BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14437
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROW|A Chain A, The C1 Domain Of Rock Ii
Length = 84
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 15 RCRIKVHKDHLNGKEEAIAPCKLHCD 40
RC IK HKDH++ KEE IAPCK++ D
Sbjct: 59 RCHIKCHKDHMDKKEEIIAPCKVYYD 84
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 89 KDHLNGKEEAIAPCKLHCD 107
KDH++ KEE IAPCK++ D
Sbjct: 66 KDHMDKKEEIIAPCKVYYD 84
>pdb|2ROV|A Chain A, The Split Ph Domain Of Rock Ii
Length = 117
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 42 NSAKEMLLLAPSTDDQKLWVQRLSKKIQK 70
+SAK +LLLA ST++Q+ WV RL KKI K
Sbjct: 88 SSAKNLLLLANSTEEQQKWVSRLVKKIPK 116
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 109 NSAKEMLLLAPSTDDQKLWVQRLSKKIQK 137
+SAK +LLLA ST++Q+ WV RL KKI K
Sbjct: 88 SSAKNLLLLANSTEEQQKWVSRLVKKIPK 116
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 26.9 bits (58), Expect = 5.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 121 TDDQKLWVQRLSKKIQKCGYKANTLSDGVKISPREKT 157
T+ QKL VQ + + ++ LS+ VKI+ EKT
Sbjct: 89 TERQKLLVQTVERXSKRFNLDIRVLSEVVKINKEEKT 125
>pdb|2DRC|A Chain A, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|2DRC|B Chain B, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
Length = 159
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 41 PNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 72
P +L P TDD+ WV+ + + I CG
Sbjct: 55 PGRKNIILSSQPGTDDRVTWVKSVDEAIAACG 86
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 108 PNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 139
P +L P TDD+ WV+ + + I CG
Sbjct: 55 PGRKNIILSSQPGTDDRVTWVKSVDEAIAACG 86
>pdb|1DRB|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|1DRB|B Chain B, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
Length = 159
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 41 PNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 72
P +L P TDD+ WV+ + + I CG
Sbjct: 55 PGRKNIILSSQPGTDDRVTWVKSVDEAIAACG 86
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 108 PNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 139
P +L P TDD+ WV+ + + I CG
Sbjct: 55 PGRKNIILSSQPGTDDRVTWVKSVDEAIAACG 86
>pdb|3DRC|A Chain A, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|3DRC|B Chain B, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|1DYH|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYH|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYI|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYI|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYJ|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYJ|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1RB2|A Chain A, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RB2|B Chain B, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RB3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RB3|B Chain B, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RD7|A Chain A, Dihydrofolate Reductase Complexed With Folate
pdb|1RD7|B Chain B, Dihydrofolate Reductase Complexed With Folate
pdb|1RE7|A Chain A, Dihydrofolate Reductase Complexed With Folate
pdb|1RE7|B Chain B, Dihydrofolate Reductase Complexed With Folate
pdb|1JOL|A Chain A, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|1JOL|B Chain B, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|2ANO|A Chain A, Crystal Structure Of E.Coli Dihydrofolate Reductase In
Complex With Nadph And The Inhibitor Ms-Sh08-17
pdb|2ANQ|A Chain A, Crystal Structure Of E.Coli Dhfr In Complex With Nadph
And The Inhibitor Compound 10a.
