+. ||.. .+.+++||+. +++|..+++|| .+|..+++++++++||++||... ....+++++||+.
T Consensus 39 ~~iyv~gG~~----~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~ 114 (376)
T PRK14131 39 NTVYVGLGSA----GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPK 114 (376)
T ss_pred CEEEEEeCCC----CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCC
Confidence 45565 4442 2457899986 47899999987 58999999999999999999853 1235789999999
Q ss_pred CCceeeCCC-CCCcccceeeEE-eCCeeeeecCceEEE---------EeCCC---------------C-ccceeeeeeee
Q psy14436 72 TNTWLPIVA-MTSRRSGLGPGS-LQLTLPTLTSVKFTY---------IIPGD---------------P-AERLKFTREEK 124 (133)
Q Consensus 72 ~~~W~~~~~-~~~~r~~~~~~~-~~~~iy~~gG~~~~~---------v~gg~---------------~-~~~~~~~~~~~ 124 (133)
+++|+++++ +|.++..+++++ .+++||++||..... .+++. . ......+++.|
T Consensus 115 ~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~Y 194 (376)
T PRK14131 115 TNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSY 194 (376)
T ss_pred CCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEE
Confidence 999999985 467777777776 899998888764210 00000 0 00123578999
Q ss_pred cCCCCCccC
Q psy14436 125 EPPHMYWYK 133 (133)
Q Consensus 125 ~~~~~~W~~ 133 (133)
|+.++.|.+
T Consensus 195 D~~t~~W~~ 203 (376)
T PRK14131 195 DPSTNQWKN 203 (376)
T ss_pred ECCCCeeeE
Confidence 999999963
No 20
>KOG4693|consensus
Probab=99.79 E-value=4e-19 Score=119.95 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=108.2
Q ss_pred ceecccccC-CeeecEEEEEeCCCCceeecC---CCcccccceEEEEECCEEEEEecCCC--CCccCeEEEEeCCCCcee
Q psy14436 3 EDFNHGYRE-LQLQVSVERFDPKLNRWTAMA---PMSTRRKHLGCAVFNNVIYAVGGRDD--SMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 3 ~~~~GG~~~-~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~~~~W~ 76 (133)
+++.||.+. ...-|.+++|||+++.|.+.. -.|.+|.+|++|++++.+|+|||+.. ....++++++|..|-+|+
T Consensus 91 ~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr 170 (392)
T KOG4693|consen 91 AYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWR 170 (392)
T ss_pred EEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeee
Confidence 467788875 556789999999999998764 57889999999999999999999853 445788999999999999
Q ss_pred eCC---CCCCcccceeeEEeCCeeeeecCce-------------------------------------------------
Q psy14436 77 PIV---AMTSRRSGLGPGSLQLTLPTLTSVK------------------------------------------------- 104 (133)
Q Consensus 77 ~~~---~~~~~r~~~~~~~~~~~iy~~gG~~------------------------------------------------- 104 (133)
.+. ..|.-|..|++.++++.+|||||..
T Consensus 171 ~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYn 250 (392)
T KOG4693|consen 171 EMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYN 250 (392)
T ss_pred ehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEc
Confidence 886 4466788999999999999999874
Q ss_pred -EEEEeCCCCcc--ceeeeeeeecCCCCCccC
Q psy14436 105 -FTYIIPGDPAE--RLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 105 -~~~v~gg~~~~--~~~~~~~~~~~~~~~W~~ 133 (133)
..|++||+++. ...++...|||.+..|.+
T Consensus 251 g~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~ 282 (392)
T KOG4693|consen 251 GKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSV 282 (392)
T ss_pred ceEEEecccchhhhhhhcceeecccccchhee
Confidence 46888886644 445678888998888863
No 21
>KOG1230|consensus
Probab=99.77 E-value=4.8e-18 Score=120.17 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=99.4
Q ss_pred eeccccc--C--CeeecEEEEEeCCCCceeec--CCCcccccceEEEEEC-CEEEEEecCCC--CC----ccCeEEEEeC
Q psy14436 4 DFNHGYR--E--LQLQVSVERFDPKLNRWTAM--APMSTRRKHLGCAVFN-NVIYAVGGRDD--SM----ELSSAEKYNP 70 (133)
Q Consensus 4 ~~~GG~~--~--~~~~~~~~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~-~~iyv~GG~~~--~~----~~~~~~~yd~ 70 (133)
|+.||.- + ....++++.||.++++|+++ |+.|+||+.|.++++. +.+|+|||-.. ++ ...+++.||+
T Consensus 82 ilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~ 161 (521)
T KOG1230|consen 82 ILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDL 161 (521)
T ss_pred EEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeee
Confidence 3455552 3 23579999999999999887 5778999999999885 89999999532 11 2578999999
Q ss_pred CCCceeeCC--CCCCcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 71 HTNTWLPIV--AMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 71 ~~~~W~~~~--~~~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
.+++|++|. ..|.+|++|..++...+|+||||.-.. .....|.+++++|++.+.+|+|
T Consensus 162 ~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~-----nr~y~YyNDvy~FdLdtykW~K 221 (521)
T KOG1230|consen 162 KTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS-----NRDYIYYNDVYAFDLDTYKWSK 221 (521)
T ss_pred ccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC-----CCceEEeeeeEEEeccceeeee
Confidence 999999986 678999999999999999666664321 3345677899999999999986
No 22
>KOG0379|consensus
Probab=99.74 E-value=3.4e-17 Score=121.27 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=99.1
Q ss_pred eecccccCCeeec--EEEEEeCCCCceeecC---CCcccccceEEEEECCEEEEEecCCC-CCccCeEEEEeCCCCceee
Q psy14436 4 DFNHGYRELQLQV--SVERFDPKLNRWTAMA---PMSTRRKHLGCAVFNNVIYAVGGRDD-SMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 4 ~~~GG~~~~~~~~--~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~ 77 (133)
++.||........ ++|++|..+..|.... ..|.+|.+|.+++++++||+|||.+. ....++++.||+.+.+|..
T Consensus 74 ~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~ 153 (482)
T KOG0379|consen 74 YVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSL 153 (482)
T ss_pred EEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEE
Confidence 3445555444444 4999999999997764 56789999999999999999999873 5568899999999999998
Q ss_pred CC---CCCCcccceeeEEeCCeeeeecCceEEEEeCCCCccc-eeeeeeeecCCCCCccC
Q psy14436 78 IV---AMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAER-LKFTREEKEPPHMYWYK 133 (133)
Q Consensus 78 ~~---~~~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~-~~~~~~~~~~~~~~W~~ 133 (133)
+. .+|.+|.+|++++.++++ ||+||..... ..+++++||..+..|.+
T Consensus 154 l~~~~~~P~~r~~Hs~~~~g~~l---------~vfGG~~~~~~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 154 LSPTGDPPPPRAGHSATVVGTKL---------VVFGGIGGTGDSLNDLHIYDLETSTWSE 204 (482)
T ss_pred ecCcCCCCCCcccceEEEECCEE---------EEECCccCcccceeeeeeecccccccee
Confidence 75 568899999999999999 6666644444 77899999999999975
No 23
>PF13964 Kelch_6: Kelch motif
Probab=99.65 E-value=5.6e-16 Score=80.98 Aligned_cols=49 Identities=33% Similarity=0.567 Sum_probs=45.5
Q ss_pred cccceEEEEECCEEEEEecCCC-CCccCeEEEEeCCCCceeeCCCCCCcc
Q psy14436 37 RRKHLGCAVFNNVIYAVGGRDD-SMELSSAEKYNPHTNTWLPIVAMTSRR 85 (133)
Q Consensus 37 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~r 85 (133)
||..|++++++++||++||... ....+++++||+.+++|+++++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 5888999999999999999987 677899999999999999999999887
No 24
>KOG4693|consensus
Probab=99.63 E-value=2.3e-15 Score=101.94 Aligned_cols=109 Identities=23% Similarity=0.401 Sum_probs=89.2
Q ss_pred ecEEEEEeCCCCceeecCC-------------CcccccceEEEEECCEEEEEecCCC-CCccCeEEEEeCCCCceeeCC-
Q psy14436 15 QVSVERFDPKLNRWTAMAP-------------MSTRRKHLGCAVFNNVIYAVGGRDD-SMELSSAEKYNPHTNTWLPIV- 79 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~-------------~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~- 79 (133)
.-++.+++..+-+|.++++ .|..|++|..+..++++|+.||+++ ....+.+++|||.+++|++..
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v 122 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEV 122 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccce
Confidence 3468899999999999864 3456999999999999999999976 455788999999999998875
Q ss_pred --CCCCcccceeeEEeCCeeeeecCceEEEEeCCCC--ccceeeeeeeecCCCCCcc
Q psy14436 80 --AMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDP--AERLKFTREEKEPPHMYWY 132 (133)
Q Consensus 80 --~~~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~--~~~~~~~~~~~~~~~~~W~ 132 (133)
-.|.+|.+|++|++++.+ ||+||+. ..+...++..+|..+..|.
T Consensus 123 ~G~vPgaRDGHsAcV~gn~M---------yiFGGye~~a~~FS~d~h~ld~~TmtWr 170 (392)
T KOG4693|consen 123 EGFVPGARDGHSACVWGNQM---------YIFGGYEEDAQRFSQDTHVLDFATMTWR 170 (392)
T ss_pred eeecCCccCCceeeEECcEE---------EEecChHHHHHhhhccceeEeccceeee
Confidence 678899999999999999 5566533 4455667778888777774
No 25
>KOG1230|consensus
Probab=99.63 E-value=1.6e-15 Score=107.52 Aligned_cols=115 Identities=14% Similarity=0.116 Sum_probs=89.0
Q ss_pred eecEEEEEeCCCCceeecC--CCcccccceEEEEECCEEEEEecCCCC----CccCeEEEEeCCCCceeeCCC---CCCc
Q psy14436 14 LQVSVERFDPKLNRWTAMA--PMSTRRKHLGCAVFNNVIYAVGGRDDS----MELSSAEKYNPHTNTWLPIVA---MTSR 84 (133)
Q Consensus 14 ~~~~~~~yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~~~~~---~~~~ 84 (133)
...++|.||.++++|+++. .-|.+|++|.+++...+|++|||+... .+.+++++||+.+-+|.++.+ -|.+
T Consensus 152 HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Ptp 231 (521)
T KOG1230|consen 152 HYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTP 231 (521)
T ss_pred hhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCC
Confidence 4689999999999999985 568899999999999999999998532 237899999999999999964 3789
Q ss_pred ccceeeEEe-CCeeeeecCceEEEEeCCCCccceeeeeeeecCCC
Q psy14436 85 RSGLGPGSL-QLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPH 128 (133)
Q Consensus 85 r~~~~~~~~-~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~ 128 (133)
|+++...+. ++.|||.||..-..+---......++++..++|.+
T Consensus 232 RSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 232 RSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred CCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCc
Confidence 999999888 89996666654322111122233455777777776
No 26
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.53 E-value=1.5e-14 Score=74.50 Aligned_cols=46 Identities=37% Similarity=0.620 Sum_probs=42.2
Q ss_pred cccceEEEEECCEEEEEecCCC-CCccCeEEEEeCCCCceeeCCCCC
Q psy14436 37 RRKHLGCAVFNNVIYAVGGRDD-SMELSSAEKYNPHTNTWLPIVAMT 82 (133)
Q Consensus 37 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~ 82 (133)
||..|++++++++||++||.+. ....+++++||+.+++|+++++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5889999999999999999987 778999999999999999999886
No 27
>KOG4152|consensus
Probab=99.48 E-value=5.6e-14 Score=102.44 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=75.0
Q ss_pred eecccccCCeeecEEEEEeCCCCceeec---CCCcccccceEEEEECCEEEEEecCCC-CCccCeEEEEeCCCCceeeCC
Q psy14436 4 DFNHGYRELQLQVSVERFDPKLNRWTAM---APMSTRRKHLGCAVFNNVIYAVGGRDD-SMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 4 ~~~GG~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~ 79 (133)
+++||.+.. ..+++.+|+..+++|..- .++|++-+.|+.++.+.+||+|||.-. ..+.++++......-.|+++.
T Consensus 46 viFGGGNEG-iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlk 124 (830)
T KOG4152|consen 46 VIFGGGNEG-IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLK 124 (830)
T ss_pred EEecCCccc-chhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcC
Confidence 445555433 489999999999999663 478888889999999999999999753 223444433333334567764
Q ss_pred -------CCCCcccceeeEEeCCeeeeecCce
Q psy14436 80 -------AMTSRRSGLGPGSLQLTLPTLTSVK 104 (133)
Q Consensus 80 -------~~~~~r~~~~~~~~~~~iy~~gG~~ 104 (133)
+.|.+|-+|+....++|.|+|||..
T Consensus 125 p~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLa 156 (830)
T KOG4152|consen 125 PKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLA 156 (830)
T ss_pred CCCCCCCCCCCCccCceeEEeccEeEEecccc
Confidence 4578999999999999999999984
No 28
>smart00612 Kelch Kelch domain.
Probab=99.40 E-value=7.5e-13 Score=67.82 Aligned_cols=47 Identities=43% Similarity=0.734 Sum_probs=42.3
Q ss_pred EEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeCC
Q psy14436 49 VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQL 95 (133)
Q Consensus 49 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 95 (133)
+||++||.......+++++|||.+++|+++++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998765668899999999999999999999999999988865
No 29
>KOG4152|consensus
Probab=99.39 E-value=1.4e-12 Score=95.21 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=82.6
Q ss_pred eecccccCCeeecEEEEEeCCCCceeecC---CCcccccceEEEEECCEEEEEecCC-----C---------CCccCeEE
Q psy14436 4 DFNHGYRELQLQVSVERFDPKLNRWTAMA---PMSTRRKHLGCAVFNNVIYAVGGRD-----D---------SMELSSAE 66 (133)
Q Consensus 4 ~~~GG~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~-----~---------~~~~~~~~ 66 (133)
++.||.++.. +.++|.+|..|-.|.+.. ..|.||+-|+++.+++++|||||+- + -...+++.
T Consensus 219 vvyGGM~G~R-LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~ 297 (830)
T KOG4152|consen 219 VVYGGMSGCR-LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLA 297 (830)
T ss_pred EEEccccccc-ccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeecccee
Confidence 5678888776 999999999999998864 4678999999999999999999972 1 12356788
Q ss_pred EEeCCCCceeeCC-------CCCCcccceeeEEeCCeeeeecCc
Q psy14436 67 KYNPHTNTWLPIV-------AMTSRRSGLGPGSLQLTLPTLTSV 103 (133)
Q Consensus 67 ~yd~~~~~W~~~~-------~~~~~r~~~~~~~~~~~iy~~gG~ 103 (133)
+.++.+..|..+- ..|.+|++|++++++.++|+..|.
