Query psy14436
Match_columns 133
No_of_seqs 139 out of 1541
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 19:48:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xn4_A Kelch-like protein 2; s 100.0 3.3E-27 1.1E-31 163.5 13.8 130 3-132 64-233 (302)
2 1zgk_A Kelch-like ECH-associat 99.9 7E-27 2.4E-31 162.5 14.9 130 3-132 124-291 (308)
3 2xn4_A Kelch-like protein 2; s 99.9 1.4E-26 4.7E-31 160.4 13.9 130 3-132 111-280 (302)
4 3ii7_A Kelch-like protein 7; p 99.9 1.1E-26 3.8E-31 161.1 13.2 130 3-132 104-276 (306)
5 4asc_A Kelch repeat and BTB do 99.9 2.2E-26 7.7E-31 160.3 12.6 131 3-133 151-282 (315)
6 4asc_A Kelch repeat and BTB do 99.9 1.2E-25 4.1E-30 156.7 12.6 122 3-133 101-226 (315)
7 2vpj_A Kelch-like protein 12; 99.9 3.1E-25 1E-29 153.5 13.5 122 3-133 162-283 (301)
8 2woz_A Kelch repeat and BTB do 99.9 1.3E-25 4.5E-30 156.6 11.7 131 3-133 161-292 (318)
9 1zgk_A Kelch-like ECH-associat 99.9 1.4E-25 4.8E-30 156.0 11.4 122 3-133 73-198 (308)
10 2vpj_A Kelch-like protein 12; 99.9 2.7E-25 9.2E-30 153.7 12.7 122 3-133 65-189 (301)
11 2woz_A Kelch repeat and BTB do 99.9 2.5E-25 8.5E-30 155.2 12.0 122 3-133 112-236 (318)
12 3ii7_A Kelch-like protein 7; p 99.9 2.8E-25 9.7E-30 154.0 11.7 125 3-133 58-183 (306)
13 2uvk_A YJHT; unknown function, 99.9 3.3E-23 1.1E-27 146.3 12.7 101 3-103 68-209 (357)
14 2uvk_A YJHT; unknown function, 99.9 1E-22 3.4E-27 143.8 11.2 126 4-133 23-182 (357)
15 2zwa_A Leucine carboxyl methyl 99.9 8.5E-23 2.9E-27 155.7 11.3 118 3-133 400-527 (695)
16 2zwa_A Leucine carboxyl methyl 99.9 1.6E-21 5.4E-26 148.7 9.8 117 3-131 454-580 (695)
17 1k3i_A Galactose oxidase precu 99.8 3.3E-20 1.1E-24 140.5 7.6 117 3-132 200-327 (656)
18 1k3i_A Galactose oxidase precu 99.8 2.4E-19 8.3E-24 135.7 8.2 95 3-102 256-357 (656)
19 3mbr_X Glutamine cyclotransfer 97.2 0.0066 2.3E-07 40.8 10.0 90 15-111 42-131 (243)
20 3nol_A Glutamine cyclotransfer 96.8 0.015 5.1E-07 39.5 9.3 89 15-110 64-152 (262)
21 3nok_A Glutaminyl cyclase; bet 96.4 0.027 9.2E-07 38.4 8.4 86 18-111 77-162 (268)
22 2iwa_A Glutamine cyclotransfer 96.2 0.09 3.1E-06 35.7 10.0 90 15-111 43-133 (266)
23 3mbr_X Glutamine cyclotransfer 95.2 0.23 7.7E-06 33.3 8.9 61 40-103 23-83 (243)
24 3dsm_A Uncharacterized protein 94.2 0.6 2E-05 32.0 9.4 78 16-101 203-285 (328)
25 3nol_A Glutamine cyclotransfer 94.1 0.35 1.2E-05 32.8 7.9 72 29-103 32-105 (262)
26 3dsm_A Uncharacterized protein 93.4 1.2 4.3E-05 30.4 11.1 79 15-101 16-101 (328)
27 3q7m_A Lipoprotein YFGL, BAMB; 93.0 1.5 5.1E-05 30.3 9.9 76 16-101 287-366 (376)
28 2iwa_A Glutamine cyclotransfer 88.5 2.3 7.9E-05 28.7 7.1 60 41-103 24-84 (266)
29 3hfq_A Uncharacterized protein 87.8 1.8 6.2E-05 29.3 6.4 74 4-80 5-80 (347)
30 3q7m_A Lipoprotein YFGL, BAMB; 87.6 5.2 0.00018 27.5 12.7 86 16-110 63-159 (376)
31 3jrp_A Fusion protein of prote 87.4 2.4 8.1E-05 28.7 6.8 60 17-81 34-97 (379)
32 1k8k_C P40, ARP2/3 complex 41 87.4 3.8 0.00013 27.7 7.8 58 16-78 30-89 (372)
33 4gga_A P55CDC, cell division c 86.3 5.4 0.00019 27.9 8.3 79 16-101 125-205 (420)
34 3nok_A Glutaminyl cyclase; bet 85.4 4.8 0.00016 27.3 7.2 57 41-103 58-114 (268)
35 3jro_A Fusion protein of prote 84.6 3.3 0.00011 31.8 6.9 60 17-81 32-95 (753)
36 3scy_A Hypothetical bacterial 82.9 8.8 0.0003 26.0 8.2 76 3-81 15-95 (361)
37 2ad6_A Methanol dehydrogenase 82.9 11 0.00036 28.2 8.9 75 15-99 443-522 (571)
38 1flg_A Protein (quinoprotein e 82.7 10 0.00036 28.4 8.8 75 15-99 465-544 (582)
39 1w6s_A Methanol dehydrogenase 82.3 14 0.00047 28.0 9.3 75 15-99 452-531 (599)
40 3dwl_C Actin-related protein 2 82.2 2.4 8.1E-05 29.0 4.9 56 17-77 34-92 (377)
41 1gxr_A ESG1, transducin-like e 81.5 9.2 0.00031 25.2 8.1 55 16-75 119-175 (337)
42 3jrp_A Fusion protein of prote 78.4 13 0.00043 25.0 8.0 61 3-73 71-135 (379)
43 3v7d_B Cell division control p 77.9 15 0.00053 25.7 8.8 52 17-74 291-343 (464)
44 4aez_A CDC20, WD repeat-contai 77.6 11 0.00039 26.0 7.2 55 16-75 113-168 (401)
45 1p22_A F-BOX/WD-repeat protein 77.2 10 0.00035 26.6 6.9 51 17-74 277-327 (435)
46 2hz6_A Endoplasmic reticulum t 77.0 2.2 7.4E-05 29.8 3.3 61 3-77 11-75 (369)
47 2pm7_B Protein transport prote 76.3 14 0.00048 24.4 8.1 58 17-79 32-93 (297)
48 3bws_A Protein LP49; two-domai 75.4 8.7 0.0003 26.7 6.1 57 17-78 102-159 (433)
49 3bg1_A Protein SEC13 homolog; 74.4 12 0.00041 25.0 6.4 57 17-78 36-96 (316)
50 4e54_B DNA damage-binding prot 73.8 18 0.00062 25.4 7.5 62 3-74 179-242 (435)
51 3g4e_A Regucalcin; six bladed 73.1 11 0.00036 25.1 5.9 55 16-80 35-90 (297)
52 4e54_B DNA damage-binding prot 72.7 22 0.00075 24.9 9.7 66 3-78 134-202 (435)
53 1p22_A F-BOX/WD-repeat protein 70.9 23 0.0008 24.7 7.5 52 17-75 154-205 (435)
54 2cn3_A Xyloglucanase, beta-1,4 70.6 34 0.0012 26.3 9.8 77 26-102 232-321 (737)
55 3vl1_A 26S proteasome regulato 69.8 24 0.00081 24.2 7.5 54 16-77 78-133 (420)
56 3vgz_A Uncharacterized protein 69.1 13 0.00044 24.8 5.7 54 16-77 253-308 (353)
57 1rwi_B Serine/threonine-protei 68.8 20 0.00068 22.9 7.3 78 16-101 46-125 (270)
58 4ggc_A P55CDC, cell division c 68.5 21 0.00074 23.2 8.0 55 16-75 45-101 (318)
59 3jro_A Fusion protein of prote 68.5 23 0.00079 27.1 7.5 61 3-73 69-133 (753)
60 1l0q_A Surface layer protein; 68.0 11 0.00039 25.6 5.2 55 16-77 12-68 (391)
61 3ju4_A Endo-N-acetylneuraminid 67.6 35 0.0012 25.2 8.2 65 40-104 341-407 (670)
62 3mmy_A MRNA export factor; mRN 67.6 24 0.00082 23.4 8.3 66 3-78 56-123 (368)
63 1yiq_A Quinohemoprotein alcoho 67.5 39 0.0013 25.8 11.8 79 16-100 80-173 (689)
64 1erj_A Transcriptional repress 66.3 24 0.00083 24.3 6.7 53 17-76 146-200 (393)
65 1l0q_A Surface layer protein; 66.2 16 0.00053 24.9 5.7 55 16-77 138-194 (391)
66 1sq9_A Antiviral protein SKI8; 66.2 25 0.00087 23.8 6.8 69 3-81 28-115 (397)
67 4ery_A WD repeat-containing pr 66.1 25 0.00086 23.1 8.2 52 17-75 88-141 (312)
68 2ovr_B FBW7, F-BOX/WD repeat p 66.1 31 0.0011 24.1 10.0 52 17-75 300-351 (445)
69 3fm0_A Protein CIAO1; WDR39,SG 65.8 26 0.0009 23.7 6.7 56 17-77 39-97 (345)
70 1kv9_A Type II quinohemoprotei 65.7 42 0.0014 25.5 11.9 79 16-100 76-168 (668)
71 2ad6_A Methanol dehydrogenase 65.7 39 0.0013 25.2 11.5 80 16-101 73-167 (571)
72 1gxr_A ESG1, transducin-like e 65.7 25 0.00087 23.0 6.6 52 17-75 164-217 (337)
73 2ovr_B FBW7, F-BOX/WD repeat p 65.6 32 0.0011 24.0 10.0 55 17-76 340-395 (445)
74 3bws_A Protein LP49; two-domai 65.5 20 0.00068 24.8 6.2 53 16-75 283-337 (433)
75 1ri6_A Putative isomerase YBHE 65.5 15 0.00053 24.2 5.5 65 16-83 253-321 (343)
76 3ei3_B DNA damage-binding prot 63.7 31 0.0011 23.4 10.0 58 17-79 97-157 (383)
77 2pbi_B Guanine nucleotide-bind 63.6 32 0.0011 23.4 9.2 51 17-74 221-273 (354)
78 3zwl_B Eukaryotic translation 62.5 31 0.0011 22.9 7.5 54 17-77 55-110 (369)
79 1kb0_A Quinohemoprotein alcoho 62.3 50 0.0017 25.2 11.7 80 16-101 87-181 (677)
80 1got_B GT-beta; complex (GTP-b 62.1 33 0.0011 23.1 7.8 51 17-74 165-217 (340)
81 2hqs_A Protein TOLB; TOLB, PAL 61.2 33 0.0011 24.0 6.7 61 16-81 203-265 (415)
82 2aq5_A Coronin-1A; WD40 repeat 61.1 37 0.0013 23.3 8.6 63 3-75 146-210 (402)
83 1jmx_B Amine dehydrogenase; ox 60.9 33 0.0011 22.6 7.2 57 15-76 20-78 (349)
84 3e5z_A Putative gluconolactona 59.7 31 0.0011 22.5 6.1 56 16-79 50-106 (296)
85 2b4w_A Hypothetical protein, c 59.7 30 0.001 23.8 5.8 59 44-103 37-98 (315)
86 3lp9_A LS-24; SEED albumin, pl 59.3 7.1 0.00024 25.7 2.7 56 46-111 71-145 (227)
87 1pby_B Quinohemoprotein amine 56.0 39 0.0014 22.0 6.9 56 16-76 11-69 (337)
88 2z2n_A Virginiamycin B lyase; 55.9 38 0.0013 21.8 9.7 78 16-101 162-242 (299)
89 1rwi_B Serine/threonine-protei 55.9 37 0.0012 21.6 7.9 56 16-77 87-143 (270)
90 1vyh_C Platelet-activating fac 55.8 49 0.0017 23.0 7.4 51 17-74 131-183 (410)
91 3c5m_A Oligogalacturonate lyas 55.5 45 0.0015 22.5 8.0 80 16-100 216-299 (396)
92 1yiq_A Quinohemoprotein alcoho 54.7 69 0.0024 24.5 9.1 75 16-100 455-534 (689)
93 4ery_A WD repeat-containing pr 54.7 42 0.0014 22.0 7.4 61 3-75 121-183 (312)
94 4a2l_A BT_4663, two-component 54.5 72 0.0024 24.5 8.2 58 16-80 427-488 (795)
95 3u4y_A Uncharacterized protein 54.1 44 0.0015 22.0 7.2 54 15-75 19-74 (331)
96 1got_B GT-beta; complex (GTP-b 53.9 47 0.0016 22.3 9.3 51 17-74 207-259 (340)
97 3zwl_B Eukaryotic translation 53.8 45 0.0015 22.0 7.7 54 16-76 197-253 (369)
98 3ow8_A WD repeat-containing pr 53.8 47 0.0016 22.2 8.4 52 17-75 187-240 (321)
99 3v9f_A Two-component system se 53.7 67 0.0023 24.6 7.7 84 17-109 559-652 (781)
100 3c5m_A Oligogalacturonate lyas 52.7 50 0.0017 22.2 8.2 64 15-80 167-233 (396)
101 3v9f_A Two-component system se 51.9 74 0.0025 24.4 7.7 57 16-79 427-485 (781)
102 3azo_A Aminopeptidase; POP fam 51.4 71 0.0024 23.6 8.1 63 16-81 217-283 (662)
103 2z3z_A Dipeptidyl aminopeptida 51.0 75 0.0026 23.7 9.6 63 15-80 283-352 (706)
104 2z2n_A Virginiamycin B lyase; 50.8 47 0.0016 21.3 9.8 55 16-78 204-260 (299)
105 2qc5_A Streptogramin B lactona 50.7 47 0.0016 21.3 9.8 78 16-101 41-121 (300)
106 3no2_A Uncharacterized protein 50.2 52 0.0018 21.7 7.9 52 16-77 15-71 (276)
107 1pby_B Quinohemoprotein amine 49.2 52 0.0018 21.4 7.6 51 17-75 220-272 (337)
108 2ynn_A Coatomer subunit beta'; 48.8 54 0.0019 21.5 6.6 51 17-74 36-88 (304)
109 1kb0_A Quinohemoprotein alcoho 48.8 87 0.003 23.9 8.7 63 42-110 72-144 (677)
110 3v7d_B Cell division control p 48.7 65 0.0022 22.4 9.7 54 17-77 373-426 (464)
111 2p4o_A Hypothetical protein; p 48.6 57 0.0019 21.6 6.9 56 16-77 189-246 (306)
112 2ghs_A AGR_C_1268P; regucalcin 48.5 59 0.002 21.8 8.4 55 16-80 71-126 (326)
113 2dg1_A DRP35, lactonase; beta 48.4 56 0.0019 21.6 9.6 59 16-76 66-125 (333)
114 3k26_A Polycomb protein EED; W 48.4 56 0.0019 21.6 6.8 52 17-75 96-150 (366)
115 4g56_B MGC81050 protein; prote 48.3 62 0.0021 22.0 7.6 52 17-75 162-216 (357)
116 2ecf_A Dipeptidyl peptidase IV 48.3 84 0.0029 23.6 7.4 18 15-32 63-80 (741)
117 1kv9_A Type II quinohemoprotei 48.0 89 0.003 23.7 9.2 63 42-110 61-133 (668)
118 4aez_A CDC20, WD repeat-contai 47.8 65 0.0022 22.1 6.8 58 16-79 284-343 (401)
119 3sjl_D Methylamine dehydrogena 47.6 30 0.001 24.6 4.6 56 14-76 309-367 (386)
120 2pm9_A Protein WEB1, protein t 47.2 64 0.0022 21.9 8.2 50 17-73 286-338 (416)
121 3mkq_A Coatomer beta'-subunit; 47.2 91 0.0031 23.6 7.6 52 17-75 209-262 (814)
122 3odt_A Protein DOA1; ubiquitin 46.9 55 0.0019 21.0 7.5 53 17-77 206-260 (313)
123 4a2l_A BT_4663, two-component 46.9 96 0.0033 23.8 8.2 55 17-79 563-621 (795)
124 3mmy_A MRNA export factor; mRN 46.8 60 0.002 21.4 8.0 51 17-74 109-162 (368)
125 1qhu_A Protein (hemopexin); be 45.6 87 0.003 22.9 7.5 48 16-73 167-216 (460)
126 1q7f_A NHL, brain tumor CG1071 45.4 59 0.002 20.9 10.4 59 16-78 185-244 (286)
127 3mkq_A Coatomer beta'-subunit; 45.3 76 0.0026 24.0 6.8 54 16-76 35-90 (814)
128 2qc5_A Streptogramin B lactona 45.2 58 0.002 20.8 8.6 55 16-77 83-138 (300)
129 3ott_A Two-component system se 44.8 1E+02 0.0035 23.5 10.7 81 17-107 537-620 (758)
130 1flg_A Protein (quinoprotein e 44.0 99 0.0034 23.1 9.0 63 42-110 63-133 (582)
131 3lrv_A PRE-mRNA-splicing facto 43.3 71 0.0024 21.3 9.1 26 47-77 138-163 (343)
132 3lrv_A PRE-mRNA-splicing facto 42.5 74 0.0025 21.2 8.3 54 17-75 150-204 (343)
133 1r5m_A SIR4-interacting protei 42.4 76 0.0026 21.4 7.5 52 17-75 270-322 (425)
134 3pe7_A Oligogalacturonate lyas 41.7 78 0.0027 21.3 7.5 65 16-81 168-234 (388)
135 3vgz_A Uncharacterized protein 41.7 73 0.0025 21.0 7.9 54 15-75 68-123 (353)
136 2mad_H Methylamine dehydrogena 40.5 78 0.0027 22.0 5.8 55 15-76 297-354 (373)
137 4gqb_B Methylosome protein 50; 40.5 84 0.0029 21.3 7.3 53 17-74 193-248 (344)
138 1pjx_A Dfpase, DIISOPROPYLFLUO 40.1 75 0.0025 20.6 8.2 57 15-78 45-106 (314)
139 3syx_A Sprouty-related, EVH1 d 39.8 55 0.0019 19.6 4.2 20 14-33 16-35 (130)
140 3f3f_A Nucleoporin SEH1; struc 39.1 77 0.0026 20.5 9.6 52 17-73 34-91 (351)
141 1q67_A Decapping protein invol 37.7 24 0.00083 23.1 2.5 20 13-32 41-60 (231)
142 3vl1_A 26S proteasome regulato 37.6 95 0.0032 21.1 9.1 53 17-74 270-324 (420)
143 2lyd_A Decapping protein 1; DC 37.1 27 0.00093 21.0 2.6 19 14-32 36-54 (134)
144 3dm0_A Maltose-binding peripla 36.9 1.1E+02 0.0037 23.0 6.4 51 17-74 542-594 (694)
145 1vm9_A Toluene-4-monooxygenase 36.8 53 0.0018 18.4 3.8 33 19-53 68-100 (111)
146 4gga_A P55CDC, cell division c 35.9 1.1E+02 0.0036 21.2 7.6 52 17-74 302-355 (420)
147 1w6s_A Methanol dehydrogenase 35.3 1.4E+02 0.0049 22.5 9.5 79 16-100 73-172 (599)
148 3pe7_A Oligogalacturonate lyas 35.2 1E+02 0.0035 20.7 6.8 66 15-81 215-282 (388)
149 3ott_A Two-component system se 35.1 1.5E+02 0.0051 22.6 8.9 55 16-78 82-136 (758)
150 3dqy_A Toluene 1,2-dioxygenase 34.7 61 0.0021 18.0 4.3 34 19-53 66-99 (106)
151 2bkl_A Prolyl endopeptidase; m 34.6 1.5E+02 0.005 22.4 8.0 62 15-80 251-315 (695)
152 2oiz_A Aromatic amine dehydrog 34.2 1.1E+02 0.0038 20.9 7.3 54 15-78 285-340 (361)
153 4ggc_A P55CDC, cell division c 33.6 95 0.0033 19.9 7.0 24 47-74 252-275 (318)
154 2jo6_A Nitrite reductase [NAD( 33.6 66 0.0023 18.1 4.2 33 19-53 78-110 (113)
155 4aow_A Guanine nucleotide-bind 33.4 95 0.0032 20.2 5.2 23 47-74 226-248 (340)
156 2ecf_A Dipeptidyl peptidase IV 33.4 1.5E+02 0.0052 22.2 8.4 62 15-80 311-376 (741)
157 1q7f_A NHL, brain tumor CG1071 33.2 96 0.0033 19.9 10.5 82 16-102 142-225 (286)
158 2z3z_A Dipeptidyl aminopeptida 32.6 1.5E+02 0.0053 22.0 8.8 62 15-79 334-398 (706)
159 3b7f_A Glycosyl hydrolase, BNR 32.3 1.2E+02 0.0042 20.8 8.4 61 18-80 33-98 (394)
160 3hxj_A Pyrrolo-quinoline quino 31.2 1.1E+02 0.0038 19.9 8.5 80 18-109 80-162 (330)
161 1qks_A Cytochrome CD1 nitrite 30.8 95 0.0033 23.2 5.2 48 16-71 177-226 (567)
162 2aq5_A Coronin-1A; WD40 repeat 30.4 1.3E+02 0.0044 20.5 8.3 54 16-74 245-301 (402)
163 2hqs_A Protein TOLB; TOLB, PAL 30.3 1.4E+02 0.0047 20.8 8.1 59 16-79 247-307 (415)
164 2ojh_A Uncharacterized protein 30.3 1E+02 0.0035 19.3 8.2 59 17-80 154-214 (297)
165 3c0d_A Putative nitrite reduct 30.1 49 0.0017 19.0 2.9 35 19-55 76-110 (119)
166 2xdw_A Prolyl endopeptidase; a 30.0 1.8E+02 0.0061 21.9 10.0 63 15-80 258-331 (710)
167 2ot9_A Hypothetical protein; Y 29.4 12 0.0004 23.9 0.0 100 4-105 56-167 (180)
168 1yfq_A Cell cycle arrest prote 29.0 1.2E+02 0.0042 19.7 8.9 57 17-80 34-97 (342)
169 2qkl_A DCP1 protein, SPBC3B9.2 28.7 16 0.00054 21.8 0.5 19 14-32 31-49 (127)
170 1yr2_A Prolyl oligopeptidase; 28.2 2E+02 0.0068 21.9 11.2 63 15-80 293-360 (741)
171 3gce_A Ferredoxin component of 28.1 89 0.003 17.9 4.2 38 17-55 75-112 (121)
172 3iz6_a 40S ribosomal protein R 28.0 1.4E+02 0.0049 20.2 8.4 24 47-75 309-332 (380)
173 3dr2_A Exported gluconolactona 27.3 72 0.0024 21.0 3.7 57 15-74 168-226 (305)
174 2gop_A Trilobed protease; beta 27.1 1.4E+02 0.0047 19.7 5.4 61 14-81 41-103 (347)
175 2de6_D Ferredoxin component of 26.8 92 0.0031 17.6 3.8 36 19-55 70-105 (115)
176 1pex_A Collagenase-3, MMP-13; 26.4 1.3E+02 0.0044 19.2 7.1 51 16-75 136-195 (207)
177 2qpz_A Naphthalene 1,2-dioxyge 26.1 88 0.003 17.1 4.3 33 19-52 68-100 (103)
178 1qc6_A EVH1 domain from ENA/VA 24.7 71 0.0024 18.8 3.0 19 14-32 9-27 (130)
179 3kvp_A Uncharacterized protein 24.6 45 0.0016 17.5 1.8 16 16-31 40-55 (72)
180 2i7f_A Ferredoxin component of 24.1 1E+02 0.0034 17.1 3.9 34 19-53 69-102 (108)
181 3sfz_A APAF-1, apoptotic pepti 24.0 2.9E+02 0.0098 22.3 7.3 57 17-79 984-1041(1249)
182 3gre_A Serine/threonine-protei 23.1 1.9E+02 0.0063 19.8 9.9 55 16-75 192-248 (437)
183 1evh_A WH1 domain, protein (ME 23.1 75 0.0026 18.2 2.8 19 14-32 9-27 (112)
184 1xfd_A DIP, dipeptidyl aminope 22.9 2.3E+02 0.008 21.0 6.1 63 17-79 38-107 (723)
185 4a11_B DNA excision repair pro 22.7 1.8E+02 0.006 19.4 5.5 52 16-74 314-367 (408)
186 3sfz_A APAF-1, apoptotic pepti 22.6 97 0.0033 25.0 4.2 23 47-74 1096-1118(1249)
187 1ddw_A GLGF-domain protein hom 22.5 85 0.0029 18.3 2.9 20 14-33 9-29 (120)
188 3i2n_A WD repeat-containing pr 22.4 1.7E+02 0.0057 19.1 9.3 54 17-75 140-202 (357)
189 3c75_H MADH, methylamine dehyd 22.2 1.5E+02 0.0053 21.2 4.8 55 15-76 349-406 (426)
190 1fqt_A Rieske-type ferredoxin 22.1 1.1E+02 0.0039 17.0 4.2 34 19-53 71-104 (112)
191 3pbp_B Nucleoporin NUP116/NSP1 22.0 62 0.0021 19.8 2.3 16 62-77 124-139 (148)
192 1k32_A Tricorn protease; prote 21.8 3.1E+02 0.011 21.9 7.7 57 16-79 358-416 (1045)
193 3ju4_A Endo-N-acetylneuraminid 21.7 2.2E+02 0.0075 21.2 5.3 51 5-55 354-405 (670)
194 3nf5_A Nucleoporin NUP116; nuc 21.5 60 0.002 20.3 2.2 15 63-77 136-150 (164)
195 2jza_A Nitrite reductase [NAD( 21.0 82 0.0028 18.3 2.7 35 18-54 74-108 (130)
196 1qhu_A Protein (hemopexin); be 20.4 2.6E+02 0.0088 20.5 8.5 49 47-105 158-208 (460)
197 1oqe_K Tumor necrosis factor r 20.3 69 0.0023 13.8 2.1 15 18-32 7-21 (31)
198 4aay_B AROB; oxidoreductase, r 20.2 1.2E+02 0.0041 18.9 3.5 36 18-54 125-162 (175)
199 4fmw_A RNA (guanine-9-)-methyl 20.0 39 0.0013 21.7 1.1 11 94-104 119-129 (197)
No 1
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.95 E-value=3.3e-27 Score=163.54 Aligned_cols=130 Identities=32% Similarity=0.538 Sum_probs=111.4
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMT 82 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 82 (133)
.+++||..+...++++++||+.+++|.++++||.+|..|++++++++||++||.+.....+++++||+.+++|++++++|
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p 143 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN 143 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC
Confidence 45678888777789999999999999999999999999999999999999999887667889999999999999999999
Q ss_pred CcccceeeEEeCCeeeeecCce----------------------------------------EEEEeCCCCccceeeeee
Q psy14436 83 SRRSGLGPGSLQLTLPTLTSVK----------------------------------------FTYIIPGDPAERLKFTRE 122 (133)
Q Consensus 83 ~~r~~~~~~~~~~~iy~~gG~~----------------------------------------~~~v~gg~~~~~~~~~~~ 122 (133)
.+|..+++++++++||++||.. .+|++||........+++
T Consensus 144 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 223 (302)
T 2xn4_A 144 TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVE 223 (302)
T ss_dssp SCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEE
T ss_pred CcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEE
Confidence 9999999999999998888752 456666655555555667
Q ss_pred eecCCCCCcc
Q psy14436 123 EKEPPHMYWY 132 (133)
Q Consensus 123 ~~~~~~~~W~ 132 (133)
.||+.++.|.
