RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14436
(133 letters)
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 117 bits (296), Expect = 2e-33
Identities = 21/73 (28%), Positives = 31/73 (42%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
V ++PK W +APM T R G A+ I GG + +S E ++ TN W
Sbjct: 176 RVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235
Query: 77 PIVAMTSRRSGLG 89
+ RS +
Sbjct: 236 VMTEFPQERSSIS 248
Score = 109 bits (274), Expect = 4e-30
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSME-LSSAEKYNPHTNTW 75
SV +DP +W+ + + + N +IY +GG+ D + + YNP W
Sbjct: 128 SVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187
Query: 76 LPIVAMTSRRSGLGPGSL 93
+ M + RS G
Sbjct: 188 KDLAPMKTPRSMFGVAIH 205
Score = 104 bits (262), Expect = 2e-28
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDS--M 60
+ ++ LQ + D + W + P+ + R G ++ IY V G+D
Sbjct: 65 LYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEA 124
Query: 61 ELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL 93
L S Y+P W + + + G S
Sbjct: 125 SLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157
Score = 92.8 bits (231), Expect = 7e-24
Identities = 25/99 (25%), Positives = 33/99 (33%), Gaps = 11/99 (11%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRD---------D 58
G E L SVE FD K N+W M R + +YA+GG
Sbjct: 214 GVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFA 273
Query: 59 SMELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTL 97
E++ KY W + + R G L L
Sbjct: 274 PTEVNDIWKYEDDKKEWAGM--LKEIRYASGASCLATRL 310
Score = 87.8 bits (218), Expect = 5e-22
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 17 SVERFDPKLNRWT-AMAPMSTRRKHLGCAVFNNVIYAVGGRD------DSMELSSAEKYN 69
+ +DP N R H N +Y VGG D S + +
Sbjct: 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLD 84
Query: 70 PHTNTWLPIVAMTSRRSGLGPGSL 93
++ W+ + + S R G G +
Sbjct: 85 NVSSEWVGLPPLPSARCLFGLGEV 108
Score = 44.3 bits (105), Expect = 2e-06
Identities = 4/41 (9%), Positives = 11/41 (26%), Gaps = 4/41 (9%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIY--AVGG 55
+ +++ W M R G + + +
Sbjct: 279 DIWKYEDDKKEWAGMLKE--IRYASGASCLATRLNLFKLSK 317
Score = 40.8 bits (96), Expect = 4e-05
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 43 CAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW-LPIVAMTSRRSGLG 89
++I V ++A Y+P N L +A R+
Sbjct: 11 GMFVKDLILLVND-------TAAVAYDPMENECYLTALAEQIPRNHSS 51
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 117 bits (295), Expect = 3e-33
Identities = 26/73 (35%), Positives = 32/73 (43%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
+ +DPK W +APM T R G V + I G D+ SSAE Y+ N W
Sbjct: 166 KMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225
Query: 77 PIVAMTSRRSGLG 89
P A RS L
Sbjct: 226 PFEAFPQERSSLS 238
Score = 108 bits (272), Expect = 6e-30
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSME-LSSAEKYNPHTNTW 75
SV +D +W P+ +++Y +GG+ + L+ Y+P W
Sbjct: 118 SVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177
Query: 76 LPIVAMTSRRSGLGPGSL 93
+ M + RS G
Sbjct: 178 KELAPMQTARSLFGATVH 195
Score = 105 bits (265), Expect = 7e-29
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 3 EDFNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGR---DDS 59
+N +E + +FD + W M P+ + R G N IY VGGR D
Sbjct: 54 LFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGE 113
Query: 60 MELSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL 93
L S Y+ + W + G S
Sbjct: 114 RCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH 147
Score = 94.7 bits (236), Expect = 1e-24
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDD--------- 58
G + L S E + N+W R L +YA+GG
Sbjct: 204 GVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELV 263