T Consensus 298 clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGR 341 (830)
T KOG4152|consen 298 CLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGR 341 (830)
T ss_pred eeeecchheeeeeeccccccccccccccceeEEeccEEEEEecc
Confidence 9999999999873 368899999999999999776664
No 30
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.38 E-value=1.9e-12 Score=67.16 Aligned_cols=47 Identities=30% Similarity=0.495 Sum_probs=42.5
Q ss_pred CCEEEEEecCC--CCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEe
Q psy14436 47 NNVIYAVGGRD--DSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL 93 (133)
Q Consensus 47 ~~~iyv~GG~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 93 (133)
+++|||+||.+ .....+++++||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 47899999998 566789999999999999999999999999999864
No 31
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.36 E-value=3.4e-12 Score=66.22 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=41.1
Q ss_pred cccceEEEEECCEEEEEecC---CCCCccCeEEEEeCCCCceeeCCCCC
Q psy14436 37 RRKHLGCAVFNNVIYAVGGR---DDSMELSSAEKYNPHTNTWLPIVAMT 82 (133)
Q Consensus 37 ~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~yd~~~~~W~~~~~~~ 82 (133)
+|..|++++++++||++||+ ......+++++||+.+++|++++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58889999999999999999 34566889999999999999998875
No 32
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.31 E-value=2.4e-12 Score=66.81 Aligned_cols=47 Identities=34% Similarity=0.513 Sum_probs=31.0
Q ss_pred cccceEEEEE-CCEEEEEecCCCC-CccCeEEEEeCCCCceeeCCCCCC
Q psy14436 37 RRKHLGCAVF-NNVIYAVGGRDDS-MELSSAEKYNPHTNTWLPIVAMTS 83 (133)
Q Consensus 37 ~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~~~ 83 (133)
||..|+++.+ ++.|||+||.+.. ...+++++||+.+++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6889999998 5899999999764 578999999999999999988873
No 33
>smart00612 Kelch Kelch domain.
Probab=99.14 E-value=1.2e-10 Score=59.39 Aligned_cols=46 Identities=37% Similarity=0.517 Sum_probs=40.6
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNN 48 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 48 (133)
+++.||..+...++++++||+.+++|..+++||.+|..++++++++
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 5678898776779999999999999999999999999998888764
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.10 E-value=2.2e-10 Score=59.37 Aligned_cols=43 Identities=23% Similarity=0.222 Sum_probs=38.8
Q ss_pred ceeccccc--CCeeecEEEEEeCCCCceeecCCCcccccceEEEE
Q psy14436 3 EDFNHGYR--ELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAV 45 (133)
Q Consensus 3 ~~~~GG~~--~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 45 (133)
.++.||.. +...++++|+||+.+++|++++++|.+|..|++++
T Consensus 4 ~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 4 LYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred EEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 46788888 67789999999999999999999999999999876
No 35
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.07 E-value=3.3e-10 Score=79.54 Aligned_cols=95 Identities=24% Similarity=0.361 Sum_probs=73.6
Q ss_pred cEEEEEeCCC--CceeecCCCc-ccccceEEEEECCEEEEEecCCC-----CCccCeEEEEeCCCCceeeCC-CCCCccc
Q psy14436 16 VSVERFDPKL--NRWTAMAPMS-TRRKHLGCAVFNNVIYAVGGRDD-----SMELSSAEKYNPHTNTWLPIV-AMTSRRS 86 (133)
Q Consensus 16 ~~~~~yd~~t--~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~yd~~~~~W~~~~-~~~~~r~ 86 (133)
.+.+..|.+. ..|+++.+-| .+|.....++++++||+|||... .+..+++++|||++++|+++. ..|....
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~ 137 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLV 137 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccc
Confidence 3455666644 5799998766 56888888899999999999853 234678999999999999986 4455667
Q ss_pred ceeeEEeCC-eeeeecCceEEEEeCC
Q psy14436 87 GLGPGSLQL-TLPTLTSVKFTYIIPG 111 (133)
Q Consensus 87 ~~~~~~~~~-~iy~~gG~~~~~v~gg 111 (133)
++.++.+++ ++|++||.+. .++++
T Consensus 138 G~~~~~~~~~~i~f~GGvn~-~if~~ 162 (381)
T COG3055 138 GASTFSLNGTKIYFFGGVNQ-NIFNG 162 (381)
T ss_pred cceeEecCCceEEEEccccH-Hhhhh
Confidence 788888887 9999999976 45544
No 36
>PF13854 Kelch_5: Kelch motif
Probab=98.94 E-value=3.5e-09 Score=52.98 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=35.0
Q ss_pred CcccccceEEEEECCEEEEEecCC--CCCccCeEEEEeCCCC
Q psy14436 34 MSTRRKHLGCAVFNNVIYAVGGRD--DSMELSSAEKYNPHTN 73 (133)
Q Consensus 34 ~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~~~ 73 (133)
+|.+|..|+++..+++||++||.. .....+++++||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 478999999999999999999998 4666889999998763
No 37
>PLN02772 guanylate kinase
Probab=98.94 E-value=1.2e-08 Score=73.66 Aligned_cols=66 Identities=12% Similarity=0.230 Sum_probs=56.0
Q ss_pred ccccceEEEEECCEEEEEecCCCCC-ccCeEEEEeCCCCceeeCC---CCCCcccceeeEEe-CCeeeeec
Q psy14436 36 TRRKHLGCAVFNNVIYAVGGRDDSM-ELSSAEKYNPHTNTWLPIV---AMTSRRSGLGPGSL-QLTLPTLT 101 (133)
Q Consensus 36 ~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~-~~~iy~~g 101 (133)
.++..+.++..++++||+||.++.. ..+.+++||+.+.+|.... ..|.+|.+|+++++ +++|+|++
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~ 93 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIK 93 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEe
Confidence 4788899999999999999987643 5779999999999998775 67889999999998 67995544
No 38
>KOG2437|consensus
Probab=98.75 E-value=5.6e-09 Score=76.56 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=79.4
Q ss_pred eecccccCCeeecEEEEEeCCCCceeecC---CCcccccceEEEEECC--EEEEEecCCC------CCccCeEEEEeCCC
Q psy14436 4 DFNHGYRELQLQVSVERFDPKLNRWTAMA---PMSTRRKHLGCAVFNN--VIYAVGGRDD------SMELSSAEKYNPHT 72 (133)
Q Consensus 4 ~~~GG~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~--~iyv~GG~~~------~~~~~~~~~yd~~~ 72 (133)
.+.||++|.+-+.+.|.|....+.|..+. ..|..|+.|.++..-+ +||++|-+-+ ....+++++||..+
T Consensus 276 YLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~ 355 (723)
T KOG2437|consen 276 YLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDT 355 (723)
T ss_pred EEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCC
Confidence 46799999999999999999999998874 4688899999998765 9999997632 12257899999999
Q ss_pred CceeeCC------CCCCcccceeeEEeCCe--eeeecCce
Q psy14436 73 NTWLPIV------AMTSRRSGLGPGSLQLT--LPTLTSVK 104 (133)
Q Consensus 73 ~~W~~~~------~~~~~r~~~~~~~~~~~--iy~~gG~~ 104 (133)
+.|.-+. --|.....|..++...+ +||+||..
T Consensus 356 ~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 356 NTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred ceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 9998875 12445667777777777 86666663
No 39
>PF13964 Kelch_6: Kelch motif
Probab=98.75 E-value=1.5e-08 Score=52.53 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=34.0
Q ss_pred cccceeeEEeCCeeeeecCceEEEEeCCCCc-cceeeeeeeecCCCCCccC
Q psy14436 84 RRSGLGPGSLQLTLPTLTSVKFTYIIPGDPA-ERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 84 ~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~-~~~~~~~~~~~~~~~~W~~ 133 (133)
+|..+++++++++| ||+||... ....++++.||+.+++|.+
T Consensus 1 pR~~~s~v~~~~~i---------yv~GG~~~~~~~~~~v~~yd~~t~~W~~ 42 (50)
T PF13964_consen 1 PRYGHSAVVVGGKI---------YVFGGYDNSGKYSNDVERYDPETNTWEQ 42 (50)
T ss_pred CCccCEEEEECCEE---------EEECCCCCCCCccccEEEEcCCCCcEEE
Confidence 58889999999999 66666554 6667899999999999974
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.74 E-value=1.1e-08 Score=52.34 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=33.9
Q ss_pred cccceeeEEeCCeeeeecCceEEEEeCCCCc-cceeeeeeeecCCCCCccC
Q psy14436 84 RRSGLGPGSLQLTLPTLTSVKFTYIIPGDPA-ERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 84 ~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~-~~~~~~~~~~~~~~~~W~~ 133 (133)
+|..+++++++++| |++||... .....+++.||+.+++|.+
T Consensus 1 pR~~~~~~~~~~~i---------yv~GG~~~~~~~~~~v~~yd~~~~~W~~ 42 (47)
T PF01344_consen 1 PRSGHAAVVVGNKI---------YVIGGYDGNNQPTNSVEVYDPETNTWEE 42 (47)
T ss_dssp -BBSEEEEEETTEE---------EEEEEBESTSSBEEEEEEEETTTTEEEE
T ss_pred CCccCEEEEECCEE---------EEEeeecccCceeeeEEEEeCCCCEEEE
Confidence 58899999999999 66666554 7778899999999999974
No 41
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.60 E-value=1.7e-07 Score=66.20 Aligned_cols=92 Identities=21% Similarity=0.274 Sum_probs=69.0
Q ss_pred CeeecEEEEEeCCCCceeecCC-CcccccceEEEEECC-EEEEEecCCC---------------C---------------
Q psy14436 12 LQLQVSVERFDPKLNRWTAMAP-MSTRRKHLGCAVFNN-VIYAVGGRDD---------------S--------------- 59 (133)
Q Consensus 12 ~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~-~iyv~GG~~~---------------~--------------- 59 (133)
.+..+++++|||.+|+|.++.. .|.....+.++.+++ +||++||.+. .
T Consensus 109 ~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~ 188 (381)
T COG3055 109 PQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKK 188 (381)
T ss_pred ceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCC
Confidence 3568999999999999999874 455667788888887 9999999631 0
Q ss_pred ----CccCeEEEEeCCCCceeeCCCCC-CcccceeeEEeCCeeeeecCc
Q psy14436 60 ----MELSSAEKYNPHTNTWLPIVAMT-SRRSGLGPGSLQLTLPTLTSV 103 (133)
Q Consensus 60 ----~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iy~~gG~ 103 (133)
....++..|||++++|+.+...| .++++.+.+.-++++.++.|.
T Consensus 189 ~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGE 237 (381)
T COG3055 189 AEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGE 237 (381)
T ss_pred HHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcce
Confidence 01346789999999999988555 466665555567778666664
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.60 E-value=8.9e-08 Score=49.42 Aligned_cols=44 Identities=11% Similarity=-0.004 Sum_probs=34.6
Q ss_pred cccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 84 RRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 84 ~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
+|..|++++++++||++||. +........++++.||+.++.|.+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~------~~~~~~~~~~~v~~~d~~t~~W~~ 44 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGY------GTDNGGSSSNDVWVFDTETNQWTE 44 (49)
T ss_pred CccceEEEEECCEEEEECCc------ccCCCCcccceeEEEECCCCEEee
Confidence 58899999999999666554 122556667789999999999974
No 43
>PF13854 Kelch_5: Kelch motif
Probab=98.36 E-value=1.4e-06 Score=43.47 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=30.6
Q ss_pred CCCcccceeeEEeCCeeeeecCceEEEEeCCCC--ccceeeeeeeecCCCC
Q psy14436 81 MTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDP--AERLKFTREEKEPPHM 129 (133)
Q Consensus 81 ~~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~--~~~~~~~~~~~~~~~~ 129 (133)
+|.+|..|++++++++| |++||.. .....++++.++..++
T Consensus 1 ~P~~R~~hs~~~~~~~i---------yi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNI---------YIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEE---------EEEcCccCCCCCEECcEEEEECCCC
Confidence 47899999999999999 5555544 4566678888887653
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.35 E-value=3.4e-07 Score=47.13 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=25.9
Q ss_pred cccceeeEEe-CCeeeeecCceEEEEeCCCCcc-ceeeeeeeecCCCCCccC
Q psy14436 84 RRSGLGPGSL-QLTLPTLTSVKFTYIIPGDPAE-RLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 84 ~r~~~~~~~~-~~~iy~~gG~~~~~v~gg~~~~-~~~~~~~~~~~~~~~W~~ 133 (133)
+|..|+++.+ ++++ |++||.... ...++++.||+.+++|.+
T Consensus 1 pR~~h~~~~~~~~~i---------~v~GG~~~~~~~~~d~~~~d~~~~~W~~ 43 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSI---------YVFGGRDSSGSPLNDLWIFDIETNTWTR 43 (49)
T ss_dssp --BS-EEEEE-TTEE---------EEE--EEE-TEE---EEEEETTTTEEEE
T ss_pred CcceEEEEEEeCCeE---------EEECCCCCCCcccCCEEEEECCCCEEEE
Confidence 5889999998 5899 555554443 577799999999999974
No 45
>KOG2437|consensus
Probab=98.33 E-value=2e-07 Score=68.64 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=79.0
Q ss_pred CCceeecCC----------CcccccceEEEEECC--EEEEEecCCCCCccCeEEEEeCCCCceeeCC---CCCCccccee
Q psy14436 25 LNRWTAMAP----------MSTRRKHLGCAVFNN--VIYAVGGRDDSMELSSAEKYNPHTNTWLPIV---AMTSRRSGLG 89 (133)
Q Consensus 25 t~~W~~~~~----------~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~ 89 (133)
+..|.+++. -|..|.+|.++...+ +||+.||+++-+.+.+++.|+...+.|..+. ..|..|.-|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 457877652 345689999999865 9999999999888999999999999999874 4678888888
Q ss_pred eEEeCC--eeeeecCceEEEEeCC-CCccceeeeeeeecCCCCCcc
Q psy14436 90 PGSLQL--TLPTLTSVKFTYIIPG-DPAERLKFTREEKEPPHMYWY 132 (133)
Q Consensus 90 ~~~~~~--~iy~~gG~~~~~v~gg-~~~~~~~~~~~~~~~~~~~W~ 132 (133)
.+..-. |+|++|-. +... .......++.++||..++.|.
T Consensus 318 MVid~S~~KLYLlG~Y----~~sS~r~~~s~RsDfW~FDi~~~~W~ 359 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRY----LDSSVRNSKSLRSDFWRFDIDTNTWM 359 (723)
T ss_pred hhhhhhHhHHhhhhhc----cccccccccccccceEEEecCCceeE
Confidence 876644 99888853 2211 222234567889999888884
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.24 E-value=4.9e-06 Score=56.84 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=63.0
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEE-ECCEEEEEecCCCCCccCeEEEEeCCC----CceeeCC-CCCCcccce
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAV-FNNVIYAVGGRDDSMELSSAEKYNPHT----NTWLPIV-AMTSRRSGL 88 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~-~~~~~r~~~ 88 (133)
...-..||+.+++++.+.. +..-.+.+-+. -++.+++.||... -...+..|+|.. ..|.+.+ .|..+|.++
T Consensus 45 ~a~s~~yD~~tn~~rpl~v-~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp 121 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTV-QTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP 121 (243)
T ss_pred eEEEEEEecCCCcEEeccC-CCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccc
Confidence 3445679999999988763 22222222222 3789999999754 235677788875 6798886 589999999
Q ss_pred eeEEe-CCeeeeecCceE
Q psy14436 89 GPGSL-QLTLPTLTSVKF 105 (133)
Q Consensus 89 ~~~~~-~~~iy~~gG~~~ 105 (133)
++..+ ||+++|+||...