T Consensus 224 ~yd~~~~~W~ 233 (302)
T 2xn4_A 224 VYDPTTNAWR 233 (302)
T ss_dssp EEETTTTEEE
T ss_pred EEeCCCCCEe
Confidence 7777776664
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.95 E-value=7e-27 Score=162.54 Aligned_cols=130 Identities=34% Similarity=0.487 Sum_probs=115.1
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMT 82 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 82 (133)
+++.||..+...++++++||+.+++|+.++++|.+|..|++++++++||++||.+.....+++++||+.+++|++++++|
T Consensus 124 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p 203 (308)
T 1zgk_A 124 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN 203 (308)
T ss_dssp EEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS
T ss_pred EEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC
Confidence 46778888888899999999999999999999999999999999999999999986666889999999999999999999
Q ss_pred CcccceeeEEeCCeeeeecCce--------------------------------------EEEEeCCCCccceeeeeeee
Q psy14436 83 SRRSGLGPGSLQLTLPTLTSVK--------------------------------------FTYIIPGDPAERLKFTREEK 124 (133)
Q Consensus 83 ~~r~~~~~~~~~~~iy~~gG~~--------------------------------------~~~v~gg~~~~~~~~~~~~~ 124 (133)
.+|..+++++++++||++||.. .+|++||........+++.|
T Consensus 204 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~y 283 (308)
T 1zgk_A 204 TIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECY 283 (308)
T ss_dssp SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEE
T ss_pred CccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEE
Confidence 9999999999999999998852 56778886666666678888
Q ss_pred cCCCCCcc
Q psy14436 125 EPPHMYWY 132 (133)
Q Consensus 125 ~~~~~~W~ 132 (133)
|+.+++|.
T Consensus 284 d~~~~~W~ 291 (308)
T 1zgk_A 284 DPDTDTWS 291 (308)
T ss_dssp ETTTTEEE
T ss_pred cCCCCEEe
Confidence 88888885
No 3
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=160.42 Aligned_cols=130 Identities=35% Similarity=0.501 Sum_probs=117.2
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCC--CccCeEEEEeCCCCceeeCCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDS--MELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~yd~~~~~W~~~~~ 80 (133)
++++||..+...++++++||+.+++|..+++||.+|..|++++++++||++||.+.. ...+++++||+.+++|+++++
T Consensus 111 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~ 190 (302)
T 2xn4_A 111 LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE 190 (302)
T ss_dssp EEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC
T ss_pred EEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC
Confidence 467788887778999999999999999999999999999999999999999998643 347889999999999999999
Q ss_pred CCCcccceeeEEeCCeeeeecCce--------------------------------------EEEEeCCCCccceeeeee
Q psy14436 81 MTSRRSGLGPGSLQLTLPTLTSVK--------------------------------------FTYIIPGDPAERLKFTRE 122 (133)
Q Consensus 81 ~~~~r~~~~~~~~~~~iy~~gG~~--------------------------------------~~~v~gg~~~~~~~~~~~ 122 (133)
+|.+|..+++++++++||++||.. .+|++||........+++
T Consensus 191 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~ 270 (302)
T 2xn4_A 191 MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVE 270 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEE
T ss_pred CccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEE
Confidence 999999999999999999999962 579999977766677899
Q ss_pred eecCCCCCcc
Q psy14436 123 EKEPPHMYWY 132 (133)
Q Consensus 123 ~~~~~~~~W~ 132 (133)
.||+.++.|.
T Consensus 271 ~yd~~~~~W~ 280 (302)
T 2xn4_A 271 YYNPTTDKWT 280 (302)
T ss_dssp EEETTTTEEE
T ss_pred EEcCCCCeEE
Confidence 9999999996
No 4
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=161.11 Aligned_cols=130 Identities=22% Similarity=0.276 Sum_probs=111.4
Q ss_pred ceeccccc-CCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCc----cCeEEEEeCCCCceee
Q psy14436 3 EDFNHGYR-ELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSME----LSSAEKYNPHTNTWLP 77 (133)
Q Consensus 3 ~~~~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~~~~yd~~~~~W~~ 77 (133)
++++||.+ +...++++++||+.+++|+++++||.+|..|+++.++++||++||...... .+++++||+.+++|++
T Consensus 104 iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~ 183 (306)
T 3ii7_A 104 IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE 183 (306)
T ss_dssp EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE
T ss_pred EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE
Confidence 45678887 666789999999999999999999999999999999999999999865444 7899999999999999
Q ss_pred CCCCCCcccceeeEEeCCeeeeecCce--------------------------------------EEEEeCCCCccceee
Q psy14436 78 IVAMTSRRSGLGPGSLQLTLPTLTSVK--------------------------------------FTYIIPGDPAERLKF 119 (133)
Q Consensus 78 ~~~~~~~r~~~~~~~~~~~iy~~gG~~--------------------------------------~~~v~gg~~~~~~~~ 119 (133)
++++|.+|..|++++++++||++||.. .+|++||........
T Consensus 184 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~ 263 (306)
T 3ii7_A 184 LCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLG 263 (306)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCC
T ss_pred CCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeee
Confidence 999999999999999999998888852 467777765555566
Q ss_pred eeeeecCCCCCcc
Q psy14436 120 TREEKEPPHMYWY 132 (133)
Q Consensus 120 ~~~~~~~~~~~W~ 132 (133)
+++.||+.+++|.
T Consensus 264 ~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 264 HILEYNTETDKWV 276 (306)
T ss_dssp EEEEEETTTTEEE
T ss_pred eEEEEcCCCCeEE
Confidence 7777777777775
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=160.35 Aligned_cols=131 Identities=25% Similarity=0.269 Sum_probs=111.2
Q ss_pred ceecccc-cCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 3 EDFNHGY-RELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 3 ~~~~GG~-~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
+++.||. .+...++++++||+.+++|+.+++||.+|..|+++.++++||++||.+.....+.+++||+.+++|++++++
T Consensus 151 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 230 (315)
T 4asc_A 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF 230 (315)
T ss_dssp EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCC
T ss_pred EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCC
Confidence 4567887 566779999999999999999999999999999999999999999988766788999999999999999999
Q ss_pred CCcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 82 TSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 82 ~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
|.+|..+++++++++||++||....-...|........+++.||+.+++|.+
T Consensus 231 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 282 (315)
T 4asc_A 231 PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG 282 (315)
T ss_dssp SSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred CCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence 9999999999999999888876542111122222456789999999999963
No 6
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=156.68 Aligned_cols=122 Identities=18% Similarity=0.237 Sum_probs=106.6
Q ss_pred ceeccccc---CCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecC-CCCCccCeEEEEeCCCCceeeC
Q psy14436 3 EDFNHGYR---ELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGR-DDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 3 ~~~~GG~~---~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
+++.||.. +...++++++||+.+++|++++++|.+|..|++++++++||++||. ......+++++||+.+++|+++
T Consensus 101 lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~ 180 (315)
T 4asc_A 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL 180 (315)
T ss_dssp EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEEC
T ss_pred EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEEC
Confidence 35678864 3667899999999999999999999999999999999999999998 4556688999999999999999
Q ss_pred CCCCCcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 79 VAMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 79 ~~~~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
+++|.+|..|++++++++| |++||........+++.||+.++.|.+
T Consensus 181 ~~~p~~r~~~~~~~~~~~i---------yv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 181 APMQTARSLFGATVHDGRI---------IVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp CCCSSCCBSCEEEEETTEE---------EEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred CCCCCchhceEEEEECCEE---------EEEeccCCCCccceEEEEECCCCeEEE
Confidence 9999999999999999999 555554444567789999999999963
No 7
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.93 E-value=3.1e-25 Score=153.46 Aligned_cols=122 Identities=36% Similarity=0.575 Sum_probs=108.9
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMT 82 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 82 (133)
+++.||.++....+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.....+++++||+.+++|++++++|
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 46778888777899999999999999999999999999999999999999999887666889999999999999999999
Q ss_pred CcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 83 SRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 83 ~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
.+|..+++++++++| |++||........+++.||+.++.|.+
T Consensus 242 ~~r~~~~~~~~~~~i---------~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 242 TPRCYVGATVLRGRL---------YAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp SCCBSCEEEEETTEE---------EEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred CcccceeEEEECCEE---------EEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 999999999999999 556665555566789999999999963
No 8
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.93 E-value=1.3e-25 Score=156.63 Aligned_cols=131 Identities=21% Similarity=0.259 Sum_probs=107.0
Q ss_pred ceeccccc-CCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 3 EDFNHGYR-ELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 3 ~~~~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
+++.||.. ....++++++||+.+++|..+++||.+|..|++++++++||++||.+.....+.+++||+.+++|++++++
T Consensus 161 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 240 (318)
T 2woz_A 161 IYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF 240 (318)
T ss_dssp EEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCC
T ss_pred EEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCC
Confidence 35677774 45568999999999999999999999999999999999999999987666678999999999999999999
Q ss_pred CCcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 82 TSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 82 ~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
|.+|..|++++++++||++||........+........+++.||+.+++|.+
T Consensus 241 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 241 PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp SSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred CCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 9999999999999999776665431111111112345689999999999974
No 9
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.93 E-value=1.4e-25 Score=156.00 Aligned_cols=122 Identities=28% Similarity=0.478 Sum_probs=106.9
Q ss_pred ceecccc----cCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeC
Q psy14436 3 EDFNHGY----RELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 3 ~~~~GG~----~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
.++.||. .+...++++++||+.+++|+++++||.+|..|++++++++||++||.......+.+++||+.+++|+++
T Consensus 73 lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 152 (308)
T 1zgk_A 73 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV 152 (308)
T ss_dssp EEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEEC
T ss_pred EEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeEC
Confidence 4567887 556678999999999999999999999999999999999999999987666678999999999999999
Q ss_pred CCCCCcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 79 VAMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 79 ~~~~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
+++|.+|..+++++++++| |++||........+++.||+.++.|.+
T Consensus 153 ~~~p~~r~~~~~~~~~~~i---------yv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 153 APMLTRRIGVGVAVLNRLL---------YAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp CCCSSCCBSCEEEEETTEE---------EEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCCCccccceEEEEECCEE---------EEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 9999999999999999999 555554444446789999999999963
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.93 E-value=2.7e-25 Score=153.75 Aligned_cols=122 Identities=27% Similarity=0.437 Sum_probs=108.7
Q ss_pred ceecccccCCeeecEEEEEeCCCCc---eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNR---WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
.+++||..+....+++++||+.+++ |+.++++|.+|..|+++.++++||++||.......+++++||+.+++|++++
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 144 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG 144 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECC
Confidence 4667888877789999999999999 9999999999999999999999999999987666889999999999999999
Q ss_pred CCCCcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 80 AMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 80 ~~~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
++|.+|..|++++++++| |++||........+++.||+.++.|.+
T Consensus 145 ~~p~~r~~~~~~~~~~~i---------yv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 145 DMQTAREGAGLVVASGVI---------YCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp ECSSCCBSCEEEEETTEE---------EEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCCCCcccceEEEECCEE---------EEECCCCCCcccceEEEEeCCCCcEEe
Confidence 999999999999999999 555555555567789999999999963
No 11
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.93 E-value=2.5e-25 Score=155.25 Aligned_cols=122 Identities=20% Similarity=0.289 Sum_probs=105.6
Q ss_pred ceeccccc--CCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCC-CCCccCeEEEEeCCCCceeeCC
Q psy14436 3 EDFNHGYR--ELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRD-DSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 3 ~~~~GG~~--~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
++++||.. +...++++++||+.+++|++++++|.+|..|++++.+++||++||.. .....+++++||+.+++|++++
T Consensus 112 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~ 191 (318)
T 2woz_A 112 IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA 191 (318)
T ss_dssp EEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC
T ss_pred EEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC
Confidence 45678875 46678999999999999999999999999999999999999999974 3445789999999999999999
Q ss_pred CCCCcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 80 AMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 80 ~~~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
++|.+|..|++++++++| |++||........+++.||+.++.|.+
T Consensus 192 ~~p~~r~~~~~~~~~~~i---------yv~GG~~~~~~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 192 PMKTPRSMFGVAIHKGKI---------VIAGGVTEDGLSASVEAFDLKTNKWEV 236 (318)
T ss_dssp CCSSCCBSCEEEEETTEE---------EEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred CCCCCcccceEEEECCEE---------EEEcCcCCCCccceEEEEECCCCeEEE
Confidence 999999999999999999 555554444556789999999999963
No 12
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=154.04 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=105.8
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCC-CCCccCeEEEEeCCCCceeeCCCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRD-DSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
.++.||.. ...++++++||+.+++|.+++++|.+|..|++++++++||++||.+ .....+++++||+.+++|++++++
T Consensus 58 lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~ 136 (306)
T 3ii7_A 58 VYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM 136 (306)
T ss_dssp EEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC
T ss_pred EEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC
Confidence 35677777 6678999999999999999999999999999999999999999987 555688999999999999999999
Q ss_pred CCcccceeeEEeCCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 82 TSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 82 ~~~r~~~~~~~~~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
|.+|..|++++++++||++||... .........+++.||+.++.|.+
T Consensus 137 p~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~~~~~yd~~~~~W~~ 183 (306)
T 3ii7_A 137 LTQRCSHGMVEANGLIYVCGGSLG-----NNVSGRVLNSCEVYDPATETWTE 183 (306)
T ss_dssp SSCCBSCEEEEETTEEEEECCEES-----CTTTCEECCCEEEEETTTTEEEE
T ss_pred cCCcceeEEEEECCEEEEECCCCC-----CCCcccccceEEEeCCCCCeEEE
Confidence 999999999999999966655321 11111236789999999999963
No 13
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.90 E-value=3.3e-23 Score=146.31 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=86.3
Q ss_pred ceecccc-c----CCeeecEEEEEeCCCCceeecCCCc-ccccceEEEEECCEEEEEecCCCC-----------------
Q psy14436 3 EDFNHGY-R----ELQLQVSVERFDPKLNRWTAMAPMS-TRRKHLGCAVFNNVIYAVGGRDDS----------------- 59 (133)
Q Consensus 3 ~~~~GG~-~----~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~----------------- 59 (133)
++++||. . ....++++++||+.+++|+++++|+ .+|..|++++.+++||++||.+..
T Consensus 68 lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 147 (357)
T 2uvk_A 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDST 147 (357)
T ss_dssp EEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHH
T ss_pred EEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCccc
Confidence 3566887 3 3467899999999999999999888 889999999999999999998632
Q ss_pred -----------------CccCeEEEEeCCCCceeeCCCCCCcccc-eeeEEeCCeeeeecCc
Q psy14436 60 -----------------MELSSAEKYNPHTNTWLPIVAMTSRRSG-LGPGSLQLTLPTLTSV 103 (133)
Q Consensus 60 -----------------~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~~~iy~~gG~ 103 (133)
...+.+++||+.+++|+.++++|.+|.. +++++++++||++||.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~ 209 (357)
T 2uvk_A 148 AIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGE 209 (357)
T ss_dssp HHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCE
T ss_pred chhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeee
Confidence 1357999999999999999999987554 9999999999888884
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.89 E-value=1e-22 Score=143.85 Aligned_cols=126 Identities=17% Similarity=0.235 Sum_probs=97.5
Q ss_pred eecccccCCeeecEEEEEeCC--CCceeecCCCc-ccccceEEEEECCEEEEEecC-C----CCCccCeEEEEeCCCCce
Q psy14436 4 DFNHGYRELQLQVSVERFDPK--LNRWTAMAPMS-TRRKHLGCAVFNNVIYAVGGR-D----DSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 4 ~~~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~-~----~~~~~~~~~~yd~~~~~W 75 (133)
+++||..+ +++++||+. +++|.++++|| .+|..|++++++++||++||. . .....+++++||+.+++|
T Consensus 23 yv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 23 YIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp EEECGGGT----TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred EEEeCcCC----CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 46677654 479999998 49999999999 899999999999999999998 2 234578999999999999
Q ss_pred eeCCCCC-CcccceeeEEeCCeeeeecCceEEE-------------------------EeCCCCccceeeeeeeecCCCC
Q psy14436 76 LPIVAMT-SRRSGLGPGSLQLTLPTLTSVKFTY-------------------------IIPGDPAERLKFTREEKEPPHM 129 (133)
Q Consensus 76 ~~~~~~~-~~r~~~~~~~~~~~iy~~gG~~~~~-------------------------v~gg~~~~~~~~~~~~~~~~~~ 129 (133)
+++++|+ .+|..|++++++++||++||..... ...+........+++.||+.++
T Consensus 99 ~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 178 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ 178 (357)
T ss_dssp EECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTT
T ss_pred EECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCC
Confidence 9999998 9999999999999995555532100 0000000124568999999999
Q ss_pred CccC
Q psy14436 130 YWYK 133 (133)
Q Consensus 130 ~W~~ 133 (133)
.|.+
T Consensus 179 ~W~~ 182 (357)
T 2uvk_A 179 QWSY 182 (357)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 9963
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.89 E-value=8.5e-23 Score=155.67 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=102.4
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecC-C-----CcccccceEEEEE--CCEEEEEecCCCCC-ccCeEEEEeCCCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMA-P-----MSTRRKHLGCAVF--NNVIYAVGGRDDSM-ELSSAEKYNPHTN 73 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~-~-----~p~~r~~~~~~~~--~~~iyv~GG~~~~~-~~~~~~~yd~~~~ 73 (133)
++++||..+ ..++++++||+.+++|..++ + ||.+|..|+++++ +++||++||.+... ..+++++||+.++
T Consensus 400 iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 400 VFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp EEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 467788877 77899999999999999987 5 7899999999999 99999999987543 6789999999999
Q ss_pred ceeeCCCCCCcccceeeEEe-CCeeeeecCceEEEEeCCCCccceeeeeeeecCCCCCccC
Q psy14436 74 TWLPIVAMTSRRSGLGPGSL-QLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYWYK 133 (133)
Q Consensus 74 ~W~~~~~~~~~r~~~~~~~~-~~~iy~~gG~~~~~v~gg~~~~~~~~~~~~~~~~~~~W~~ 133 (133)
+|+++++||.+|..|+++++ +++| ||+||..... +++.||+.++.|.+
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~i---------yv~GG~~~~~---~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNV---------LILGGVTEGP---AMLLYNVTEEIFKD 527 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCE---------EEECCBCSSC---SEEEEETTTTEEEE
T ss_pred cEEECCCCCCCcccceEEEEcCCEE---------EEECCCCCCC---CEEEEECCCCceEE
Confidence 99999999999999999997 9999 5555544333 78999999999963
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.86 E-value=1.6e-21 Score=148.72 Aligned_cols=117 Identities=12% Similarity=0.041 Sum_probs=99.0
Q ss_pred ceecccccCC-eeecEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 3 EDFNHGYREL-QLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 3 ~~~~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
.+++||..+. ..++++++||+.+++|+.+++||.+|..|+++++ +++||++||.+... .+++||+.+++|+.+++
T Consensus 454 lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 454 LLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp EEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCC
T ss_pred EEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccC
Confidence 4677888754 3789999999999999999999999999999997 99999999987554 89999999999999986
Q ss_pred ---CCCcccceeeEEeC---CeeeeecCceEEEEeCCCC--ccceeeeeeeecCCCCCc
Q psy14436 81 ---MTSRRSGLGPGSLQ---LTLPTLTSVKFTYIIPGDP--AERLKFTREEKEPPHMYW 131 (133)
Q Consensus 81 ---~~~~r~~~~~~~~~---~~iy~~gG~~~~~v~gg~~--~~~~~~~~~~~~~~~~~W 131 (133)
+|.+|..|++++++ ++| |++||.. +.....+++.||+.++.|
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~i---------yv~GG~~~~~~~~~~~v~~yd~~~~~w 580 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQG---------IILGGGFMDQTTVSDKAIIFKYDAENA 580 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEE---------EEECCBCTTSSCBCCEEEEEEECTTCS
T ss_pred CCCCCCcccceeEEEEeCCCCEE---------EEECCcCCCCCeeeCcEEEEEccCCcc
Confidence 89999999988877 889 5555532 234567899999999984
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.81 E-value=3.3e-20 Score=140.45 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=94.1
Q ss_pred ceecccccCC------eeecEEEEEeCCCCceeecCCCcccccceE--EEE-ECCEEEEEecCCCCCccCeEEEEeCCCC
Q psy14436 3 EDFNHGYREL------QLQVSVERFDPKLNRWTAMAPMSTRRKHLG--CAV-FNNVIYAVGGRDDSMELSSAEKYNPHTN 73 (133)
Q Consensus 3 ~~~~GG~~~~------~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~--~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 73 (133)
.++.||.... ...+++++||+.+++|.+++.||.+|..++ +++ .+++||++||.... ++++||+.++
T Consensus 200 l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~ 275 (656)
T 1k3i_A 200 VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSD 275 (656)
T ss_dssp EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGT
T ss_pred EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCC
Confidence 4566776432 235689999999999999999988886654 333 47999999997542 7999999999
Q ss_pred ceeeCCCCCCcccceeeEEe-CCeeeeecCceEEEEeCC-CCccceeeeeeeecCCCCCcc
Q psy14436 74 TWLPIVAMTSRRSGLGPGSL-QLTLPTLTSVKFTYIIPG-DPAERLKFTREEKEPPHMYWY 132 (133)
Q Consensus 74 ~W~~~~~~~~~r~~~~~~~~-~~~iy~~gG~~~~~v~gg-~~~~~~~~~~~~~~~~~~~W~ 132 (133)
+|+++++|+.+|..|+++++ +++| |++|| ........+++.||+.++.|.