pdb|2INQ|A Chain A, Neutron Crystal Structure Of Escherichia Coli
Dihydrofolate Reductase Bound To The Anti-Cancer Drug,
Methotrexate
pdb|1DRE|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1DRH|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1JOM|A Chain A, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|1RA1|A Chain A, Dihydrofolate Reductase Complexed With Nicotinamide
Adenine Dinucleotide Phosphate (Reduced Form)
pdb|1RA2|A Chain A, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RA3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RA8|A Chain A, Dihydrofolate Reductase Complexed With Folate And 2-
Monophosphoadenosine 5'-diphosphoribose
pdb|1RA9|A Chain A, Dihydrofolate Reductase Complexed With Nicotinamide
Adenine Dinucleotide Phosphate (Oxidized Form)
pdb|1RC4|A Chain A, Dihydrofolate Reductase Complexed With 5,10-
Dideazatetrahydrofolate And Nicotinamide Adenine
Dinucleotide Phosphate (Oxidized Form)
pdb|1RF7|A Chain A, Structure Of Dihydrofolate Reductase Complexed With
Dihydrofolate
pdb|1RG7|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate
pdb|1RH3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (Reduced
Form)
pdb|1RX1|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With
Nicotinamide Adenine Dinucleotide Phosphate (reduced
Form)
pdb|1RX2|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
With Folate And Nicotinamide Adenine Dinucleotide
Phosphate (Oxidized Form)
pdb|1RX3|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
Methotrexate And Nicotinamide Adenine Dinucleotide
Phosphate (Reduced Form)
pdb|1RX4|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With
5,10- Dideazatetrahydrofolate And
2'-monophosphoadenosine 5'- Diphosphoribose
pdb|1RX5|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With
5,10- Dideazatetrahydrofolate
pdb|1RX6|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
5,10- Dideazatetrahydrofolate And Nicotinamide Adenine
Dinucleotide Phosphate (Reduced Form)
pdb|1RX7|A Chain A, Structure Of Dihydrofolate Reductase Complexed With
Folate
pdb|1RX8|A Chain A, Dihydrofolate Reductase Complexed With Folate And 2'-
Monophosphoadenosine 5'-Diphosphoribose
pdb|1RX9|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|5DFR|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|6DFR|A Chain A, Crystal Structures Of Escherichia Coli Dihydrofolate
Reductase. The Nadp+ Holoenzyme And The
Folate(Dot)nadp+ Ternary Complex. Substrate Binding And
A Model For The Transition State
pdb|7DFR|A Chain A, Crystal Structures Of Escherichia Coli Dihydrofolate
Reductase. The Nadp+ Holoenzyme And The
Folate(Dot)nadp+ Ternary Complex. Substrate Binding And
A Model For The Transition State
pdb|3KFY|A Chain A, Dynamic Switching And Partial Occupancies Of A Small
Molecule Inhibitor Complex Of Dhfr
pdb|3OCH|A Chain A, Chemically Self-Assembled Antibody Nanorings (Csans):
Design And Characterization Of An Anti-Cd3 Igm
Biomimetic
pdb|3OCH|B Chain B, Chemically Self-Assembled Antibody Nanorings (Csans):
Design And Characterization Of An Anti-Cd3 Igm
Biomimetic
pdb|3QL3|A Chain A, Re-Refined Coordinates For Pdb Entry 1rx2
pdb|3QYL|A Chain A, Sensitivity Of Receptor Internal Motions To Ligand
Binding Affinity And Kinetic Off-Rate
pdb|3QYO|A Chain A, Sensitivity Of Receptor Internal Motions To Ligand
Binding Affinity And Kinetic Off-Rate
pdb|3R33|A Chain A, Evidence For Dynamic Motion In Proteins As A Mechanism
For Ligand Dissociation
Length = 159
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 41 PNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 72
P +L P TDD+ WV+ + + I CG
Sbjct: 55 PGRKNIILSSQPGTDDRVTWVKSVDEAIAACG 86
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 108 PNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 139
P +L P TDD+ WV+ + + I CG
Sbjct: 55 PGRKNIILSSQPGTDDRVTWVKSVDEAIAACG 86
>pdb|1DDS|A Chain A, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3)
Complexed With Methotrexate
pdb|1DDS|B Chain B, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3)
Complexed With Methotrexate
pdb|1DDR|A Chain A, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3)
Complexed With Methotrexate And Urea
pdb|1DDR|B Chain B, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3)
Complexed With Methotrexate And Urea