Query: 59 SMELSSAEKYNPHTNTWLPIVAMTSRRSG 87
EL+ +YN W ++ + +G
Sbjct: 264 PTELNDIWRYNEEEKKWEGVLREIAYAAG 292
Score = 88.6 bits (220), Expect = 2e-22
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 17 SVERFDPKLNRW-TAMAPMSTRRKHLGCAVFNNVIYAVGGRD------DSMELSSAEKYN 69
+DP N A + H+ N ++ GG + + +++
Sbjct: 14 GAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFD 73
Query: 70 PHTNTWLPIVAMTSRRSGLGPGSL 93
+ WL + + S R G G
Sbjct: 74 HLDSEWLGMPPLPSPRCLFGLGEA 97
Score = 54.7 bits (132), Expect = 5e-10
Identities = 4/46 (8%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMEL 62
+ R++ + +W + G + + + L
Sbjct: 269 DIWRYNEEEKKWEGVLREIAYA--AGATFLPVRLNVLRLTKMAENL 312
Score = 43.1 bits (102), Expect = 6e-06
Identities = 5/45 (11%), Positives = 13/45 (28%), Gaps = 8/45 (17%)
Query: 46 FNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVA-MTSRRSGLG 89
++I+ + A Y+P N ++ +
Sbjct: 3 LQDLIFMISEE-------GAVAYDPAANECYCASLSSQVPKNHVS 40
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 117 bits (294), Expect = 3e-33
Identities = 35/82 (42%), Positives = 50/82 (60%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
GY L + SVE++DP WT + PM+T+R G A+ N+ IY VGG D + LSS E
Sbjct: 167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEA 226
Query: 68 YNPHTNTWLPIVAMTSRRSGLG 89
YN T++W + +MT+ R +G
Sbjct: 227 YNIRTDSWTTVTSMTTPRCYVG 248
Score = 113 bits (284), Expect = 8e-32
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
S+ER+DP +++W+ + M T R+ G V + VIY +GG D L+S EKY+PHT W
Sbjct: 129 SMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWT 188
Query: 77 PIVAMTSRRSGLGPGSL 93
+ M ++RSG G L
Sbjct: 189 NVTPMATKRSGAGVALL 205
Score = 104 bits (262), Expect = 2e-28
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
G+ SVE ++ + + WT + M+T R ++G V +YA+ G D + LSS E
Sbjct: 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIEC 273
Query: 68 YNPHTNTWLPIVAMTSRRSGLG 89
Y+P ++W + +M ++R G
Sbjct: 274 YDPIIDSWEVVTSMGTQRCDAG 295
Score = 104 bits (261), Expect = 2e-28
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 8 GYRELQLQVSVERFDPKLNR---WTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSS 64
GY SVE D + W ++APM+ RR G ++IY GG D S +S
Sbjct: 70 GYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTS 129
Query: 65 AEKYNPHTNTWLPIVAMTSRRSGLGPGSL 93
E+Y+P+ + W + M + R G G
Sbjct: 130 MERYDPNIDQWSMLGDMQTAREGAGLVVA 158
Score = 98.1 bits (245), Expect = 5e-26
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTN--- 73
VE++DPK W+ + ++ +R+++ ++ IY +GG D LSS E + +
Sbjct: 32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91
Query: 74 TWLPIVAMTSRRSGLGPGSLQ 94
W + M RR G +L
Sbjct: 92 VWYSVAPMNVRRGLAGATTLG 112
Score = 58.5 bits (142), Expect = 2e-11
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 34 MSTRRKHLGCAVFNNVIYAVGGRDDS-MELSSAEKYNPHTNTWLPIVAMTSRRSGLG 89
M R N V+ VGG + EKY+P T W + ++T +R +
Sbjct: 2 MQGPRTRARLGA-NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVA 57
Score = 51.5 bits (124), Expect = 7e-09
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFN 47
GY L S+E +DP ++ W + M T+R G V
Sbjct: 261 GYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 116 bits (292), Expect = 7e-33
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
G+ S E + P+ N W + M+T R G V +N IYA GG D +L+S E+
Sbjct: 176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVER 235
Query: 68 YNPHTNTWLPIVAMTSRRSGLG 89
Y+ T TW + M RRS LG
Sbjct: 236 YDVETETWTFVAPMKHRRSALG 257
Score = 110 bits (277), Expect = 1e-30
Identities = 38/77 (49%), Positives = 49/77 (63%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
SVER++P+ + W +APM TRR +G AV N ++YAVGG D + L+SAE Y P N W
Sbjct: 138 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR 197
Query: 77 PIVAMTSRRSGLGPGSL 93
I AM + RSG G L
Sbjct: 198 MITAMNTIRSGAGVCVL 214