T Consensus 276 ~W~~~~~~~~~R~~~s~~~~~dg~i---------yv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 276 SWIPGPDMQVARGYQSSATMSDGRV---------FTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEEECCCCSSCCSSCEEEECTTSCE---------EEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ceeECCCCCccccccceEEecCCeE---------EEEeCcccCCcccccceEeCCCCCcce
Confidence 99999999999999999999 9999 55555 334445678999999999996
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.79 E-value=2.4e-19 Score=135.72 Aligned_cols=95 Identities=16% Similarity=0.252 Sum_probs=74.4
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecC-CCCCccCeEEEEeCCCCceeeC--
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGR-DDSMELSSAEKYNPHTNTWLPI-- 78 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~-- 78 (133)
++++||.... ++++||+.+++|.++++||.+|..|+++++ +++||++||. ++....+.+++||+.+++|+.+
T Consensus 256 lyv~GG~~~~----~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~ 331 (656)
T 1k3i_A 256 IVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN 331 (656)
T ss_dssp EEEECSSSTT----CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETT
T ss_pred EEEeCCCCCC----ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCC
Confidence 4566775543 799999999999999999999999999999 9999999994 4555678999999999999997
Q ss_pred ---CCCCCcccceeeEEeCCeeeeecC
Q psy14436 79 ---VAMTSRRSGLGPGSLQLTLPTLTS 102 (133)
Q Consensus 79 ---~~~~~~r~~~~~~~~~~~iy~~gG 102 (133)
.+|+..|.. +++..++++|++||
T Consensus 332 ~~~~p~~~~~~~-~~~~~~~~iyv~Gg 357 (656)
T 1k3i_A 332 AKVNPMLTADKQ-GLYRSDNHAWLFGW 357 (656)
T ss_dssp SCSGGGCCCCTT-GGGTTTCSCCEEEC
T ss_pred cccccccccccc-ceeecCCceEEEEC
Confidence 455555432 44445666666653
No 19
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.17 E-value=0.0066 Score=40.80 Aligned_cols=90 Identities=14% Similarity=0.021 Sum_probs=64.5
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQ 94 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 94 (133)
.+.+..+|+.+++-.+.-++|....+.+++..+++||+.... .+.+.+||+.+.+-. ...+.+..+.+++.-+
T Consensus 42 ~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~-----~~~v~v~D~~tl~~~--~ti~~~~~Gwglt~dg 114 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR-----NHEGFVYDLATLTPR--ARFRYPGEGWALTSDD 114 (243)
T ss_dssp SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETTTTEEE--EEEECSSCCCEEEECS
T ss_pred CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee-----CCEEEEEECCcCcEE--EEEeCCCCceEEeeCC
Confidence 357889999999886655566555667788889999998643 378999999887532 2233333456676667
Q ss_pred CeeeeecCceEEEEeCC
Q psy14436 95 LTLPTLTSVKFTYIIPG 111 (133)
Q Consensus 95 ~~iy~~gG~~~~~v~gg 111 (133)
+++|+-.|+..++++.-
T Consensus 115 ~~L~vSdgs~~l~~iDp 131 (243)
T 3mbr_X 115 SHLYMSDGTAVIRKLDP 131 (243)
T ss_dssp SCEEEECSSSEEEEECT
T ss_pred CEEEEECCCCeEEEEeC
Confidence 78988888776666653
No 20
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.81 E-value=0.015 Score=39.53 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=60.9
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQ 94 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 94 (133)
.+.+.++|++|++-.+--+++....+.+++..+++||+.... .+.+.+||+.+.+-. ...+.+-.+.+++.-+
T Consensus 64 ~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~-----~~~v~v~D~~t~~~~--~ti~~~~eG~glt~dg 136 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK-----NGLGFVWNIRNLRQV--RSFNYDGEGWGLTHND 136 (262)
T ss_dssp EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETTTCCEE--EEEECSSCCCCEEECS
T ss_pred CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee-----CCEEEEEECccCcEE--EEEECCCCceEEecCC
Confidence 357889999999876654555444556678889999998553 378999999887643 2222233445666666
Q ss_pred CeeeeecCceEEEEeC
Q psy14436 95 LTLPTLTSVKFTYIIP 110 (133)
Q Consensus 95 ~~iy~~gG~~~~~v~g 110 (133)
+++|+..|+..+.++.
T Consensus 137 ~~L~~SdGs~~i~~iD 152 (262)
T 3nol_A 137 QYLIMSDGTPVLRFLD 152 (262)
T ss_dssp SCEEECCSSSEEEEEC
T ss_pred CEEEEECCCCeEEEEc
Confidence 7888887776555554
No 21
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.41 E-value=0.027 Score=38.38 Aligned_cols=86 Identities=8% Similarity=-0.111 Sum_probs=58.7
Q ss_pred EEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeCCee
Q psy14436 18 VERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTL 97 (133)
Q Consensus 18 ~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i 97 (133)
+..+|+++++-.+-- ++....+.+++..+++||+.... .+.+.+||+.+.+-. ...+.+-.+.+++.-++++
T Consensus 77 v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~-----~~~v~V~D~~Tl~~~--~ti~~~~eGwGLt~Dg~~L 148 (268)
T 3nok_A 77 LRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT-----EGLLFTWSGMPPQRE--RTTRYSGEGWGLCYWNGKL 148 (268)
T ss_dssp EEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS-----SCEEEEEETTTTEEE--EEEECSSCCCCEEEETTEE
T ss_pred EEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc-----CCEEEEEECCcCcEE--EEEeCCCceeEEecCCCEE
Confidence 888999998875543 44444445677788999998553 378999999987543 2222233445677777889
Q ss_pred eeecCceEEEEeCC
Q psy14436 98 PTLTSVKFTYIIPG 111 (133)
Q Consensus 98 y~~gG~~~~~v~gg 111 (133)
|+..|+..++++.-
T Consensus 149 ~vSdGs~~l~~iDp 162 (268)
T 3nok_A 149 VRSDGGTMLTFHEP 162 (268)
T ss_dssp EEECSSSEEEEECT
T ss_pred EEECCCCEEEEEcC
Confidence 88888776666653
No 22
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.15 E-value=0.09 Score=35.71 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=57.4
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCc-ccceeeEEe
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSR-RSGLGPGSL 93 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~ 93 (133)
.+.+..+|+.+++-...-+++......+++..++.||+..- ..+.+.+||+.+.+= +...+.+ ..+.+++.-
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~-----~~~~v~viD~~t~~v--~~~i~~g~~~g~glt~D 115 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW-----LKNIGFIYDRRTLSN--IKNFTHQMKDGWGLATD 115 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET-----TCSEEEEEETTTTEE--EEEEECCSSSCCEEEEC
T ss_pred CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe-----cCCEEEEEECCCCcE--EEEEECCCCCeEEEEEC
Confidence 36799999999887554334433344567778889999854 246899999987642 2222222 223444444
Q ss_pred CCeeeeecCceEEEEeCC
Q psy14436 94 QLTLPTLTSVKFTYIIPG 111 (133)
Q Consensus 94 ~~~iy~~gG~~~~~v~gg 111 (133)
++++|+..|+..++++.-
T Consensus 116 g~~l~vs~gs~~l~viD~ 133 (266)
T 2iwa_A 116 GKILYGSDGTSILYEIDP 133 (266)
T ss_dssp SSSEEEECSSSEEEEECT
T ss_pred CCEEEEECCCCeEEEEEC
Confidence 567888777766666653
No 23
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.20 E-value=0.23 Score=33.33 Aligned_cols=61 Identities=21% Similarity=0.141 Sum_probs=45.9
Q ss_pred ceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeCCeeeeecCc
Q psy14436 40 HLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSV 103 (133)
Q Consensus 40 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~ 103 (133)
-++....++.||.-.|..+ .+.+.++|+.+++=..-.+++......+++..++++|++...
T Consensus 23 tqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp EEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred cccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee
Confidence 3577788899999888643 368999999999866555666555566778889999887744
No 24
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=94.17 E-value=0.6 Score=32.00 Aligned_cols=78 Identities=6% Similarity=-0.097 Sum_probs=45.8
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCC-cccceeeEE
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTS-RRSGLGPGS 92 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~ 92 (133)
+.++++|+.+.+..+.-..+.......++.. ++.||+..+ .+.++|+.+.+.......+. ...-.++++
T Consensus 203 ~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~v 274 (328)
T 3dsm_A 203 PSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--------DIWRMPVEADRVPVRPFLEFRDTKYYGLTV 274 (328)
T ss_dssp CEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--------SEEEEETTCSSCCSSCSBCCCSSCEEEEEE
T ss_pred ceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--------EEEEEECCCCceeeeeeecCCCCceEEEEE
Confidence 6899999999876543233333333445554 468888633 68899999887533222221 122233434
Q ss_pred --eCCeeeeec
Q psy14436 93 --LQLTLPTLT 101 (133)
Q Consensus 93 --~~~~iy~~g 101 (133)
.++++|+..
T Consensus 275 dp~~g~lyva~ 285 (328)
T 3dsm_A 275 NPNNGEVYVAD 285 (328)
T ss_dssp CTTTCCEEEEE
T ss_pred cCCCCeEEEEc
Confidence 257897775
No 25
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=94.14 E-value=0.35 Score=32.78 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=47.8
Q ss_pred eecCCCcccccc--eEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeCCeeeeecCc
Q psy14436 29 TAMAPMSTRRKH--LGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSV 103 (133)
Q Consensus 29 ~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~ 103 (133)
+.+...|..... .+....++.||+..|..+ .+.+.++|+.+++=..-.+++......+++..++++|+....
T Consensus 32 ~vv~~~phd~~~ftqGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred EEEEEecCCCCcccceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee
Confidence 334444544433 566667899999888543 368899999999765444555444445677788999888743
No 26
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=93.39 E-value=1.2 Score=30.37 Aligned_cols=79 Identities=10% Similarity=-0.056 Sum_probs=50.9
Q ss_pred ecEEEEEeCCCCceeecC-----CCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCce-eeCCCCCCcccce
Q psy14436 15 QVSVERFDPKLNRWTAMA-----PMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW-LPIVAMTSRRSGL 88 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~-----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~ 88 (133)
-+++-.+|+.+++..+-- ..+.......++..++++|+.... ...+.++|+.+.+- .+++....++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~~~~p~--- 87 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITGFTSPR--- 87 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEECCSSEE---
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCCCCCCc---
Confidence 567889999998875421 112233345666778999998652 36799999998875 3444333332
Q ss_pred eeEE-eCCeeeeec
Q psy14436 89 GPGS-LQLTLPTLT 101 (133)
Q Consensus 89 ~~~~-~~~~iy~~g 101 (133)
.++. -++++|+..
T Consensus 88 ~i~~~~~g~lyv~~ 101 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQ 101 (328)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEeCCCeEEEEE
Confidence 3333 577887766
No 27
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=93.02 E-value=1.5 Score=30.31 Aligned_cols=76 Identities=12% Similarity=-0.016 Sum_probs=43.4
Q ss_pred cEEEEEeCCCCc--eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCcccceeeE
Q psy14436 16 VSVERFDPKLNR--WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSRRSGLGPG 91 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~ 91 (133)
..++++|+.+++ |..-. ++ .+.....+..++.||+... ...+.++|+.+++ |+.- ++........+
T Consensus 287 g~l~~~d~~tG~~~w~~~~-~~-~~~~~~~~~~~~~l~v~~~------~g~l~~~d~~tG~~~~~~~--~~~~~~~~~~~ 356 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSD-LL-HRLLTSPVLYNGNLVVGDS------EGYLHWINVEDGRFVAQQK--VDSSGFQTEPV 356 (376)
T ss_dssp CCEEEEETTTCCEEEEECT-TT-TSCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEE--CCTTCBCSCCE
T ss_pred CeEEEEECCCCcEEEeecc-cC-CCcccCCEEECCEEEEEeC------CCeEEEEECCCCcEEEEEe--cCCCcceeCCE
Confidence 367889988765 65421 11 1222334556788887532 2478999998886 5432 21122233455
Q ss_pred EeCCeeeeec
Q psy14436 92 SLQLTLPTLT 101 (133)
Q Consensus 92 ~~~~~iy~~g 101 (133)
..++++|+.+
T Consensus 357 ~~~~~l~v~~ 366 (376)
T 3q7m_A 357 AADGKLLIQA 366 (376)
T ss_dssp EETTEEEEEB
T ss_pred EECCEEEEEe
Confidence 6688885543
No 28
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=88.52 E-value=2.3 Score=28.75 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=39.5
Q ss_pred eEEEEEC-CEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeCCeeeeecCc
Q psy14436 41 LGCAVFN-NVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSV 103 (133)
Q Consensus 41 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~ 103 (133)
++++... +.||+..|..+ .+.+.++|+.+++=..--+++......+.+..++++|+....
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~ 84 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL 84 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec
Confidence 5676665 79999876422 368999999999754433344333344566677888777643
No 29
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=87.78 E-value=1.8 Score=29.33 Aligned_cols=74 Identities=11% Similarity=0.097 Sum_probs=42.0
Q ss_pred eecccccC-CeeecEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 4 DFNHGYRE-LQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 4 ~~~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
+|+|.... ....-.++.+|..++++..+...........++.. +++||+.+... ....+..||+.+++++.+..
T Consensus 5 ~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 5 ILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEE
T ss_pred EEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeee
Confidence 55564432 22234578888888888765432222222223332 56777765421 13578899988887766543
No 30
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=87.64 E-value=5.2 Score=27.50 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=47.9
Q ss_pred cEEEEEeCCCCc--eeecCCCc-------ccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCc
Q psy14436 16 VSVERFDPKLNR--WTAMAPMS-------TRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSR 84 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p-------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~ 84 (133)
..+++||..+++ |+.-.... ........+..++.||+... ...+.++|+.+++ |+.-.+ ..
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~--~~ 134 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE------KAQVYALNTSDGTVAWQTKVA--GE 134 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET------TSEEEEEETTTCCEEEEEECS--SC
T ss_pred CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC------CCEEEEEECCCCCEEEEEeCC--Cc
Confidence 378999998765 65432111 11222344566888887533 2579999998775 754322 11
Q ss_pred ccceeeEEeCCeeeeecCceEEEEeC
Q psy14436 85 RSGLGPGSLQLTLPTLTSVKFTYIIP 110 (133)
Q Consensus 85 r~~~~~~~~~~~iy~~gG~~~~~v~g 110 (133)
.....+..++.+|+......++.+.
T Consensus 135 -~~~~p~~~~~~v~v~~~~g~l~~~d 159 (376)
T 3q7m_A 135 -ALSRPVVSDGLVLIHTSNGQLQALN 159 (376)
T ss_dssp -CCSCCEEETTEEEEECTTSEEEEEE
T ss_pred -eEcCCEEECCEEEEEcCCCeEEEEE
Confidence 1223445577776655444344443
No 31
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=87.42 E-value=2.4 Score=28.68 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=33.7
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--C--CEEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--N--NVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
.+..||.....+..+..+..+........+ + +.+++.|+.+ ..+..||+.+++|..+..+
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~ 97 (379)
T 3jrp_A 34 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRWSQIAVH 97 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEEETTEEEEEEEE
T ss_pred cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-----CEEEEEEcCCCceeEeeee
Confidence 356677765555554433323222233333 2 5666677754 4688888888877655433
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=87.37 E-value=3.8 Score=27.67 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=35.0
Q ss_pred cEEEEEeCCCCceeecCCCcccccc-eEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKH-LGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
..+..||..+.++..+..+..+... .+++.. ++.+++.|+.+ ..+..||+.+.++...
T Consensus 30 ~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 30 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWKPT 89 (372)
T ss_dssp SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEEECCCCeeeee
Confidence 4678889888876555544333322 223333 45666667643 4578888888876544
No 33
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=86.33 E-value=5.4 Score=27.91 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=44.6
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEe
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL 93 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 93 (133)
++|+.||..+++..++-.+..+.....++.+ ++.+++.|+.+ ..+..+|+.+.+-... +........+...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~~~~~--~~~h~~~v~~~s~ 197 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRN--MTSHSARVGSLSW 197 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCcEEEE--EeCCCCceEEEee
Confidence 5789999999887665433333222233333 46777777754 4688889887753222 2222222334455
Q ss_pred CCeeeeec
Q psy14436 94 QLTLPTLT 101 (133)
Q Consensus 94 ~~~iy~~g 101 (133)
++++++.|
T Consensus 198 ~~~~l~sg 205 (420)
T 4gga_A 198 NSYILSSG 205 (420)
T ss_dssp ETTEEEEE
T ss_pred CCCEEEEE
Confidence 66664444
No 34
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=85.39 E-value=4.8 Score=27.34 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=39.1
Q ss_pred eEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEeCCeeeeecCc
Q psy14436 41 LGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSV 103 (133)
Q Consensus 41 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~ 103 (133)
.+....++.||+..|.. ..+.++|+.+++=..-. ++......+++..+++||+....
T Consensus 58 qGL~~~~~~Ly~stG~~-----g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~ 114 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQ-----GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT 114 (268)
T ss_dssp EEEEEETTEEEEEETTT-----TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS
T ss_pred ceEEEECCEEEEEcCCC-----CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc
Confidence 46666789999988854 23899999998753322 44333345577788899887643
No 35
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=84.64 E-value=3.3 Score=31.79 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=35.7
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--C--CEEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--N--NVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
.+..||..++++..+..+..+......+.+ + +.+++.|+.+ ..+..||+.+++|..+..+
T Consensus 32 ~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~ 95 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRWSQIAVH 95 (753)
T ss_dssp EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-----SCEEEEEEETTEEEEEEEE
T ss_pred cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-----CeEEEEECCCCcccccccc
Confidence 566777776666655444333333333333 2 5667777754 4588888888877655433
No 36
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=82.94 E-value=8.8 Score=26.02 Aligned_cols=76 Identities=8% Similarity=0.029 Sum_probs=38.6
Q ss_pred ceecccccCC-eeecEEEEEeCCCCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeE--EEEeCCCCceee
Q psy14436 3 EDFNHGYREL-QLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSA--EKYNPHTNTWLP 77 (133)
Q Consensus 3 ~~~~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~--~~yd~~~~~W~~ 77 (133)
.+|+|.+... ...-.++.+|+.+.+...+... .......++.. ++ .||+....... ...+ +.+|..+++.+.
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~--~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKD--QAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSST--TCEEEEEEEETTTTEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCC--CCcEEEEEEeCCCCcEEE
Confidence 3566766432 2233466778888888776543 22222223332 34 57766543211 2344 445666577766
Q ss_pred CCCC
Q psy14436 78 IVAM 81 (133)
Q Consensus 78 ~~~~ 81 (133)
+...
T Consensus 92 ~~~~ 95 (361)
T 3scy_A 92 LNTQ 95 (361)
T ss_dssp EEEE
T ss_pred eeEe
Confidence 6543
No 37
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=82.89 E-value=11 Score=28.22 Aligned_cols=75 Identities=12% Similarity=0.031 Sum_probs=42.4
Q ss_pred ecEEEEEeCCCCc--eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCcccc-ee
Q psy14436 15 QVSVERFDPKLNR--WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSRRSG-LG 89 (133)
Q Consensus 15 ~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~-~~ 89 (133)
...+.++|+.+.+ |+.-.. .+......+..++.||+ |.. ...+.++|..+.+ |+.- ++..... ..
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~v~~-g~~-----dg~l~a~D~~tG~~lw~~~--~~~~~~~~p~ 512 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWY-ATL-----DGYLKALDNKDGKELWNFK--MPSGGIGSPM 512 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEE-ECT-----TSEEEEEETTTCCEEEEEE--CSSCCCSCCE
T ss_pred CCeEEEEECCCCCEEEEecCC--CCccceeEEECCCEEEE-EcC-----CCeEEEEECCCCCEEEEEe--CCCCcEeeeE
Confidence 3579999998875 765322 12222223344678877 432 2578999998875 6542 2222221 22
Q ss_pred eEEeCCeeee
Q psy14436 90 PGSLQLTLPT 99 (133)
Q Consensus 90 ~~~~~~~iy~ 99 (133)
....++++|+
T Consensus 513 ~~~~~G~~yv 522 (571)
T 2ad6_A 513 TYSFKGKQYI 522 (571)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEE
Confidence 2236888866
No 38
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=82.71 E-value=10 Score=28.39 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=44.5
Q ss_pred ecEEEEEeCCCCc--eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCcccc-ee
Q psy14436 15 QVSVERFDPKLNR--WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSRRSG-LG 89 (133)
Q Consensus 15 ~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~-~~ 89 (133)
...+.++|+.|++ |+.-.. .+...-.++..++.+|+ |.. ...+.+||..+.+ |+.- ++..... ..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~-g~~-----dg~l~A~D~~tG~~lW~~~--~~~g~~a~P~ 534 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFT-GTG-----DGYFKAFDAKSGKELWKFQ--TGSGIVSPPI 534 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEE-ECT-----TSEEEEEETTTCCEEEEEE--CSSCCCSCCE
T ss_pred cceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEE-ECC-----CCcEEEEECCCCCEEEEec--CCCCcccCce
Confidence 3578899998876 765322 23333334445677776 432 2578999998886 7542 2332222 22
Q ss_pred eEEeCCeeee
Q psy14436 90 PGSLQLTLPT 99 (133)
Q Consensus 90 ~~~~~~~iy~ 99 (133)
....+++.||
T Consensus 535 ~y~~~G~qYv 544 (582)
T 1flg_A 535 TWEQDGEQYL 544 (582)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEE
Confidence 2237888876
No 39
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=82.31 E-value=14 Score=27.96 Aligned_cols=75 Identities=11% Similarity=0.048 Sum_probs=44.5
Q ss_pred ecEEEEEeCCCCc--eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCccc-cee
Q psy14436 15 QVSVERFDPKLNR--WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSRRS-GLG 89 (133)
Q Consensus 15 ~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~-~~~ 89 (133)
...+.++|+.|++ |+.-... +...-.++..++.+|+ |.. ...+.+||..+.+ |+. .++.... ...
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~-gt~-----dg~l~A~D~~tG~~lW~~--~l~~g~~~~P~ 521 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFY-GTL-----DGYLKARDSDTGDLLWKF--KIPSGAIGYPM 521 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEE-ECT-----TSEEEEEETTTCCEEEEE--ECSSCCCSCCE
T ss_pred cCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEE-ECC-----CCeEEEEECCCCCEEEEe--eCCCCcEeccE
Confidence 3578999999875 8663222 2222224445677777 432 2578999999886 765 2333222 222
Q ss_pred eEEeCCeeee
Q psy14436 90 PGSLQLTLPT 99 (133)
Q Consensus 90 ~~~~~~~iy~ 99 (133)
....+|+.||
T Consensus 522 ~y~~~G~qyv 531 (599)
T 1w6s_A 522 TYTHKGTQYV 531 (599)
T ss_dssp EEEETTEEEE
T ss_pred EEEeCCEEEE
Confidence 3347888876
No 40
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=82.24 E-value=2.4 Score=28.96 Aligned_cols=56 Identities=20% Similarity=0.379 Sum_probs=29.5
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCc-eee
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNT-WLP 77 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~ 77 (133)
.+..||..++.|..+..+..+......+.+ ++.+++.|+.+ ..+..||+.+.. |..
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 34 QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC------CCCC
T ss_pred EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEEEcCCCCceee
Confidence 456788888877776655544333333333 45666777754 457788887776 443
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=81.45 E-value=9.2 Score=25.20 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=29.6
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
..+..||..+.+......+..+........+ ++..++.|+.+ ..+..||+.+.+.
T Consensus 119 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~ 175 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQTL 175 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEE
T ss_pred CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCce
Confidence 4678899888775443322222222222222 45566666643 4578888887654
No 42
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=78.40 E-value=13 Score=24.98 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=34.6
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEE--C--CEEEEEecCCCCCccCeEEEEeCCCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--N--NVIYAVGGRDDSMELSSAEKYNPHTN 73 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~ 73 (133)
.|++|+.++ .+..||..+++|..+............+.+ + +.+++.|+.+ ..+..||+.+.