T Consensus 122 T~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNN 139 (243)
T ss_pred cceECCCCCEEEEeCcCC
Confidence 99988 789988888763
No 47
>PLN02772 guanylate kinase
Probab=98.06 E-value=2.8e-05 Score=56.50 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=49.6
Q ss_pred ceecccccCCe-eecEEEEEeCCCCceeecC---CCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCC
Q psy14436 3 EDFNHGYRELQ-LQVSVERFDPKLNRWTAMA---PMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPH 71 (133)
Q Consensus 3 ~~~~GG~~~~~-~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~ 71 (133)
.++.||.+... ..+.+++||..|.+|.... ..|.+|.+|+++.+ +++|+|+++.... ..++|.....
T Consensus 37 ~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--~~~~w~l~~~ 108 (398)
T PLN02772 37 TYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--DDSIWFLEVD 108 (398)
T ss_pred EEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--ccceEEEEcC
Confidence 45677776543 6899999999999997753 77899999999998 4799999875432 2455544433
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.02 E-value=0.00016 Score=49.03 Aligned_cols=84 Identities=8% Similarity=0.071 Sum_probs=54.6
Q ss_pred cEEEEEeCCCCceeecCCCccc-ccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcc----cceee
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTR-RKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRR----SGLGP 90 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r----~~~~~ 90 (133)
..+++|+..++.|+.+...+.. ......+.+++.||-+...........+.+||..+++|.+.-++|..+ ....+
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L 149 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSL 149 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEE
Confidence 5778999999999998743322 112226678999998764322112237999999999999522344332 23456
Q ss_pred EEeCCeeee
Q psy14436 91 GSLQLTLPT 99 (133)
Q Consensus 91 ~~~~~~iy~ 99 (133)
+.++|+|.+
T Consensus 150 ~~~~G~L~~ 158 (230)
T TIGR01640 150 INYKGKLAV 158 (230)
T ss_pred EEECCEEEE
Confidence 677888843
No 49
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.84 E-value=0.00023 Score=49.43 Aligned_cols=101 Identities=10% Similarity=-0.034 Sum_probs=70.5
Q ss_pred eeccccc-CCeeecEEEEEeCCCCceee-----------cCCCcccccceEEEEEC----CEEEEEecCCC---CC----
Q psy14436 4 DFNHGYR-ELQLQVSVERFDPKLNRWTA-----------MAPMSTRRKHLGCAVFN----NVIYAVGGRDD---SM---- 60 (133)
Q Consensus 4 ~~~GG~~-~~~~~~~~~~yd~~t~~W~~-----------~~~~p~~r~~~~~~~~~----~~iyv~GG~~~---~~---- 60 (133)
|+.||.. +....+.+|.....+....+ +.+.|.+|++|.+.++. ...++|||++= .+
T Consensus 42 lIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTe 121 (337)
T PF03089_consen 42 LIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTE 121 (337)
T ss_pred EecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchh
Confidence 6778876 45567777776665543211 35889999999987762 25778899741 11
Q ss_pred -------ccCeEEEEeCCCCcee--eCCCCCCcccceeeEEeCCeeeeecCce
Q psy14436 61 -------ELSSAEKYNPHTNTWL--PIVAMTSRRSGLGPGSLQLTLPTLTSVK 104 (133)
Q Consensus 61 -------~~~~~~~yd~~~~~W~--~~~~~~~~r~~~~~~~~~~~iy~~gG~~ 104 (133)
..-.|+..|++-+-.+ .+|.+......|.+.+-++.+|++||..
T Consensus 122 nWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 122 NWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred hcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence 1235677788777553 5677778888999999999999999974
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.56 E-value=0.0026 Score=43.05 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=51.4
Q ss_pred cEEEEEeCCCCceeecCCCccccc---ce-EEEEEC----C-EEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCc-c
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRK---HL-GCAVFN----N-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSR-R 85 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~---~~-~~~~~~----~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r 85 (133)
..+.++||.|++|..+|+++.++. .+ .....+ . +|..+...........+++|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 578899999999999986544211 11 111122 1 555554432122346789999999999998743321 1
Q ss_pred cceeeEEeCCeeeeec
Q psy14436 86 SGLGPGSLQLTLPTLT 101 (133)
Q Consensus 86 ~~~~~~~~~~~iy~~g 101 (133)
.....+.++|.+|-+.
T Consensus 94 ~~~~~v~~~G~lyw~~ 109 (230)
T TIGR01640 94 LKSRGVCINGVLYYLA 109 (230)
T ss_pred ccCCeEEECCEEEEEE
Confidence 1222667788885543
No 51
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.34 E-value=0.0055 Score=43.04 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=51.3
Q ss_pred eeccccc---CCeeecEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCC-ccCeEEEEeCCCCceeeC
Q psy14436 4 DFNHGYR---ELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSM-ELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 4 ~~~GG~~---~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~ 78 (133)
|++||.- +.-.-..+-.||+.+.+|..+..--... -..+... +++||+.|-..... ....+..||..+.+|..+
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~ 79 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSL 79 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeec
Confidence 4566663 2224677888999999999987532222 1233333 67888877654333 567899999999999888
Q ss_pred CC
Q psy14436 79 VA 80 (133)
Q Consensus 79 ~~ 80 (133)
+.
T Consensus 80 ~~ 81 (281)
T PF12768_consen 80 GG 81 (281)
T ss_pred CC
Confidence 75
No 52
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.19 E-value=0.017 Score=41.76 Aligned_cols=69 Identities=9% Similarity=0.082 Sum_probs=46.2
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCcc-----CeEEEE--eC--------CCCceeeCCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMEL-----SSAEKY--NP--------HTNTWLPIVA 80 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~-----~~~~~y--d~--------~~~~W~~~~~ 80 (133)
....+||..+..-...|.++.+.....++.+++.||++......... ..+|++ ++ ..-.|+.+|+
T Consensus 86 ~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~ 165 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPP 165 (342)
T ss_pred CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCC
Confidence 34779999999998888887777666677788899999876422111 144444 42 2236888886
Q ss_pred CCCc
Q psy14436 81 MTSR 84 (133)
Q Consensus 81 ~~~~ 84 (133)
.|-.
T Consensus 166 PPf~ 169 (342)
T PF07893_consen 166 PPFV 169 (342)
T ss_pred CCcc
Confidence 5543
No 53
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=96.35 E-value=0.036 Score=38.15 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=39.0
Q ss_pred ceecccccCCeeecEEEEEeCCC----CceeecC-CCcccccceEEEEE-CCEEEEEecCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKL----NRWTAMA-PMSTRRKHLGCAVF-NNVIYAVGGRD 57 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t----~~W~~~~-~~p~~r~~~~~~~~-~~~iyv~GG~~ 57 (133)
.|.+||.... ...+-.|++.+ ..|.+.+ .|..+|...++..+ ++.++|+||..
T Consensus 80 ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 80 LLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred EEEeCCCCcc--ccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC
Confidence 3567777532 34455677754 6798876 58999999888887 68999999975
No 54
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=95.94 E-value=0.12 Score=31.86 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=38.1
Q ss_pred EEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCC---CCCcccceeeEEeCCee
Q psy14436 44 AVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA---MTSRRSGLGPGSLQLTL 97 (133)
Q Consensus 44 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~i 97 (133)
+.++|.||-..-. .......+.+||..+++|+.++. .........++.++|+|
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L 57 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKL 57 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeE
Confidence 3568888876554 23346789999999999987753 23445667777889988
No 55
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.31 E-value=0.32 Score=33.91 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=63.2
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQ 94 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 94 (133)
.+.+..+|+.|++-.+..++|..-.+=+++.++++||.+-=. ...+.+||+.+ .+++...+.+..+-+++..+
T Consensus 67 ~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~t--l~~~~~~~y~~EGWGLt~dg 139 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNT--LKKIGTFPYPGEGWGLTSDG 139 (264)
T ss_dssp EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTT--TEEEEEEE-SSS--EEEECS
T ss_pred cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-----CCeEEEEcccc--ceEEEEEecCCcceEEEcCC
Confidence 578889999999887766777777778899999999988432 36789999975 45555555556777888888
Q ss_pred CeeeeecCceEEEEeCC
Q psy14436 95 LTLPTLTSVKFTYIIPG 111 (133)
Q Consensus 95 ~~iy~~gG~~~~~v~gg 111 (133)
..+++-.|+..++...-
T Consensus 140 ~~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 140 KRLIMSDGSSRLYFLDP 156 (264)
T ss_dssp SCEEEE-SSSEEEEE-T
T ss_pred CEEEEECCccceEEECC
Confidence 88988888877666543
No 56
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=94.60 E-value=1.1 Score=31.82 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=30.7
Q ss_pred ecEEEEEeCCCCceee--cCCCcccccceEEEEECCEEEEEecCC
Q psy14436 15 QVSVERFDPKLNRWTA--MAPMSTRRKHLGCAVFNNVIYAVGGRD 57 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~ 57 (133)
.-.|+..|++-+-... +|.+....+.|.+.+-++.+|++||..
T Consensus 130 ~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 130 PPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred CCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence 3456677776655533 455556677788888899999999974
No 57
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.13 E-value=1.2 Score=27.33 Aligned_cols=67 Identities=7% Similarity=0.021 Sum_probs=44.2
Q ss_pred eeecEEEEEeCCCCceeecCCC---cccccceEEEEECCEEEEEecCCCC-CccCeEEEE-eCCCCceeeCC
Q psy14436 13 QLQVSVERFDPKLNRWTAMAPM---STRRKHLGCAVFNNVIYAVGGRDDS-MELSSAEKY-NPHTNTWLPIV 79 (133)
Q Consensus 13 ~~~~~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~y-d~~~~~W~~~~ 79 (133)
...+.+.+||..+++|..++.+ .........+.++|+|-++.-.... ...-++++. |..+.+|.+..
T Consensus 17 ~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~ 88 (129)
T PF08268_consen 17 SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKH 88 (129)
T ss_pred CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEE
Confidence 3457789999999999887642 2334556677789998887554322 123455555 56678898653
No 58
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.90 E-value=3.8 Score=30.04 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=45.1
Q ss_pred cEEEEEeCCCCc--eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCcccceeeE
Q psy14436 16 VSVERFDPKLNR--WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSRRSGLGPG 91 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~ 91 (133)
..++++|+.+.+ |..-. + ..+...+.+..++.||+... ...+.++|+.+++ |+. .++......+.+
T Consensus 304 g~l~ald~~tG~~~W~~~~-~-~~~~~~sp~v~~g~l~v~~~------~G~l~~ld~~tG~~~~~~--~~~~~~~~s~P~ 373 (394)
T PRK11138 304 DRVYALDTRGGVELWSQSD-L-LHRLLTAPVLYNGYLVVGDS------EGYLHWINREDGRFVAQQ--KVDSSGFLSEPV 373 (394)
T ss_pred CeEEEEECCCCcEEEcccc-c-CCCcccCCEEECCEEEEEeC------CCEEEEEECCCCCEEEEE--EcCCCcceeCCE
Confidence 457788887754 64321 1 12222334556888876432 1367888988875 543 122222344566
Q ss_pred EeCCeeeeecCceEEE
Q psy14436 92 SLQLTLPTLTSVKFTY 107 (133)
Q Consensus 92 ~~~~~iy~~gG~~~~~ 107 (133)
+.+++||+..-...+|
T Consensus 374 ~~~~~l~v~t~~G~l~ 389 (394)
T PRK11138 374 VADDKLLIQARDGTVY 389 (394)
T ss_pred EECCEEEEEeCCceEE
Confidence 7888886654433333
No 59
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.93 E-value=4.5 Score=28.99 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=45.5
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCce--eeCCCC------C-Ccccc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW--LPIVAM------T-SRRSG 87 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~------~-~~r~~ 87 (133)
-+|..|.++++-+++..-|..+ .+..++-.+|-+ ..-..-.+.++++|+.+++| +..+.- + ..|..
T Consensus 132 Gvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~ 206 (339)
T PF09910_consen 132 GVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPEL 206 (339)
T ss_pred eeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeecc
Confidence 3667777777777766544443 233344444433 22344578999999999999 443311 1 12333
Q ss_pred eeeEEeCCeeeee
Q psy14436 88 LGPGSLQLTLPTL 100 (133)
Q Consensus 88 ~~~~~~~~~iy~~ 100 (133)
..++...+++|.|
T Consensus 207 G~~~s~ynR~faF 219 (339)
T PF09910_consen 207 GAMASAYNRLFAF 219 (339)
T ss_pred ccEEEEeeeEEEE
Confidence 4455667777663
No 60
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.92 E-value=2.3 Score=30.30 Aligned_cols=84 Identities=10% Similarity=0.013 Sum_probs=56.3
Q ss_pred cEEEEEeCCCC-----ceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc-eeeCCCCCCccccee
Q psy14436 16 VSVERFDPKLN-----RWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT-WLPIVAMTSRRSGLG 89 (133)
Q Consensus 16 ~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~~ 89 (133)
-.+..|+..+. +.+.+...+....-.+++.+++.|.+.-| +.+..|+...++ +.+.+.+..+-...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDSPFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-BSSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheecceEEEEE
Confidence 56888888875 55555544444455677788998776655 678888888888 888776655555566
Q ss_pred eEEeCCeeeeecCceEE
Q psy14436 90 PGSLQLTLPTLTSVKFT 106 (133)
Q Consensus 90 ~~~~~~~iy~~gG~~~~ 106 (133)
+.++++.|++-.-..+.
T Consensus 135 l~~~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 135 LSVFKNYILVGDAMKSV 151 (321)
T ss_dssp EEEETTEEEEEESSSSE
T ss_pred EeccccEEEEEEcccCE
Confidence 66778877655544443
No 61
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.67 E-value=1.4 Score=31.17 Aligned_cols=62 Identities=10% Similarity=0.018 Sum_probs=34.3
Q ss_pred cCeEEEEeCCCCceeeCCCCCCcccceeeEEe-CCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCcc
Q psy14436 62 LSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL-QLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWY 132 (133)
Q Consensus 62 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~ 132 (133)
...+..||+.+.+|..+..--... -..+... ++++|+.|- +...+. .....-.||.....|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~----ft~~~~----~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGN----FTLNGT----NSSNLATYDFKNQTWS 77 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEe----eEECCC----CceeEEEEecCCCeee
Confidence 567899999999999986442221 1223223 556644332 111121 2234556777777663
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=90.15 E-value=4.6 Score=29.32 Aligned_cols=54 Identities=17% Similarity=0.063 Sum_probs=42.2
Q ss_pred ECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeCCeeeeecCceE
Q psy14436 46 FNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSVKF 105 (133)
Q Consensus 46 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~ 105 (133)
.+++|+.++.. ..+..||+.+..-..+|.++.+.....++.++++||++...-.
