RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14436
(133 letters)
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase, for which a structure has been
solved. The kelch motif forms a beta sheet. Several of
these sheets associate to form a beta propeller
structure as found in pfam00064, pfam00400 and
pfam00415.
Length = 46
Score = 56.1 bits (136), Expect = 6e-12
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 37 RRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMT 82
R G V IY +GG D LSS E Y+P TNTW + +M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 32.2 bits (74), Expect = 0.007
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMS 35
GY Q SVE +DP+ N W+ + M
Sbjct: 19 GYDGGQSLSSVEVYDPETNTWSKLPSMP 46
>gnl|CDD|128874 smart00612, Kelch, Kelch domain.
Length = 47
Score = 52.6 bits (127), Expect = 1e-10
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 49 VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLG 89
IY VGG D L S E Y+P TN W P+ +M + RSG G
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHG 41
Score = 46.8 bits (112), Expect = 2e-08
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNN 48
SVE +DP+ N+WT + M T R G AV N
Sbjct: 16 SVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 52.5 bits (126), Expect = 5e-09
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGR---DDSMELSSAEKYNPHTN 73
+VE F N+W+ +P+ + IY +GG D+ + E YNP TN
Sbjct: 407 TVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466
Query: 74 TW 75
W
Sbjct: 467 KW 468
Score = 50.5 bits (121), Expect = 3e-08
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSME-LSSAEKYNPHTNTW 75
+VE + P ++W P+ R + NN+IY +GG + E L + E ++ +TN W
Sbjct: 359 TVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418
Query: 76 LPIVAMTSRRSG 87
+ G
Sbjct: 419 SKGSPLPISHYG 430
Score = 48.2 bits (115), Expect = 2e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75
SV +D K W + + RK+ G VFNN IY +GG +S+ L++ E + P + W
Sbjct: 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW 370
Score = 43.6 bits (103), Expect = 8e-06
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 18 VERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75
VE ++P N+WT ++ ++ R + +FNN IY VGG ++ E Y+ TNTW
Sbjct: 458 VESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515
Score = 38.6 bits (90), Expect = 3e-04
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 24 KLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELS-SAEKYNPHTNTWLPIVAMT 82
L+ + + G V NNVIY +GG + + S Y+ T +W + +
Sbjct: 272 PLSEINTIIDIHYVYC-FGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI 330
Query: 83 SRRSGLG 89
R G
Sbjct: 331 YPRKNPG 337
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif.
Length = 50
Score = 39.4 bits (92), Expect = 2e-05
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 38 RKHLGCAVFNNVIYAVGGRDDSMELSSA-EKYNPHTNTWLPIVAMTSRR 85
R IY GG + + S+ Y+P T +W + + + R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 28.2 bits (63), Expect = 0.27
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 18 VERFDPKLNRWTAMAPMSTRR 38
V +DP+ W + P+ T R
Sbjct: 30 VLVYDPETGSWEKLPPLPTPR 50
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain.
Length = 48
Score = 35.0 bits (81), Expect = 9e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 47 NNVIYAVGGRDDSME-LSSAEKYNPHTNTWLPIVAMTSRRSG 87
IY GG D L+ Y+ TNTW + + R+G
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAG 42
Score = 24.2 bits (53), Expect = 7.1
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF 46
+ +D N W + + R V
Sbjct: 19 DLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 33.8 bits (77), Expect = 0.020
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 31 MAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75
+ PM R AV ++ IYA+GG++ + + E Y + W
Sbjct: 335 LPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKW 379
Score = 26.9 bits (59), Expect = 3.6
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYN 69
++E + ++W + M G V + IY +GGR + ++ +S N
Sbjct: 368 TIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMN 420
>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain.
Length = 49
Score = 30.7 bits (70), Expect = 0.034
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 40 HLGCAVFNNVIYAVGGRDDSME-LSSAEKYNPHTNTW 75
H ++ + +Y GG ++ LS ++ TNTW
Sbjct: 5 HTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTW 41
>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family
protein. Members of this protein family show
essentially full-length homology, cyclically permuted,
to YjhT from Escherichia coli. YjhT was shown to act as
a mutarotase for sialic acid, and by this ability to be
able to act as a virulence factor. Members of the YjhT
family (TIGR03547) and this cyclically-permuted family
have multiple repeats of the beta-propeller-forming
Kelch repeat.
Length = 323
Score = 30.9 bits (70), Expect = 0.17
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 21 FDPKLNRWTAMA--PMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPI 78
F+ + W + P + R + + C N +Y GG D+ KY+P T TW +
Sbjct: 144 FNLETQEWEELPDFPGAPRVQPV-CVKLQNELYVFGGGDNIAYTDGY-KYSPKTGTWEKV 201
Query: 79 VAMTSR---RSGLGPGSLQLT 96
S S LG S+ +
Sbjct: 202 ADPLSDGEPISLLGAASIAIN 222
>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that Drosophila
ring canal kelch protein is related to Galactose
Oxidase for which a structure has been solved. The
kelch motif forms a beta sheet. Several of these sheets
associate to form a beta propeller structure as found
in pfam00064, pfam00400 and pfam00415.
Length = 48
Score = 28.1 bits (63), Expect = 0.26
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 37 RRKHLGCAVFNNVIYAVGGRDDSMELSSAE--KYNPHTNTW 75
R V +Y VGG +LSS++ +P TN W
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVW 41
>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family. Members of
this protein family contain multiple copies of the
beta-propeller-forming Kelch repeat. All are full-length
homologs to YjhT of Escherichia coli, which has been
identified as a mutarotase for sialic acid. This protein
improves bacterial ability to obtain host sialic acid,
and thus serves as a virulence factor. Some bacteria
carry what appears to be a cyclically permuted homolog
of this protein.