T Consensus 71 ~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~ 135 (379)
T 3jrp_A 71 ILASCSYDG-----KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKEN 135 (379)
T ss_dssp EEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCTT
T ss_pred EEEEeccCC-----EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecCCC
Confidence 344555443 467788888887665543333322333333 2 4566666643 46777887766
No 43
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=77.93 E-value=15 Score=25.72 Aligned_cols=52 Identities=4% Similarity=-0.030 Sum_probs=27.8
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+..||..+.+-...-.. ....-.+++.. ++..++.|+.+ ..+..||+.+.+
T Consensus 291 ~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~ 343 (464)
T 3v7d_B 291 TLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGE 343 (464)
T ss_dssp CEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTE
T ss_pred eEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Confidence 477888877654332111 11111223333 45566666643 458888988765
No 44
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=77.61 E-value=11 Score=26.00 Aligned_cols=55 Identities=13% Similarity=0.101 Sum_probs=32.7
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
..+..||..+++............-.+++.. ++.+++.|+.+ ..+..||+.+.+-
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~ 168 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQTK 168 (401)
T ss_dssp TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCE
T ss_pred CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC-----CeEEEEECcCCeE
Confidence 4688999998887655433222222223322 45666667643 4688888887754
No 45
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=77.23 E-value=10 Score=26.60 Aligned_cols=51 Identities=6% Similarity=0.336 Sum_probs=29.1
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+..||..+.+-... +........+...++.+++.|+.+ ..+..||+.+.+
T Consensus 277 ~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~ 327 (435)
T 1p22_A 277 TIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGA 327 (435)
T ss_dssp EEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEETT-----SCEEEEETTTCC
T ss_pred eEEEEECCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeCC-----CeEEEEECCCCC
Confidence 567888877654322 121222223334456666677743 468888988765
No 46
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=77.01 E-value=2.2 Score=29.83 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=28.6
Q ss_pred ceecccccCCeeecEEEEEeCCCCc--eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCC--ceee
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNR--WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTN--TWLP 77 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~ 77 (133)
.|++|..+ ..++++|..+++ |+.-. . + .....+..++.+|+.++.+ ..+.++|+.++ .|+.
T Consensus 11 ~v~~gs~d-----g~v~a~d~~tG~~~W~~~~--~-~-~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 11 LLFVSTLD-----GSLHAVSKRTGSIKWTLKE--D-P-VLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp EEEEEETT-----SEEEEEETTTCCEEEEEEC--C-C-SCCCC-----CCEEECTTT-----CCEEEC-----CCSEEC
T ss_pred EEEEEcCC-----CEEEEEECCCCCEEEEecC--C-C-ceecceEcCCCEEEEeCCC-----CEEEEEECCCCceeeee
Confidence 34555443 368899988865 65432 1 1 1122334566677776432 45888998655 4653
No 47
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=76.27 E-value=14 Score=24.39 Aligned_cols=58 Identities=10% Similarity=0.172 Sum_probs=30.2
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE----CCEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF----NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
.+..||..+.....+..+..+......+.+ ++.+++.|+.+ ..+..+|+.+.+|..+.
T Consensus 32 ~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-----~~v~iWd~~~~~~~~~~ 93 (297)
T 2pm7_B 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVMIWKEENGRWSQIA 93 (297)
T ss_dssp CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----TEEEEEEBSSSCBCCCE
T ss_pred EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC-----CEEEEEEcCCCceEEEE
Confidence 356677755433322222222222222333 15666777754 56888888887776543
No 48
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=75.39 E-value=8.7 Score=26.66 Aligned_cols=57 Identities=7% Similarity=-0.012 Sum_probs=35.6
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeC
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
.++.+|+.+.++..+..++.+....+++.. ++.+++.++.+ ..+..+|+.+.+..+.
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~ 159 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLED-----EGMDVLDINSGQTVRL 159 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTS-----SSEEEEETTTCCEEEE
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCC-----CeEEEEECCCCeEeee
Confidence 678888877766655444333322233332 56888776643 4588999998876654
No 49
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=74.39 E-value=12 Score=25.05 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=30.0
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE----CCEEEEEecCCCCCccCeEEEEeCCCCceeeC
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF----NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
.+..||..+++...+..+..+......+.+ ++.+++.|+.+ ..+..+|+.+.+|..+
T Consensus 36 ~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D-----~~v~iWd~~~~~~~~~ 96 (316)
T 3bg1_A 36 SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD-----RKVIIWREENGTWEKS 96 (316)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT-----SCEEEECCSSSCCCEE
T ss_pred eEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC-----CEEEEEECCCCcceEE
Confidence 456677766543333222222222222333 25666677754 4578888888776544
No 50
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=73.83 E-value=18 Score=25.37 Aligned_cols=62 Identities=13% Similarity=0.005 Sum_probs=32.3
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccc-cceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRR-KHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.|++|+.++ .+-+||..++....+....... ...+++.. ++.+++.|+.+ ..+..+|.....
T Consensus 179 ~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~ 242 (435)
T 4e54_B 179 QFYASSMEG-----TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKE 242 (435)
T ss_dssp EEEEECSSS-----CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCB
T ss_pred EEEEEeCCC-----EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcce
Confidence 455555543 3567788776554433211111 11223333 56677777753 457788876553
No 51
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=73.06 E-value=11 Score=25.13 Aligned_cols=55 Identities=11% Similarity=-0.057 Sum_probs=32.9
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
..+++||+.+.+-..... + ....+++.. ++.|++.. ...+.+||+.+++++.+..
T Consensus 35 ~~i~~~d~~~~~~~~~~~-~--~~~~~i~~~~dG~l~v~~-------~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 35 KKVCRWDSFTKQVQRVTM-D--APVSSVALRQSGGYVATI-------GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp TEEEEEETTTCCEEEEEC-S--SCEEEEEEBTTSSEEEEE-------TTEEEEEETTTTEEEEEEE
T ss_pred CEEEEEECCCCcEEEEeC-C--CceEEEEECCCCCEEEEE-------CCeEEEEECCCCcEEEEEe
Confidence 567889988876543321 1 111223333 45666643 1478999999988876643
No 52
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=72.70 E-value=22 Score=24.94 Aligned_cols=66 Identities=5% Similarity=-0.096 Sum_probs=34.6
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccc-cceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCceeeC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRR-KHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
.|.+|+.++ .|..||..+..-..+-....+. .-.+++.. ++.+++.|+.+ ..+..+|+.++....+
T Consensus 134 ~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~ 202 (435)
T 4e54_B 134 TVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME-----GTTRLQDFKGNILRVF 202 (435)
T ss_dssp CEEEEETTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-----SCEEEEETTSCEEEEE
T ss_pred EEEEEeCCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-----CEEEEeeccCCceeEE
Confidence 355565554 4667887766543322221111 12233332 45566666654 4577888887765544
No 53
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=70.90 E-value=23 Score=24.72 Aligned_cols=52 Identities=12% Similarity=0.302 Sum_probs=30.4
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+..||..+.+-... +..+.....+...++.+++.|+.+ ..+..+|..+.+-
T Consensus 154 ~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~~ 205 (435)
T 1p22_A 154 TIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSD-----STVRVWDVNTGEM 205 (435)
T ss_dssp CEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETT-----SCEEEEESSSCCE
T ss_pred eEEEEeCCCCeEEEE--EcCCCCcEEEEEECCCEEEEEcCC-----CeEEEEECCCCcE
Confidence 567788877654332 111222223334477777777754 4688888887754
No 54
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=70.57 E-value=34 Score=26.35 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=46.6
Q ss_pred CceeecCCCcccccceEEEEE-CCEEEEEecCCC----CCccCeEEEEeCCCCceeeCCCCCCc----ccceeeEEe---
Q psy14436 26 NRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDD----SMELSSAEKYNPHTNTWLPIVAMTSR----RSGLGPGSL--- 93 (133)
Q Consensus 26 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~----~~~~~~~~~yd~~~~~W~~~~~~~~~----r~~~~~~~~--- 93 (133)
.+|+++..+|.....+.++.. ++.+|+..+-.. ......+++++-...+|+++.+.|.. +..++...+
T Consensus 232 ~tW~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~ 311 (737)
T 2cn3_A 232 VTWKAVPGQPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQ 311 (737)
T ss_dssp SCCEECTTCCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEEEEEEECTT
T ss_pred CceEECCCCCCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCcccccccccEEEcCC
Confidence 479998866654433433332 678888654211 11345788999999999999876542 333343333
Q ss_pred -CCeeeeecC
Q psy14436 94 -QLTLPTLTS 102 (133)
Q Consensus 94 -~~~iy~~gG 102 (133)
.+.+|+.+.
T Consensus 312 ~~~~ly~~~~ 321 (737)
T 2cn3_A 312 NPDIIMVTSM 321 (737)
T ss_dssp CTTCEEEEEE
T ss_pred CCCEEEEEec
Confidence 257777653
No 55
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=69.84 E-value=24 Score=24.21 Aligned_cols=54 Identities=7% Similarity=0.039 Sum_probs=29.4
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEE--ECCEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAV--FNNVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
..+..||..+.+-... +..... ..+.. .++.+++.|+.+ ..+..||+.+.+-..
T Consensus 78 ~~v~i~d~~~~~~~~~--~~~~~~-~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 78 GHDFLFNTIIRDGSKM--LKRADY-TAVDTAKLQMRRFILGTTE-----GDIKVLDSNFNLQRE 133 (420)
T ss_dssp TEEEEEECCSEETTTT--SCSCCE-EEEEEECSSSCEEEEEETT-----SCEEEECTTSCEEEE
T ss_pred CcEEEEEecccceeeE--EecCCc-eEEEEEecCCCEEEEEECC-----CCEEEEeCCCcceee
Confidence 3677888766443222 112221 22222 256777777754 468888888765433
No 56
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=69.08 E-value=13 Score=24.79 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=33.3
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-C-CEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-N-NVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
+.+.+||+.+.+....-+.+.+ ..++.. + +.+|+.... ...+.++|+.+.+...
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQ-----AGKVSVIDAKSYKVVK 308 (353)
T ss_dssp SEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETT-----TTEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECC-----CCeEEEEECCCCeEEE
Confidence 6788999988776443333332 223333 3 468876542 2578999998886543
No 57
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=68.75 E-value=20 Score=22.90 Aligned_cols=78 Identities=12% Similarity=-0.083 Sum_probs=37.9
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEe-
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL- 93 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~- 93 (133)
..+.+||+.+.......... .....+++.. ++.||+... ...+.+||+.......+..... ..-.+++..
T Consensus 46 ~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~------~~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~ 117 (270)
T 1rwi_B 46 GRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDF------NNRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDT 117 (270)
T ss_dssp CEEEEECC-----EECCCCS-CCSCCCEEECTTCCEEEEET------TTEEEEECTTCSCCEECCCCSC-SSEEEEEECT
T ss_pred CcEEEecCCCcccceEeeCC-cCCcceeEECCCCCEEEEcC------CCEEEEEeCCCceEeeeecCCc-CCCcceEECC
Confidence 46778888766554433211 1122334443 467888754 2478899998876554432111 111233332
Q ss_pred CCeeeeec
Q psy14436 94 QLTLPTLT 101 (133)
Q Consensus 94 ~~~iy~~g 101 (133)
++++|+..
T Consensus 118 ~g~l~v~~ 125 (270)
T 1rwi_B 118 QGAVYVAD 125 (270)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEE
Confidence 56787764
No 58
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=68.52 E-value=21 Score=23.19 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=33.2
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
++|..||..+++..+.-....+.....++.+ ++..++.|+.+ ..+..+|..+++-
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~~ 101 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKR 101 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCcee
Confidence 4688999999887654332222222222333 45677777754 4677888887753
No 59
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=68.50 E-value=23 Score=27.14 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=35.3
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEE--C--CEEEEEecCCCCCccCeEEEEeCCCC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--N--NVIYAVGGRDDSMELSSAEKYNPHTN 73 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~ 73 (133)
.|++|+.++ .+..||..+++|..+............+.+ + +.+++.|+.+ ..+..||..+.
T Consensus 69 ~l~s~s~Dg-----~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl~~~ 133 (753)
T 3jro_A 69 ILASCSYDG-----KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKEN 133 (753)
T ss_dssp EEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCSS
T ss_pred EEEEEeCCC-----eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEeecC
Confidence 355555543 467788888877665543333333333333 2 5677777753 46777887765
No 60
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=67.96 E-value=11 Score=25.64 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
..+..||..+++-...- +.+....+++.. ++ .||+.++.+ ..+..+|+.+++...
T Consensus 12 ~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~ 68 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATI--PVGSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIA 68 (391)
T ss_dssp TEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCeEEEEe--ecCCCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEE
Confidence 46888999887654322 112222233332 33 677776533 578889998886543
No 61
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=67.65 E-value=35 Score=25.23 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=45.4
Q ss_pred ceEEEEECCEEEEEe-cCCCCCccCeEEEEeCCCCceeeCC-CCCCcccceeeEEeCCeeeeecCce
Q psy14436 40 HLGCAVFNNVIYAVG-GRDDSMELSSAEKYNPHTNTWLPIV-AMTSRRSGLGPGSLQLTLPTLTSVK 104 (133)
Q Consensus 40 ~~~~~~~~~~iyv~G-G~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~iy~~gG~~ 104 (133)
..|+-..++.||+.- |......-+.+.+-+..-..|..+. |-.......-.+..++.||+||-.+
T Consensus 341 EPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsER 407 (670)
T 3ju4_A 341 EPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSER 407 (670)
T ss_dssp EEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEECS
T ss_pred cchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEeccc
Confidence 355566899999975 4444455677888888888898875 3334445566678899998877553
No 62
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=67.62 E-value=24 Score=23.40 Aligned_cols=66 Identities=9% Similarity=0.037 Sum_probs=34.3
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCceeeC
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
.|++|+.++ .+..||..+........+..+......+.+ ++..++.|+.+ ..+..||..+.+-..+
T Consensus 56 ~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~ 123 (368)
T 3mmy_A 56 FLIAGSWAN-----DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD-----KTAKMWDLSSNQAIQI 123 (368)
T ss_dssp EEEEEETTS-----EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEE
T ss_pred EEEEECCCC-----cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC-----CcEEEEEcCCCCceee
Confidence 345555443 466777776333221222222222223333 45566666643 5788899988876554
No 63
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=67.46 E-value=39 Score=25.81 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=46.0
Q ss_pred cEEEEEeCCCCc--eeecCCCccc--------ccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCC-CC
Q psy14436 16 VSVERFDPKLNR--WTAMAPMSTR--------RKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVA-MT 82 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~-~~ 82 (133)
..++++|..|++ |+.-...+.. ....+.++.++.||+... ...+.++|..+++ |+.-.. -+
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l~AlDa~TG~~~W~~~~~~~~ 153 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGRLEAIDAKTGQRAWSVDTRADH 153 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCSCT
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc------CCEEEEEECCCCCEeeeecCcCCC
Confidence 468899998765 8654322211 112234667888887532 2578999998875 865432 11
Q ss_pred C--cccceeeEEeCCeeeee
Q psy14436 83 S--RRSGLGPGSLQLTLPTL 100 (133)
Q Consensus 83 ~--~r~~~~~~~~~~~iy~~ 100 (133)
. .....+.++.++++|+-
T Consensus 154 ~~~~~~~~sP~v~~g~v~vg 173 (689)
T 1yiq_A 154 KRSYTITGAPRVVNGKVVIG 173 (689)
T ss_dssp TSCCBCCSCCEEETTEEEEC
T ss_pred CCCccccCCcEEECCEEEEE
Confidence 1 12233456678888653
No 64
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=66.33 E-value=24 Score=24.34 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=27.7
Q ss_pred EEEEEeCCCCceeecCCCcccccc-eEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKH-LGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
.+..||..+.+-...- ..+... .+++.. ++..++.|+.+ ..+..+|+.+.+..
T Consensus 146 ~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 146 LIRIWDIENRKIVMIL--QGHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQCS 200 (393)
T ss_dssp CEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEE
T ss_pred eEEEEECCCCcEEEEE--ccCCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCeeE
Confidence 4667888776543321 111111 222222 44555666643 56888888877643
No 65
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=66.22 E-value=16 Score=24.91 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-C-CEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-N-NVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
..+..||..+.+....-. .......++.. + ..||+.++.+ ..+..+|+.+.+-..
T Consensus 138 ~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 138 KTVSVINTVTKAVINTVS--VGRSPKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVID 194 (391)
T ss_dssp TEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCcEEEEEe--cCCCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEE
Confidence 468889988876644321 11212233332 3 3677765532 568889998876443
No 66
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=66.20 E-value=25 Score=23.81 Aligned_cols=69 Identities=9% Similarity=-0.020 Sum_probs=36.1
Q ss_pred ceecccccCCeeecEEEEEeCCCCc----eeecCCCcccccc-eEEEEE-C----C---EEEEEecCCCCCccCeEEEEe
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNR----WTAMAPMSTRRKH-LGCAVF-N----N---VIYAVGGRDDSMELSSAEKYN 69 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~----W~~~~~~p~~r~~-~~~~~~-~----~---~iyv~GG~~~~~~~~~~~~yd 69 (133)
.|++|+.++ .+..||..+.+ +..+..+...... .+++.. + + .+++.|+.+ ..+..||
T Consensus 28 ~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d-----g~i~iw~ 97 (397)
T 1sq9_A 28 FTVSCSGDG-----YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS-----GDLLFYR 97 (397)
T ss_dssp EEEEEETTS-----EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT-----SCEEEEE
T ss_pred eEEEEcCCC-----EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC-----CCEEEEE
Confidence 355555543 57788887766 2222211111111 222222 3 5 777777754 4577777
Q ss_pred CCCCc------eeeCCCC
Q psy14436 70 PHTNT------WLPIVAM 81 (133)
Q Consensus 70 ~~~~~------W~~~~~~ 81 (133)
+.+.+ +..+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~ 115 (397)
T 1sq9_A 98 ITREDETKKVIFEKLDLL 115 (397)
T ss_dssp EEECTTTCCEEEEEECCS
T ss_pred ccCCcccccccceeeccc
Confidence 77665 6665543
No 67
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=66.08 E-value=25 Score=23.07 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=27.6
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+..||..+.+-... +.........+.+ ++.+++.|+.+ ..+..||+.+.+-
T Consensus 88 ~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~ 141 (312)
T 4ery_A 88 TLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVKTGKC 141 (312)
T ss_dssp EEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTCCE
T ss_pred EEEEEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCEE
Confidence 567788877654321 1111111222222 45566667654 4578888877653
No 68
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=66.06 E-value=31 Score=24.09 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=27.7
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+..||..+.+-...- ............++.+++.|+.+ ..+..||+.+.+-
T Consensus 300 ~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~ 351 (445)
T 2ovr_B 300 SIRVWDVETGNCIHTL--TGHQSLTSGMELKDNILVSGNAD-----STVKIWDIKTGQC 351 (445)
T ss_dssp CEEEEETTTCCEEEEE--CCCCSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCE
T ss_pred eEEEEECCCCCEEEEE--cCCcccEEEEEEeCCEEEEEeCC-----CeEEEEECCCCcE
Confidence 4667888776543221 11122222333445555666643 4688889877653
No 69
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=65.81 E-value=26 Score=23.66 Aligned_cols=56 Identities=7% Similarity=0.179 Sum_probs=27.8
Q ss_pred EEEEEeCCCCceeecCCCcc-cccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 17 SVERFDPKLNRWTAMAPMST-RRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
.+..||..++.|.....+.. +......+.+ ++.+++.|+.+ ..+..+|..+..++.
T Consensus 39 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 39 RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----ATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEECCC-EEE
T ss_pred eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----CcEEEEEccCCCeEE
Confidence 35667777777643221111 1112222333 45666777754 345666766665543
No 70
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=65.75 E-value=42 Score=25.52 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=46.0
Q ss_pred cEEEEEeCCCCc--eeecCCCccc--------ccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCC-
Q psy14436 16 VSVERFDPKLNR--WTAMAPMSTR--------RKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMT- 82 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~- 82 (133)
..++++|..|.+ |+.-...+.. ....+.++.++.||+... ...+.++|..+++ |+.-..-+
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~~~ 149 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGRLIALDAKTGKAIWSQQTTDPA 149 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSEEEEEETTTCCEEEEEECSCTT
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC------CCEEEEEECCCCCEeeeeccCCCC
Confidence 468899988765 8664332211 112234567888887532 2578999998875 86543211
Q ss_pred -CcccceeeEEeCCeeeee
Q psy14436 83 -SRRSGLGPGSLQLTLPTL 100 (133)
Q Consensus 83 -~~r~~~~~~~~~~~iy~~ 100 (133)
......+.++.++++|+-
T Consensus 150 ~~~~~~~~P~v~~~~v~vg 168 (668)
T 1kv9_A 150 KPYSITGAPRVVKGKVIIG 168 (668)
T ss_dssp SSCBCCSCCEEETTEEEEC
T ss_pred CcceecCCCEEECCEEEEe
Confidence 112233455678888654
No 71
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=65.70 E-value=39 Score=25.17 Aligned_cols=80 Identities=10% Similarity=-0.015 Sum_probs=45.7
Q ss_pred cEEEEEeC-CCCc--eeecCCCccc--------ccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeC-CCC
Q psy14436 16 VSVERFDP-KLNR--WTAMAPMSTR--------RKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPI-VAM 81 (133)
Q Consensus 16 ~~~~~yd~-~t~~--W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~-~~~ 81 (133)
..++++|. .+++ |+.-...+.. ......+..++.||+... ...+.++|..+++ |+.- ...
T Consensus 73 ~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~~ 146 (571)
T 2ad6_A 73 NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGHLLALDAKTGKINWEVEVCDP 146 (571)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCCG
T ss_pred CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------CCEEEEEECCCCCEEEEecCCCC
Confidence 46899998 7764 8664322111 112345667889987633 2578999998874 8643 221
Q ss_pred CCc-ccceeeEEeCCeeeeec
Q psy14436 82 TSR-RSGLGPGSLQLTLPTLT 101 (133)
Q Consensus 82 ~~~-r~~~~~~~~~~~iy~~g 101 (133)
+.. ....+.++.++++|+-.
T Consensus 147 ~~~~~~~~~P~v~~g~v~vg~ 167 (571)
T 2ad6_A 147 KVGSTLTQAPFVAKDTVLMGC 167 (571)
T ss_dssp GGTCBCCSCCEEETTEEEEEC
T ss_pred CccceeccCCEEECCEEEEEe
Confidence 111 12234456688886543
No 72
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=65.70 E-value=25 Score=22.97 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=28.1
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+..||..+.+....-. .+........+ ++..++.++.+ ..+..||+.+.+-
T Consensus 164 ~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~ 217 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQ--GHTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQ 217 (337)
T ss_dssp CEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred cEEEEeCCCCceeeeee--cccCceEEEEECCCCCEEEEEecC-----CcEEEEECCCCce
Confidence 47788888765433211 11112222233 45566666643 5688888877653
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=65.64 E-value=32 Score=24.04 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=31.9
Q ss_pred EEEEEeCCCCceeec-CCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 17 SVERFDPKLNRWTAM-APMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
.+..||..+.+-... ...........+...++.+++.|+.+ ..+..||+.+.+..
T Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD-----GTVKLWDLKTGEFI 395 (445)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEE
T ss_pred eEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCC-----CeEEEEECCCCcee
Confidence 467788877654332 21111222233444566677777743 57889999888653
No 74
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=65.54 E-value=20 Score=24.77 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=30.5
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
..+.+||+.+.+-..... .+.....++.. ++ .+|+.++.+ ..+..||+.+.+-
T Consensus 283 g~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~ 337 (433)
T 3bws_A 283 GRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKV 337 (433)
T ss_dssp EEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEE
T ss_pred CeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcE
Confidence 478899998876543321 11111222222 33 687776543 5788999987654
No 75
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=65.46 E-value=15 Score=24.17 Aligned_cols=65 Identities=11% Similarity=-0.026 Sum_probs=32.5
Q ss_pred cEEEEEeCC--CCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCC
Q psy14436 16 VSVERFDPK--LNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTS 83 (133)
Q Consensus 16 ~~~~~yd~~--t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 83 (133)
..+.+||.. +.+...+...+.......++.. ++ .||+.+..++ .-.++..|+.+++++.+..++.
T Consensus 253 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---~v~v~~~d~~~g~~~~~~~~~~ 321 (343)
T 1ri6_A 253 SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH---HISVYEIVGEQGLLHEKGRYAV 321 (343)
T ss_dssp TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTC---EEEEEEEETTTTEEEEEEEEEC
T ss_pred CEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCC---eEEEEEEcCCCceeeEcccccc
Confidence 456777776 4455555433332222223332 33 5666543221 1234444888888887765444
No 76
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=63.69 E-value=31 Score=23.35 Aligned_cols=58 Identities=7% Similarity=-0.060 Sum_probs=33.1
Q ss_pred EEEEEeCCCCceeecCCCcccccc-eEEEEEC--CEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKH-LGCAVFN--NVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
.+..||..+.+....-........ .+++... +.+++.++.+ ..+..+|+.+.....+.
T Consensus 97 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~ 157 (383)
T 3ei3_B 97 DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVIQVFA 157 (383)
T ss_dssp CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEEEEEE
T ss_pred eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCceEEEe
Confidence 577888888776554332112222 2333333 3666666643 56788888876655543
No 77
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=63.57 E-value=32 Score=23.39 Aligned_cols=51 Identities=12% Similarity=0.245 Sum_probs=27.8
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+..||..+.+....-. .+......+.+ ++.+++.|+.+ ..+..||+.+.+
T Consensus 221 ~v~~wd~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D-----~~v~lwd~~~~~ 273 (354)
T 2pbi_B 221 KAMVWDMRSGQCVQAFE--THESDVNSVRYYPSGDAFASGSDD-----ATCRLYDLRADR 273 (354)
T ss_dssp CEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTE
T ss_pred eEEEEECCCCcEEEEec--CCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCc
Confidence 46678888776543211 11111222333 45666777754 457778887764
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=62.48 E-value=31 Score=22.85 Aligned_cols=54 Identities=7% Similarity=0.012 Sum_probs=29.5
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
.+..||..+.+-... +..+......+.+ ++..++.++.+ ..+..||+.+.+-..