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~ 128 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPF 128 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCc
Confidence 37888888553 4488999999998888888877777777888999977766543
No 63
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.44 E-value=6.8 Score=28.75 Aligned_cols=83 Identities=16% Similarity=0.069 Sum_probs=51.3
Q ss_pred cEEEEEeCCCCc--eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCcccceeeE
Q psy14436 16 VSVERFDPKLNR--WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSRRSGLGPG 91 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~ 91 (133)
..++++|+.+++ |+.-. ... ...+..++.||+... ...+.++|+.+++ |+.-. ...+...+.+
T Consensus 266 g~l~ald~~tG~~~W~~~~--~~~---~~~~~~~~~vy~~~~------~g~l~ald~~tG~~~W~~~~--~~~~~~~sp~ 332 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREY--GSV---NDFAVDGGRIYLVDQ------NDRVYALDTRGGVELWSQSD--LLHRLLTAPV 332 (394)
T ss_pred CeEEEEECCCCCEEEeecC--CCc---cCcEEECCEEEEEcC------CCeEEEEECCCCcEEEcccc--cCCCcccCCE
Confidence 468899998865 76521 111 134567889998643 2568899998774 75421 1223334556
Q ss_pred EeCCeeeeecCceEEEEeCC
Q psy14436 92 SLQLTLPTLTSVKFTYIIPG 111 (133)
Q Consensus 92 ~~~~~iy~~gG~~~~~v~gg 111 (133)
+.++++|+......++++.-
T Consensus 333 v~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 333 LYNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred EECCEEEEEeCCCEEEEEEC
Confidence 67899988766555555543
No 64
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.14 E-value=3.8 Score=27.83 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=36.8
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
-..++++|+.+++-....... ..+++.. ++.+|+... ..+..+|+.+++++.+...
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeec
Confidence 357889999887765543222 3445555 678888754 2345569999988877654
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.45 E-value=9 Score=27.78 Aligned_cols=43 Identities=9% Similarity=-0.144 Sum_probs=21.9
Q ss_pred CeEEEEeCCCCc--eeeCCCCCCcccceeeEEeCCeeeeecCceEEE
Q psy14436 63 SSAEKYNPHTNT--WLPIVAMTSRRSGLGPGSLQLTLPTLTSVKFTY 107 (133)
Q Consensus 63 ~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~ 107 (133)
..+.++|+.+++ |+. +++......+.+..+++||+.+-...+|
T Consensus 330 G~l~~~d~~tG~~~~~~--~~~~~~~~~sp~~~~~~l~v~~~dG~l~ 374 (377)
T TIGR03300 330 GYLHWLSREDGSFVARL--KTDGSGIASPPVVVGDGLLVQTRDGDLY 374 (377)
T ss_pred CEEEEEECCCCCEEEEE--EcCCCccccCCEEECCEEEEEeCCceEE
Confidence 356777776664 322 1222223345567777775544443333
No 66
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=86.56 E-value=10 Score=27.50 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=44.2
Q ss_pred cEEEEEeCCCCc--eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCcccceeeE
Q psy14436 16 VSVERFDPKLNR--WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSRRSGLGPG 91 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~ 91 (133)
..+++||..+++ |+.--. . ......+..++.+|+. .. ...+.++|+.+++ |+.-.+ .. .....+
T Consensus 75 g~v~a~d~~tG~~~W~~~~~--~-~~~~~p~v~~~~v~v~-~~-----~g~l~ald~~tG~~~W~~~~~--~~-~~~~p~ 142 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLD--E-RLSGGVGADGGLVFVG-TE-----KGEVIALDAEDGKELWRAKLS--SE-VLSPPL 142 (377)
T ss_pred CeEEEEEccCCcEeeeecCC--C-CcccceEEcCCEEEEE-cC-----CCEEEEEECCCCcEeeeeccC--ce-eecCCE
Confidence 468999988765 754321 1 1122344556777764 32 2578999987764 865322 11 112334
Q ss_pred EeCCeeeeecCceEEEEe
Q psy14436 92 SLQLTLPTLTSVKFTYII 109 (133)
Q Consensus 92 ~~~~~iy~~gG~~~~~v~ 109 (133)
..++++|+..+...++.+
T Consensus 143 v~~~~v~v~~~~g~l~a~ 160 (377)
T TIGR03300 143 VANGLVVVRTNDGRLTAL 160 (377)
T ss_pred EECCEEEEECCCCeEEEE
Confidence 456666665444433444
No 67
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.38 E-value=6.4 Score=27.65 Aligned_cols=60 Identities=27% Similarity=0.181 Sum_probs=44.1
Q ss_pred eEEEE-ECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeCCeeeeecCc
Q psy14436 41 LGCAV-FNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSV 103 (133)
Q Consensus 41 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~ 103 (133)
.+... .++.||.--|..+ .+.+.++|+.+++-.+-.++|..-.+-+++.++++||.+.--
T Consensus 48 QGL~~~~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk 108 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYG---QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK 108 (264)
T ss_dssp EEEEEEETTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS
T ss_pred ccEEecCCCEEEEeCCCCC---cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec
Confidence 34455 5788988766543 378999999999877667788877888999999999887754
No 68
>KOG1036|consensus
Probab=81.72 E-value=17 Score=26.14 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=31.5
Q ss_pred CceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 2 NEDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 2 ~~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
|++++||++. .+.++|+....- ......+..-+++.+.++.| |+|+.+ ..+..||+.+..
T Consensus 107 ~~vIsgsWD~-----~ik~wD~R~~~~--~~~~d~~kkVy~~~v~g~~L-vVg~~~-----r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 107 GCVISGSWDK-----TIKFWDPRNKVV--VGTFDQGKKVYCMDVSGNRL-VVGTSD-----RKVLIYDLRNLD 166 (323)
T ss_pred CeEEEcccCc-----cEEEEecccccc--ccccccCceEEEEeccCCEE-EEeecC-----ceEEEEEccccc
Confidence 5677777754 456777765111 11112222334444445555 455532 578888887653
No 69
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=81.36 E-value=13 Score=24.68 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=51.2
Q ss_pred cEEEEEeCCCCc--eeecCCCcccccceE--EEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCccccee
Q psy14436 16 VSVERFDPKLNR--WTAMAPMSTRRKHLG--CAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSRRSGLG 89 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~ 89 (133)
..+.++|+.+++ |+.-. ..+..... .+..++.+|+..+ ...+.++|+.+++ |+.-. +.+... .
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~-~ 71 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISG-A 71 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGS-G
T ss_pred CEEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccc-e
Confidence 357789987765 65522 11222222 3336888888743 3689999998875 65533 222221 2
Q ss_pred eEEeCCeeeeecCceEEEEeCCCCc
Q psy14436 90 PGSLQLTLPTLTSVKFTYIIPGDPA 114 (133)
Q Consensus 90 ~~~~~~~iy~~gG~~~~~v~gg~~~ 114 (133)
....++++|+......++.+.-.++
T Consensus 72 ~~~~~~~v~v~~~~~~l~~~d~~tG 96 (238)
T PF13360_consen 72 PVVDGGRVYVGTSDGSLYALDAKTG 96 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTS
T ss_pred eeecccccccccceeeeEecccCCc
Confidence 4677888877765545555553333
No 70
>KOG0316|consensus
Probab=81.33 E-value=16 Score=25.55 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=51.3
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEEC--CEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEe
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFN--NVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL 93 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 93 (133)
..++.||..|++-.+.- -.+......+.++ ..+.+-|+++ .++.++|..++.-+.+.-+...+..-..+.+
T Consensus 81 k~v~vwDV~TGkv~Rr~--rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF--RGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred ceEEEEEcccCeeeeec--ccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCccchhhhhcCceeEEEe
Confidence 45778999887764421 1112222334444 3566666654 6789999999998888878888888788878
Q ss_pred CCeeee
Q psy14436 94 QLTLPT 99 (133)
Q Consensus 94 ~~~iy~ 99 (133)
.+..++
T Consensus 154 ~~heIv 159 (307)
T KOG0316|consen 154 AEHEIV 159 (307)
T ss_pred cccEEE
Confidence 777633
No 71
>KOG2055|consensus
Probab=78.73 E-value=23 Score=27.04 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=39.8
Q ss_pred eecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEE-E-ECCE-EEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 4 DFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCA-V-FNNV-IYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 4 ~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~-~-~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
++++|.++ .-.++..|-+++. .+-++-..+..-..+ . -++. ..+++|+ ..-++.||..+.+-+++.+
T Consensus 228 llvaG~d~---~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~k~~~ 297 (514)
T KOG2055|consen 228 LLVAGLDG---TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVTKLKP 297 (514)
T ss_pred EEEecCCC---cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccccccC
Confidence 56666665 4467777777776 333332222221112 1 2444 6666664 2568899999998888865
Q ss_pred C
Q psy14436 81 M 81 (133)
Q Consensus 81 ~ 81 (133)
+
T Consensus 298 ~ 298 (514)
T KOG2055|consen 298 P 298 (514)
T ss_pred C
Confidence 4
No 72
>KOG2321|consensus
Probab=76.86 E-value=6.5 Score=30.69 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=34.0
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEEC--CEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFN--NVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
-.++|++|...++|-.--....+-. -++.++ ..|+.+|+-+ ..|+.+||.+.+
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~l--N~v~in~~hgLla~Gt~~-----g~VEfwDpR~ks 208 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGEL--NVVSINEEHGLLACGTED-----GVVEFWDPRDKS 208 (703)
T ss_pred CcceEEEEccccccccccccccccc--eeeeecCccceEEecccC-----ceEEEecchhhh
Confidence 5689999999999955322222222 233332 4677888843 678889998775
No 73
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=76.01 E-value=35 Score=26.51 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=44.2
Q ss_pred cEEEEEeCCCCc--eeecCCCccc--------ccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCC-CCC
Q psy14436 16 VSVERFDPKLNR--WTAMAPMSTR--------RKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIV-AMT 82 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~-~~~ 82 (133)
..++++|.+|.+ |+.-...+.. ....+.+..+++||+... ...+.++|..+++ |+.-. ...
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l~ALDa~TGk~~W~~~~~~~~ 152 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARLVALDAKTGKVVWSKKNGDYK 152 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEEEEEECCCCCEEeeccccccc
Confidence 468899998754 7654322211 111234566778876322 2468999998885 76432 221
Q ss_pred C-cccceeeEEeCCeeeee
Q psy14436 83 S-RRSGLGPGSLQLTLPTL 100 (133)
Q Consensus 83 ~-~r~~~~~~~~~~~iy~~ 100 (133)
. .....+.++.++++|+-
T Consensus 153 ~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 153 AGYTITAAPLVVKGKVITG 171 (527)
T ss_pred ccccccCCcEEECCEEEEe
Confidence 1 11223455678887653
No 74
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=75.76 E-value=20 Score=23.74 Aligned_cols=87 Identities=16% Similarity=0.080 Sum_probs=47.9
Q ss_pred ecEEEEEeCCCCc--eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--ee-eCCCCCCc--ccc
Q psy14436 15 QVSVERFDPKLNR--WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WL-PIVAMTSR--RSG 87 (133)
Q Consensus 15 ~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~-~~~~~~~~--r~~ 87 (133)
...++++|..+++ |+.-. +.+.. ......++.||+... ...+.++|..+++ |+ .....+.. +..
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~--~~~~~-~~~~~~~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 115 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDL--PGPIS-GAPVVDGGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSS 115 (238)
T ss_dssp TSEEEEEETTTSEEEEEEEC--SSCGG-SGEEEETTEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--
T ss_pred CCEEEEEECCCCCEEEEeec--ccccc-ceeeecccccccccc------eeeeEecccCCcceeeeeccccccccccccc
Confidence 4678999998876 54432 22211 124777889988752 1379999987774 87 34332221 222
Q ss_pred eeeEEeCCeeeeecCceEEEEeC
Q psy14436 88 LGPGSLQLTLPTLTSVKFTYIIP 110 (133)
Q Consensus 88 ~~~~~~~~~iy~~gG~~~~~v~g 110 (133)
....+.++.+|+......++++-
T Consensus 116 ~~~~~~~~~~~~~~~~g~l~~~d 138 (238)
T PF13360_consen 116 SSPAVDGDRLYVGTSSGKLVALD 138 (238)
T ss_dssp SEEEEETTEEEEEETCSEEEEEE
T ss_pred cCceEecCEEEEEeccCcEEEEe
Confidence 33334456665555343334443
No 75
>KOG0316|consensus
Probab=74.39 E-value=16 Score=25.53 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=40.7
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.++-+||.+++.-+++.-+...+.....+.+.++.++.|..+ ..+..||...++-
T Consensus 123 ~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~D-----GtvRtydiR~G~l 177 (307)
T KOG0316|consen 123 SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVD-----GTVRTYDIRKGTL 177 (307)
T ss_pred ceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccC-----CcEEEEEeeccee
Confidence 456789998888887777777888877888888888877654 3566777766653
No 76
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=72.84 E-value=42 Score=26.04 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=43.1
Q ss_pred ecEEEEEeCCCCc--eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCc-cccee
Q psy14436 15 QVSVERFDPKLNR--WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSR-RSGLG 89 (133)
Q Consensus 15 ~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~-r~~~~ 89 (133)
...+..+|+.|.+ |+.-... +.... .....+.++++|..+ ..+.+||..|++ |+. .++.. .....
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~--p~~~~-~l~t~g~lvf~g~~~-----G~l~a~D~~TGe~lw~~--~~g~~~~a~P~ 509 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDF--PLWGG-VLATAGDLVFYGTLE-----GYFKAFDAKTGEELWKF--KTGSGIVGPPV 509 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCC--CCCCc-ceEECCcEEEEECCC-----CeEEEEECCCCCEeEEE--eCCCCceecCE
Confidence 4568899998874 7554332 22222 233344455555432 479999999985 754 33322 22233
Q ss_pred eEEeCCeeee
Q psy14436 90 PGSLQLTLPT 99 (133)
Q Consensus 90 ~~~~~~~iy~ 99 (133)
.-..+|+.|+
T Consensus 510 ty~~~G~qYv 519 (527)
T TIGR03075 510 TYEQDGKQYV 519 (527)
T ss_pred EEEeCCEEEE
Confidence 3347899877
No 77
>KOG2055|consensus
Probab=71.81 E-value=21 Score=27.24 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=44.0
Q ss_pred ecEEEEEeCCCCceeecCCCcc--cccceE-EEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeE
Q psy14436 15 QVSVERFDPKLNRWTAMAPMST--RRKHLG-CAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPG 91 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~--~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 91 (133)
-.-++.||.++.+-.++.++-. .+.... -++.++.++++-|.. .-+......|+.|..--.++.....+...
