RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14437
(160 letters)
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 35.0 bits (80), Expect = 0.002
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 40 DPNSAKEMLLLAPSTDDQKLWVQRLSKKIQK 70
+SAK +LLLA ST++Q+ WV RL KKI K
Sbjct: 86 GISSAKNLLLLANSTEEQQKWVSRLVKKIPK 116
Score = 35.0 bits (80), Expect = 0.002
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 107 DPNSAKEMLLLAPSTDDQKLWVQRLSKKIQK 137
+SAK +LLLA ST++Q+ WV RL KKI K
Sbjct: 86 GISSAKNLLLLANSTEEQQKWVSRLVKKIPK 116
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 84
Score = 33.6 bits (76), Expect = 0.005
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 15 RCRIKVHKDHLNGKEEAIAPCKLHCD 40
RC IK HKDH++ KEE IAPCK++ D
Sbjct: 59 RCHIKCHKDHMDKKEEIIAPCKVYYD 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.040
Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 42/121 (34%)
Query: 75 ANTLSDG-VKISPRPKDHLNGKEEAIAPCKL----------HCDPNSAK---EMLLLA-- 118
A+ L + KI P P + +E P +L +P+ ++L L
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 119 -------------------PSTDDQKLWVQRLSKKIQKCGYKANTLSDGVKISPREKTDP 159
+D L +K++ K A ++ P +K
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTL---VKTKELIKNYITARIMAK----RPFDKKSN 142
Query: 160 S 160
S
Sbjct: 143 S 143
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 28.4 bits (63), Expect = 0.59
Identities = 9/82 (10%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 56 DQKLWVQRLSKKIQKCGYKANTLSDGVKISPRPKDHLNGKEEAIAPCKLHCDPNSAKEML 115
L + S ++ Y+ G+ ++ E + C ++ + ++
Sbjct: 53 SSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLD-------EIEGSDCMFEITGSTVERIV 105
Query: 116 LLAPSTDDQKLWVQRLSKKIQK 137
+ + D + W+++L++ +
Sbjct: 106 VHCNNNQDFQEWMEQLNRLTKS 127
Score = 27.2 bits (60), Expect = 1.5
Identities = 4/37 (10%), Positives = 18/37 (48%)
Query: 34 PCKLHCDPNSAKEMLLLAPSTDDQKLWVQRLSKKIQK 70
C ++ + +++ + D + W+++L++ +
Sbjct: 91 DCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKS 127
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 26.6 bits (59), Expect = 3.6
Identities = 7/69 (10%), Positives = 25/69 (36%)
Query: 1 MHKLSVLNFNVTPIRCRIKVHKDHLNGKEEAIAPCKLHCDPNSAKEMLLLAPSTDDQKLW 60
+ L++ + +R + N + + + ++ L A T +++ W
Sbjct: 278 VKDLTLEDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQW 337
Query: 61 VQRLSKKIQ 69
+ + + +
Sbjct: 338 LNCIRQAKE 346
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 26.5 bits (58), Expect = 3.9
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 49 LLAPSTDDQKLWVQRLSKKIQKCGYKANTLSDGVKISPRPKDHLNGKE-EAIAPCKLHCD 107
L+A S +D W LS+ + + D L+ +++
Sbjct: 135 LIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQNAVGTLDVGLIDSVCASDSPDR 194
Query: 108 PNSAKE------MLLLAPSTDDQKLWVQRLSKK 134
PNS + A + ++ W+ L +
Sbjct: 195 PNSFVIITANRVLHCNADTPEEMHHWITLLQRS 227
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 26.4 bits (58), Expect = 4.7
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 55 DDQKLWVQRLSKK-IQKCGYKANTLSDGVKISPRPKDHLNG-KEEAIAPCK-----LHCD 107
+D + +Q+ +K + KC K S K + P LN ++A K +
Sbjct: 319 EDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATDKRAFFIICTS 378
Query: 108 PNSAKEMLLL-APSTDDQKLWVQRLSKKIQKC 138
++ L A ++ D+ W++ L + ++
Sbjct: 379 KLGPPQIYELVALTSSDKNTWMELLEEAVRNA 410
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR
{Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A
2ggp_B
Length = 72
Score = 24.9 bits (55), Expect = 4.9
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 56 DQKLWVQRLSKKIQKCGYKANTLSD 80
D ++ + + I+ CG+ L D