T Consensus 55 ~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~ 110 (369)
T 3zwl_B 55 SASVWYSLNGERLGT--LDGHTGTIWSIDVDCFTKYCVTGSAD-----YSIKLWDVSNGQCVA 110 (369)
T ss_dssp CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----TEEEEEETTTCCEEE
T ss_pred EEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEE
Confidence 567888877654332 1112222222233 45566666643 468888988776443
No 79
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=62.26 E-value=50 Score=25.18 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=46.6
Q ss_pred cEEEEEeCCCCc--eeecCCCccc--------ccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCC-C-
Q psy14436 16 VSVERFDPKLNR--WTAMAPMSTR--------RKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVA-M- 81 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~-~- 81 (133)
..++++|..|.+ |+.-...+.. ....+.+..++.||+... ...+.++|..+++ |+.-.. -
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~~~ 160 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGRLIALDAATGKEVWHQNTFEGQ 160 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEETTTTC
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC------CCEEEEEECCCCCEEeeecCCcCc
Confidence 568999998865 7664432211 122345667888887532 2578999998775 765322 1
Q ss_pred CC-cccceeeEEeCCeeeeec
Q psy14436 82 TS-RRSGLGPGSLQLTLPTLT 101 (133)
Q Consensus 82 ~~-~r~~~~~~~~~~~iy~~g 101 (133)
+. .....+.++.++++|+-.
T Consensus 161 ~~~~~~~~~p~v~~~~v~v~~ 181 (677)
T 1kb0_A 161 KGSLTITGAPRVFKGKVIIGN 181 (677)
T ss_dssp CSSCBCCSCCEEETTEEEECC
T ss_pred CcCcccccCcEEECCEEEEEe
Confidence 11 112234556688886543
No 80
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=62.09 E-value=33 Score=23.05 Aligned_cols=51 Identities=12% Similarity=0.220 Sum_probs=27.4
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+..||..+.+-... +..+......+.+ ++.+++.|+.+ ..+..||+.+.+
T Consensus 165 ~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d-----~~v~~wd~~~~~ 217 (340)
T 1got_B 165 TCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACD-----ASAKLWDVREGM 217 (340)
T ss_dssp CEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCS
T ss_pred cEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCC-----CcEEEEECCCCe
Confidence 466788877654322 1111111222222 45677777754 457778887764
No 81
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=61.15 E-value=33 Score=24.05 Aligned_cols=61 Identities=3% Similarity=-0.150 Sum_probs=36.7
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
..++.+|..+.+...+...+. ...+.+.. ++ .|++.+..++ ...++.+|+.+++..++...
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~~~~~~~~l~~~ 265 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDG 265 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSS--CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTTCCEEECCCC
T ss_pred cEEEEEECCCCcEEEeecCCC--cccCEEEcCCCCEEEEEEecCC---CceEEEEECCCCCEEeCcCC
Confidence 478999999888766543221 11222222 44 4554544322 35799999999887776543
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=61.15 E-value=37 Score=23.30 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=34.3
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+++|+.++ .+..||..+.+....-...........+.+ ++.+++.|+.+ ..+..||+.+.+-
T Consensus 146 ~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 146 VLLSAGCDN-----VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTV 210 (402)
T ss_dssp EEEEEETTS-----CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEE
T ss_pred EEEEEcCCC-----EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCce
Confidence 455555543 467889888765432110111112222333 45666667643 5788899887754
No 83
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=60.88 E-value=33 Score=22.63 Aligned_cols=57 Identities=9% Similarity=-0.013 Sum_probs=33.3
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
...++++|..+++....-+.+.....+.++.. ++ .+|+.+.. ...+..+|+.+.+-.
T Consensus 20 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~-----~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH-----YGDIYGIDLDTCKNT 78 (349)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC-----CCcEEEEeCCCCcEE
Confidence 35788999998876443222221012333333 34 67776542 257899999887654
No 84
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=59.68 E-value=31 Score=22.52 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=33.6
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
..+++||+.+. ...... +. ....+++.. ++.||+.... ...+.+||+.+++.+.+.
T Consensus 50 ~~i~~~~~~~~-~~~~~~-~~-~~~~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g~~~~~~ 106 (296)
T 3e5z_A 50 NRTWAWSDDGQ-LSPEMH-PS-HHQNGHCLNKQGHLIACSHG-----LRRLERQREPGGEWESIA 106 (296)
T ss_dssp TEEEEEETTSC-EEEEES-SC-SSEEEEEECTTCCEEEEETT-----TTEEEEECSTTCCEEEEE
T ss_pred CEEEEEECCCC-eEEEEC-CC-CCcceeeECCCCcEEEEecC-----CCeEEEEcCCCCcEEEEe
Confidence 46788999887 544432 11 112333332 5678776431 257899999888876653
No 85
>2b4w_A Hypothetical protein, conserved; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.98A {Leishmania major} SCOP: b.67.2.5
Probab=59.65 E-value=30 Score=23.85 Aligned_cols=59 Identities=3% Similarity=0.029 Sum_probs=41.6
Q ss_pred EEECCEEEEEecCCCCC--ccCeEEEEeC-CCCceeeCCCCCCcccceeeEEeCCeeeeecCc
Q psy14436 44 AVFNNVIYAVGGRDDSM--ELSSAEKYNP-HTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSV 103 (133)
Q Consensus 44 ~~~~~~iyv~GG~~~~~--~~~~~~~yd~-~~~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~ 103 (133)
...+++.++.|-...+. ..+.|..|.- ..++|+.++.+.-...-+-.+.+++.+ |+||.
T Consensus 37 F~~~Gk~~I~GRVE~Rd~se~S~V~fFeet~~d~w~~v~~~~~~LqDPF~t~I~gEl-i~GGv 98 (315)
T 2b4w_A 37 FSYKGKTHIYGRVEKRDIWAASHVRLFEETGKDEFTAVPELSWELEDPYIAKINNEM-IFGGT 98 (315)
T ss_dssp EEETTEEEEEEEEECTTCSSCCEEEEEEEEETTEEEECTTCCBSCEEEEEEEETTEE-EEEEE
T ss_pred eeECCEEEEEeeeecCCCccccEEEEEEEcCCCceEECCCCEEEecCccEEEECCEE-EeeeE
Confidence 34688999988876554 3478888866 889999888843445556677788876 45554
No 86
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=59.30 E-value=7.1 Score=25.65 Aligned_cols=56 Identities=9% Similarity=-0.071 Sum_probs=31.8
Q ss_pred ECCEEEEEecCCCCCccCeEEEEe--C-------------CCCceeeCCCC--CCcccceeeEEe--CCeeeeecCceEE
Q psy14436 46 FNNVIYAVGGRDDSMELSSAEKYN--P-------------HTNTWLPIVAM--TSRRSGLGPGSL--QLTLPTLTSVKFT 106 (133)
Q Consensus 46 ~~~~iyv~GG~~~~~~~~~~~~yd--~-------------~~~~W~~~~~~--~~~r~~~~~~~~--~~~iy~~gG~~~~ 106 (133)
.++++|+|-| ..+++|+ + .+..|.-|+.. |... -++... ++++|+|-|...
T Consensus 71 ~~g~~~fFKg-------~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~I--DAA~~~~~~~k~yfFkG~~y- 140 (227)
T 3lp9_A 71 ENNEAFIFYE-------NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGI--DAAYRSTRGKEVYLFKGDQY- 140 (227)
T ss_dssp STTEEEEEET-------TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCC--SEEEECSSTTEEEEEETTEE-
T ss_pred CCCEEEEEeC-------CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcc--cEEEEECCCCEEEEEECCEE-
Confidence 5789999976 4566666 2 12234444321 2222 233333 589999988876
Q ss_pred EEeCC
Q psy14436 107 YIIPG 111 (133)
Q Consensus 107 ~v~gg 111 (133)
..+.+
T Consensus 141 w~~d~ 145 (227)
T 3lp9_A 141 ARIDY 145 (227)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 44443
No 87
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=56.04 E-value=39 Score=22.05 Aligned_cols=56 Identities=14% Similarity=0.044 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCceeecCCCcccc-cceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRR-KHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r-~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
..+..+|..+.+-...-..+... ....++.. ++ .+|+.+.. ...+..+|+.+.+-.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~ 69 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK-----SESLVKIDLVTGETL 69 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT-----TTEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC-----CCeEEEEECCCCCeE
Confidence 46888999887654432222210 12233332 44 67776542 257899999887643
No 88
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=55.88 E-value=38 Score=21.77 Aligned_cols=78 Identities=6% Similarity=-0.023 Sum_probs=40.2
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEe-
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL- 93 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~- 93 (133)
..+++||+ +++..............+++.. ++.||+.... ...+.+||+ +++..... .+...........
T Consensus 162 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~ 233 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFK-IPTPNARPHAITAG 233 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEEC
T ss_pred CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEE-CCCCCCCceeEEEC
Confidence 46888888 7666554211111112233333 4678876432 257899999 77766542 2211112222222
Q ss_pred -CCeeeeec
Q psy14436 94 -QLTLPTLT 101 (133)
Q Consensus 94 -~~~iy~~g 101 (133)
++++|+..
T Consensus 234 ~~g~l~v~~ 242 (299)
T 2z2n_A 234 AGIDLWFTE 242 (299)
T ss_dssp STTCEEEEE
T ss_pred CCCCEEEec
Confidence 46777664
No 89
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=55.87 E-value=37 Score=21.60 Aligned_cols=56 Identities=16% Similarity=0.017 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
..+.+||+.+.....+... ......+++.. ++.||+.... ...+.++|..+.....
T Consensus 87 ~~i~~~d~~~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~ 143 (270)
T 1rwi_B 87 NRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTV 143 (270)
T ss_dssp TEEEEECTTCSCCEECCCC-SCSSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSCEE
T ss_pred CEEEEEeCCCceEeeeecC-CcCCCcceEECCCCCEEEEECC-----CCEEEEEECCCceeEe
Confidence 4678888877655443321 11122334443 5678887542 2568888877665443
No 90
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=55.79 E-value=49 Score=23.00 Aligned_cols=51 Identities=8% Similarity=0.137 Sum_probs=26.4
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+..||..+.+.... +..+......+.+ ++.+++.|+.+ ..+..||+.+.+
T Consensus 131 ~i~vwd~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~D-----~~i~iwd~~~~~ 183 (410)
T 1vyh_C 131 TIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSAD-----MTIKLWDFQGFE 183 (410)
T ss_dssp CEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCCCEEETTSSC
T ss_pred eEEEEECCCCcEEEE--EeccCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Confidence 467788877654332 1111111222222 45677777754 345667776654
No 91
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=55.54 E-value=45 Score=22.49 Aligned_cols=80 Identities=10% Similarity=-0.083 Sum_probs=41.1
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE--CCE-EEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEE
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNV-IYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGS 92 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 92 (133)
..++.+|..+.++..+.. ..+........+ ++. |+...- ........+..+|+.+++.+.+...+.. . ....
T Consensus 216 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~l~~~d~~~g~~~~l~~~~~~--~-~~~s 290 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVSY-FKGQTDRVIYKANPETLENEEVMVMPPC--S-HLMS 290 (396)
T ss_dssp CCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEEE-ETTTCCEEEEEECTTTCCEEEEEECCSE--E-EEEE
T ss_pred ceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEec-CCCCccceEEEEECCCCCeEEeeeCCCC--C-CCcc
Confidence 578889988777766654 111111112222 443 444322 1111224599999998887766544421 1 2222
Q ss_pred e-CCeeeee
Q psy14436 93 L-QLTLPTL 100 (133)
Q Consensus 93 ~-~~~iy~~ 100 (133)
- +++++++
T Consensus 291 ~~dg~~l~~ 299 (396)
T 3c5m_A 291 NFDGSLMVG 299 (396)
T ss_dssp CSSSSEEEE
T ss_pred CCCCceEEE
Confidence 3 6666554
No 92
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=54.73 E-value=69 Score=24.46 Aligned_cols=75 Identities=13% Similarity=0.089 Sum_probs=42.5
Q ss_pred cEEEEEeCCCCc--eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCccc-ceee
Q psy14436 16 VSVERFDPKLNR--WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSRRS-GLGP 90 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~-~~~~ 90 (133)
..+.++|+.|++ |+.-...| ...-.++..++.+|+ |.. ...+..||..+++ |+.- ++.... ....
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~--~~~g~~~tagglvf~-gt~-----dg~l~a~D~~tG~~lw~~~--~~~~~~~~p~t 524 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI--FNGGTLSTAGNLVFE-GSA-----DGRVIAYAADTGEKLWEQP--AASGVMAAPVT 524 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS--CCCCEEEETTTEEEE-ECT-----TSEEEEEETTTCCEEEEEE--CSSCCCSCCEE
T ss_pred eeEEEEECCCCCeEeEccCCCC--ccCccceECCCEEEE-ECC-----CCcEEEEECCCCccceeee--CCCCcccCceE
Confidence 678899999875 76432222 222223334555554 432 3579999999886 6542 232222 2233
Q ss_pred EEeCCeeeee
Q psy14436 91 GSLQLTLPTL 100 (133)
Q Consensus 91 ~~~~~~iy~~ 100 (133)
...+|+.||.
T Consensus 525 y~~~G~qyv~ 534 (689)
T 1yiq_A 525 YSVDGEQYVT 534 (689)
T ss_dssp EEETTEEEEE
T ss_pred EEECCEEEEE
Confidence 3578888764
No 93
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=54.72 E-value=42 Score=21.95 Aligned_cols=61 Identities=11% Similarity=0.194 Sum_probs=32.0
Q ss_pred ceecccccCCeeecEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 3 ~~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+++|+.++ .+..||..+.+-... ++..........+ ++.+++.|+.+ ..+..||+.+.+-
T Consensus 121 ~l~s~~~d~-----~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~ 183 (312)
T 4ery_A 121 LIVSGSFDE-----SVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYD-----GLCRIWDTASGQC 183 (312)
T ss_dssp EEEEEETTS-----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCE
T ss_pred EEEEEeCCC-----cEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCce
Confidence 344555443 467788877654321 1112222222233 45666777654 4577888877653
No 94
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=54.45 E-value=72 Score=24.54 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=34.8
Q ss_pred cEEEEEeCCCCceeecCCCc--cc-ccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMS--TR-RKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p--~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
.-+.+||+.++++....... .+ ..-.+++.. ++.|++- .. ..+.+||+.+++|+....
T Consensus 427 ~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~------~Gl~~~~~~~~~~~~~~~ 488 (795)
T 4a2l_A 427 GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL------SALVRFNPEQRSFTTIEK 488 (795)
T ss_dssp TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES------SCEEEEETTTTEEEECCB
T ss_pred CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec------CceeEEeCCCCeEEEccc
Confidence 45778899888877664311 11 111222222 4677764 22 358899999999987753
No 95
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=54.14 E-value=44 Score=21.97 Aligned_cols=54 Identities=4% Similarity=-0.043 Sum_probs=33.2
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
-+.+..||+.+++....-..+ .....++.. ++ .||+.+..+ ..+..+|+.+++-
T Consensus 19 ~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 19 LRRISFFSTDTLEILNQITLG--YDFVDTAITSDCSNVVVTSDFC-----QTLVQIETQLEPP 74 (331)
T ss_dssp GTEEEEEETTTCCEEEEEECC--CCEEEEEECSSSCEEEEEESTT-----CEEEEEECSSSSC
T ss_pred CCeEEEEeCcccceeeeEEcc--CCcceEEEcCCCCEEEEEeCCC-----CeEEEEECCCCce
Confidence 357889999998875543322 222233332 34 577765422 4889999988874
No 96
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=53.87 E-value=47 Score=22.27 Aligned_cols=51 Identities=14% Similarity=0.313 Sum_probs=26.7
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+..||..+..-... +..+......+.+ ++.+++.|+.+ ..+..||+.+.+
T Consensus 207 ~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~d-----~~v~iwd~~~~~ 259 (340)
T 1got_B 207 SAKLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQ 259 (340)
T ss_dssp CEEEEETTTCSEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTE
T ss_pred cEEEEECCCCeeEEE--EcCCcCCEEEEEEcCCCCEEEEEcCC-----CcEEEEECCCCc
Confidence 466788776543321 1111111222222 45667777754 457788887764
No 97
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=53.82 E-value=45 Score=22.02 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=28.3
Q ss_pred cEEEEEeCCC-CceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 16 VSVERFDPKL-NRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 16 ~~~~~yd~~t-~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
..+..||..+ .+-... +...........+ ++.+++.++.+ ..+..||..+.+-.
T Consensus 197 g~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 197 GKISKYDVSNNYEYVDS--IDLHEKSISDMQFSPDLTYFITSSRD-----TNSFLVDVSTLQVL 253 (369)
T ss_dssp SEEEEEETTTTTEEEEE--EECCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEE
T ss_pred CEEEEEECCCCcEeEEE--EecCCCceeEEEECCCCCEEEEecCC-----ceEEEEECCCCcee
Confidence 3577899877 232221 1111222222233 45566666643 46888898877643
No 98
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=53.77 E-value=47 Score=22.20 Aligned_cols=52 Identities=8% Similarity=0.105 Sum_probs=27.8
Q ss_pred EEEEEeCCCCceeecCCCcccccc-eEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKH-LGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+..||..+.+-... +...... .+++.. ++.+++.|+.+ ..+..||+.+.+.
T Consensus 187 ~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~d-----g~i~iwd~~~~~~ 240 (321)
T 3ow8_A 187 IINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDD-----GYIKIYDVQHANL 240 (321)
T ss_dssp CEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECTT-----SCEEEEETTTCCE
T ss_pred eEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcCC-----CeEEEEECCCcce
Confidence 467788877654321 1111111 122222 56677777653 4578888877654
No 99
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=53.66 E-value=67 Score=24.62 Aligned_cols=84 Identities=6% Similarity=-0.071 Sum_probs=45.9
Q ss_pred EE-EEEeCCCCceeecCC---CcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCC---CCCCcccc-
Q psy14436 17 SV-ERFDPKLNRWTAMAP---MSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV---AMTSRRSG- 87 (133)
Q Consensus 17 ~~-~~yd~~t~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~- 87 (133)
-+ .+||+.++++..... +|.... .+++.. ++.|++.+. .-+.+|||.+.+++... -++.....
T Consensus 559 Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~ 630 (781)
T 3v9f_A 559 GLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSNNIPQGSFIS 630 (781)
T ss_dssp EEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGGTCCSSCEEE
T ss_pred CceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccCCcccccccc
Confidence 45 788888887766532 332222 233333 467887532 35888999999877654 23322221
Q ss_pred eeeEEe-CCeeeeecCceEEEEe
Q psy14436 88 LGPGSL-QLTLPTLTSVKFTYII 109 (133)
Q Consensus 88 ~~~~~~-~~~iy~~gG~~~~~v~ 109 (133)
.+++.. +|++ .||+......+
T Consensus 631 ~~~~~~~~G~l-~~g~~~Gl~~f 652 (781)
T 3v9f_A 631 GCVTKDHNGLI-YFGSINGLCFF 652 (781)
T ss_dssp EEEEECTTSCE-EEEETTEEEEE
T ss_pred CceEECCCCEE-EEECCCceEEE
Confidence 233333 4555 45655554444
No 100
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=52.73 E-value=50 Score=22.23 Aligned_cols=64 Identities=5% Similarity=-0.139 Sum_probs=35.6
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEE--CCE-EEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNV-IYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
...++.+|..+.+...+.. ........+.. ++. |++............++.+|+...+++.+..
T Consensus 167 ~~~l~~~d~~~g~~~~~~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 233 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQ--DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE 233 (396)
T ss_dssp CEEEEEEETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC
T ss_pred cceEEEEECCCCcEEeecc--CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec
Confidence 4578999999887766542 12211222332 243 5444321111112578899998888777754
No 101
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=51.95 E-value=74 Score=24.39 Aligned_cols=57 Identities=5% Similarity=-0.003 Sum_probs=35.5
Q ss_pred cEEEEEeCCCCceeecCCCccc-ccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTR-RKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
.-+++||+.+++++.......+ ..-.+++.. ++.|++. .. ..+.+||+.+++|+...
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~------~Gl~~~~~~~~~~~~~~ 485 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH------AGVFVIDLASKKVIHHY 485 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET------TEEEEEESSSSSCCEEE
T ss_pred CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC------CceEEEeCCCCeEEecc
Confidence 4678899988888776532111 112233333 4677764 21 46889999999887654
No 102
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=51.36 E-value=71 Score=23.62 Aligned_cols=63 Identities=6% Similarity=0.033 Sum_probs=36.2
Q ss_pred cEEEEEeCC-CCceeecCCCccc--ccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 16 VSVERFDPK-LNRWTAMAPMSTR--RKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 16 ~~~~~yd~~-t~~W~~~~~~p~~--r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
.+++.+|.. ++++.+...+... ......+.. +++||+.+..++ ...++.+|+.+++++++.+.
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~ 283 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTG---WWNLHRVDPATGAATQLCRR 283 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTS---SCEEEEECTTTCCEEESSCC
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCC---CeEEEEEECCCCceeecccc
Confidence 578999988 5633222222211 111222222 567776665432 34799999988999887643
No 103
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=50.98 E-value=75 Score=23.74 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=35.0
Q ss_pred ecEEEEEeCCCC-ceeecCCCccccc---ceEEEE-E--CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 15 QVSVERFDPKLN-RWTAMAPMSTRRK---HLGCAV-F--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 15 ~~~~~~yd~~t~-~W~~~~~~p~~r~---~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
...++.+|..+. ....+........ ...++. - ++++++.+..++ ...++.+|......+.+..
T Consensus 283 ~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~ 352 (706)
T 2z3z_A 283 ECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTK 352 (706)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCC
T ss_pred eeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCC
Confidence 458889999887 5655431111110 011222 2 667655554332 3678888877777777654
No 104
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=50.77 E-value=47 Score=21.31 Aligned_cols=55 Identities=7% Similarity=-0.002 Sum_probs=30.4
Q ss_pred cEEEEEeCCCCceeecCCCcccc-cceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRR-KHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
+.+.+||+ +++..... .+... ...+++.. ++.||+.... ...+.+||+ +.+...+
T Consensus 204 ~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~ 260 (299)
T 2z2n_A 204 NKIGRITT-SGEITEFK-IPTPNARPHAITAGAGIDLWFTEWG-----ANKIGRLTS-NNIIEEY 260 (299)
T ss_dssp TEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEETT-----TTEEEEEET-TTEEEEE
T ss_pred ceEEEECC-CCcEEEEE-CCCCCCCceeEEECCCCCEEEeccC-----CceEEEECC-CCceEEE
Confidence 46888998 77765542 12111 22233333 4678876421 257889998 4544443
No 105
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=50.73 E-value=47 Score=21.31 Aligned_cols=78 Identities=10% Similarity=-0.012 Sum_probs=40.4
Q ss_pred cEEEEEeCCCCceeecCCCccc-ccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEe
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTR-RKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL 93 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 93 (133)
..+.+||+. .+...... +.. ...++++.. ++.||+.... ...+.+||+. ++............-.+++..
T Consensus 41 ~~v~~~~~~-~~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~ 112 (300)
T 2qc5_A 41 NKISSLDQS-GRIKEFEV-PTPDAKVMCLIVSSLGDIWFTENG-----ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEG 112 (300)
T ss_dssp TEEEEECTT-SCEEEEEC-SSTTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred CeEEEECCC-CceEEEEC-CCCCCcceeEEECCCCCEEEEecC-----CCeEEEECCC-CCeEEecCCCCCCCCccceEC
Confidence 467888887 66655432 211 222333333 4678886432 2568899988 666544211111112233332
Q ss_pred -CCeeeeec
Q psy14436 94 -QLTLPTLT 101 (133)
Q Consensus 94 -~~~iy~~g 101 (133)
++++|+.+
T Consensus 113 ~~g~l~v~~ 121 (300)
T 2qc5_A 113 LNGDIWFTQ 121 (300)
T ss_dssp STTCEEEEE
T ss_pred CCCCEEEEc
Confidence 56777654
No 106
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=50.21 E-value=52 Score=21.69 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=29.3
Q ss_pred cEEEEEeCCCCc--eeecCCCcccccceEEEE-ECCEEEEEecCCCCCccCeEEEEeCCCCc--eee
Q psy14436 16 VSVERFDPKLNR--WTAMAPMSTRRKHLGCAV-FNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLP 77 (133)
Q Consensus 16 ~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~ 77 (133)
..+..+|+++++ |+.-.. .....+.++. -++.|++.+ ...+..||+ +++ |+.