Score = 109 bits (275), Expect = 2e-30
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
+++ ++P N+W+ APMS R +G V + IYAVGG + +S E+Y P + W
Sbjct: 91 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH 150
Query: 77 PIVAMTSRRSGLGPGSL 93
+ M +RR G+G L
Sbjct: 151 LVAPMLTRRIGVGVAVL 167
Score = 103 bits (258), Expect = 7e-28
Identities = 37/82 (45%), Positives = 45/82 (54%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
GY SVER+D + WT +APM RR LG V IY +GG D L S E
Sbjct: 223 GYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVEC 282
Query: 68 YNPHTNTWLPIVAMTSRRSGLG 89
Y+P T+TW + MTS RSG+G
Sbjct: 283 YDPDTDTWSEVTRMTSGRSGVG 304
Score = 97.0 bits (242), Expect = 1e-25
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGR----DDSMELSSAEKYNPHT 72
+E ++P W +A + R L V ++YAVGGR D + + S+ + YNP T
Sbjct: 40 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99
Query: 73 NTWLPIVAMTSRRSGLGPGSLQ 94
N W P M+ R+ +G G +
Sbjct: 100 NQWSPCAPMSVPRNRIGVGVID 121
Score = 58.9 bits (143), Expect = 1e-11
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 26 NRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRR 85
+ + R V +IY GG LS E YNP TWL + + R
Sbjct: 4 HHHHHHSSGLVPRGSHAPKV-GRLIYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPR 61
Query: 86 SGLG 89
SGL
Sbjct: 62 SGLA 65
Score = 48.5 bits (116), Expect = 8e-08
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAV 45
GY SVE +DP + W+ + M++ R +G AV
Sbjct: 270 GYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 116 bits (292), Expect = 7e-33
Identities = 31/73 (42%), Positives = 40/73 (54%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
+VE ++ N WT +A MSTRR G V NN++YAVGG D + S E Y+P TN W
Sbjct: 174 TVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233
Query: 77 PIVAMTSRRSGLG 89
+ M R G
Sbjct: 234 QVADMNMCRRNAG 246
Score = 111 bits (280), Expect = 3e-31
Identities = 36/86 (41%), Positives = 51/86 (59%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
G+ +V+ +DP ++WT++A M RR LG AV N ++YAVGG D S LSS E
Sbjct: 69 GFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEA 128
Query: 68 YNPHTNTWLPIVAMTSRRSGLGPGSL 93
YN +N W + M +RRS +G G +
Sbjct: 129 YNIKSNEWFHVAPMNTRRSSVGVGVV 154
Score = 109 bits (275), Expect = 2e-30
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSME--LSSAEKYNPHTNT 74
SVE ++ K N W +APM+TRR +G V ++YAVGG D + LS+ E YN TN
Sbjct: 125 SVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE 184
Query: 75 WLPIVAMTSRRSGLGPGSL 93
W I M++RRSG G G L
Sbjct: 185 WTYIAEMSTRRSGAGVGVL 203
Score = 106 bits (268), Expect = 2e-29
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
G + + SVE +D K RW +A + +RR G +++AVGG + S+ + + +
Sbjct: 22 GGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDS 81
Query: 68 YNPHTNTWLPIVAMTSRRSGLGPGSL 93
Y+P + W + M RRS LG L
Sbjct: 82 YDPVKDQWTSVANMRDRRSTLGAAVL 107
Score = 101 bits (254), Expect = 2e-27
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
G+ ++ SVE +DP N W +A M+ R++ G N ++Y VGG D S L+S E
Sbjct: 212 GHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEY 271
Query: 68 YNPHTNTWLPIVA-MTSRRSGLG 89
YNP T+ W + + M++ RS G
Sbjct: 272 YNPTTDKWTVVSSCMSTGRSYAG 294
Score = 60.4 bits (147), Expect = 4e-12
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 34 MSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLG 89
MS R + ++ VGG + S E Y+ W + + SRR G
Sbjct: 2 MSVRTRLRTPMNLPKLMVVVGG-QAPKAIRSVECYDFKEERWHQVAELPSRRCRAG 56
Score = 48.0 bits (115), Expect = 1e-07
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAP-MSTRRKHLGCAVFNNVI 50
G SVE ++P ++WT ++ MST R + G V + +
Sbjct: 259 GDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 114 bits (287), Expect = 4e-32
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