Length = 346
Score = 29.6 bits (67), Expect = 0.39
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 11 ELQLQVSVERFDPKLNRWTAMAPMSTR--RKHLGCAVFNNVIYAVGG 55
Q+ V R+DPK N W + S G ++ N Y GG
Sbjct: 80 SPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGG 126
Score = 26.9 bits (60), Expect = 3.1
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 28 WTAMAPMST-RRKHLGCAVFNNVIYAVGG----RDDSME--LSSAEKYNPHTNTW 75
W +A R A + +Y GG + +Y+P N+W
Sbjct: 43 WQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW 97
>gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional.
Length = 480
Score = 29.2 bits (65), Expect = 0.59
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75
SVER+ W M + R + A NNVIY +GG ++ ++ E P+ + W
Sbjct: 332 SVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETD--TTTEYLLPNHDQW 388
Score = 28.9 bits (64), Expect = 0.82
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 14/106 (13%)
Query: 26 NRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRR 85
N W + PM++ R + NN +Y VGG + +S E++ W+ + ++ R
Sbjct: 297 NNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP---TSVERWFHGDAAWVNMPSLLKPR 353
Query: 86 SGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTREEKEPPHMYW 131
P + S+ + G +E T E P H W
Sbjct: 354 CN----------PAVASINNVIYVIGGHSET-DTTTEYLLPNHDQW 388
Score = 25.8 bits (56), Expect = 9.1
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 49 VIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRR---SGLGPGSLQL----TLPTLT 101
V+Y +GG ++ ++A N +N W+PI M S R SG+ P + +L LP T
Sbjct: 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPT 331
Query: 102 SVK 104
SV+
Sbjct: 332 SVE 334
>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase;
Provisional.
Length = 376
Score = 28.8 bits (65), Expect = 0.84
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 26 NRWTAMAPM-STRRKHLGCAVFNNVIYAVGG---RDDSMEL---SSAEKYNPHTNTW 75
WT +A R+ A + +Y GG + KY+P TN+W
Sbjct: 62 KGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW 118
Score = 28.1 bits (63), Expect = 1.5
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 11 ELQLQVSVERFDPKLNRWTAM---APMSTRRKHLGCAVFNNVIYAVGG 55
Q+ V ++DPK N W + +P+ H+ ++ N Y GG
Sbjct: 101 SPQVFDDVYKYDPKTNSWQKLDTRSPVGL-AGHVAVSLHNGKAYITGG 147
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 28.5 bits (64), Expect = 1.0
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 68 YNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSV 103
Y P +T L A+ GLGPG L L T +
Sbjct: 16 YRPQEDTQLLADAL--AAEGLGPGRRVLDLCTGSGA 49
>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR). Quinone
oxidoreductase (QOR) and 2-haloacrylate reductase. QOR
catalyzes the conversion of a quinone + NAD(P)H to a
hydroquinone + NAD(P)+. Quinones are cyclic diones
derived from aromatic compounds. Membrane bound QOR
actin the respiratory chains of bacteria and
mitochondria, while soluble QOR acts to protect from
toxic quinones (e.g. DT-diaphorase) or as a soluble
eye-lens protein in some vertebrates (e.g.
zeta-crystalin). QOR reduces quinones through a
semi-quinone intermediate via a NAD(P)H-dependent single
electron transfer. QOR is a member of the medium chain
dehydrogenase/reductase family, but lacks the
zinc-binding sites of the prototypical alcohol
dehydrogenases of this group. 2-haloacrylate reductase,
a member of this subgroup, catalyzes the NADPH-dependent
reduction of a carbon-carbon double bond in
organohalogen compounds. Although similar to QOR,
Burkholderia 2-haloacrylate reductase does not act on
the quinones 1,4-benzoquinone and 1,4-naphthoquinone.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES.
These proteins typically form dimers (typically higher
plants, mammals) or tetramers (yeast, bacteria), and
have 2 tightly bound zinc atoms per subunit, a catalytic
zinc at the active site and a structural zinc in a lobe
of the catalytic domain. NAD(H) binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 320
Score = 28.2 bits (64), Expect = 1.3
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 88 LGPGSLQLTLPTLTSVKFTYIIPGDPAERLKFTRE 122
L GSL LT P+L F YI E L E
Sbjct: 249 LSKGSLFLTRPSL----FHYI--ATREELLARAAE 277
>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein.
Length = 470
Score = 27.6 bits (61), Expect = 2.1
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 21 FDPKLNRWTAMAPMSTRRKHLGC-----AVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75
FD + W+ ++P + HL C + +Y GGRD S + + ++ TN W
Sbjct: 198 FDLETRTWS-ISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEW 256
>gnl|CDD|215115 PLN02171, PLN02171, endoglucanase.
Length = 629
Score = 27.5 bits (61), Expect = 2.5
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 77 PIVAMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAE 115
P+ +T G S +LP S++F Y+ PA+
Sbjct: 582 PLWGLTKAGYGYVLPSWMPSLPAGKSLEFVYVHSASPAD 620
>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 381
Score = 26.6 bits (59), Expect = 4.2
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 44 AVFNNVIYAVGGRDDS-----MELSSAEKYNPHTNTW 75
AV +Y GG S + A +Y+P TN+W
Sbjct: 89 AVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSW 125
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 25.9 bits (58), Expect = 7.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 44 AVFNNVIYAVGGRDDSMELSSA 65
V N + AV RD ++E SA
Sbjct: 222 GVTENSLDAVSDRDFALEFLSA 243
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.417
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,833,128
Number of extensions: 564840
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 33
Length of query: 133
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 47
Effective length of database: 7,123,158
Effective search space: 334788426
Effective search space used: 334788426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)