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~--~~~~~~~~~~~pdG~ilvs~-------~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLE--KGWECNSVAATKAGEILFSY-------SKGAKMITR-DGRELWNI 71 (276)
T ss_dssp SEEEEEETTTTEEEEEEECC--TTCCCCEEEECTTSCEEEEC-------BSEEEEECT-TSCEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCC--ccCCCcCeEECCCCCEEEeC-------CCCEEEECC-CCCEEEEE
Confidence 567789987875 543321 1111233333 367777732 246889998 443 654
No 107
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=49.20 E-value=52 Score=21.43 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=28.8
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.++.+|+.+.+-..++..+......+++.. ++ .||+. ...+.+||+.+.+-
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~ 272 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNAS 272 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEE
T ss_pred ceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcC
Confidence 688999998776533221111122223332 33 56654 15789999987754
No 108
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=48.81 E-value=54 Score=21.52 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=26.3
Q ss_pred EEEEEeCCCCceeecCCCcccccc-eEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKH-LGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+..||..+..-... +...... .+++.. ++.+++.|+.+ ..+..||+.+.+
T Consensus 36 ~v~lWd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~s~d-----~~i~vwd~~~~~ 88 (304)
T 2ynn_A 36 RVELWNYETQVEVRS--IQVTETPVRAGKFIARKNWIIVGSDD-----FRIRVFNYNTGE 88 (304)
T ss_dssp EEEEEETTTTEEEEE--EECCSSCEEEEEEEGGGTEEEEEETT-----SEEEEEETTTCC
T ss_pred cEEEEECCCCceeEE--eeccCCcEEEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
Confidence 566788877654321 1111111 122222 45566666643 467778877664
No 109
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=48.76 E-value=87 Score=23.86 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=39.0
Q ss_pred EEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCc--------ccceeeEEeCCeeeeecCceEEEEeC
Q psy14436 42 GCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSR--------RSGLGPGSLQLTLPTLTSVKFTYIIP 110 (133)
Q Consensus 42 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iy~~gG~~~~~v~g 110 (133)
..++.++.||+... ...+.++|..+.+ |+.-...+.. ....+.++.+++||+......++.+.
T Consensus 72 ~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD 144 (677)
T 1kb0_A 72 TPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALD 144 (677)
T ss_dssp CCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEE
T ss_pred CCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEE
Confidence 34567999998754 2568899988774 8765432211 11235566788887766554445554
No 110
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=48.73 E-value=65 Score=22.42 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=30.1
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
.+..||..+..-..... ........+...++.+++.|+ + ..+..||..+++-..
T Consensus 373 ~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d-----g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 373 SIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-E-----NQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-T-----TEEEEEETTTCCEEE
T ss_pred cEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-C-----CeEEEEECCCCcEEe
Confidence 46778887654322111 111222233345666666665 2 478999999887554
No 111
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=48.56 E-value=57 Score=21.64 Aligned_cols=56 Identities=9% Similarity=-0.007 Sum_probs=27.5
Q ss_pred cEEEEEeCCC-CceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 16 VSVERFDPKL-NRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 16 ~~~~~yd~~t-~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
+.+++||... .+...............++.. ++.||+.-.. .+.+.+||+. .+...
T Consensus 189 ~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~-----~~~V~~~~~~-G~~~~ 246 (306)
T 2p4o_A 189 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI-----YNSVVRIAPD-RSTTI 246 (306)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT-----TCCEEEECTT-CCEEE
T ss_pred CEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCC-----CCeEEEECCC-CCEEE
Confidence 5677888764 221111100000112234443 5688887432 3568899986 44433
No 112
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=48.48 E-value=59 Score=21.82 Aligned_cols=55 Identities=9% Similarity=-0.113 Sum_probs=33.7
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEE-ECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAV-FNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
..+++||+.+++...... +. ...+++. -++.+++... ..+.+||+.+++.+.+..
T Consensus 71 ~~i~~~d~~~~~~~~~~~-~~--~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 71 RELHELHLASGRKTVHAL-PF--MGSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp TEEEEEETTTTEEEEEEC-SS--CEEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEEC
T ss_pred CEEEEEECCCCcEEEEEC-CC--cceEEEEeCCCeEEEEEC-------CCEEEEECCCCcEEEEee
Confidence 468889998876554321 21 1222332 4678877531 358899999888776643
No 113
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=48.40 E-value=56 Score=21.56 Aligned_cols=59 Identities=3% Similarity=-0.019 Sum_probs=34.4
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
..+++||+.+++...+...+ .....+++.. ++.+|+..... ......+.+||+.+.+.+
T Consensus 66 ~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~-~~~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 66 GNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNLQ 125 (333)
T ss_dssp CEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSCE
T ss_pred CEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCC-CCCCceEEEEeCCCCEEE
Confidence 46888999888776643111 1222333333 56788765322 112257899999888765
No 114
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=48.40 E-value=56 Score=21.55 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=29.0
Q ss_pred EEEEEeCCCCceeecCCCcccccc-eEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKH-LGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+..||..+.+-... +...... .+++.. ++.+++.|+.+ ..+..||+.+.+-
T Consensus 96 ~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~ 150 (366)
T 3k26_A 96 IIRIINPITMQCIKH--YVGHGNAINELKFHPRDPNLLLSVSKD-----HALRLWNIQTDTL 150 (366)
T ss_dssp EEEEECTTTCCEEEE--EESCCSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTTTEE
T ss_pred EEEEEEchhceEeee--ecCCCCcEEEEEECCCCCCEEEEEeCC-----CeEEEEEeecCeE
Confidence 577888877654322 1111112 222222 45677777753 4688889887754
No 115
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=48.31 E-value=62 Score=21.99 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=26.6
Q ss_pred EEEEEeCCCCceeecCCCcccccce-EEEEE-C-CEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHL-GCAVF-N-NVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+..||..+.+-...- ..+.... +++.. + ..+++.++.+ ..+..||+.+.+-
T Consensus 162 ~v~iwd~~~~~~~~~~--~~h~~~v~~v~~s~~~~~~~~s~~~d-----g~v~~wd~~~~~~ 216 (357)
T 4g56_B 162 SVKVWDLSQKAVLKSY--NAHSSEVNCVAACPGKDTIFLSCGED-----GRILLWDTRKPKP 216 (357)
T ss_dssp CEEEEETTTTEEEEEE--CCCSSCEEEEEECTTCSSCEEEEETT-----SCEEECCTTSSSC
T ss_pred eEEEEECCCCcEEEEE--cCCCCCEEEEEEccCCCceeeeeccC-----CceEEEECCCCce
Confidence 3667888776543321 1111112 22222 2 3466666643 4577888877653
No 116
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=48.27 E-value=84 Score=23.59 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=13.9
Q ss_pred ecEEEEEeCCCCceeecC
Q psy14436 15 QVSVERFDPKLNRWTAMA 32 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~ 32 (133)
..+++.+|..+.+..++.
T Consensus 63 ~~~i~~~d~~~g~~~~~~ 80 (741)
T 2ecf_A 63 QLDLWSYDIGSGQTRLLV 80 (741)
T ss_dssp EEEEEEEETTTCCEEEEE
T ss_pred ccEEEEEECCCCceeEcc
Confidence 448999999998876654
No 117
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=47.98 E-value=89 Score=23.74 Aligned_cols=63 Identities=11% Similarity=-0.027 Sum_probs=38.1
Q ss_pred EEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCc--------ccceeeEEeCCeeeeecCceEEEEeC
Q psy14436 42 GCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSR--------RSGLGPGSLQLTLPTLTSVKFTYIIP 110 (133)
Q Consensus 42 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iy~~gG~~~~~v~g 110 (133)
..++.++.||+... ...+.++|..+++ |+.-...+.. ....+.++.++++|+-.....++.+.
T Consensus 61 ~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD 133 (668)
T 1kv9_A 61 TPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALD 133 (668)
T ss_dssp CCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEE
T ss_pred CCEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEE
Confidence 44567999998754 2578889987774 8764332211 01234556788887765444445554
No 118
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.84 E-value=65 Score=22.10 Aligned_cols=58 Identities=5% Similarity=-0.036 Sum_probs=29.4
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
..+..||..+.+-...-. ....-.+++.. ++ .|++.+|.. ...+..||..+.......
T Consensus 284 ~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~----dg~i~v~~~~~~~~~~~~ 343 (401)
T 4aez_A 284 KQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFP----DNNLSIWSYSSSGLTKQV 343 (401)
T ss_dssp CEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTT----TCEEEEEEEETTEEEEEE
T ss_pred CEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecC----CCcEEEEecCCccceeEE
Confidence 357788887765433221 11111222222 33 455554532 256888888877665543
No 119
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=47.58 E-value=30 Score=24.64 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=34.9
Q ss_pred eecEEEEEeCCCCceeecCCCcccccceEEEE-ECC--EEEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 14 LQVSVERFDPKLNRWTAMAPMSTRRKHLGCAV-FNN--VIYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 14 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
.-++++++|.+|.+-.+- .+.+....++++ -++ .||+..+. ...+.++|..+.+-.
T Consensus 309 ~~~~V~viD~~t~kv~~~--i~vg~~~~~lavs~D~~~~ly~tn~~-----~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 309 ASRFVVVLDAKTGERLAK--FEMGHEIDSINVSQDEKPLLYALSTG-----DKTLYIHDAESGEEL 367 (386)
T ss_dssp CEEEEEEEETTTCCEEEE--EEEEEEECEEEECSSSSCEEEEEETT-----TTEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCeEEEE--EECCCCcceEEECCCCCeEEEEEcCC-----CCeEEEEECCCCcEE
Confidence 357899999999876443 222222223333 343 57775442 368899999988753
No 120
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=47.18 E-value=64 Score=21.87 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=23.6
Q ss_pred EEEEEeCCCCceeecCCCccccc-ceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCC
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRK-HLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTN 73 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~-~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~ 73 (133)
.+..||..+.+-... ++.+.. -.+++.. ++ .+++.++.+ ..+..||+.+.
T Consensus 286 ~v~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~~l~s~~~d-----~~i~iw~~~~~ 338 (416)
T 2pm9_A 286 TVLLWNPESAEQLSQ--FPARGNWCFKTKFAPEAPDLFACASFD-----NKIEVQTLQNL 338 (416)
T ss_dssp EEEEECSSSCCEEEE--EECSSSCCCCEEECTTCTTEEEECCSS-----SEEEEEESCCC
T ss_pred CEEEeeCCCCcccee--ecCCCCceEEEEECCCCCCEEEEEecC-----CcEEEEEccCC
Confidence 577888877644221 111111 1122222 33 566666643 34566665543
No 121
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=47.17 E-value=91 Score=23.60 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=27.2
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+..||..+.+-... +..+......+.+ ++.+++.|+.+ ..+..||+.+.+-
T Consensus 209 ~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~v~vwd~~~~~~ 262 (814)
T 3mkq_A 209 TIKIWDYQTKSCVAT--LEGHMSNVSFAVFHPTLPIIISGSED-----GTLKIWNSSTYKV 262 (814)
T ss_dssp EEEEEETTTTEEEEE--EECCSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTCSE
T ss_pred EEEEEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcE
Confidence 577888877553221 1111112222222 45566667643 4577788877543
No 122
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=46.89 E-value=55 Score=21.03 Aligned_cols=53 Identities=8% Similarity=0.066 Sum_probs=27.3
Q ss_pred EEEEEeCCCCceeecCCCcccccc-eEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKH-LGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
.+..||..+.+-... +..+... .+++.. ++. ++.|+.+ ..+..||+.+.+...
T Consensus 206 ~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 206 LIKLVDMHTGDVLRT--YEGHESFVYCIKLLPNGD-IVSCGED-----RTVRIWSKENGSLKQ 260 (313)
T ss_dssp EEEEEETTTCCEEEE--EECCSSCEEEEEECTTSC-EEEEETT-----SEEEEECTTTCCEEE
T ss_pred eEEEEECCchhhhhh--hhcCCceEEEEEEecCCC-EEEEecC-----CEEEEEECCCCceeE
Confidence 577888876543221 1111111 222332 343 4555543 568889988876443
No 123
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=46.86 E-value=96 Score=23.82 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=35.0
Q ss_pred EEEEEeCCCCceeecCC---CcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 17 SVERFDPKLNRWTAMAP---MSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
-+.+||+.++++..... +|... -.+++.. ++.|++.+. .-+.+|||.+++++...
T Consensus 563 Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~ 621 (795)
T 4a2l_A 563 GFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFT 621 (795)
T ss_dssp CEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET-------TEEEEEETTTTEEEEEC
T ss_pred CceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcC
Confidence 47889999888876542 22222 1233333 467887542 46889999999887654
No 124
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=46.80 E-value=60 Score=21.39 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=29.9
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEE---ECCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAV---FNNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+..||..+.+........ ..-.+++. -++.+++.++.+ ..+..||+.+.+
T Consensus 109 ~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 162 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIAQHD--APVKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEETTTTEEEEEEECS--SCEEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSS
T ss_pred cEEEEEcCCCCceeecccc--CceEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCc
Confidence 5778898887765543211 11122222 245777777754 468888887764
No 125
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=45.56 E-value=87 Score=22.94 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=30.5
Q ss_pred cEEEEEeCCCCceeec--CCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCC
Q psy14436 16 VSVERFDPKLNRWTAM--APMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTN 73 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 73 (133)
+..|+||..+.+.... +.+|. . -++....+++|+|-| +..++||+.+.
T Consensus 167 ~~yw~yd~~~~~~~~~~w~gi~~--i-DAA~~~~g~~YfFkG-------~~y~rfd~~~~ 216 (460)
T 1qhu_A 167 NRKWFWDLTTGTKKERSWPAVGN--C-TSALRWLGRYYCFQG-------NQFLRFNPVSG 216 (460)
T ss_dssp TEEEEEETTTTEEEEECCTTSCC--C-SEEEEETTEEEEEET-------TEEEEECTTTC
T ss_pred ccEEEEecccceeecccCCCCCc--c-chheeeCCceEEEEC-------CEEEEEcCccC
Confidence 5678999987654331 22222 2 244455789999977 56778887654
No 126
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=45.41 E-value=59 Score=20.93 Aligned_cols=59 Identities=8% Similarity=0.095 Sum_probs=30.5
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
+.+.+||+.......+..........+++.. ++.||+....++ ..+.+||+....-..+
T Consensus 185 ~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~ 244 (286)
T 1q7f_A 185 HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN----FNLTIFTQDGQLISAL 244 (286)
T ss_dssp TEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS----CEEEEECTTSCEEEEE
T ss_pred CEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC----EEEEEECCCCCEEEEE
Confidence 4688888865443333321101112233333 568888754321 2789999765543333
No 127
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=45.33 E-value=76 Score=24.03 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=29.5
Q ss_pred cEEEEEeCCCCceeecCCCcccccc-eEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKH-LGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
..+..||..+++....-. .+... .+++.. ++..+++|+.+ ..+..||..+.+..
T Consensus 35 g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~~ 90 (814)
T 3mkq_A 35 GRVEIWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDD-----FRIRVFNYNTGEKV 90 (814)
T ss_dssp SEEEEEETTTTEEEEEEE--CCSSCEEEEEEEGGGTEEEEEETT-----SEEEEEETTTCCEE
T ss_pred CEEEEEECCCCceEEEEe--cCCCcEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEE
Confidence 367889987766533211 11111 222222 45566666643 56888888877653
No 128
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=45.21 E-value=58 Score=20.83 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
..+.+||+. ++.............+.++.. ++.||+.... ...+.++|+. ++...
T Consensus 83 ~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g~~~~ 138 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN-----GDRIGKLTAD-GTIYE 138 (300)
T ss_dssp TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETT-----TTEEEEECTT-SCEEE
T ss_pred CeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccC-----CCeEEEECCC-CCEEE
Confidence 458889887 666544321112222344443 5788876432 2478889987 65543
No 129
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=44.83 E-value=1e+02 Score=23.53 Aligned_cols=81 Identities=16% Similarity=0.028 Sum_probs=41.7
Q ss_pred EEEEEeCCCCceeecC--CCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEEe-
Q psy14436 17 SVERFDPKLNRWTAMA--PMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL- 93 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~- 93 (133)
-+.+||+.++++.... .+|.. ...+++..++.|++-.. .-+.+|||.+.+..... ++......++...
T Consensus 537 Gl~~~~~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 607 (758)
T 3ott_A 537 GVMRINPKDESQQSISFGSFSNN-EILSMTCVKNSIWVSTT-------NGLWIIDRKTMDARQQN-MTNKRFTSLLFDPK 607 (758)
T ss_dssp EEEEECC--CCCCBCCCCC---C-CEEEEEEETTEEEEEES-------SCEEEEETTTCCEEEC---CCCCCSEEEEETT
T ss_pred ceEEEecCCCceEEecccCCCcc-ceEEEEECCCCEEEECC-------CCeEEEcCCCceeEEec-CCCCceeeeEEECC
Confidence 4778999888776653 23322 22344445788887542 45889999998876542 2222222222222
Q ss_pred CCeeeeecCceEEE
Q psy14436 94 QLTLPTLTSVKFTY 107 (133)
Q Consensus 94 ~~~iy~~gG~~~~~ 107 (133)
+|.| .|||.....
T Consensus 608 ~G~l-~fG~~~Gl~ 620 (758)
T 3ott_A 608 EDCV-YLGGADGFG 620 (758)
T ss_dssp TTEE-EEECBSEEE
T ss_pred CCcE-EEecCCceE
Confidence 4444 566665433
No 130
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=43.98 E-value=99 Score=23.12 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=37.2
Q ss_pred EEEEECCEEEEEecCCCCCccCeEEEEeCCCCc--eeeCCCCCCc---c---cceeeEEeCCeeeeecCceEEEEeC
Q psy14436 42 GCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT--WLPIVAMTSR---R---SGLGPGSLQLTLPTLTSVKFTYIIP 110 (133)
Q Consensus 42 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~---r---~~~~~~~~~~~iy~~gG~~~~~v~g 110 (133)
..++.++.||+.... ..+.++|..+.+ |+.-...+.. . ...+.++.++++|+......++.+.
T Consensus 63 ~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD 133 (582)
T 1flg_A 63 QAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALN 133 (582)
T ss_dssp CCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEE
T ss_pred ccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEE
Confidence 345679999987653 248999998775 8764332211 0 1234556788887754333334443
No 131
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=43.32 E-value=71 Score=21.30 Aligned_cols=26 Identities=4% Similarity=-0.050 Sum_probs=16.9
Q ss_pred CCEEEEEecCCCCCccCeEEEEeCCCCceee
Q psy14436 47 NNVIYAVGGRDDSMELSSAEKYNPHTNTWLP 77 (133)
Q Consensus 47 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 77 (133)
++.+++.|+.+ ..+..||+.+.+-..
T Consensus 138 ~~~~l~s~s~d-----g~i~~wd~~~~~~~~ 163 (343)
T 3lrv_A 138 NTEYFIWADNR-----GTIGFQSYEDDSQYI 163 (343)
T ss_dssp -CCEEEEEETT-----CCEEEEESSSSCEEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcEEE
Confidence 45566667754 468888988776543
No 132
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.53 E-value=74 Score=21.23 Aligned_cols=54 Identities=7% Similarity=0.025 Sum_probs=30.9
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+..||..+.+-.............+++.. ++.+++.|+.+ ..+..||+.+.+-
T Consensus 150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-----g~i~iwd~~~~~~ 204 (343)
T 3lrv_A 150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD-----GILDVYNLSSPDQ 204 (343)
T ss_dssp CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT-----SCEEEEESSCTTS
T ss_pred cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCCC
Confidence 467888887766443222222112223333 56777777754 4688889887753
No 133
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=42.37 E-value=76 Score=21.38 Aligned_cols=52 Identities=8% Similarity=-0.012 Sum_probs=26.7
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+..||..+.+....-.. ....-.+++.. ++ +++.++.+ ..+..||+.+.+-
T Consensus 270 ~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~ 322 (425)
T 1r5m_A 270 TLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-KVISCSMD-----GSVRLWSLKQNTL 322 (425)
T ss_dssp CEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-EEEEEETT-----SEEEEEETTTTEE
T ss_pred EEEEEECCCCccceEecC-CCccEEEEEECCCC-EEEEEeCC-----CcEEEEECCCCcE
Confidence 466788766543222110 11112233333 45 55666643 5788899877653
No 134
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=41.71 E-value=78 Score=21.29 Aligned_cols=65 Identities=9% Similarity=-0.073 Sum_probs=35.2
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCC-CCCccCeEEEEeCCCCceeeCCCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRD-DSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
..++.+|..+.+-..+...+ ....+....- ++..+++.... .......++.+|+.....+.+...
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 234 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQEN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH 234 (388)
T ss_dssp EEEEEEETTTCCEEEEEEES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC
T ss_pred ceEEEEECCCCceEEeecCC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC
Confidence 67999999988766554211 1111222222 34433333222 122246889999988777776543
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=41.69 E-value=73 Score=20.96 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=33.0
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEE-C-CEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-N-NVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
...++++|+.+.+-...-+ .....+.++.. + +.+|+.+..+ ..+..+|+.+.+-
T Consensus 68 ~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~ 123 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIH--NDLKPFGATINNTTQTLWFGNTVN-----SAVTAIDAKTGEV 123 (353)
T ss_dssp SEEEEEECTTTCCEEEEEE--ESSCCCSEEEETTTTEEEEEETTT-----TEEEEEETTTCCE
T ss_pred CccEEEEcCCCCeEEEEEe--cCCCcceEEECCCCCEEEEEecCC-----CEEEEEeCCCCee
Confidence 4679999998876543322 12222334443 3 4688776532 4789999988864
No 136
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=40.54 E-value=78 Score=22.00 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=31.8
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEE-CCE--EEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNV--IYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~--iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
.++++++|..+.+-.+ .++.+...++++.. +++ +|+.... .+.+.++|+.+.+=.
T Consensus 297 ~~~V~VID~~t~~vv~--~i~~g~~p~~i~~s~Dg~~~l~v~~~~-----~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 297 AKEVTSVTGLVGQTSS--QISLGHDVDAISVAQDGGPDLYALSAG-----TEVLHIYDAGAGDQD 354 (373)
T ss_pred CCeEEEEECCCCEEEE--EEECCCCcCeEEECCCCCeEEEEEcCC-----CCeEEEEECCCCCEE
Confidence 3579999998876522 22333333444443 443 5554321 268999999887643
No 137
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=40.49 E-value=84 Score=21.32 Aligned_cols=53 Identities=6% Similarity=0.132 Sum_probs=26.2
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE---CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF---NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+..||..+.+-...-..........++.+ ++.+++.|+.+ ..+..||+.+.+
T Consensus 193 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~~~~~ 248 (344)
T 4gqb_B 193 RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDTKSTS 248 (344)
T ss_dssp CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT-----SEEEEEESCC--
T ss_pred ccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC-----CcEEEEECCCCc
Confidence 466788887665332211222111222222 45677777753 467778877654
No 138
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=40.09 E-value=75 Score=20.60 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=35.2
Q ss_pred ecEEEEEeCCCCceeecCCCc---ccccceEEEEE-C-CEEEEEecCCCCCccCeEEEEeCCCCceeeC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMS---TRRKHLGCAVF-N-NVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p---~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
...+.+||+.++++..+.... ......+++.. + +.||+.... ..+.+||+. ++...+
T Consensus 45 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~~~d~~-g~~~~~ 106 (314)
T 1pjx_A 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD-GTFEEI 106 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT-SCEEEC
T ss_pred CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEEEEeCC-CCEEEE
Confidence 356899999888886653210 11122333333 4 688886541 368899998 777665
No 139
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=39.79 E-value=55 Score=19.60 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=16.8
Q ss_pred eecEEEEEeCCCCceeecCC
Q psy14436 14 LQVSVERFDPKLNRWTAMAP 33 (133)
Q Consensus 14 ~~~~~~~yd~~t~~W~~~~~ 33 (133)
.-..|..||+.+.+|..+..
T Consensus 16 ~rA~Vm~~Dd~tk~WlP~gg 35 (130)
T 3syx_A 16 VRAVVMTRDDSSGGWLPLGG 35 (130)
T ss_dssp EEEEEEEECSSSSCEEESSS
T ss_pred EEEEeeeEcCCCCceEeCCC
Confidence 45789999999999988764
No 140
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=39.15 E-value=77 Score=20.47 Aligned_cols=52 Identities=10% Similarity=0.212 Sum_probs=25.7
Q ss_pred EEEEEeCCCC--ceeecCCCcccccceEEEEE----CCEEEEEecCCCCCccCeEEEEeCCCC
Q psy14436 17 SVERFDPKLN--RWTAMAPMSTRRKHLGCAVF----NNVIYAVGGRDDSMELSSAEKYNPHTN 73 (133)
Q Consensus 17 ~~~~yd~~t~--~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~ 73 (133)
.+..||..+. .+..+..+.........+.+ ++.+++.|+.+ ..+..||+.+.