S E +DP WT + PM RK+ G + I+AVGG++ L + E Y+ N W
Sbjct: 170 SCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229
Query: 77 PIVAMTSRRSGLG 89
+ M + +
Sbjct: 230 MVSPMPWKGVTVK 242
Score = 109 bits (274), Expect = 3e-30
Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 5 FNHGYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSME--- 61
G L E +D + W M T+R G N +IY GG +
Sbjct: 110 SEVGNSALY---LFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGR 166
Query: 62 -LSSAEKYNPHTNTWLPIVAMTSRRSGLGPGSL 93
L+S E Y+P T TW + M R G +
Sbjct: 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV 199
Score = 107 bits (268), Expect = 2e-29
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSME-LSSAEKYNPHTNTW 75
++ ++ + W + T R L IY GG + L E Y+ T +W
Sbjct: 71 RMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW 130
Query: 76 LPIVAMTSRRSGLGPGSLQ 94
+M ++R G
Sbjct: 131 HTKPSMLTQRCSHGMVEAN 149
Score = 102 bits (255), Expect = 1e-27
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
G L +VE +D KLN W ++PM + + CA +++Y + G L +
Sbjct: 208 GQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILE 267
Query: 68 YNPHTNTWLPIVAMTSRRSGLG 89
YN T+ W+ + +
Sbjct: 268 YNTETDKWVANSKVRAFPVTSC 289
Score = 100 bits (251), Expect = 7e-27
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWL 76
S F+PK WT + +R+ C ++NV+Y +GG + + YN ++W
Sbjct: 25 SCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLF-PIKRMDCYNVVKDSWY 83
Query: 77 PIVAMTSRRSGLGPGSL 93
+ + R L +
Sbjct: 84 SKLGPPTPRDSLAACAA 100
Score = 51.2 bits (123), Expect = 9e-09
Identities = 6/54 (11%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSME 61
G++ + + ++ + ++W A + + V+ G ++++E
Sbjct: 255 GFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLIC---VVDTCGANEETLE 305
Score = 46.2 bits (110), Expect = 5e-07
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 4/42 (9%)
Query: 48 NVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLG 89
I GG S +NP +W I +R
Sbjct: 13 YRIALFGGSQ----PQSCRYFNPKDYSWTDIRCPFEKRRDAA 50
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 75.4 bits (185), Expect = 3e-17
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 17 SVERFDPKLNRWTAMA-PMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75
V +++PK N W + V N Y GG + ++ E N
Sbjct: 87 DVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDS 146
Query: 76 LPIVAMTSRRSGLGP 90
I + +
Sbjct: 147 TAIDKINAHYFDKKA 161
Score = 66.1 bits (161), Expect = 5e-14
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 21 FDPKLNRWTAMAPM-STRRKHLGCAVFNNVIYAVGGRDDSME-----LSSAEKYNPHTNT 74
K +WTA+A R A + +Y GG + E + KYNP TN+
Sbjct: 38 TQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97
Query: 75 WLPIVA-MTSRRSGLG 89
W+ +++ +G
Sbjct: 98 WVKLMSHAPMGMAGHV 113
Score = 61.1 bits (148), Expect = 3e-12
Identities = 9/92 (9%), Positives = 24/92 (26%), Gaps = 4/92 (4%)
Query: 5 FNHGYRELQLQVSVERFDPKLNRWTAMAPMS-TRRKHLGCAVFNNVIYAVGGRDDSMELS 63
F+ + + FDP +W+ + + + G +
Sbjct: 157 FDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRT 216
Query: 64 S---AEKYNPHTNTWLPIVAMTSRRSGLGPGS 92
+ + W + ++S G +
Sbjct: 217 DAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA 248
Score = 55.3 bits (133), Expect = 3e-10
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSME-LSSAEKYNPHTNTW 75
S + +W +S R + +NN + +GG + ++ + N
Sbjct: 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345
Score = 50.3 bits (120), Expect = 2e-08
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 19/94 (20%)
Query: 15 QVSVERFDPKLNRWTAMAPMS--TRRKHLGCAVFNNVIYAVGG----------------- 55
V F +W +AP+S + N+ + GG
Sbjct: 218 AVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYA 277
Query: 56 RDDSMELSSAEKYNPHTNTWLPIVAMTSRRSGLG 89
+ + S + + H W ++ R+
Sbjct: 278 HEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV 311