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lLhakT~eli~s~KieG~v~~~~fs 353 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLLHAKTKELITSFKIEGVVSDFTFS 353 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEeehhhhhhhhheeeeccEEeeEEEe
Confidence 3557899999998888764321 122222 233455566666643 23444555666664322233222222222
Q ss_pred EeCCeeeeecCceEEEE
Q psy14436 92 SLQLTLPTLTSVKFTYI 108 (133)
Q Consensus 92 ~~~~~iy~~gG~~~~~v 108 (133)
....+|++.||....++
T Consensus 354 Sdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 354 SDSKELLASGGTGEVYV 370 (514)
T ss_pred cCCcEEEEEcCCceEEE
Confidence 23345555555444333
No 78
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.50 E-value=26 Score=25.13 Aligned_cols=59 Identities=14% Similarity=0.363 Sum_probs=37.4
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
.-.++.|||.+-.|.+-+ +|......-...+ .+.+++- .-....+.+|||.+.+.+.++
T Consensus 253 ~g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred CceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEee-----ccccCceeecCcccceEEEec
Confidence 456889999999998754 3333222222223 3455542 112467899999999988764
No 79
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=70.21 E-value=36 Score=24.20 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=37.7
Q ss_pred ceEEEEECCEEEEEe-cCCCCCccCeEEEEeCCCCceeeCC-CCCCcccceeeEEeCCeeeeecCce
Q psy14436 40 HLGCAVFNNVIYAVG-GRDDSMELSSAEKYNPHTNTWLPIV-AMTSRRSGLGPGSLQLTLPTLTSVK 104 (133)
Q Consensus 40 ~~~~~~~~~~iyv~G-G~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~iy~~gG~~ 104 (133)
..|+-..++.||+.- |....+.-+.+.+-+..-..|..+. |-.......-.+..++.||+||-.+
T Consensus 193 EPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 193 EPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp EEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-S
T ss_pred cchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEeccc
Confidence 345556799999975 4444445677777788888898875 2333445556677899998887543
No 80
>KOG0278|consensus
Probab=67.97 E-value=40 Score=23.85 Aligned_cols=77 Identities=19% Similarity=0.121 Sum_probs=42.3
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccc--eeeE
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSG--LGPG 91 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~--~~~~ 91 (133)
..|-.+|+++-.-.+-..||... .++++ +..+||.||-+ ..+++||-.++. ++........+ |++-
T Consensus 205 ssV~Fwdaksf~~lKs~k~P~nV---~SASL~P~k~~fVaGged-----~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVr 274 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYKMPCNV---ESASLHPKKEFFVAGGED-----FKVYKFDYNTGE--EIGSYNKGHFGPVHCVR 274 (334)
T ss_pred ceeEEeccccccceeeccCcccc---ccccccCCCceEEecCcc-----eEEEEEeccCCc--eeeecccCCCCceEEEE
Confidence 44556666665544444555533 23444 45899999943 578889988885 33222222211 2222
Q ss_pred E-eCCeeeeecC
Q psy14436 92 S-LQLTLPTLTS 102 (133)
Q Consensus 92 ~-~~~~iy~~gG 102 (133)
. =+|.+|..|.
T Consensus 275 FSPdGE~yAsGS 286 (334)
T KOG0278|consen 275 FSPDGELYASGS 286 (334)
T ss_pred ECCCCceeeccC
Confidence 1 2788877663
No 81
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=66.76 E-value=43 Score=23.77 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=48.0
Q ss_pred cEEEEEeCCCCc-eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEe-
Q psy14436 16 VSVERFDPKLNR-WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL- 93 (133)
Q Consensus 16 ~~~~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~- 93 (133)
+.+..|+....+ +.+...+..+-...++.+.++.|++ |... ..-.+..|+....+-..++.-..++...++..+
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~v-gD~~---~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~ 182 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILV-GDAM---KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV 182 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEE-EESS---SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-
T ss_pred CEEEEEEccCcccchhhheecceEEEEEEeccccEEEE-EEcc---cCEEEEEEEccCCEEEEEEecCCCccEEEEEEec
Confidence 667788887777 7777655554455666677886664 4421 123456778877777777755556666666666
Q ss_pred CCe
Q psy14436 94 QLT 96 (133)
Q Consensus 94 ~~~ 96 (133)
++.
T Consensus 183 d~~ 185 (321)
T PF03178_consen 183 DED 185 (321)
T ss_dssp SSS
T ss_pred CCc
Confidence 654
No 82
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=66.68 E-value=37 Score=23.00 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=30.3
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEE-ECC-EEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAV-FNN-VIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
..+..||+.+++-...-.... . ...++. -++ .+|+.++. ...+..||+.+.+...
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~-~-~~~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~ 67 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQ-R-PRGITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIG 67 (300)
T ss_pred CEEEEEECCCCceEEEEECCC-C-CCceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEE
Confidence 377889988876433222111 1 112222 233 56776653 2568889998876543
No 83
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=64.41 E-value=34 Score=21.77 Aligned_cols=40 Identities=8% Similarity=0.045 Sum_probs=25.2
Q ss_pred EEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCC
Q psy14436 44 AVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTS 83 (133)
Q Consensus 44 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 83 (133)
+.++|.+|=+.-.........+.+||..+.+.++..++|.
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~ 41 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPF 41 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCC
Confidence 4678888866554332222279999999999943334443
No 84
>KOG0649|consensus
Probab=61.50 E-value=55 Score=23.12 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=41.0
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeec-C-----CCcccccce--EEEEECCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAM-A-----PMSTRRKHL--GCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~-~-----~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.||+|+.+|.. -.+|.+|.+-.++ + ++..|..+- .+...+..-.++||- ..+..+++.+-+
T Consensus 170 qilsG~EDGtv-----RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhLrsse 238 (325)
T KOG0649|consen 170 QILSGAEDGTV-----RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHLRSSE 238 (325)
T ss_pred ceeecCCCccE-----EEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEeccCCC
Confidence 57888887743 3577777766543 2 222222222 333344455556652 234444555444
Q ss_pred eeeCCCCCCcccceeeEEeCCeeeeec
Q psy14436 75 WLPIVAMTSRRSGLGPGSLQLTLPTLT 101 (133)
Q Consensus 75 W~~~~~~~~~r~~~~~~~~~~~iy~~g 101 (133)
=+.+-|.|.+ -+-+...++.+.+.|
T Consensus 239 ~t~vfpipa~--v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 239 STCVFPIPAR--VHLVDFVDDCVLIGG 263 (325)
T ss_pred ceEEEecccc--eeEeeeecceEEEec
Confidence 3443344433 223334455554444
No 85
>KOG2321|consensus
Probab=58.28 E-value=49 Score=26.19 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=17.9
Q ss_pred CCEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 47 NNVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 47 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
.-.||+.|. ..+++++|+..+.|-.
T Consensus 145 scDly~~gs------g~evYRlNLEqGrfL~ 169 (703)
T KOG2321|consen 145 SCDLYLVGS------GSEVYRLNLEQGRFLN 169 (703)
T ss_pred CccEEEeec------CcceEEEEcccccccc
Confidence 346776543 2689999999998843
No 86
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=58.13 E-value=32 Score=25.23 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=33.4
Q ss_pred CeeecEEEEEeCCCCceeecCCCcccccceEEEEE-C--CEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 12 LQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-N--NVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 12 ~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
+.+-.+||.||+++.+-...-+++.+.. ++.+- + ..||.+-+- ...+.+||..+++-
T Consensus 265 KdpgteVWv~D~~t~krv~Ri~l~~~~~--Si~Vsqd~~P~L~~~~~~-----~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKRVARIPLEHPID--SIAVSQDDKPLLYALSAG-----DGTLDVYDAATGKL 324 (342)
T ss_dssp TS-EEEEEEEETTTTEEEEEEEEEEEES--EEEEESSSS-EEEEEETT-----TTEEEEEETTT--E
T ss_pred cCCceEEEEEECCCCeEEEEEeCCCccc--eEEEccCCCcEEEEEcCC-----CCeEEEEeCcCCcE
Confidence 3467899999999987654434443332 23333 2 266655331 26799999999864
No 87
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=54.99 E-value=59 Score=21.44 Aligned_cols=31 Identities=10% Similarity=0.143 Sum_probs=20.0
Q ss_pred CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 47 NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 47 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
++..++++|..+. ...++.||..+. +.+...
T Consensus 111 ~G~~l~~~g~~n~--~G~l~~wd~~~~--~~i~~~ 141 (194)
T PF08662_consen 111 DGRFLVLAGFGNL--NGDLEFWDVRKK--KKISTF 141 (194)
T ss_pred CCCEEEEEEccCC--CcEEEEEECCCC--EEeecc
Confidence 5677888886532 256888998844 445433
No 88
>PRK04792 tolB translocation protein TolB; Provisional
Probab=54.03 E-value=94 Score=23.49 Aligned_cols=62 Identities=8% Similarity=-0.093 Sum_probs=36.6
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
..++.+|..+++-..+...+.........-.+..|++....++ ...++.+|+.+++.+++..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITR 303 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECcc
Confidence 4688999988776666544322111111112345665543222 3578999999998888764
No 89
>KOG1036|consensus
Probab=53.70 E-value=83 Score=22.79 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=32.0
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHT 72 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~ 72 (133)
.+++||.++. +-.||..+..=..+.....+.. ++... ..-.+|.||++ ..+...|+..
T Consensus 67 ~~~~G~~dg~-----vr~~Dln~~~~~~igth~~~i~--ci~~~~~~~~vIsgsWD-----~~ik~wD~R~ 125 (323)
T KOG1036|consen 67 TIVTGGLDGQ-----VRRYDLNTGNEDQIGTHDEGIR--CIEYSYEVGCVISGSWD-----KTIKFWDPRN 125 (323)
T ss_pred eEEEeccCce-----EEEEEecCCcceeeccCCCceE--EEEeeccCCeEEEcccC-----ccEEEEeccc
Confidence 5666666553 4567887776666654322221 22222 22344567876 4577777776
No 90
>KOG1332|consensus
Probab=53.64 E-value=77 Score=22.40 Aligned_cols=75 Identities=11% Similarity=0.178 Sum_probs=36.8
Q ss_pred eecccccCCeeecEEEEEeCCCCceeec----------------CCCcccccceEEEEECCEEEEEecCCCCCccCeEEE
Q psy14436 4 DFNHGYRELQLQVSVERFDPKLNRWTAM----------------APMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67 (133)
Q Consensus 4 ~~~GG~~~~~~~~~~~~yd~~t~~W~~~----------------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 67 (133)
+.+||.+. +-.+|.||. ++|..- |....++...+.+.-++.+++.--
T Consensus 178 lvSgGcDn---~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~------------ 240 (299)
T KOG1332|consen 178 LVSGGCDN---LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK------------ 240 (299)
T ss_pred eeccCCcc---ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe------------
Confidence 56667654 335555554 466432 222334555555555666665421
Q ss_pred EeCCCCceee--CCCCCCcccceeeEEeCCee
Q psy14436 68 YNPHTNTWLP--IVAMTSRRSGLGPGSLQLTL 97 (133)
Q Consensus 68 yd~~~~~W~~--~~~~~~~r~~~~~~~~~~~i 97 (133)
+...+.|+. +.+.|.+... ..-.+-|.+
T Consensus 241 -~~e~e~wk~tll~~f~~~~w~-vSWS~sGn~ 270 (299)
T KOG1332|consen 241 -DEEYEPWKKTLLEEFPDVVWR-VSWSLSGNI 270 (299)
T ss_pred -cCccCcccccccccCCcceEE-EEEeccccE
Confidence 233456643 3455555443 333444544
No 91
>KOG2111|consensus
Probab=52.79 E-value=89 Score=22.84 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=29.8
Q ss_pred eccccc-CCeeecEEEEEeCCCCceee-cC---CCc--ccccceEEEEECCEEEEEe
Q psy14436 5 FNHGYR-ELQLQVSVERFDPKLNRWTA-MA---PMS--TRRKHLGCAVFNNVIYAVG 54 (133)
Q Consensus 5 ~~GG~~-~~~~~~~~~~yd~~t~~W~~-~~---~~p--~~r~~~~~~~~~~~iyv~G 54 (133)
+.||.. ...+.+.+.+||-....-.. +. +.. .-|..+-++++.++|||+-
T Consensus 63 LVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~Vyt 119 (346)
T KOG2111|consen 63 LVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYT 119 (346)
T ss_pred EecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEE
Confidence 445554 56678999999965544322 21 111 0133456777889888874
No 92
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=51.17 E-value=91 Score=22.50 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=41.5
Q ss_pred eecccccCC-eeecEEEEEeCCCCceeecCCCcccccceEEEE--ECCEEEEEecCCCCCccCeEEEEeCCC--CceeeC
Q psy14436 4 DFNHGYREL-QLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAV--FNNVIYAVGGRDDSMELSSAEKYNPHT--NTWLPI 78 (133)
Q Consensus 4 ~~~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~~ 78 (133)
+|+|+.... ...=.++.||..+.++..+......-...-++. -++.||+..... .....+..|+... .+.+.+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEe
Confidence 567777641 112234556779999987764222221122333 246888885532 1235566665544 577776
Q ss_pred CCCC
Q psy14436 79 VAMT 82 (133)
Q Consensus 79 ~~~~ 82 (133)
...+
T Consensus 80 ~~~~ 83 (345)
T PF10282_consen 80 NSVP 83 (345)
T ss_dssp EEEE
T ss_pred eeec
Confidence 5444
No 93
>KOG0647|consensus
Probab=49.78 E-value=99 Score=22.51 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=33.1
Q ss_pred CceecccccCCeeecEEEEEeCCCCceeecCCCccc-ccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCC
Q psy14436 2 NEDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTR-RKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTN 73 (133)
Q Consensus 2 ~~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 73 (133)
+++|+|+.++. +..||..+++-.++.....+ |..|-+-..+-.+.+.|.++ ..+--+|+..-
T Consensus 85 skVf~g~~Dk~-----~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD-----KTlKfWD~R~~ 147 (347)
T KOG0647|consen 85 SKVFSGGCDKQ-----AKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWD-----KTLKFWDTRSS 147 (347)
T ss_pred ceEEeeccCCc-----eEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccc-----cceeecccCCC
Confidence 46788887653 45789999877777632222 22222212222445556654 33444565543
No 94
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=49.74 E-value=42 Score=22.99 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=36.3
Q ss_pred CceeecC--CCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCc----ccceeeEEe-CCee
Q psy14436 26 NRWTAMA--PMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSR----RSGLGPGSL-QLTL 97 (133)
Q Consensus 26 ~~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~----r~~~~~~~~-~~~i 97 (133)
.+|.... .+|.+.....+..+ ++.++++.........-.+..-.-...+|.+...+... -.+..++.. +++|
T Consensus 194 ~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l 273 (275)
T PF13088_consen 194 RTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKL 273 (275)
T ss_dssp SS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEE
T ss_pred CcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcC
Confidence 4687754 34444444444443 56888776632211222233333346789866544332 245555555 4688
Q ss_pred ee
Q psy14436 98 PT 99 (133)
Q Consensus 98 y~ 99 (133)
||
T Consensus 274 ~i 275 (275)
T PF13088_consen 274 YI 275 (275)
T ss_dssp EE
T ss_pred CC
Confidence 43
No 95
>PRK04043 tolB translocation protein TolB; Provisional
Probab=49.39 E-value=1.1e+02 Score=22.98 Aligned_cols=63 Identities=8% Similarity=0.032 Sum_probs=38.2
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECC-EEEEEecCCCCCccCeEEEEeCCCCceeeCCCCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMT 82 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 82 (133)
.++|.+|..+++=+++...+. ........-++ +|.+.-...+ ...++.+|..++.++++.+.+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~ 276 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYP 276 (419)
T ss_pred CEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCC
Confidence 479999998877666654221 11111122244 5555433222 368999999999999886544
No 96
>KOG0281|consensus
Probab=47.39 E-value=55 Score=24.30 Aligned_cols=71 Identities=6% Similarity=0.185 Sum_probs=40.9
Q ss_pred EEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeCCee
Q psy14436 18 VERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTL 97 (133)
Q Consensus 18 ~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i 97 (133)
+-.++..|.+..+ .+..++.+.++.-..++++|-|..+ +.+..+|...+.--++-.-. -..-.++.++++-
T Consensus 342 ikvW~~st~efvR--tl~gHkRGIAClQYr~rlvVSGSSD-----ntIRlwdi~~G~cLRvLeGH--EeLvRciRFd~kr 412 (499)
T KOG0281|consen 342 IKVWSTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGACLRVLEGH--EELVRCIRFDNKR 412 (499)
T ss_pred EEEEeccceeeeh--hhhcccccceehhccCeEEEecCCC-----ceEEEEeccccHHHHHHhch--HHhhhheeecCce
Confidence 4455555554433 3444555566666788988877643 56788888887654432111 1123455677777
No 97
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=47.38 E-value=1.1e+02 Score=22.29 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=42.7
Q ss_pred EEEEEeCCCCc--eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCC--ceeeCCCCCCcccceeeEE
Q psy14436 17 SVERFDPKLNR--WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTN--TWLPIVAMTSRRSGLGPGS 92 (133)
Q Consensus 17 ~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~ 92 (133)
.++.+|+.+.+ |......-...........+++||+ |..++ .+++||..+. .|+.-.+.. .+....++.
