RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14437
(160 letters)
>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and
3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens)
[TaxId: 9606]}
Length = 100
Score = 25.1 bits (54), Expect = 2.5
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 38 HCDPNSAKEMLLLAPSTDDQKLWVQRLSKKIQK 70
C + L A + + W++ L K+ +
Sbjct: 67 FCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ 99
Score = 25.1 bits (54), Expect = 2.5
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 105 HCDPNSAKEMLLLAPSTDDQKLWVQRLSKKIQK 137
C + L A + + W++ L K+ +
Sbjct: 67 FCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ 99
>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 24.9 bits (53), Expect = 2.9
Identities = 4/57 (7%), Positives = 17/57 (29%)
Query: 13 PIRCRIKVHKDHLNGKEEAIAPCKLHCDPNSAKEMLLLAPSTDDQKLWVQRLSKKIQ 69
+R + + + ++ L A + ++ W++ + +
Sbjct: 48 HLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASR 104
>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal
domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Length = 94
Score = 24.4 bits (53), Expect = 3.2
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 49 LLAPSTDDQKLWVQRLSKKIQKCG 72
+++ ++Q+ + RL +Q C
Sbjct: 56 IISNILNEQESLIHRLQNGLQDCA 79
Score = 24.4 bits (53), Expect = 3.2
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 116 LLAPSTDDQKLWVQRLSKKIQKCG 139
+++ ++Q+ + RL +Q C
Sbjct: 56 IISNILNEQESLIHRLQNGLQDCA 79
>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 117
Score = 24.6 bits (52), Expect = 4.6
Identities = 5/55 (9%), Positives = 12/55 (21%)
Query: 16 CRIKVHKDHLNGKEEAIAPCKLHCDPNSAKEMLLLAPSTDDQKLWVQRLSKKIQK 70
G + + + + A + WV R+ +
Sbjct: 58 VEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSS 112
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 99
Score = 23.9 bits (52), Expect = 5.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 42 NSAKEMLLLAPSTDDQKLWVQRLSKKIQKCGYKA 75
S K + A S D K+ ++ ++ +QK G+ A
Sbjct: 59 ASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPA 92
Score = 23.9 bits (52), Expect = 5.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 109 NSAKEMLLLAPSTDDQKLWVQRLSKKIQKCGYKA 142
S K + A S D K+ ++ ++ +QK G+ A
Sbjct: 59 ASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPA 92
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 24.5 bits (52), Expect = 5.7
Identities = 10/59 (16%), Positives = 19/59 (32%)
Query: 14 IRCRIKVHKDHLNGKEEAIAPCKLHCDPNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 72
+ + +++ C + A S D + WVQ+L +Q G
Sbjct: 151 FAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLG 209
Score = 24.5 bits (52), Expect = 7.2
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 101 PCKLHCDPNSAKEMLLLAPSTDDQKLWVQRLSKKIQKCG 139
C + A S D + WVQ+L +Q G
Sbjct: 171 DCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLG 209
>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange
factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId:
9606]}
Length = 140
Score = 24.3 bits (52), Expect = 6.5
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 40 DPNSAKEMLLLAPSTDDQKLWVQRLSKKIQ 69
+ L+A ++ D+ W++ L + ++
Sbjct: 109 KLGPPQIYELVALTSSDKNTWMELLEEAVR 138
Score = 24.3 bits (52), Expect = 6.5
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 107 DPNSAKEMLLLAPSTDDQKLWVQRLSKKIQ 136
+ L+A ++ D+ W++ L + ++
Sbjct: 109 KLGPPQIYELVALTSSDKNTWMELLEEAVR 138
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 75
Score = 23.1 bits (50), Expect = 7.7
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 16 CRIKVHKDHLNGKEEAIAPCKLHCDPNSAKEMLLLA 51
CR ++ K L E+ + K + + ++ A
Sbjct: 1 CRERIEK-DLELLEKNLMEMKSIKLSDDEEAVVERA 35
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 72
Score = 23.2 bits (50), Expect = 8.9
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 56 DQKLWVQRLSKKIQKCGYKANTLSD 80
D ++ + + I+ CG+ L D
Sbjct: 47 DNEVTADSIKEIIEDCGFDCEILRD 71
Score = 23.2 bits (50), Expect = 8.9
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 123 DQKLWVQRLSKKIQKCGYKANTLSD 147
D ++ + + I+ CG+ L D
Sbjct: 47 DNEVTADSIKEIIEDCGFDCEILRD 71
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 22.9 bits (49), Expect = 9.1
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 55 DDQKLWVQRLSKKIQKCGYKANTLSD 80
D + L I+ G+ A TLSD
Sbjct: 48 DPLLTSPETLRGAIEDMGFDA-TLSD 72
Score = 22.9 bits (49), Expect = 9.1
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 122 DDQKLWVQRLSKKIQKCGYKANTLSD 147
D + L I+ G+ A TLSD
Sbjct: 48 DPLLTSPETLRGAIEDMGFDA-TLSD 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.400
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 588,256
Number of extensions: 24888
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 34
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)