Score = 46.1 bits (109), Expect = 6e-07
Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 3/62 (4%)
Query: 29 TAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAM-TSRRSG 87
+ + K A+ N+ +Y G + W + A R
Sbjct: 1 SVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKL--DTQAKDKKWTALAAFPGGPRDQ 58
Query: 88 LG 89
Sbjct: 59 AT 60
Score = 44.9 bits (106), Expect = 1e-06
Identities = 10/83 (12%), Positives = 19/83 (22%), Gaps = 14/83 (16%)
Query: 8 GYRELQLQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNNVIYAVGGRDDSMELSSAEK 67
G + E + TA+ ++ Y +D
Sbjct: 126 GVNQNIFNGYFEDLNEAGKDSTAIDKINAH-------------YFDKKAEDYFFNKFLLS 172
Query: 68 YNPHTNTWLPIVAM-TSRRSGLG 89
++P T W +G
Sbjct: 173 FDPSTQQWSYAGESPWYGTAGAA 195
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 51.7 bits (123), Expect = 7e-09
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 17 SVERFDPKLNRWTAMAPM-STRRKHLGCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTW 75
FD K W+ + + TR +H C++ + + +GG + + YN +
Sbjct: 469 DNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG---PAMLLYNVTEEIF 525
Query: 76 LPIVAMTSRRSGLGPGS 92
+ +
Sbjct: 526 KDVTPKDEFFQNSLVSA 542
Score = 38.6 bits (89), Expect = 2e-04
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 17 SVERFDPKLNRWTAMAPMST-------RRKHLGCAV-FNNVIYAVGGRDD-SMELSSAEK 67
+ + ++ + R H + NN + +GGR LS
Sbjct: 413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI 472
Query: 68 YNPHTNTWLPIVAMTSRRSG 87
++ T W I +++ R
Sbjct: 473 FDMKTREWSMIKSLSHTRFR 492
Score = 33.6 bits (76), Expect = 0.012
Identities = 9/76 (11%), Positives = 16/76 (21%), Gaps = 7/76 (9%)
Query: 22 DPKLNRWTAMAPMST----RRKHLGCAVFNNVIYAVGGRDDSMELSSA---EKYNPHTNT 74
+ T + + R + + VGG S +P + T
Sbjct: 578 ENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637
Query: 75 WLPIVAMTSRRSGLGP 90
I
Sbjct: 638 LTSIPISRRIWEDHSL 653
Score = 25.9 bits (56), Expect = 6.4
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 8/48 (16%)
Query: 16 VSVERFDPKLNRWTAMAPMSTRRK--------HLGCAVFNNVIYAVGG 55
S+ DP T++ + + I+ +GG
Sbjct: 626 NSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 49.2 bits (116), Expect = 6e-08
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 17 SVERFDPKLNRWTAMAPMSTRR-KHLGCAVFNNVIYAVGGRDD-SMELSSAEKYNPHTNT 74
+D + W M R + + ++ +GG + + E Y+P + T
Sbjct: 266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325
Query: 75 WLPIVAMTSRR 85
W +
Sbjct: 326 WTSLPNAKVNP 336
Score = 41.1 bits (95), Expect = 4e-05
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 16 VSVERFDPKLNRWTAMAPMSTRRK-HLGCAVFNNVIYAVGGR------DDSMELSSAEKY 68
+++ N A + R H + + + GG+ +DS + + E Y
Sbjct: 434 ITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY 493
Query: 69 NPHTNTWLPIVAMTSRRS 86
P +T+ + R
Sbjct: 494 VPEQDTFYKQNPNSIVRV 511
Score = 39.6 bits (91), Expect = 1e-04
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCAVF---NNVIYAVGGR--DDSMELSSAEKYNPH 71
+ E + P+ + + P S R + ++ V GG D + A+ + P+
Sbjct: 489 TPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPN 548
Query: 72 TNTWLPIVAMTSRRSGLGPGS 92
T +
Sbjct: 549 YLYNSNGNLATRPKITRTSTQ 569
Score = 37.6 bits (86), Expect = 5e-04
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 10/104 (9%)
Query: 17 SVERFDPKLNRWTAMAPMSTRRKHLGCA----VFNNVIYAVGGRDDSM-----ELSSAEK 67
+ E + P WT++ +N + G + S+ +
Sbjct: 315 NGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY 374
Query: 68 YNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPG 111
Y + S R G+ P ++ +VK + G
Sbjct: 375 YTSGSGDVKSAGKRQSNR-GVAPDAMCGNAVMYDAVKGKILTFG 417
Score = 33.4 bits (75), Expect = 0.016
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 26 NRWTAMAPMSTRRKHL--GCAVFNNVIYAVGGRDDSMELSSAEKYNPHTNTWLPIVAMTS 83
+ T+ G ++ N V G +D+ Y+ +++W+P M