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~-g~~~g-----~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~ 151 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYV-GSWDG-----KLYALDASTGTLVWSRNVGGS-PYYASPPVV 151 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEE-ecccc-----eEEEEECCCCcEEEEEecCCC-eEEecCcEE
Confidence 68899999987 8553321011111122233778775 44332 7899999644 586654432 344444555
Q ss_pred eCCeeeee
Q psy14436 93 LQLTLPTL 100 (133)
Q Consensus 93 ~~~~iy~~ 100 (133)
.++.+|+-
T Consensus 152 ~~~~v~~~ 159 (370)
T COG1520 152 GDGTVYVG 159 (370)
T ss_pred cCcEEEEe
Confidence 56666555
No 98
>PRK04792 tolB translocation protein TolB; Provisional
Probab=46.65 E-value=1.3e+02 Score=22.82 Aligned_cols=60 Identities=7% Similarity=-0.066 Sum_probs=35.7
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECC-EEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
.+++.+|..+++.+++..-....... ...-++ .|++..... ....++.+|+.+++++++.
T Consensus 286 ~~Iy~~dl~tg~~~~lt~~~~~~~~p-~wSpDG~~I~f~s~~~---g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 286 PEIYVVDIATKALTRITRHRAIDTEP-SWHPDGKSLIFTSERG---GKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred eEEEEEECCCCCeEECccCCCCccce-EECCCCCEEEEEECCC---CCceEEEEECCCCCEEEEe
Confidence 46899999998887775422111111 112243 555443222 2257899999999888774
No 99
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=46.16 E-value=1.2e+02 Score=22.39 Aligned_cols=61 Identities=13% Similarity=0.057 Sum_probs=34.6
Q ss_pred eeecEEEEEeCCCCceeecCCCcc-cccce-----EEEE--ECCEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 13 QLQVSVERFDPKLNRWTAMAPMST-RRKHL-----GCAV--FNNVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 13 ~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~-----~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
.+++-+..||.+|-+=..--.+|. +|... ..+. -+..+||.. -....+|.+-|+..++--.
T Consensus 64 ~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 64 ERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTTEEEE
T ss_pred cceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc----cCCCCeEEEEECCCCceee
Confidence 347889999999975433222332 23321 1122 234677652 2256788889999987643
No 100
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=45.21 E-value=27 Score=21.43 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=15.9
Q ss_pred eecEEEEEeCCCCceeecC
Q psy14436 14 LQVSVERFDPKLNRWTAMA 32 (133)
Q Consensus 14 ~~~~~~~yd~~t~~W~~~~ 32 (133)
....+|.||..+++|++..
T Consensus 27 ~~v~vY~f~~~~~~W~K~~ 45 (122)
T PF06058_consen 27 SHVVVYKFDHETNEWEKTD 45 (122)
T ss_dssp EEEEEEEEETTTTEEEEEE
T ss_pred CeEEEEeecCCCCcEeecC
Confidence 4567899999999998864
No 101
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=44.43 E-value=1.2e+02 Score=22.11 Aligned_cols=61 Identities=5% Similarity=-0.084 Sum_probs=35.8
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECC-EEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
.+++.+|..+++-..+...+...... ...-++ .|++.....+ ...++.+|+.++..+++..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~ 275 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTN 275 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCC
Confidence 57889999887766655433222221 112243 5655433221 2578899999888777754
No 102
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=44.33 E-value=57 Score=24.42 Aligned_cols=86 Identities=10% Similarity=-0.074 Sum_probs=42.8
Q ss_pred ecEEEEEeCCCCceeecC-CCcccccceEEEEECC-EEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEE
Q psy14436 15 QVSVERFDPKLNRWTAMA-PMSTRRKHLGCAVFNN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGS 92 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 92 (133)
.+.||..|.......++. .++....+|-.-+.++ .|+..+... .+..--+..||+.+..=+.+.+|| .+.|-...
T Consensus 215 d~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~-~~~~~~i~~~d~~t~~~~~~~~~p--~~~H~~ss 291 (386)
T PF14583_consen 215 DQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP-GGQDFWIAGYDPDTGERRRLMEMP--WCSHFMSS 291 (386)
T ss_dssp S-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEET-TT--EEEEEE-TTT--EEEEEEE---SEEEEEE-
T ss_pred ceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecC-CCCceEEEeeCCCCCCceEEEeCC--ceeeeEEc
Confidence 347888887665554543 3444445565555555 444444322 233446888999988645555554 45566667
Q ss_pred eCCeeeeecCc
Q psy14436 93 LQLTLPTLTSV 103 (133)
Q Consensus 93 ~~~~iy~~gG~ 103 (133)
.++++++=.|+
T Consensus 292 ~Dg~L~vGDG~ 302 (386)
T PF14583_consen 292 PDGKLFVGDGG 302 (386)
T ss_dssp TTSSEEEEEE-
T ss_pred CCCCEEEecCC
Confidence 78888666655
No 103
>PTZ00421 coronin; Provisional
Probab=43.61 E-value=1.5e+02 Score=22.90 Aligned_cols=51 Identities=10% Similarity=0.183 Sum_probs=26.9
Q ss_pred EEEEEeCCCCceeecCCCcccccc-eEEEE-ECCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKH-LGCAV-FNNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+.+||..+.+-.. .+...... .+++. -++.+++.|+.+ ..+..||+.+.+
T Consensus 149 tVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~ 201 (493)
T PTZ00421 149 VVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT 201 (493)
T ss_pred EEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence 46677877654321 11111111 12222 256677777654 568889998765
No 104
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=43.05 E-value=38 Score=15.77 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=15.1
Q ss_pred EEEECCEEEEEecCCCCCccCeEEEEeCCC
Q psy14436 43 CAVFNNVIYAVGGRDDSMELSSAEKYNPHT 72 (133)
Q Consensus 43 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 72 (133)
.++.++.||+.+. ...++++|+.+
T Consensus 17 ~~v~~g~vyv~~~------dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTG------DGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-T------TSEEEEEETT-
T ss_pred CEEECCEEEEEcC------CCEEEEEeCCC
Confidence 4666788887644 25788888764
No 105
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=42.61 E-value=1.3e+02 Score=21.87 Aligned_cols=85 Identities=13% Similarity=0.019 Sum_probs=43.8
Q ss_pred eecccccCCeeecEEEEEeCCCC--ceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCC--ceeeCC
Q psy14436 4 DFNHGYRELQLQVSVERFDPKLN--RWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTN--TWLPIV 79 (133)
Q Consensus 4 ~~~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~ 79 (133)
||+|..++ .+++||..+. .|..-.... ++..-..+..++.+|+.. ....+.+.|..+. .|+.-.
T Consensus 114 i~~g~~~g-----~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 114 IYVGSWDG-----KLYALDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred EEEecccc-----eEEEEECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEec
Confidence 44444444 7899999654 476543321 333333444566776542 1256777777755 476332
Q ss_pred CC-CCcccceeeEEeCCeeeee
Q psy14436 80 AM-TSRRSGLGPGSLQLTLPTL 100 (133)
Q Consensus 80 ~~-~~~r~~~~~~~~~~~iy~~ 100 (133)
+. ...+...+.+..++.+|+-
T Consensus 182 ~~~~~~~~~~~~~~~~~~vy~~ 203 (370)
T COG1520 182 PAPLSLSIYGSPAIASGTVYVG 203 (370)
T ss_pred CCccccccccCceeecceEEEe
Confidence 22 2222222333556666443
No 106
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=42.44 E-value=97 Score=22.20 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=36.5
Q ss_pred EECCEEEEEecCCCCCc--cCeEEEEeCC-CCceeeCCCCC-CcccceeeEEeCCeeeeecCceE
Q psy14436 45 VFNNVIYAVGGRDDSME--LSSAEKYNPH-TNTWLPIVAMT-SRRSGLGPGSLQLTLPTLTSVKF 105 (133)
Q Consensus 45 ~~~~~iyv~GG~~~~~~--~~~~~~yd~~-~~~W~~~~~~~-~~r~~~~~~~~~~~iy~~gG~~~ 105 (133)
..+++.+++|-...+.+ .+.|..|.-. .++|+.++..| -...-+-.+.+++.+ |+||..-
T Consensus 34 ~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~gel-ifGGvev 97 (298)
T PF08950_consen 34 EYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGEL-IFGGVEV 97 (298)
T ss_dssp EETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEE-EEEEEEE
T ss_pred eECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEE-EEeeEEE
Confidence 46889999887654333 5677777666 88999998644 344455666778876 5666543
No 107
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=40.43 E-value=1.7e+02 Score=22.46 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=43.2
Q ss_pred ecEEEEEeCCCCc--eeecCC-C------cccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCC
Q psy14436 15 QVSVERFDPKLNR--WTAMAP-M------STRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTS 83 (133)
Q Consensus 15 ~~~~~~yd~~t~~--W~~~~~-~------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~ 83 (133)
...+.++|..+.+ |+.-.. - ..+......+..++.||+ |..+ ..++++|..+.+ |+. +++.
T Consensus 365 ~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~-g~~d-----G~l~ald~~tG~~lW~~--~~~~ 436 (488)
T cd00216 365 KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA-GAAD-----GYFRAFDATTGKELWKF--RTPS 436 (488)
T ss_pred ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE-ECCC-----CeEEEEECCCCceeeEE--ECCC
Confidence 3468899998765 765322 0 011222233455566665 4332 468999998885 764 3443
Q ss_pred cc-cceeeEEeCCeeeee
Q psy14436 84 RR-SGLGPGSLQLTLPTL 100 (133)
Q Consensus 84 ~r-~~~~~~~~~~~iy~~ 100 (133)
+. ..+.+...++++||.
T Consensus 437 ~~~a~P~~~~~~g~~yv~ 454 (488)
T cd00216 437 GIQATPMTYEVNGKQYVG 454 (488)
T ss_pred CceEcCEEEEeCCEEEEE
Confidence 33 223333568998774
No 108
>PRK00178 tolB translocation protein TolB; Provisional
Probab=38.99 E-value=1.6e+02 Score=21.83 Aligned_cols=61 Identities=5% Similarity=-0.091 Sum_probs=35.6
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECC-EEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
..++.+|..+++-+++...+..... ....-++ .|++....++ ...++.+|+.+++.+++..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~-~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGA-PAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCC-eEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEccc
Confidence 4688899988877776543321111 1112233 5554332221 2579999999998887764
No 109
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=38.79 E-value=1.5e+02 Score=21.48 Aligned_cols=58 Identities=10% Similarity=0.209 Sum_probs=31.8
Q ss_pred cEEEEEeCCCCceeecCCCccc-ccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTR-RKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
+.+-..|+.+..=+.++. |.+ .....-+-. .+.+.+. ......+.+|||...+|.+-+
T Consensus 210 naiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wit-----twg~g~l~rfdPs~~sW~eyp 270 (353)
T COG4257 210 NAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWIT-----TWGTGSLHRFDPSVTSWIEYP 270 (353)
T ss_pred cceEEcccccCCcceecC-CCcccccccccccCccCcEEEe-----ccCCceeeEeCcccccceeee
Confidence 445566776664444442 333 222222222 2456554 112467999999999998764
No 110
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=38.04 E-value=1.3e+02 Score=20.33 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=46.8
Q ss_pred eeecEEEEEeCCCCceeecC--CCcccccceEEE--EECCEE-EEEecC-CCCCccCeEEEEeCCCCceeeCCCCCCccc
Q psy14436 13 QLQVSVERFDPKLNRWTAMA--PMSTRRKHLGCA--VFNNVI-YAVGGR-DDSMELSSAEKYNPHTNTWLPIVAMTSRRS 86 (133)
Q Consensus 13 ~~~~~~~~yd~~t~~W~~~~--~~p~~r~~~~~~--~~~~~i-yv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~ 86 (133)
...-++|.+|..++.|..+. +-+ ....+--+ ..+..| +++|.. +.-..-..+++|++.++.-+++.+......