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d-----g~v~vwd~~~~ 91 (351)
T 3f3f_A 34 HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD-----KTVKLWEEDPD 91 (351)
T ss_dssp EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEECTT
T ss_pred eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC-----CeEEEEecCCC
Confidence 4556666543 33333322222222233333 26677777754 35677777654
No 141
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=37.70 E-value=24 Score=23.12 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=16.8
Q ss_pred eeecEEEEEeCCCCceeecC
Q psy14436 13 QLQVSVERFDPKLNRWTAMA 32 (133)
Q Consensus 13 ~~~~~~~~yd~~t~~W~~~~ 32 (133)
.+...+|.||..+++|.+..
T Consensus 41 t~hasvYkfd~~~~eW~K~~ 60 (231)
T 1q67_A 41 TPHASLYKWDFKKDEWNKLE 60 (231)
T ss_dssp EEEEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEecCCCCceEecC
Confidence 35678999999999998864
No 142
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=37.61 E-value=95 Score=21.10 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=27.8
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE-CCE-EEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNV-IYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+..||..+.+-...-.......-.+++.. ++. +++.|+.+ ..+..||+.+.+
T Consensus 270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~~ 324 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN-----GMLAQWDLRSPE 324 (420)
T ss_dssp CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCTT
T ss_pred eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC-----CeEEEEEcCCCc
Confidence 477899877653222111111111222222 333 66667643 578889988764
No 143
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=37.14 E-value=27 Score=20.98 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=15.8
Q ss_pred eecEEEEEeCCCCceeecC
Q psy14436 14 LQVSVERFDPKLNRWTAMA 32 (133)
Q Consensus 14 ~~~~~~~yd~~t~~W~~~~ 32 (133)
....+|.||..+++|.+..
T Consensus 36 ~~v~vY~f~~~~~~W~K~~ 54 (134)
T 2lyd_A 36 SHVAFYTFNSSQNEWEKTD 54 (134)
T ss_dssp EEEEEEEEETTTTEEEEEE
T ss_pred CeEEEEEecCCcCceeEcC
Confidence 4577899999999998863
No 144
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=36.89 E-value=1.1e+02 Score=22.99 Aligned_cols=51 Identities=10% Similarity=0.206 Sum_probs=26.7
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+.+||..+.+-... +..+......+.+ ++.+++.|+.+ ..+..+|+.+.+
T Consensus 542 ~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg~~l~sg~~D-----g~i~iwd~~~~~ 594 (694)
T 3dm0_A 542 TVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGSLCASGGKD-----GVVLLWDLAEGK 594 (694)
T ss_dssp CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SBCEEEETTTTE
T ss_pred eEEEEECCCCcEEEE--EcCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCc
Confidence 456777766544321 1111212222233 46677777754 457777887764
No 145
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=36.79 E-value=53 Score=18.41 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=16.1
Q ss_pred EEEeCCCCceeecCCCcccccceEEEEECCEEEEE
Q psy14436 19 ERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAV 53 (133)
Q Consensus 19 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 53 (133)
+.||..|++... | ...+...+.+...++.||+.
T Consensus 68 ~~Fd~~tG~~~~-p-~~~~L~~~~v~~~~g~v~v~ 100 (111)
T 1vm9_A 68 WTFNDGTGHGIN-P-DDAALAEYPVEVKGDDIYVS 100 (111)
T ss_dssp CEEETTTCBBSS-S-SSCBCCEECEEEETTEEEEC
T ss_pred CEEeCCCccCCC-C-CcCCcCEEEEEEECCEEEEe
Confidence 467777666544 2 11222223344456666653
No 146
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=35.93 E-value=1.1e+02 Score=21.18 Aligned_cols=52 Identities=4% Similarity=-0.092 Sum_probs=27.1
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
.+..||..+.+-...-.. ......++.. ++.+++..|... ..+..||..+.+
T Consensus 302 ~I~iwd~~t~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d----~~I~iwd~~~~~ 355 (420)
T 4gga_A 302 HIRIWNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMA 355 (420)
T ss_dssp EEEEEETTTTEEEEEEEC--SSCEEEEEEETTTTEEEEEECTTT----CCEEEEETTTCC
T ss_pred EEEEEeCCccccceeecc--ccceeeeeecCCCCeEEEEEecCC----CEEEEEECCCCc
Confidence 467788887765433221 1111222222 346665555432 458888887654
No 147
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=35.30 E-value=1.4e+02 Score=22.47 Aligned_cols=79 Identities=10% Similarity=0.006 Sum_probs=43.4
Q ss_pred cEEEEEeC-CCCc--eeecCCCccc--------ccceEEEE--ECCE----EEEEecCCCCCccCeEEEEeCCCCc--ee
Q psy14436 16 VSVERFDP-KLNR--WTAMAPMSTR--------RKHLGCAV--FNNV----IYAVGGRDDSMELSSAEKYNPHTNT--WL 76 (133)
Q Consensus 16 ~~~~~yd~-~t~~--W~~~~~~p~~--------r~~~~~~~--~~~~----iyv~GG~~~~~~~~~~~~yd~~~~~--W~ 76 (133)
..++++|. .+.+ |+.-...+.. ....+.++ .++. ||+... ...+.++|..+++ |+
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------dg~l~AlDa~TG~~~W~ 146 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------DGNVAALNAETGETVWK 146 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT------TSEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC------CCEEEEEECCCCCEEEe
Confidence 46899999 7764 8664432211 11223445 4666 776422 2578999998875 87
Q ss_pred eCCCCCCc--ccceeeEEeCCeeeee
Q psy14436 77 PIVAMTSR--RSGLGPGSLQLTLPTL 100 (133)
Q Consensus 77 ~~~~~~~~--r~~~~~~~~~~~iy~~ 100 (133)
.-..-+.. ....+.++.++++|+-
T Consensus 147 ~~~~~~~~~~~~~ssP~v~~g~V~vg 172 (599)
T 1w6s_A 147 VENSDIKVGSTLTIAPYVVKDKVIIG 172 (599)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEEC
T ss_pred ecCCCCCccceeecCCEEECCEEEEE
Confidence 53211111 1223445678888553
No 148
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=35.16 E-value=1e+02 Score=20.70 Aligned_cols=66 Identities=6% Similarity=-0.095 Sum_probs=34.2
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
...++.+|..+.....+............+.. ++ .|+...... ......++.+|+.+++-+.+..+
T Consensus 215 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~ 282 (388)
T 3pe7_A 215 DARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLK-GSPDRFIYSADPETLENRQLTSM 282 (388)
T ss_dssp SCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEET-TCCCEEEEEECTTTCCEEEEEEE
T ss_pred cceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCC-CCCcceEEEEecCCCceEEEEcC
Confidence 45788888877766665432211111111221 44 354433221 11123599999999886666443
No 149
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=35.06 E-value=1.5e+02 Score=22.61 Aligned_cols=55 Identities=5% Similarity=0.044 Sum_probs=33.8
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCceeeC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
+-+.+||+.++++....... ...-..++..++.|++... ..+.+||+.+++.+.+
T Consensus 82 ~Gl~~yd~~~~~f~~~~~~~-~~~i~~i~~~~g~lWigt~-------~Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 82 NGILVYNYRADRYEQPETDF-PTDVRTMALQGDTLWLGAL-------NGLYTYQLQSRKLTSF 136 (758)
T ss_dssp TEEEEEETTTTEECCCSCCC-CSCEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEE
T ss_pred CCeEEEeCCCCEEECcccCC-CceEEEEEecCCcEEEEcC-------CcceeEeCCCCeEEEe
Confidence 45789999998876521111 1111223345778887421 3688999998888765
No 150
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=34.68 E-value=61 Score=17.98 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=19.8
Q ss_pred EEEeCCCCceeecCCCcccccceEEEEECCEEEEE
Q psy14436 19 ERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAV 53 (133)
Q Consensus 19 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 53 (133)
+.||+.+++....|. +.+...+.+...++.|||-
T Consensus 66 ~~Fdl~~G~~~~~P~-~~~L~~~~v~~~~g~v~v~ 99 (106)
T 3dqy_A 66 GKFCVRTGKVKALPA-CKPIKVFPIKVEGDEVHVD 99 (106)
T ss_dssp CEEETTTCCEEETTC-CSCCCEECEEEETTEEEEC
T ss_pred CEEeCCCCCEeCCCC-CCCccEEEEEEECCEEEEE
Confidence 578877777766543 1223334455567777763
No 151
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=34.56 E-value=1.5e+02 Score=22.37 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=36.0
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCc---eeeCCC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNT---WLPIVA 80 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~ 80 (133)
.++++.+|..+.++..+..... .....+..++.+|+....+ .....+..+|+.+.. |+.+.+
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~~--~~~~~~~~~g~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~ 315 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGVG--AKYEVHAWKDRFYVLTDEG--APRQRVFEVDPAKPARASWKEIVP 315 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECSS--CCEEEEEETTEEEEEECTT--CTTCEEEEEBTTBCSGGGCEEEEC
T ss_pred ceEEEEEcCCCCceEEeecCCC--ceEEEEecCCcEEEEECCC--CCCCEEEEEeCCCCCccCCeEEec
Confidence 4577888777777777653221 1222333566666554322 234678899987654 877643
No 152
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=34.16 E-value=1.1e+02 Score=20.87 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=33.5
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCceeeC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 78 (133)
.++++.+|..+.+- +..++.+. ..+++.. +..||+.++ ..+.+||+.+.+-+.+
T Consensus 285 ~~~v~viD~~t~~~--v~~i~~~~-p~~ia~spdg~~l~v~n~-------~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 285 AAEIWVMDTKTKQR--VARIPGRD-ALSMTIDQQRNLMLTLDG-------GNVNVYDISQPEPKLL 340 (361)
T ss_dssp CSEEEEEETTTTEE--EEEEECTT-CCEEEEETTTTEEEEECS-------SCEEEEECSSSSCEEE
T ss_pred CceEEEEECCCCcE--EEEEecCC-eeEEEECCCCCEEEEeCC-------CeEEEEECCCCcceee
Confidence 35799999988754 33334444 4555554 347776532 6788999988733443
No 153
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=33.63 E-value=95 Score=19.94 Aligned_cols=24 Identities=8% Similarity=-0.067 Sum_probs=14.8
Q ss_pred CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 47 NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 47 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
++.+++..|.. -..+..||..+.+
T Consensus 252 ~~~~~~~sg~~----d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 252 YKELISGHGFA----QNQLVIWKYPTMA 275 (318)
T ss_dssp TTEEEEEECTT----TCCEEEEETTTCC
T ss_pred ccceEEEEEcC----CCEEEEEECCCCc
Confidence 34666555542 2468888987765
No 154
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=33.57 E-value=66 Score=18.07 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=19.6
Q ss_pred EEEeCCCCceeecCCCcccccceEEEEECCEEEEE
Q psy14436 19 ERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAV 53 (133)
Q Consensus 19 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 53 (133)
+.||.++++....|. .+...+.+...++.|||.
T Consensus 78 ~~Fd~~tG~~~~~P~--~~l~~~~v~v~~g~V~v~ 110 (113)
T 2jo6_A 78 QRFRLSDGLCMEDEQ--FSVKHYEARVKDGVVQLR 110 (113)
T ss_dssp EEEETTTTEETTTTT--TCCCEEEEEEETTEEEEE
T ss_pred CEEeCCCccCCCCCc--ccccEEeEEEECCEEEEE
Confidence 568888877665543 222334455567777763
No 155
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=33.39 E-value=95 Score=20.21 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=14.8
Q ss_pred CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 47 NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 47 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
++.+++.|+.+ ..+..||+.+.+
T Consensus 226 ~~~~l~s~s~D-----g~i~iwd~~~~~ 248 (340)
T 4aow_A 226 DGSLCASGGKD-----GQAMLWDLNEGK 248 (340)
T ss_dssp TSSEEEEEETT-----CEEEEEETTTTE
T ss_pred CCCEEEEEeCC-----CeEEEEEeccCc
Confidence 45666777754 457777777654
No 156
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=33.38 E-value=1.5e+02 Score=22.19 Aligned_cols=62 Identities=8% Similarity=0.038 Sum_probs=34.5
Q ss_pred ecEEEEEeCCCCceeecCCCcccc---cceEEEE-ECCEEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRR---KHLGCAV-FNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r---~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
..+++.+|..+.+...+....... .....+. -++++++.+..++ ...++.+|+... ...+..
T Consensus 311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~~ 376 (741)
T 2ecf_A 311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALTH 376 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEESCC
T ss_pred eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeeee
Confidence 467889999888776553211110 0012222 2566665554332 357888887666 666654
No 157
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=33.20 E-value=96 Score=19.86 Aligned_cols=82 Identities=15% Similarity=0.057 Sum_probs=39.1
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCCCCCcccceeeEE-e
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGS-L 93 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~ 93 (133)
+.+.+||+.......+..........+++.. ++.||+.... ...+.+||+.......+..-.....-.+++. -
T Consensus 142 ~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~ 216 (286)
T 1q7f_A 142 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINS 216 (286)
T ss_dssp TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTSCSEEEEEECT
T ss_pred CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCccCCCcEEEECC
Confidence 4577888755433333211111112233333 4788887542 3678999986654444432110011112222 2
Q ss_pred CCeeeeecC
Q psy14436 94 QLTLPTLTS 102 (133)
Q Consensus 94 ~~~iy~~gG 102 (133)
++++|+.+.
T Consensus 217 ~G~l~v~~~ 225 (286)
T 1q7f_A 217 NGEILIADN 225 (286)
T ss_dssp TCCEEEEEC
T ss_pred CCCEEEEeC
Confidence 567777663
No 158
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=32.62 E-value=1.5e+02 Score=22.02 Aligned_cols=62 Identities=8% Similarity=-0.119 Sum_probs=34.0
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEE--CC-EEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
...+|.+|........+..-.... .....+ ++ .||+.+..+ ......++.+|+.+.+.+.+.
T Consensus 334 ~~~l~~~~~~~~~~~~l~~~~~~v--~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVTKGEWEV--TNFAGFDPKGTRLYFESTEA-SPLERHFYCIDIKGGKTKDLT 398 (706)
T ss_dssp SCEEEEEETTSCEEEECCCSSSCE--EEEEEECTTSSEEEEEESSS-CTTCBEEEEEETTCCCCEESC
T ss_pred ccEEEEEECCCCEEEecCCCCeEE--EeeeEEcCCCCEEEEEecCC-CCceEEEEEEEcCCCCceecc
Confidence 356788886666565554321111 121233 33 566655432 222357888999888776665
No 159
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=32.32 E-value=1.2e+02 Score=20.84 Aligned_cols=61 Identities=5% Similarity=-0.001 Sum_probs=34.0
Q ss_pred EEEEeCCC--CceeecCCCcccccceEEEEE---CCEEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 18 VERFDPKL--NRWTAMAPMSTRRKHLGCAVF---NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 18 ~~~yd~~t--~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
++.++... .+|....+.+....-++++.. .+.||+.+.... .-..+.+.+-...+|+++..
T Consensus 33 l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~--~g~gl~~s~D~G~tW~~~~~ 98 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGH--LGPTVFRSDDGGGNWTEATR 98 (394)
T ss_dssp EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSB
T ss_pred eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCC--CCccEEEeCCCCCCceECCc
Confidence 56666654 689876421122222344443 457887653211 11257777777889998863
No 160
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=31.21 E-value=1.1e+02 Score=19.93 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=36.7
Q ss_pred EEEEeCCCC-ceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCC-CCceeeCCCCCCcccceeeEEe-C
Q psy14436 18 VERFDPKLN-RWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPH-TNTWLPIVAMTSRRSGLGPGSL-Q 94 (133)
Q Consensus 18 ~~~yd~~t~-~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~r~~~~~~~~-~ 94 (133)
+++||+... .|.... +.... ...+..++.||+.. . ...+.+||+. ...|+...+.+. ..+.+.. +
T Consensus 80 l~~~d~~g~~~~~~~~--~~~~~-~~~~~~~~~l~v~t-~-----~~~l~~~d~~g~~~~~~~~~~~~---~~~~~~~~~ 147 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDT--KKAIV-SDFTIFEDILYVTS-M-----DGHLYAINTDGTEKWRFKTKKAI---YATPIVSED 147 (330)
T ss_dssp EEEECCCGGGGGGSCC--------CCEEEETTEEEEEC-T-----TSEEEEECTTSCEEEEEECSSCC---CSCCEECTT
T ss_pred EEEECCCCcEEEEEEC--CCCcc-cCceEECCEEEEEe-c-----CCEEEEEcCCCCEEEEEcCCCce---eeeeEEcCC
Confidence 889987332 243221 11111 12233488888742 1 2468888887 334654322211 1223333 5
Q ss_pred CeeeeecCceEEEEe
Q psy14436 95 LTLPTLTSVKFTYII 109 (133)
Q Consensus 95 ~~iy~~gG~~~~~v~ 109 (133)
+.+++-.....++.+
T Consensus 148 g~l~vgt~~~~l~~~ 162 (330)
T 3hxj_A 148 GTIYVGSNDNYLYAI 162 (330)
T ss_dssp SCEEEECTTSEEEEE
T ss_pred CEEEEEcCCCEEEEE
Confidence 666554432333444
No 161
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=30.82 E-value=95 Score=23.17 Aligned_cols=48 Identities=6% Similarity=0.028 Sum_probs=29.0
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPH 71 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 71 (133)
+++.++|..+++-... ++.....|.++.. +..+|+.+. ...+..+|+.
T Consensus 177 ~~V~viD~~t~~v~~~--i~~g~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~ 226 (567)
T 1qks_A 177 GQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRYLFVIGR------DGKVNMIDLW 226 (567)
T ss_dssp TEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEEET------TSEEEEEETT
T ss_pred CeEEEEECCCCeEEEE--EeCCCCccceEECCCCCEEEEEcC------CCeEEEEECC
Confidence 5889999988765432 2233333444443 347777542 2479999985
No 162
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=30.40 E-value=1.3e+02 Score=20.47 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=27.5
Q ss_pred cEEEEEeCCCCce-eecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 16 VSVERFDPKLNRW-TAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 16 ~~~~~yd~~t~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
..+..||..+.+- .....+........++.. +..|++.|+.+ ..+..||..+.+
T Consensus 245 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d-----g~i~i~d~~~~~ 301 (402)
T 2aq5_A 245 RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD-----SSIRYFEITSEA 301 (402)
T ss_dssp EEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC-----SCEEEEEECSST
T ss_pred ceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC-----CeEEEEEecCCC
Confidence 4677888876442 111111122222233333 34666666533 467788887765
No 163
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=30.32 E-value=1.4e+02 Score=20.80 Aligned_cols=59 Identities=8% Similarity=-0.025 Sum_probs=33.8
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
..++.+|..+.+...+...+. ......+ ++..+++++... ....++.+|+.+.+-.++.
T Consensus 247 ~~i~~~d~~~~~~~~l~~~~~---~~~~~~~spdg~~l~~~s~~~--g~~~i~~~d~~~~~~~~l~ 307 (415)
T 2hqs_A 247 LNLYVMDLASGQIRQVTDGRS---NNTEPTWFPDSQNLAFTSDQA--GRPQVYKVNINGGAPQRIT 307 (415)
T ss_dssp CEEEEEETTTCCEEECCCCSS---CEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSCCEECC
T ss_pred ceEEEEECCCCCEEeCcCCCC---cccceEECCCCCEEEEEECCC--CCcEEEEEECCCCCEEEEe
Confidence 468999998887766643221 1222233 454344443211 2357889999888765554
No 164
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=30.26 E-value=1e+02 Score=19.30 Aligned_cols=59 Identities=14% Similarity=0.004 Sum_probs=32.2
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCceeeCCC
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA 80 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 80 (133)
.+|.+|..+.....+...+... ..++.. ++ .|++.+..+ ....++.+++.......+..
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~~~~~~~---~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 154 DIYSMDIDSGVETRLTHGEGRN--DGPDYSPDGRWIYFNSSRT---GQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp EEEEEETTTCCEEECCCSSSCE--EEEEECTTSSEEEEEECTT---SSCEEEEEETTSSCEEECCC
T ss_pred EEEEEECCCCcceEcccCCCcc--ccceECCCCCEEEEEecCC---CCccEEEECCCCCCcEEEec
Confidence 6777778777766654322211 122222 44 454443322 23578888877777776654
No 165
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=30.12 E-value=49 Score=18.95 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=21.4
Q ss_pred EEEeCCCCceeecCCCcccccceEEEEECCEEEEEec
Q psy14436 19 ERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGG 55 (133)
Q Consensus 19 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 55 (133)
+.||.++++....|. .+...+.+..-++.||+.-+
T Consensus 76 ~~Fdl~tG~~~~~P~--~~l~~~~v~v~~g~V~v~~~ 110 (119)
T 3c0d_A 76 QHFSLKSGQCLEDEA--HCLKTWRVTVDDNQVCYLAK 110 (119)
T ss_dssp CEEETTTCBBSSCTT--CBCCEECEEESSSEEEEECC
T ss_pred CEEECCCCcCCCCCC--ceeeEEEEEEECCEEEEEeC
Confidence 578888887766543 22233444555778887644
No 166
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=29.99 E-value=1.8e+02 Score=21.94 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=37.3
Q ss_pred ecEEEEEeCCC------C--ceeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCC---ceeeCCC
Q psy14436 15 QVSVERFDPKL------N--RWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTN---TWLPIVA 80 (133)
Q Consensus 15 ~~~~~~yd~~t------~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~ 80 (133)
.++++.+|..+ . .+..+....... .......++.||+....+. ....+..+|+.+. .|+.+.+
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~ 331 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLVP 331 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEEC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCcccceeccC
Confidence 46788888865 3 466654322111 1222234678888765432 2467888998775 4887743
No 167
>2ot9_A Hypothetical protein; YAEQ protein, PSI-2, protein structure initiative, MCSG, structural genomics, midwest center for S genomics; HET: SRT; 1.97A {Pseudomonas syringae PV} SCOP: c.52.1.33
Probab=29.40 E-value=12 Score=23.88 Aligned_cols=100 Identities=9% Similarity=0.010 Sum_probs=59.2
Q ss_pred eecccccCCeeecEEEEEeCC--CCceeecCCCcccccceEEEEEC-CEEEEEecCC---------CCCccCeEEEEeCC
Q psy14436 4 DFNHGYRELQLQVSVERFDPK--LNRWTAMAPMSTRRKHLGCAVFN-NVIYAVGGRD---------DSMELSSAEKYNPH 71 (133)
Q Consensus 4 ~~~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~---------~~~~~~~~~~yd~~ 71 (133)
-|+-|.+... -.++|.=|+. ...|..+..+...|..-++--.+ =.||.+| .. .-....++.++.+.
T Consensus 56 ~FtkGLs~~d-EPdlW~k~l~g~i~lWIevG~Pde~rl~KA~~ra~~V~vy~yg-~~~vWw~~~~~kl~r~~nl~V~~l~ 133 (180)
T 2ot9_A 56 AFGRGLSDVD-EPALWEKSLDDRVLHWIEVGQPDADRLTWCSRRTERTSLLAYG-SLRVWEGKVIPAIKNLKNVNIAAVP 133 (180)
T ss_dssp EECCGGGCTT-SCSEEEECTTSCEEEEEEESCCCHHHHHHHHTTEEEEEEEECS-CCHHHHHHHGGGCTTCSSEEEEECC
T ss_pred cccCCCCCCC-CchhhhcCCCCCEEEEEEcCCCCHHHHHHhhccCCeEEEEEcC-CcHHHHHHhHHHhhccCCcEEEEcC
Confidence 3555555433 4567776663 35699988544433221111111 1467776 32 12234567888777
Q ss_pred CCceeeCCCCCCcccceeeEEeCCeeeeecCceE
Q psy14436 72 TNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSVKF 105 (133)
Q Consensus 72 ~~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~ 105 (133)
...-..+..+-..+....+.+-+|.+|+-.+...
T Consensus 134 ~~~~~~La~l~~R~m~lqvtIqdg~~~ls~~~~~ 167 (180)
T 2ot9_A 134 QDVLEVLAKDMPRVIKWDVMISEGTVFVTDDRGQ 167 (180)
T ss_dssp HHHHHHHHTTCCSEEEEEEEEETTEEEEEETTEE
T ss_pred HHHHHHHHHHhhccceEEEEEECCEEEEEeCCce
Confidence 7766777777777778888888999966544433
No 168
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=28.97 E-value=1.2e+02 Score=19.72 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=31.3
Q ss_pred EEEEEeCCCCc----eeecCCCcccccceEEEEE-CCE-EEEEecCCCCCccCeEEEEeC-CCCceeeCCC
Q psy14436 17 SVERFDPKLNR----WTAMAPMSTRRKHLGCAVF-NNV-IYAVGGRDDSMELSSAEKYNP-HTNTWLPIVA 80 (133)
Q Consensus 17 ~~~~yd~~t~~----W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~-~~~~W~~~~~ 80 (133)
.+..||..+.. ..... .....-.+++.. ++. +++.|+.+ ..+..||+ .+.+-..+..