pdb|3DAU|A Chain A, Crystal Structure Of The Ternary Mtx Nadph Complex Of
Escherichia Coli Dihydrofolate Reductase
pdb|3K74|A Chain A, Disruption Of Protein Dynamics By An Allosteric Effector
Antibody
Length = 159
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 41 PNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 72
P +L P TDD+ WV+ + + I CG
Sbjct: 55 PGRKNIILSSQPGTDDRVTWVKSVDEAIAACG 86
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 108 PNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 139
P +L P TDD+ WV+ + + I CG
Sbjct: 55 PGRKNIILSSQPGTDDRVTWVKSVDEAIAACG 86
>pdb|2INQ|B Chain B, Neutron Crystal Structure Of Escherichia Coli
Dihydrofolate Reductase Bound To The Anti-Cancer Drug,
Methotrexate
Length = 159
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 52 PSTDDQKLWVQRLSKKIQKCG 72
P TDD+ WV+ + + I CG
Sbjct: 66 PGTDDRVTWVKSVDEAIAACG 86
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 119 PSTDDQKLWVQRLSKKIQKCG 139
P TDD+ WV+ + + I CG
Sbjct: 66 PGTDDRVTWVKSVDEAIAACG 86
>pdb|1DRA|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|1DRA|B Chain B, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
Length = 159
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 52 PSTDDQKLWVQRLSKKIQKCG 72
P TDD+ WV+ + + I CG
Sbjct: 66 PGTDDRVTWVKSVDEAIAACG 86
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 119 PSTDDQKLWVQRLSKKIQKCG 139
P TDD+ WV+ + + I CG
Sbjct: 66 PGTDDRVTWVKSVDEAIAACG 86
>pdb|1DHI|A Chain A, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
pdb|1DHI|B Chain B, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
Length = 159
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 41 PNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 72
P +L P TDD+ WV+ + + I CG
Sbjct: 55 PGRKNIILSSQPGTDDRVTWVKSVDEAIAACG 86
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 108 PNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 139
P +L P TDD+ WV+ + + I CG
Sbjct: 55 PGRKNIILSSQPGTDDRVTWVKSVDEAIAACG 86
>pdb|4DFR|A Chain A, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
pdb|4DFR|B Chain B, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
pdb|1TDR|A Chain A, Expression, Characterization, And Crystallographic
Analysis Of Telluromethionyl Dihydrofolate Reductase
pdb|1TDR|B Chain B, Expression, Characterization, And Crystallographic
Analysis Of Telluromethionyl Dihydrofolate Reductase
Length = 159
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 41 PNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 72
P +L P TDD+ WV+ + + I CG
Sbjct: 55 PGRKNIILSSQPGTDDRVTWVKSVDEAIAACG 86
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 108 PNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 139
P +L P TDD+ WV+ + + I CG
Sbjct: 55 PGRKNIILSSQPGTDDRVTWVKSVDEAIAACG 86
>pdb|3QL0|A Chain A, Crystal Structure Of N23ppS148A MUTANT OF E. COLI
DIHYDROFOLATE Reductase
Length = 160
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 52 PSTDDQKLWVQRLSKKIQKCG 72
P TDD+ WV+ + + I CG
Sbjct: 67 PGTDDRVTWVKSVDEAIAACG 87
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 119 PSTDDQKLWVQRLSKKIQKCG 139
P TDD+ WV+ + + I CG
Sbjct: 67 PGTDDRVTWVKSVDEAIAACG 87
>pdb|1DHJ|A Chain A, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
pdb|1DHJ|B Chain B, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
Length = 159
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 52 PSTDDQKLWVQRLSKKIQKCG 72
P TDD+ WV+ + + I CG
Sbjct: 66 PGTDDRVTWVKSVDEAIAACG 86
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 119 PSTDDQKLWVQRLSKKIQKCG 139
P TDD+ WV+ + + I CG
Sbjct: 66 PGTDDRVTWVKSVDEAIAACG 86
>pdb|2LUL|A Chain A, Solution Nmr Structure Of Ph Domain Of Tyrosine-Protein
Kinase Tec From Homo Sapiens, Northeast Structural
Genomics Consortium (Nesg) Target Hr3504c
Length = 164
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 111 AKEMLLLAPSTDDQKLWVQRLSKKIQKCGYKANTLSDGVKISPREKTDPS 160
A + + APS + LWV++L ++I+ N + +K P+ TD S
Sbjct: 96 ANTLYIFAPSPQSRDLWVKKLKEEIK------NNNNIMIKYHPKFWTDGS 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,888,346
Number of Sequences: 62578
Number of extensions: 181876
Number of successful extensions: 371
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 28
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)