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~-~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkkq 163 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNE-EKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKKQ 163 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcc-cccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccce
Confidence 45778999999999997663 211 12222222 234444 455532 212234689999999999999887765443
Q ss_pred ceeeE
Q psy14436 87 GLGPG 91 (133)
Q Consensus 87 ~~~~~ 91 (133)
....+
T Consensus 164 QVis~ 168 (200)
T PF15525_consen 164 QVISA 168 (200)
T ss_pred eEEEE
Confidence 33333
No 111
>KOG0318|consensus
Probab=37.40 E-value=2.1e+02 Score=22.63 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=24.1
Q ss_pred CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEe--CCee
Q psy14436 47 NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL--QLTL 97 (133)
Q Consensus 47 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i 97 (133)
++...++||.+ .+++.|-+.-+.-.+..-+...|.....+.+ +++.
T Consensus 454 ~~~~vaVGG~D-----gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 454 DGSEVAVGGQD-----GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred CCCEEEEeccc-----ceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 34555566643 4578887776654443333344444444444 4444
No 112
>PF15537 Toxin_59: Putative toxin 59
Probab=35.98 E-value=17 Score=22.22 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=11.1
Q ss_pred EEEEeCCCCceeecC
Q psy14436 18 VERFDPKLNRWTAMA 32 (133)
Q Consensus 18 ~~~yd~~t~~W~~~~ 32 (133)
-++|||+++....-.
T Consensus 53 eFVFDP~~~~Fa~G~ 67 (125)
T PF15537_consen 53 EFVFDPKTNRFAVGS 67 (125)
T ss_pred cEEEcCCcCeEeecC
Confidence 368999998885543
No 113
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=35.92 E-value=1e+02 Score=18.69 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=16.0
Q ss_pred eecEEEEEeCCCC-ceeecCC
Q psy14436 14 LQVSVERFDPKLN-RWTAMAP 33 (133)
Q Consensus 14 ~~~~~~~yd~~t~-~W~~~~~ 33 (133)
....+..||+.+. .|....+
T Consensus 9 arA~V~~yd~~tKk~WvPs~~ 29 (111)
T cd01206 9 TRAHVFQIDPKTKKNWIPASK 29 (111)
T ss_pred eeeEEEEECCCCcceeEeCCC
Confidence 4678999999875 9987764
No 114
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=35.18 E-value=1.3e+02 Score=19.72 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=28.9
Q ss_pred CCEEEEEecCCCCCccCeEEEEeCCCCceeeC---------CCCCCcccceeeEEeC-CeeeeecCceE
Q psy14436 47 NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI---------VAMTSRRSGLGPGSLQ-LTLPTLTSVKF 105 (133)
Q Consensus 47 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---------~~~~~~r~~~~~~~~~-~~iy~~gG~~~ 105 (133)
++++|++-| +..++||..+++...- +.+|.. --++...+ +++|.|-|...
T Consensus 110 ~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~g~~y 169 (194)
T cd00094 110 NGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK--VDAAFRWLDGYYYFFKGDQY 169 (194)
T ss_pred CCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCCC--cceeEEeCCCcEEEEECCEE
Confidence 579999977 5677777655443211 112222 22333444 88988777766
No 115
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=35.12 E-value=1.6e+02 Score=20.58 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=47.9
Q ss_pred eecEEEEEeCCCCceeecCCCccccc------------ceEEEEECCEEEEEecCCCCCccCeEEEEeCCC----Cceee
Q psy14436 14 LQVSVERFDPKLNRWTAMAPMSTRRK------------HLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHT----NTWLP 77 (133)
Q Consensus 14 ~~~~~~~yd~~t~~W~~~~~~p~~r~------------~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~ 77 (133)
..++|.+||..++.-.....+|.+.. ..-.++..+-|+++=....++..-.+.+.||.+ .+|..
T Consensus 87 ~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T 166 (250)
T PF02191_consen 87 NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT 166 (250)
T ss_pred CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe
Confidence 46889999999987653222332221 133445556677765443332224455667754 35764
Q ss_pred CCCCCCcccceeeEEeCCeeeeecCc
Q psy14436 78 IVAMTSRRSGLGPGSLQLTLPTLTSV 103 (133)
Q Consensus 78 ~~~~~~~r~~~~~~~~~~~iy~~gG~ 103 (133)
..+.+ ....+.++.|.||++...
T Consensus 167 --~~~k~-~~~naFmvCGvLY~~~s~ 189 (250)
T PF02191_consen 167 --SYPKR-SAGNAFMVCGVLYATDSY 189 (250)
T ss_pred --ccCch-hhcceeeEeeEEEEEEEC
Confidence 33332 333455667888777654
No 116
>KOG0289|consensus
Probab=34.19 E-value=2.2e+02 Score=21.95 Aligned_cols=70 Identities=11% Similarity=0.187 Sum_probs=38.0
Q ss_pred EEEEeCCCCceeecCCCccc-ccceEEEEEC--CEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeC
Q psy14436 18 VERFDPKLNRWTAMAPMSTR-RKHLGCAVFN--NVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQ 94 (133)
Q Consensus 18 ~~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 94 (133)
|.+||.+..+ ..+..+.+ ........++ +...+++|. .-.++.|+..+.+|+++..++..-.....+.++
T Consensus 413 V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~-----~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 413 VKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS-----DLQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred EEEEEehhhc--ccceeeccccccceeEEEcCCCCeEEeecc-----eeEEEEEecccccceeeehhhhcccccceeeec
Confidence 7788886654 22222211 1122233333 455556652 246777888899999998766544333344443
No 117
>PRK04043 tolB translocation protein TolB; Provisional
Probab=34.08 E-value=2e+02 Score=21.60 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=38.0
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
.++|.+|..+.+++++.+.+..-......-.+..|+...... ....++.+|+.+++.+++.
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~---g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL---GYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC---CCceEEEEECCCCCeEeCc
Confidence 579999999998888865432111111111234677664432 2357888999888887765
No 118
>PRK02888 nitrous-oxide reductase; Validated
Probab=33.83 E-value=1.1e+02 Score=24.62 Aligned_cols=53 Identities=9% Similarity=0.011 Sum_probs=36.9
Q ss_pred cEEEEEeCCC---CceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCC
Q psy14436 16 VSVERFDPKL---NRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTN 73 (133)
Q Consensus 16 ~~~~~yd~~t---~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 73 (133)
+.|-+.|..+ ..+..+..+|.++..|++.+. +..+|+.|+.+ ..+.++|+.+.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS-----~tVSVIDv~k~ 353 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS-----PTVTVIDVRKL 353 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC-----CcEEEEEChhh
Confidence 5588888877 235556667888888888875 34788777753 56677777653
No 119
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=33.57 E-value=18 Score=18.99 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=9.4
Q ss_pred EEEeCCCCcee
Q psy14436 66 EKYNPHTNTWL 76 (133)
Q Consensus 66 ~~yd~~~~~W~ 76 (133)
..||+.|.+|.
T Consensus 21 r~YD~~Tr~W~ 31 (55)
T PF07443_consen 21 RNYDPKTRKWN 31 (55)
T ss_pred cccCccceeee
Confidence 46899999996
No 120
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=33.39 E-value=2e+02 Score=21.21 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=45.8
Q ss_pred ecEEEEEeCCCC-----ceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc---ee-eCCCCCCcc
Q psy14436 15 QVSVERFDPKLN-----RWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT---WL-PIVAMTSRR 85 (133)
Q Consensus 15 ~~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~-~~~~~~~~r 85 (133)
.++++..|.... .|..+.+ +..-....+...++.+|+....+ .....+...++.... |. .+.+-....
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~~~~~~~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVDHHGDRLYILTNDD--APNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CCeEEEEeccccCCCcCCcEEEeC-CCCceEEEEEccCCEEEEeeCCC--CCCcEEEEecccccccccceeEEcCCCCce
Confidence 488999999875 6777643 12222234455688999876532 234677778777665 66 444433333
Q ss_pred cceeeEEeCCeeee
Q psy14436 86 SGLGPGSLQLTLPT 99 (133)
Q Consensus 86 ~~~~~~~~~~~iy~ 99 (133)
....+...++++++
T Consensus 328 ~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 328 SLEDVSLFKDYLVL 341 (414)
T ss_dssp EEEEEEEETTEEEE
T ss_pred eEEEEEEECCEEEE
Confidence 34444455666543
No 121
>KOG0310|consensus
Probab=32.58 E-value=1.8e+02 Score=22.45 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=12.5
Q ss_pred ceecccccCCeeecEEEEEeCCCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLN 26 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~ 26 (133)
++++||+++.. -.||.++.
T Consensus 168 ivvtGsYDg~v-----rl~DtR~~ 186 (487)
T KOG0310|consen 168 IVVTGSYDGKV-----RLWDTRSL 186 (487)
T ss_pred EEEecCCCceE-----EEEEeccC
Confidence 48889988753 34566555
No 122
>PRK00178 tolB translocation protein TolB; Provisional
Probab=31.98 E-value=2.1e+02 Score=21.18 Aligned_cols=60 Identities=8% Similarity=-0.018 Sum_probs=35.7
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEEC-CEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFN-NVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
.+++.+|..+.+..++..-+..-... ...-+ ..|+...... ....++.+|+.+++++++.
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~spDg~~i~f~s~~~---g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPAIDTEP-FWGKDGRTLYFTSDRG---GKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred ceEEEEECCCCCeEEcccCCCCcCCe-EECCCCCEEEEEECCC---CCceEEEEECCCCCEEEee
Confidence 47899999998887765422111111 11223 4565543221 2357888999888887775
No 123
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=31.83 E-value=1.4e+02 Score=18.91 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=27.1
Q ss_pred CEEEEEecCCCCCccCeEEEEeCCCCc---eeeCCCCCCcccceeeEEe---CCeeeeecCceE
Q psy14436 48 NVIYAVGGRDDSMELSSAEKYNPHTNT---WLPIVAMTSRRSGLGPGSL---QLTLPTLTSVKF 105 (133)
Q Consensus 48 ~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~r~~~~~~~~---~~~iy~~gG~~~ 105 (133)
..+.++|- .+.+.+||...|+ +++++ ..........+ ...+.++||.-+
T Consensus 64 ~D~LliGt------~t~llaYDV~~N~d~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGncs 118 (136)
T PF14781_consen 64 RDCLLIGT------QTSLLAYDVENNSDLFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGNCS 118 (136)
T ss_pred cCEEEEec------cceEEEEEcccCchhhhhhCc---cceeEEEEEecCCCCCcEEEECceEE
Confidence 35556654 3689999999886 44444 33222222222 456756666544
No 124
>KOG0310|consensus
Probab=31.48 E-value=2.4e+02 Score=21.87 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.5
Q ss_pred ECCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 46 FNNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 46 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+++|++.||++ ..+-.||+.+.+
T Consensus 164 ~~~hivvtGsYD-----g~vrl~DtR~~~ 187 (487)
T KOG0310|consen 164 ANDHIVVTGSYD-----GKVRLWDTRSLT 187 (487)
T ss_pred CCCeEEEecCCC-----ceEEEEEeccCC
Confidence 356899999986 467888888774
No 125
>PRK05137 tolB translocation protein TolB; Provisional
Probab=30.85 E-value=2.3e+02 Score=21.19 Aligned_cols=61 Identities=5% Similarity=-0.105 Sum_probs=36.4
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECC-EEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
..++.+|+.+++...+...+...... ...-++ .|++....++ ...++.+|+.++.-+++..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAP-RFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCc-EECCCCCEEEEEEecCC---CceEEEEECCCCceEEccC
Confidence 57899999888877776443322211 112234 5554433222 3578888998888777754
No 126
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=30.65 E-value=49 Score=17.83 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=11.8
Q ss_pred cEEEEEeCCCCceee
Q psy14436 16 VSVERFDPKLNRWTA 30 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~ 30 (133)
=.++.||+.+++-+-
T Consensus 41 iKIfkyd~~tNei~L 55 (63)
T PF14157_consen 41 IKIFKYDEDTNEITL 55 (63)
T ss_dssp EEEEEEETTTTEEEE
T ss_pred EEEEEeCCCCCeEEE
Confidence 468899999987654
No 127
>KOG0284|consensus
Probab=29.85 E-value=1.9e+02 Score=21.98 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=29.2
Q ss_pred CceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCC
Q psy14436 2 NEDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPH 71 (133)
Q Consensus 2 ~~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 71 (133)
..|++||.++ -|-.+||++.+.. ..+.........+.+ ++...+.++.+ ..+.+||..
T Consensus 235 gLiasgskDn-----lVKlWDprSg~cl--~tlh~HKntVl~~~f~~n~N~Llt~skD-----~~~kv~DiR 294 (464)
T KOG0284|consen 235 GLIASGSKDN-----LVKLWDPRSGSCL--ATLHGHKNTVLAVKFNPNGNWLLTGSKD-----QSCKVFDIR 294 (464)
T ss_pred ceeEEccCCc-----eeEeecCCCcchh--hhhhhccceEEEEEEcCCCCeeEEccCC-----ceEEEEehh
Confidence 3456666544 5567888876542 222222222222223 34444445543 467778877
No 128
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=28.98 E-value=1.3e+02 Score=17.87 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=18.8
Q ss_pred EEEEeCCCCceeecCCCcccccceEEEEECCEEEE
Q psy14436 18 VERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYA 52 (133)
Q Consensus 18 ~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv 52 (133)
-++||..|++....+.. +...+-+-.-++.|||
T Consensus 74 ~~~Fdl~TG~~~~~~~~--~l~typV~ve~g~V~v 106 (108)
T PRK09511 74 KQRFRLSDGLCMEDEQF--SVKHYDARVKDGVVQL 106 (108)
T ss_pred CCEEECCCcccCCCCCc--cEeeEeEEEECCEEEE
Confidence 35788888877543322 2223334445777776
No 129
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=28.68 E-value=2.2e+02 Score=20.46 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=27.6
Q ss_pred cccccCCeeecEEEEEeCCCCceeecCC-CcccccceEEEEECCEEEEEec
Q psy14436 6 NHGYRELQLQVSVERFDPKLNRWTAMAP-MSTRRKHLGCAVFNNVIYAVGG 55 (133)
Q Consensus 6 ~GG~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG 55 (133)
+-|.....+-+.+.+-+..-..|..+.- -..+....-.+..++.||+||.
T Consensus 207 TRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 207 TRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp EEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred EcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEec
Confidence 3444455566777777777788987752 2234455556778999999996
No 130
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=28.67 E-value=1.5e+02 Score=18.26 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=19.4
Q ss_pred EEEEeCCC-CceeecCCCcccccceEEEEE--CCEEEEEe
Q psy14436 18 VERFDPKL-NRWTAMAPMSTRRKHLGCAVF--NNVIYAVG 54 (133)
Q Consensus 18 ~~~yd~~t-~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G 54 (133)
-+.||+.+ +.....|+ +.+...+-+..- ++.||+.|
T Consensus 77 g~~Fdl~tgG~~~~gPa-~~~L~~ypv~ve~~~g~V~~~~ 115 (126)
T cd03476 77 FSQFDPARGGQMVSGQA-TQNLPQIVLEYDEASGDIYAVG 115 (126)
T ss_pred CCEEeCCCCCeEEcCCC-CCCCCeEEEEEECCCCEEEEEE
Confidence 34688864 35544332 223333445555 67888876
No 131
>PRK01029 tolB translocation protein TolB; Provisional
Probab=26.90 E-value=2.8e+02 Score=20.89 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=30.3
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECC-EEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
.+++.+|+.+++.+.+..-+...... ...-++ .|++..... ....++.+|+..++.+++.