T Consensus 34 ~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~ 97 (342)
T 1yfq_A 34 SLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQ-----GEILKVDLIGSPSFQALTN 97 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETT-----SCEEEECSSSSSSEEECBS
T ss_pred eEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCC-----CeEEEEEeccCCceEeccc
Confidence 46677776655 22221 111112233332 566 66677753 46888999 8887666654
No 169
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=28.69 E-value=16 Score=21.81 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=9.7
Q ss_pred eecEEEEEeCCCCceeecC
Q psy14436 14 LQVSVERFDPKLNRWTAMA 32 (133)
Q Consensus 14 ~~~~~~~yd~~t~~W~~~~ 32 (133)
....+|.||+.+++|.+..
T Consensus 31 ~~v~vY~f~~~~~~W~K~~ 49 (127)
T 2qkl_A 31 SHVAVYQFDVGSQKWLKTS 49 (127)
T ss_dssp EEEEEECC------CCEEE
T ss_pred CeEEEEEecCCCCceEEcC
Confidence 4567888999999998863
No 170
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=28.17 E-value=2e+02 Score=21.89 Aligned_cols=63 Identities=13% Similarity=0.029 Sum_probs=38.6
Q ss_pred ecEEEEEeCCCC--c-eeecCCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCC--CceeeCCC
Q psy14436 15 QVSVERFDPKLN--R-WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHT--NTWLPIVA 80 (133)
Q Consensus 15 ~~~~~~yd~~t~--~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~ 80 (133)
.++++.+|..+. + +..+........ ..+...++.||+....+ .....+..+|+.+ ..|+.+-+
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQW-DFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCE-EEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEEC
T ss_pred cceEEEEECCCCCCcccEEecCCCCceE-EEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEec
Confidence 568899998776 6 777653222221 12223466787765432 2246788999887 57887753
No 171
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=28.13 E-value=89 Score=17.88 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=24.2
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEEECCEEEEEec
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGG 55 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 55 (133)
.-+.||+.+++....|.. .+...+.+...++.|||.-.
T Consensus 75 Hg~~Fdl~tG~~~~~P~~-~~L~~~~v~v~~g~V~v~~~ 112 (121)
T 3gce_A 75 HVGRFDVRTGAPTALPCV-LPVRAYDVVVDGTEILVAPK 112 (121)
T ss_dssp TCCEEETTTCCEEETTCC-SCCCBCCEEEETTEEEECCC
T ss_pred CCCEEcCCCccEeCCCCc-CCcceEEEEEECCEEEEEEC
Confidence 346799888888776542 23333456667888887533
No 172
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.99 E-value=1.4e+02 Score=20.22 Aligned_cols=24 Identities=4% Similarity=0.048 Sum_probs=16.2
Q ss_pred CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 47 NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 47 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
++.+++.|+.+ ..+..||+.+.+-
T Consensus 309 ~g~~l~~g~~d-----g~i~vwd~~~~~~ 332 (380)
T 3iz6_a 309 SGRLLFAGYSN-----GDCYVWDTLLAEM 332 (380)
T ss_dssp SSSEEEEECTT-----SCEEEEETTTCCE
T ss_pred CCCEEEEEECC-----CCEEEEECCCCce
Confidence 56666666643 4688889877654
No 173
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=27.28 E-value=72 Score=21.00 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=31.9
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
...+++||+.+++...+. ... ...+++.. ++ .||+............+.+||+..+.
T Consensus 168 ~~~v~~~d~~~g~~~~~~--~~~-~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA--DLD-HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp CEEEEEECSSSCCCEEEE--EES-SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred CCeEEEEcCCCCcEEEEe--cCC-CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 367999999888877654 111 11233333 33 58876542111112578888877554
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=27.06 E-value=1.4e+02 Score=19.67 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=33.5
Q ss_pred eecEEEEEeCCCCceeecCCCcccccceEEEEE-CC-EEEEEecCCCCCccCeEEEEeCCCCceeeCCCC
Q psy14436 14 LQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-NN-VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM 81 (133)
Q Consensus 14 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 81 (133)
....++.+|..+.+-..+ .. ....+.. ++ .|+..... .......++.+|+.+++..++...
T Consensus 41 ~~~~l~~~d~~~~~~~~l-----~~-~~~~~~SpDg~~la~~~~~-~~~~~~~l~~~~~~~g~~~~l~~~ 103 (347)
T 2gop_A 41 YENTIVIENLKNNARRFI-----EN-ATMPRISPDGKKIAFMRAN-EEKKVSEIWVADLETLSSKKILEA 103 (347)
T ss_dssp EEEEEEEEETTTCCEEEE-----ES-CEEEEECTTSSEEEEEEEE-TTTTEEEEEEEETTTTEEEEEEEE
T ss_pred ccceEEEEeCCCCceEEc-----cc-CCCeEECCCCCEEEEEEec-cCCCcceEEEEECCCCceEEEEcC
Confidence 467788999988765554 11 1122222 44 44433321 111235688889888877666443
No 175
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=26.79 E-value=92 Score=17.60 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=19.7
Q ss_pred EEEeCCCCceeecCCCcccccceEEEEECCEEEEEec
Q psy14436 19 ERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGG 55 (133)
Q Consensus 19 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 55 (133)
+.||+.+++....|.. .+...+.+...++.||+.-+
T Consensus 70 ~~Fdl~tG~~~~~P~~-~~L~~~~v~~~~g~V~v~~~ 105 (115)
T 2de6_D 70 GAFNVCTGMPASSPCT-VPLGVFEVEVKEGEVYVAGE 105 (115)
T ss_dssp CEEETTTCCEEETTCC-SCCCEEEEEESSSEEEEEEE
T ss_pred CEEcCCCcCEeCCCCc-CCCCEEEEEEECCEEEEecC
Confidence 4678777777665431 22223344445677776543
No 176
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=26.43 E-value=1.3e+02 Score=19.21 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=31.6
Q ss_pred cEEEEEeCCCCceeec---------CCCcccccceEEEEECCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 16 VSVERFDPKLNRWTAM---------APMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~---------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
+..|+||..+++-..- +.+|. +. .++...++.+|.|-| +..++||..+.+=
T Consensus 136 ~~ywr~d~~~~~~d~gyPr~i~~~~~Gip~-~i-DaAf~~~g~~YfFkg-------~~y~rf~~~~~~v 195 (207)
T 1pex_A 136 NQVWRYDDTNHIMDKDYPRLIEEDFPGIGD-KV-DAVYEKNGYIYFFNG-------PIQFEYSIWSNRI 195 (207)
T ss_dssp TEEEEEETTTTEECSSCCCBHHHHSTTSCS-CC-SEEEEETTEEEEEET-------TEEEEEETTTTEE
T ss_pred CEEEEEeCcCccccCCCCccHHHcCCCCCC-Cc-cEEEEcCCcEEEEEC-------CEEEEEeCCccEE
Confidence 6788999876543211 12222 22 233346899999976 5788888877653
No 177
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=26.09 E-value=88 Score=17.13 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=17.3
Q ss_pred EEEeCCCCceeecCCCcccccceEEEEECCEEEE
Q psy14436 19 ERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYA 52 (133)
Q Consensus 19 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv 52 (133)
+.||.++++....|.. .+...+.+...++.||+
T Consensus 68 ~~Fd~~~G~~~~~P~~-~~L~~~~v~~~~g~v~v 100 (103)
T 2qpz_A 68 GRFDVCTGKALCAPVT-QNIKTYPVKIENLRVMI 100 (103)
T ss_dssp CEEETTTCCEEETTCC-SCCCEECEEEETTEEEE
T ss_pred CEEeCCCCCEeCCCCC-CCCCEEeEEEECCEEEE
Confidence 4677777776655432 12222334445666665
No 178
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=24.74 E-value=71 Score=18.84 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=15.8
Q ss_pred eecEEEEEeCCCCceeecC
Q psy14436 14 LQVSVERFDPKLNRWTAMA 32 (133)
Q Consensus 14 ~~~~~~~yd~~t~~W~~~~ 32 (133)
....++.||+.+.+|....
T Consensus 9 ~~A~V~~~d~~~~~W~~~g 27 (130)
T 1qc6_A 9 ARASVMVYDDTSKKWVPIK 27 (130)
T ss_dssp EEEEEEEEETTTTEEEECC
T ss_pred EEEEEEEECCCCCceeECC
Confidence 3578899999999998765
No 179
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=24.65 E-value=45 Score=17.55 Aligned_cols=16 Identities=6% Similarity=0.164 Sum_probs=12.6
Q ss_pred cEEEEEeCCCCceeec
Q psy14436 16 VSVERFDPKLNRWTAM 31 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~ 31 (133)
=.++.||+.+++-+-+
T Consensus 40 iKIykyde~tNeI~Lk 55 (72)
T 3kvp_A 40 IKIYEYNESRNEVKLK 55 (72)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCeEEEE
Confidence 4688999999987554
No 180
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=24.10 E-value=1e+02 Score=17.09 Aligned_cols=34 Identities=12% Similarity=-0.007 Sum_probs=17.2
Q ss_pred EEEeCCCCceeecCCCcccccceEEEEECCEEEEE
Q psy14436 19 ERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAV 53 (133)
Q Consensus 19 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 53 (133)
+.||+.+++....|.. .+...+.+...++.||+-
T Consensus 69 ~~Fdl~tG~~~~~P~~-~~L~~~~v~~~~g~v~v~ 102 (108)
T 2i7f_A 69 GSFDIATGAAKAFPCQ-IPIKTYPVTIEDGWVCID 102 (108)
T ss_dssp CEEETTTCCBCSTTCC-SCCCEECEEEETTEEEEE
T ss_pred CEEeCCCcCEeCCCCC-CCccEEeEEEECCEEEEe
Confidence 4677767666554321 122223344456666653
No 181
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=23.97 E-value=2.9e+02 Score=22.32 Aligned_cols=57 Identities=11% Similarity=0.048 Sum_probs=29.2
Q ss_pred EEEEEeCCCCceeecCCCcccccceEEEE-ECCEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAV-FNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
.+..||..+.+......-..... .+++. -++..++.++.+ ..+..||..+++...+.
T Consensus 984 ~i~i~d~~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~ 1041 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGVGHKKAV-RHIQFTADGKTLISSSED-----SVIQVWNWQTGDYVFLQ 1041 (1249)
T ss_dssp CCEEEETTTTSCEEECCCCSSCC-CCEEECSSSSCEEEECSS-----SBEEEEETTTTEEECCB
T ss_pred CEEEEEcCCCceeeecccCCCce-EEEEECCCCCEEEEEcCC-----CEEEEEECCCCceEEEe
Confidence 45677776655433211111111 12222 245566666643 46888888888765543
No 182
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=23.11 E-value=1.9e+02 Score=19.84 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCceeecCCCcccccceEEEEE--CCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKHLGCAVF--NNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
..+..||..+.+-...-..+.......++.+ ++.+++.|+.+ ..+..||+.+.+.
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~ 248 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR-----GIIDIWDIRFNVL 248 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT-----SCEEEEETTTTEE
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC-----CeEEEEEcCCccE
Confidence 4678899988665332211112222223333 46677777754 4688889887654
No 183
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=23.10 E-value=75 Score=18.24 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=15.7
Q ss_pred eecEEEEEeCCCCceeecC
Q psy14436 14 LQVSVERFDPKLNRWTAMA 32 (133)
Q Consensus 14 ~~~~~~~yd~~t~~W~~~~ 32 (133)
....|+.+|+.+..|....
T Consensus 9 ~~A~V~~~d~~~~~W~p~~ 27 (112)
T 1evh_A 9 ARAAVMVYDDANKKWVPAG 27 (112)
T ss_dssp EEEEEEEEETTTTEEEEGG
T ss_pred EEEEEEEEcCCCCceEECC
Confidence 3578899999999997765
No 184
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=22.92 E-value=2.3e+02 Score=21.04 Aligned_cols=63 Identities=5% Similarity=-0.117 Sum_probs=33.7
Q ss_pred EEEEEeCCCCceeecCCCcccc--cceEEEE-ECCEEEEEecCCC----CCccCeEEEEeCCCCceeeCC
Q psy14436 17 SVERFDPKLNRWTAMAPMSTRR--KHLGCAV-FNNVIYAVGGRDD----SMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 17 ~~~~yd~~t~~W~~~~~~p~~r--~~~~~~~-~~~~iyv~GG~~~----~~~~~~~~~yd~~~~~W~~~~ 79 (133)
+++.+|..+++-..+-...... .....+. -+++.++++.... ......++.+|+.+.+-+++.
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 107 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD 107 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEecc
Confidence 6888888887654443211110 0122222 2555555554321 112478999999988766564
No 185
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=22.69 E-value=1.8e+02 Score=19.41 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=26.8
Q ss_pred cEEEEEeCCCCceeecCCCcccccc-eEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 16 VSVERFDPKLNRWTAMAPMSTRRKH-LGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 16 ~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
..+..||..+.+-...- ..+... .+++.. ++.+++.|+.+ ..+..||+.+.+
T Consensus 314 ~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~ 367 (408)
T 4a11_B 314 STIAVYTVYSGEQITML--KGHYKTVDCCVFQSNFQELYSGSRD-----CNILAWVPSLYE 367 (408)
T ss_dssp TEEEEEETTTCCEEEEE--CCCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEECC--
T ss_pred CEEEEEECcCCcceeee--ccCCCeEEEEEEcCCCCEEEEECCC-----CeEEEEeCCCCC
Confidence 46778888776543321 111111 223333 45666677754 357777776653
No 186
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=22.62 E-value=97 Score=25.01 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=11.5
Q ss_pred CCEEEEEecCCCCCccCeEEEEeCCCCc
Q psy14436 47 NNVIYAVGGRDDSMELSSAEKYNPHTNT 74 (133)
Q Consensus 47 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 74 (133)
++..++.|+.+ ..+..||..+.+
T Consensus 1096 d~~~l~s~s~d-----~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1096 DATKFSSTSAD-----KTAKIWSFDLLS 1118 (1249)
T ss_dssp SSSSCEEECCS-----SCCCEECSSSSS
T ss_pred CCCEEEEEcCC-----CcEEEEECCCcc
Confidence 34444555432 345566665543
No 187
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=22.50 E-value=85 Score=18.35 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=15.7
Q ss_pred eecEEEEEeCCCC-ceeecCC
Q psy14436 14 LQVSVERFDPKLN-RWTAMAP 33 (133)
Q Consensus 14 ~~~~~~~yd~~t~-~W~~~~~ 33 (133)
....++.||+.+. .|.+...
T Consensus 9 ~rA~V~~~D~~tk~~W~p~g~ 29 (120)
T 1ddw_A 9 TRAHVFQIDPNTKKNWVPTSK 29 (120)
T ss_dssp EEEEEEEECTTTSCSEEESCS
T ss_pred EEEEEEEEcCCCCCceEeCCC
Confidence 3578999999985 9987653
No 188
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=22.40 E-value=1.7e+02 Score=19.08 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=28.4
Q ss_pred EEEEEeCCCCc--eeecCCCcc--cccceEEEE-----ECCEEEEEecCCCCCccCeEEEEeCCCCce
Q psy14436 17 SVERFDPKLNR--WTAMAPMST--RRKHLGCAV-----FNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75 (133)
Q Consensus 17 ~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~-----~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 75 (133)
.+..||..+.+ ...+..... .+...+++. -++.+++.|+.+ ..+..||+.+.+-
T Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMAL 202 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEE
T ss_pred eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEECccCce
Confidence 46788887764 222322111 112222221 356666666643 4788889887764
No 189
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=22.24 E-value=1.5e+02 Score=21.23 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=34.3
Q ss_pred ecEEEEEeCCCCceeecCCCcccccceEEEEE-C-C-EEEEEecCCCCCccCeEEEEeCCCCcee
Q psy14436 15 QVSVERFDPKLNRWTAMAPMSTRRKHLGCAVF-N-N-VIYAVGGRDDSMELSSAEKYNPHTNTWL 76 (133)
Q Consensus 15 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~-~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 76 (133)
.+++.++|..+.+-.+ .+|.+....+++.. + . .+|+.... .+.+.++|+.+.+-.
T Consensus 349 s~~VsVID~~T~kvv~--~I~vg~~P~gia~spDg~~~lyv~n~~-----s~~VsVID~~t~kvv 406 (426)
T 3c75_H 349 SRFVVVLNAETGERIN--KIELGHEIDSINVSQDAEPLLYALSAG-----TQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEEEETTTCCEEE--EEEEEEEECEEEECCSSSCEEEEEETT-----TTEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCeEEE--EEECCCCcCeEEEccCCCEEEEEEcCC-----CCeEEEEECCCCCEE
Confidence 4679999998865433 33444434444443 3 4 57766532 378999999887643
No 190
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=22.12 E-value=1.1e+02 Score=17.01 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=19.7
Q ss_pred EEEeCCCCceeecCCCcccccceEEEEECCEEEEE
Q psy14436 19 ERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAV 53 (133)
Q Consensus 19 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 53 (133)
+.||..+++....|.. .+...+.+...++.||+-
T Consensus 71 ~~Fd~~tG~~~~~P~~-~~L~~~~v~~~~g~v~v~ 104 (112)
T 1fqt_A 71 GKFCVRTGKVKSPPPC-EALKIFPIRIEDNDVLVD 104 (112)
T ss_dssp CEEETTTCCEEESSCC-SCCCBCCEEEETTEEEEC
T ss_pred CEEeCCCCcEeCCCCC-CCccEEEEEEECCEEEEE
Confidence 5788888877665531 122233444567777763
No 191
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A
Probab=22.03 E-value=62 Score=19.79 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.4
Q ss_pred cCeEEEEeCCCCceee
Q psy14436 62 LSSAEKYNPHTNTWLP 77 (133)
Q Consensus 62 ~~~~~~yd~~~~~W~~ 77 (133)
-.++..||+.+++|.-
T Consensus 124 g~~FvsYd~~tG~W~F 139 (148)
T 3pbp_B 124 NSKFESYDADSGTYVF 139 (148)
T ss_dssp SSEEEEECTTTCCEEE
T ss_pred CCEEEEEeCCCcEEEE
Confidence 3678999999999963
No 192
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=21.78 E-value=3.1e+02 Score=21.89 Aligned_cols=57 Identities=11% Similarity=-0.032 Sum_probs=32.8
Q ss_pred cEEE-EEeCCCCceeecCCCcccccceEEEEE-CCEEEEEecCCCCCccCeEEEEeCCCCceeeCC
Q psy14436 16 VSVE-RFDPKLNRWTAMAPMSTRRKHLGCAVF-NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIV 79 (133)
Q Consensus 16 ~~~~-~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 79 (133)
..++ .+|..+.+-..+. ........++.. +++.++++... ..+..+|+.+++-..+.
T Consensus 358 ~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~~-----~~v~~~d~~tg~~~~~~ 416 (1045)
T 1k32_A 358 GDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIE 416 (1045)
T ss_dssp EEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEE
T ss_pred CceEEEEECCCCCceEec--CCccceeeeEECCCCCEEEEECCC-----CeEEEEECCCCceEEec
Confidence 3677 8888887665554 111111222222 45555555432 47889999988766553
No 193
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=21.70 E-value=2.2e+02 Score=21.18 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=35.5
Q ss_pred ecccccCCeeecEEEEEeCCCCceeecCC-CcccccceEEEEECCEEEEEec
Q psy14436 5 FNHGYRELQLQVSVERFDPKLNRWTAMAP-MSTRRKHLGCAVFNNVIYAVGG 55 (133)
Q Consensus 5 ~~GG~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG 55 (133)
.+-|......-+.+.+-+..-..|..+.- -..+....-.+..++.||+||.
T Consensus 354 tTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgs 405 (670)
T 3ju4_A 354 ITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGS 405 (670)
T ss_dssp EEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEE
T ss_pred EecCcCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEec
Confidence 34455555666778888887888988752 2334555556778999999996
No 194
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata}
Probab=21.45 E-value=60 Score=20.28 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.0
Q ss_pred CeEEEEeCCCCceee
Q psy14436 63 SSAEKYNPHTNTWLP 77 (133)
Q Consensus 63 ~~~~~yd~~~~~W~~ 77 (133)
.++..||+.+++|.-
T Consensus 136 ~~FvsYd~~tG~W~F 150 (164)
T 3nf5_A 136 THFESYDPASGTYCF 150 (164)
T ss_dssp CEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCcEEEE
Confidence 678899999999963
No 195
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=21.05 E-value=82 Score=18.34 Aligned_cols=35 Identities=9% Similarity=-0.133 Sum_probs=21.4
Q ss_pred EEEEeCCCCceeecCCCcccccceEEEEECCEEEEEe
Q psy14436 18 VERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVG 54 (133)
Q Consensus 18 ~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 54 (133)
-+.||.++++....|.. +...+.+...++.|||--
T Consensus 74 g~~Fdl~tG~~~~~P~~--~L~~~~v~v~~g~V~V~~ 108 (130)
T 2jza_A 74 KQHFRLYDGFCLEDGAY--SVAAYDTQVTNGNVQISI 108 (130)
T ss_dssp CCEEETTTCCBSSCCSS--CCBCCCEEESSSEEEEEC
T ss_pred CCEEeCCCcCCCCCCcC--cceEEEEEEECCEEEEEe
Confidence 35799988887665542 222344555578888753
No 196
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=20.42 E-value=2.6e+02 Score=20.47 Aligned_cols=49 Identities=12% Similarity=-0.041 Sum_probs=32.7
Q ss_pred CCEEEEEecCCCCCccCeEEEEeCCCCceeeC--CCCCCcccceeeEEeCCeeeeecCceE
Q psy14436 47 NNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI--VAMTSRRSGLGPGSLQLTLPTLTSVKF 105 (133)
Q Consensus 47 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~~~~r~~~~~~~~~~~iy~~gG~~~ 105 (133)
++.+|+|-| +..++||..+.+...- +-+|. --++....+++|.|-|..+
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG~~y 208 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQGNQF 208 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEETTEE
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEECCEE
Confidence 578888877 5688999887654321 12221 2355566899998888876
No 197
>1oqe_K Tumor necrosis factor receptor superfamily member 13C; ligand receptor complex, immune system; 2.50A {Homo sapiens} SCOP: g.24.1.2
Probab=20.33 E-value=69 Score=13.81 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=11.1
Q ss_pred EEEEeCCCCceeecC
Q psy14436 18 VERFDPKLNRWTAMA 32 (133)
Q Consensus 18 ~~~yd~~t~~W~~~~ 32 (133)
..||||.........
T Consensus 7 ~~CfDpLvR~CVaC~ 21 (31)
T 1oqe_K 7 AECFDLLVRHCVACG 21 (31)
T ss_dssp TEEEETTTTEEEEGG
T ss_pred ccccChhhhcceEEE
Confidence 368999888776654
No 198
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=20.23 E-value=1.2e+02 Score=18.92 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=20.6
Q ss_pred EEEEeCC-CCceeecCCCcccccceEEEE-ECCEEEEEe
Q psy14436 18 VERFDPK-LNRWTAMAPMSTRRKHLGCAV-FNNVIYAVG 54 (133)
Q Consensus 18 ~~~yd~~-t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~G 54 (133)
-+.||+. +++....|. +.+...+.+.+ -++.||++|
T Consensus 125 g~~Fd~~~tG~~~~gPa-~~~L~~y~v~vd~dG~V~avg 162 (175)
T 4aay_B 125 FSVFDPEKGGQQVWGQA-TQNLPQYVLRVADNGDIFAEG 162 (175)
T ss_dssp CCEEEGGGTTEEEECSC-SSCCCBEEEEECTTSEEEEEE
T ss_pred CCEECCCCCceEecCCC-CCCcCEEEEEEEcCCEEEEEE
Confidence 3578887 777766543 22223343444 267788776
No 199
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=20.02 E-value=39 Score=21.70 Aligned_cols=11 Identities=0% Similarity=-0.070 Sum_probs=7.7
Q ss_pred CCeeeeecCce
Q psy14436 94 QLTLPTLTSVK 104 (133)
Q Consensus 94 ~~~iy~~gG~~ 104 (133)
.+++||+||..
T Consensus 119 ~~~vYIIGGiV 129 (197)
T 4fmw_A 119 ESKAYVIGGLV 129 (197)
T ss_dssp TTSEEEEECCC
T ss_pred CCCEEEEEEEE
Confidence 46897777754
Done!