Sbjct: 47 DNEVTADSIKEIIEDCGFDCEILRD 71
Score = 24.9 bits (55), Expect = 4.9
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 123 DQKLWVQRLSKKIQKCGYKANTLSD 147
D ++ + + I+ CG+ L D
Sbjct: 47 DNEVTADSIKEIIEDCGFDCEILRD 71
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like
fold, ATP- binding, ethylene signaling pathway,
hydrolase, ION transport; 1.70A {Arabidopsis thaliana}
Length = 74
Score = 24.9 bits (55), Expect = 5.2
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 55 DDQKLWVQRLSKKIQKCGYKANTLSD 80
D + + + ++I+ G++A L++
Sbjct: 47 DPNLVKEEDIKEEIEDAGFEAEILAE 72
Score = 24.9 bits (55), Expect = 5.2
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 122 DDQKLWVQRLSKKIQKCGYKANTLSD 147
D + + + ++I+ G++A L++
Sbjct: 47 DPNLVKEEDIKEEIEDAGFEAEILAE 72
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 25.8 bits (56), Expect = 5.7
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 37 LHCDPNSAKEMLLLAPSTDDQKLWVQRLSKKIQKC 71
+ + + + A S +++ W+Q + I
Sbjct: 140 ISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTL 174
Score = 25.8 bits (56), Expect = 5.7
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 104 LHCDPNSAKEMLLLAPSTDDQKLWVQRLSKKIQKC 138
+ + + + A S +++ W+Q + I
Sbjct: 140 ISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTL 174
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 25.7 bits (56), Expect = 8.1
Identities = 10/84 (11%), Positives = 30/84 (35%)
Query: 55 DDQKLWVQRLSKKIQKCGYKANTLSDGVKISPRPKDHLNGKEEAIAPCKLHCDPNSAKEM 114
D Q ++ ++ + YK DG+++ +I +
Sbjct: 359 DHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSH 418
Query: 115 LLLAPSTDDQKLWVQRLSKKIQKC 138
LL + ++ W++ +++ ++
Sbjct: 419 LLCTRKPEQKQRWLKAFAREREQV 442
>1jww_A Potential copper-transporting ATPase;
beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR
{Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Length = 80
Score = 24.6 bits (54), Expect = 8.3
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 55 DDQKLWVQRLSKKIQKCGYKANTLSDGVKISPR 87
+ ++ V L + + K GYK + I R
Sbjct: 48 NPKEASVSDLKEAVDKLGYKLKLKGEQDSIEGR 80
Score = 24.6 bits (54), Expect = 8.3
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 122 DDQKLWVQRLSKKIQKCGYKANTLSDGVKISPR 154
+ ++ V L + + K GYK + I R
Sbjct: 48 NPKEASVSDLKEAVDKLGYKLKLKGEQDSIEGR 80
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 25.5 bits (56), Expect = 8.7
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 40 DPNSAKEMLLLAPSTDDQKLWVQRLSKKIQK 70
P S +++L A S ++++ W++ + + IQ+
Sbjct: 279 TPTSDNKIVLKASSIENKQDWIKHIREVIQE 309
Score = 25.5 bits (56), Expect = 8.7
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 107 DPNSAKEMLLLAPSTDDQKLWVQRLSKKIQK 137
P S +++L A S ++++ W++ + + IQ+
Sbjct: 279 TPTSDNKIVLKASSIENKQDWIKHIREVIQE 309
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding,
metal selectivity, ferredoxin fold, ATP-binding,
hydrolase; NMR {Arabidopsis thaliana}
Length = 95
Score = 24.4 bits (53), Expect = 9.5
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 55 DDQKLWVQRLSKKIQKCGYKANTLSDG 81
D + +++K + + +AN +G
Sbjct: 61 DSLLISPFQIAKALNEARLEANVRVNG 87
Score = 24.4 bits (53), Expect = 9.5
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 122 DDQKLWVQRLSKKIQKCGYKANTLSDG 148
D + +++K + + +AN +G
Sbjct: 61 DSLLISPFQIAKALNEARLEANVRVNG 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.400
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,328,581
Number of extensions: 121417
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 60
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)