Sbjct: 229 GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK---KTSLYDSSSDSWIPGPDMQV 285
Query: 84 RRS 86
R
Sbjct: 286 ARG 288
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.56
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 80 AMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAERLK--FTREEKEPPHMYW 131
A ++R L GSL+ L T+ F A +L+ F + EP +
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFI-------ASQLQEQFNKILPEPTEGFA 49
Score = 26.2 bits (57), Expect = 4.9
Identities = 12/71 (16%), Positives = 17/71 (23%), Gaps = 30/71 (42%)
Query: 63 SSAEKYNPHT---NTWL-------------------PIVAMTS--------RRSGLGPGS 92
AEK WL P++ + + G PG
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 93 LQLTLPTLTSV 103
L+ L T
Sbjct: 263 LRSYLKGATGH 273
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 1.9
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 41/138 (29%)
Query: 14 LQVSVERFDPKLNRWTAMAPMSTRRKHLGCAVFNN----------VIYAVGGRDDSMEL- 62
++ S+ +P R+ +VF +I+ + D M +
Sbjct: 359 IESSLNVLEPAE----------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 63 ------SSAEKYNPHTNTWLPIVAMTSRRSGLGPGSLQLTLPTLTSVKFTYIIPGDPAER 116
S EK + +P + + + +L ++ + Y IP
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDH----YNIP------ 456
Query: 117 LKFTREEKEPPH--MYWY 132
F ++ PP+ Y+Y
Sbjct: 457 KTFDSDDLIPPYLDQYFY 474
>1u7g_A Probable ammonium transporter; right handed helical bundle,
transmembrane helices, ammonia membrane protein, RH
protein, transport protein; HET: MSE BOG; 1.40A
{Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A*
1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A*
3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A
2nuu_A* 3c1j_A 2npk_A
Length = 385
Score = 26.4 bits (59), Expect = 3.5
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 86 SGLGPGSLQLTLPTLTSVKF--------TYIIPGDPAERLKFT 120
+ ++ ++ V F +I G AER++F
Sbjct: 84 KNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFP 126
>1a6z_A HFE; HFE, hereditary hemochromatosis, MHC class I, MHC class I
complex; 2.60A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 1de4_A*
Length = 275
Score = 25.7 bits (57), Expect = 5.8
Identities = 5/21 (23%), Positives = 7/21 (33%), Gaps = 2/21 (9%)
Query: 21 FDPKLNRWTA--MAPMSTRRK 39
F P W A T+ +
Sbjct: 126 FCPDTLDWRAAEPRAWPTKLE 146
>1gup_A Galactose-1-phosphate uridylyltransferase;
nucleotidyltransferase, galactose metabolism; HET: GDU;
1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB:
1guq_A* 1hxq_A* 1hxp_A*
Length = 348
Score = 25.7 bits (55), Expect = 6.1
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 20 RFDPKLNRWTAMAPMSTRRKHLG 42
R++P +W ++P +R G
Sbjct: 13 RYNPLTGQWILVSPHRAKRPWQG 35
>3m17_A IGG receptor FCRN large subunit P51; immunoglobulin binding
protein, cell membrane, disulfide BON glycoprotein,
IGG-binding protein, immunoglobulin domain; 2.60A {Homo
sapiens} PDB: 1exu_A 3m1b_A
Length = 267
Score = 25.3 bits (56), Expect = 7.6
Identities = 4/21 (19%), Positives = 8/21 (38%), Gaps = 2/21 (9%)
Query: 21 FDPKLNRWTA--MAPMSTRRK 39
FD K W ++ ++
Sbjct: 120 FDLKQGTWGGDWPEALAISQR 140
>3fru_A Neonatal FC receptor; complex (immunoglobulin-binding protein),
complex (immunoglo binding protein) complex; HET: NAG
FUL NDG BMA MAN GAL FUC; 2.20A {Rattus norvegicus} SCOP:
b.1.1.2 d.19.1.1 PDB: 1frt_A* 1i1a_A*
Length = 269
Score = 24.9 bits (55), Expect = 9.8
Identities = 3/21 (14%), Positives = 6/21 (28%), Gaps = 2/21 (9%)
Query: 21 FDPKLNRWTA--MAPMSTRRK 39
F+P+ W+
Sbjct: 122 FNPRTGNWSGEWPETDIVGNL 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.417
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,083,041
Number of extensions: 105847
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 76
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)