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~~~~~~~p-~wSpDG~~L~f~~~~~---g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTSPENKESP-SWAIDSLHLVYSAGNS---NESELYLISLITKKTRKIV 411 (428)
T ss_pred cEEEEEECCCCCeEEccCCCCCccce-EECCCCCEEEEEECCC---CCceEEEEECCCCCEEEee
Confidence 35777787777776665322111111 111233 444333211 1256777777777766664
No 132
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=26.48 E-value=3.8e+02 Score=22.28 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=33.3
Q ss_pred eecEEEEEeCCCCc--eeecC-------C----C--c----ccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 14 LQVSVERFDPKLNR--WTAMA-------P----M--S----TRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 14 ~~~~~~~yd~~t~~--W~~~~-------~----~--p----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
+.-.+.++|++|++ |+.-- + + | .+..+-.++.-++.+|+ ||.. ...+..||..+++
T Consensus 639 p~G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~-~gt~----d~~l~A~D~~tGk 713 (764)
T TIGR03074 639 PWGYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFI-GATQ----DNYLRAYDLSTGK 713 (764)
T ss_pred CcEEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEE-EeCC----CCEEEEEECCCCc
Confidence 35668899998875 75522 0 0 1 11112123344556655 4432 2579999998875
Q ss_pred --eee
Q psy14436 75 --WLP 77 (133)
Q Consensus 75 --W~~ 77 (133)
|+.
T Consensus 714 ~lW~~ 718 (764)
T TIGR03074 714 ELWKA 718 (764)
T ss_pred eeeEe
Confidence 764
No 133
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=26.31 E-value=1.7e+02 Score=18.10 Aligned_cols=40 Identities=8% Similarity=0.019 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCceeecCCCcc-------cccceEEEEECCEEEEEec
Q psy14436 16 VSVERFDPKLNRWTAMAPMST-------RRKHLGCAVFNNVIYAVGG 55 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~-------~r~~~~~~~~~~~iyv~GG 55 (133)
-.=|.||..+++...++..|. ....+.+...++.||+.=+
T Consensus 78 ~Hgw~Fdl~tG~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~ 124 (136)
T cd03548 78 YHGWTYRLDDGKLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVG 124 (136)
T ss_pred CCccEEeCCCccEEEcccCCCccccccCCCceEeEEEECCEEEEEeC
Confidence 345689999999877643331 1223344456778877533
No 134
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=25.53 E-value=1.5e+02 Score=17.18 Aligned_cols=14 Identities=21% Similarity=0.180 Sum_probs=7.5
Q ss_pred EEEEeCCCCceeec
Q psy14436 18 VERFDPKLNRWTAM 31 (133)
Q Consensus 18 ~~~yd~~t~~W~~~ 31 (133)
-+.||..|++....
T Consensus 70 g~~Fdl~tG~~~~~ 83 (103)
T cd03529 70 KQHFSLKTGRCLED 83 (103)
T ss_pred CCEEEcCCCCccCC
Confidence 34566666655443
No 135
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=24.79 E-value=2.8e+02 Score=20.24 Aligned_cols=60 Identities=7% Similarity=-0.079 Sum_probs=34.1
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECC-EEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
.+++.+|..++...++...+...... ...-++ .|+......+ ...++.+|+.+.+++++.
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLT 318 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCCE-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEee
Confidence 46888998887776665322111111 111244 5554433222 247888999888887765
No 136
>KOG0282|consensus
Probab=24.54 E-value=1.4e+02 Score=23.16 Aligned_cols=10 Identities=50% Similarity=0.916 Sum_probs=8.0
Q ss_pred CEEEEEecCC
Q psy14436 48 NVIYAVGGRD 57 (133)
Q Consensus 48 ~~iyv~GG~~ 57 (133)
..++++||.+
T Consensus 312 ~n~fl~G~sd 321 (503)
T KOG0282|consen 312 QNIFLVGGSD 321 (503)
T ss_pred CcEEEEecCC
Confidence 4899999864
No 137
>KOG0280|consensus
Probab=24.04 E-value=1.5e+02 Score=21.56 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=13.0
Q ss_pred CceecccccCCeeecEEEEEeCC
Q psy14436 2 NEDFNHGYRELQLQVSVERFDPK 24 (133)
Q Consensus 2 ~~~~~GG~~~~~~~~~~~~yd~~ 24 (133)
|.+++||.++. +-++|.+
T Consensus 179 nlvytGgDD~~-----l~~~D~R 196 (339)
T KOG0280|consen 179 NLVYTGGDDGS-----LSCWDIR 196 (339)
T ss_pred ceEEecCCCce-----EEEEEec
Confidence 67899998764 4567776
No 138
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=23.97 E-value=3.4e+02 Score=20.84 Aligned_cols=78 Identities=9% Similarity=0.043 Sum_probs=41.2
Q ss_pred cEEEEEeCCCCc--eeecCCCc----cc-ccceEEEEEC-CEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCC--
Q psy14436 16 VSVERFDPKLNR--WTAMAPMS----TR-RKHLGCAVFN-NVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTS-- 83 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p----~~-r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~-- 83 (133)
..++++|..+.+ |+.-...+ .+ ......+..+ +.||+... ...+.++|..+.+ |+.-...+.
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~AlD~~TG~~~W~~~~~~~~~~ 144 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGRLVALDAETGKQVWKFGNNDQVPP 144 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCeEEEEECCCCCEeeeecCCCCcCc
Confidence 568899988754 86533221 01 1112234455 77776422 2578899988764 765432211
Q ss_pred -cccceeeEEeCCeeee
Q psy14436 84 -RRSGLGPGSLQLTLPT 99 (133)
Q Consensus 84 -~r~~~~~~~~~~~iy~ 99 (133)
..-..+.++.++.+|+
T Consensus 145 ~~~i~ssP~v~~~~v~v 161 (488)
T cd00216 145 GYTMTGAPTIVKKLVII 161 (488)
T ss_pred ceEecCCCEEECCEEEE
Confidence 0112344556666654
No 139
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=23.44 E-value=3.5e+02 Score=20.82 Aligned_cols=62 Identities=16% Similarity=0.012 Sum_probs=37.7
Q ss_pred ecEEEEEeCCCCceeecCCCccc---ccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTR---RKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
.+++.++|..+.+-..+..+|.. ...-+..+-++++|+-=-. ......-++.+||.+.+-++
T Consensus 366 ~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~aYi~Vtt-~~g~~~~IY~iDp~TatAtK 430 (435)
T PF14298_consen 366 AKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGKAYIPVTT-EDGSDPYIYKIDPATATATK 430 (435)
T ss_pred cceEEEEEccCceeEEeccCChhhccccccceEeeCCEEEEEEee-cCCCceeEEEEcCccccccc
Confidence 56677899988877777766655 2222233446777763221 12123579999999886543
No 140
>PRK04922 tolB translocation protein TolB; Provisional
Probab=23.40 E-value=3.2e+02 Score=20.42 Aligned_cols=61 Identities=7% Similarity=-0.077 Sum_probs=35.6
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECC-EEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
..++.+|..+++-..+...+..... ....-++ +|++....++ ...++.+|+.+++-+++..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~-~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGA-PSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccC-ceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECcc
Confidence 4688899988877766544322111 1122234 5654433222 2578999999888777653
No 141
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=22.96 E-value=3.2e+02 Score=20.17 Aligned_cols=51 Identities=8% Similarity=0.164 Sum_probs=32.9
Q ss_pred ECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeCCeeeeecCce
Q psy14436 46 FNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSVK 104 (133)
Q Consensus 46 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~ 104 (133)
++++||+.-- ...++..+|+.+++.+.+..+|..-. +++-+ |.+.++|-++
T Consensus 211 hdgrLwvlds-----gtGev~~vD~~~G~~e~Va~vpG~~r--GL~f~-G~llvVgmSk 261 (335)
T TIGR03032 211 YQGKLWLLNS-----GRGELGYVDPQAGKFQPVAFLPGFTR--GLAFA-GDFAFVGLSK 261 (335)
T ss_pred eCCeEEEEEC-----CCCEEEEEcCCCCcEEEEEECCCCCc--cccee-CCEEEEEecc
Confidence 4667777643 23678889999999998887774322 33333 6665555543
No 142
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=22.95 E-value=69 Score=17.98 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=15.9
Q ss_pred eeecEEEEEeCCCCceeecC
Q psy14436 13 QLQVSVERFDPKLNRWTAMA 32 (133)
Q Consensus 13 ~~~~~~~~yd~~t~~W~~~~ 32 (133)
...+.++.||..+.+|+.+.
T Consensus 51 ~l~~~l~~~D~~~~~~~~i~ 70 (84)
T PF05237_consen 51 PLSGKLLTIDLLNMSFRSIR 70 (84)
T ss_dssp --BTEEEEEETTTTEEEEEE
T ss_pred chhhheeeEECCCCeEEEEe
Confidence 34678999999999998875
No 143
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=22.30 E-value=2.8e+02 Score=19.34 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=26.6
Q ss_pred CCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 33 PMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 33 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
.+|.+-.+.+.++.++.+|.--. ....+-+||+.+++=.
T Consensus 64 ~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~v~ 102 (250)
T PF02191_consen 64 KLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVV 102 (250)
T ss_pred EEeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCcEE
Confidence 44555556666777877776422 3578999999998644
No 144
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=22.27 E-value=90 Score=18.01 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=14.6
Q ss_pred ccCeEEEEeCCCCceeeCC
Q psy14436 61 ELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 61 ~~~~~~~yd~~~~~W~~~~ 79 (133)
....+.+|||.+++.+.+.
T Consensus 35 ~~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp --EEEEEEETTTTEEEEEE
T ss_pred CCcCEEEEECCCCeEEEeh
Confidence 4568999999999987764
No 145
>KOG0308|consensus
Probab=22.20 E-value=4.4e+02 Score=21.55 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=15.6
Q ss_pred ECCEEEEEecCCCCCccCeEEEEeCCCC
Q psy14436 46 FNNVIYAVGGRDDSMELSSAEKYNPHTN 73 (133)
Q Consensus 46 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 73 (133)
-++.+++-||.+ ..+..+|..+.
T Consensus 128 k~~~lvaSgGLD-----~~IflWDin~~ 150 (735)
T KOG0308|consen 128 KNNELVASGGLD-----RKIFLWDINTG 150 (735)
T ss_pred cCceeEEecCCC-----ccEEEEEccCc
Confidence 367888889876 34666666654
No 146
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=22.02 E-value=2.4e+02 Score=18.53 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEec
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGG 55 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 55 (133)
.+-..||+.++.-..-.+.+.+........- .+.||.+|-
T Consensus 120 cHgS~FD~~tGg~v~~GPA~~pLp~~~L~~d~~~d~iyAvG~ 161 (171)
T cd03475 120 CHGSTYDPYKGGVVLTGPAPRPLPAVILEYDSSTDDLYAVGT 161 (171)
T ss_pred CCCCEEeCCCCCeEcCCCCCCCcCEeEEEEeCCCCcEEEEec
Confidence 3445799988765443332333333333333 367998874
No 147
>PF07599 DUF1563: Protein of unknown function (DUF1563); InterPro: IPR011457 This is a small family of short hypothetical proteins in Leptospira interrogans.
Probab=21.53 E-value=29 Score=16.61 Aligned_cols=6 Identities=33% Similarity=0.047 Sum_probs=2.5
Q ss_pred CCceec
Q psy14436 1 MNEDFN 6 (133)
Q Consensus 1 ~~~~~~ 6 (133)
||+|+.
T Consensus 1 mniiL~ 6 (43)
T PF07599_consen 1 MNIILI 6 (43)
T ss_pred Ccchhh
Confidence 444443
No 148
>PLN00181 protein SPA1-RELATED; Provisional
Probab=20.72 E-value=4.8e+02 Score=21.42 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=14.1
Q ss_pred CCEEEEEecCCCCCccCeEEEEeCCCC
Q psy14436 47 NNVIYAVGGRDDSMELSSAEKYNPHTN 73 (133)
Q Consensus 47 ~~~iyv~GG~~~~~~~~~~~~yd~~~~ 73 (133)
++.+++.|+.+ ..+..||+.+.
T Consensus 629 ~g~~latgs~d-----g~I~iwD~~~~ 650 (793)
T PLN00181 629 SGRSLAFGSAD-----HKVYYYDLRNP 650 (793)
T ss_pred CCCEEEEEeCC-----CeEEEEECCCC
Confidence 35666777643 46778887654
No 149
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=20.49 E-value=1.9e+02 Score=16.69 Aligned_cols=9 Identities=22% Similarity=0.187 Sum_probs=4.5
Q ss_pred EEeCCCCce
Q psy14436 20 RFDPKLNRW 28 (133)
Q Consensus 20 ~yd~~t~~W 28 (133)
+||..+++.
T Consensus 68 ~Fdl~tG~~ 76 (101)
T TIGR02377 68 CFDYRTGEA 76 (101)
T ss_pred EEECCCCcc
Confidence 455555544
No 150
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.39 E-value=3.5e+02 Score=19.69 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=40.8
Q ss_pred ecEEEEEeCCCCceeecCCCcccc--cceEEEEECC-EEEEEecCCCCCccCeEEEEeCCCCceeeCCCCC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRR--KHLGCAVFNN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMT 82 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r--~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 82 (133)
-.-..+||+.+.+-...-..|..| ++|++.+-++ .||..=.- -......+-+||.. +...++...+
T Consensus 27 G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd-~~~g~G~IgVyd~~-~~~~ri~E~~ 95 (305)
T PF07433_consen 27 GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND-YETGRGVIGVYDAA-RGYRRIGEFP 95 (305)
T ss_pred CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc-cCCCcEEEEEEECc-CCcEEEeEec
Confidence 355778999998765543445555 4566666555 66654221 12234678899998 6677776554
No 151
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=20.15 E-value=2.6e+02 Score=18.07 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=13.0
Q ss_pred CCEEEEEecCCCCCccCeEEEEeCCCC
Q psy14436 47 NNVIYAVGGRDDSMELSSAEKYNPHTN 73 (133)
Q Consensus 47 ~~~iyv~GG~~~~~~~~~~~~yd~~~~ 73 (133)
++..+++++.+ ..+..||..+.
T Consensus 62 ~~~~l~~~~~~-----~~i~i~~~~~~ 83 (289)
T cd00200 62 DGTYLASGSSD-----KTIRLWDLETG 83 (289)
T ss_pred CCCEEEEEcCC-----CeEEEEEcCcc
Confidence 34455555542 56777887764
Done!