Query psy14439
Match_columns 245
No_of_seqs 266 out of 1236
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 19:52:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1319|consensus 100.0 2.7E-50 5.9E-55 337.9 18.8 210 25-242 11-226 (229)
2 KOG3582|consensus 99.9 1.9E-25 4E-30 216.7 7.3 165 78-244 650-828 (856)
3 KOG1318|consensus 99.7 2.1E-15 4.5E-20 141.7 16.2 100 71-173 225-327 (411)
4 PF00010 HLH: Helix-loop-helix 99.6 3.3E-15 7.2E-20 103.4 6.6 55 79-135 1-55 (55)
5 cd00083 HLH Helix-loop-helix d 99.5 6.2E-14 1.3E-18 97.8 7.1 58 77-138 2-59 (60)
6 smart00353 HLH helix loop heli 99.4 1.6E-12 3.6E-17 88.8 6.4 52 84-139 1-52 (53)
7 KOG2483|consensus 99.2 1.5E-10 3.3E-15 102.2 11.2 82 77-163 57-139 (232)
8 KOG4304|consensus 98.9 7.9E-10 1.7E-14 98.9 3.9 71 74-144 27-98 (250)
9 KOG0561|consensus 98.9 4.4E-09 9.5E-14 95.1 7.0 76 76-156 57-132 (373)
10 KOG2588|consensus 98.8 4.2E-09 9E-14 107.0 6.3 67 77-149 274-340 (953)
11 KOG3561|consensus 98.8 5.7E-09 1.2E-13 105.6 6.3 63 72-137 13-75 (803)
12 KOG3960|consensus 98.4 9.7E-06 2.1E-10 72.0 13.4 67 73-144 112-178 (284)
13 KOG4029|consensus 98.3 2.3E-06 5E-11 75.4 8.3 68 74-144 104-171 (228)
14 PLN03217 transcription factor 98.3 2.5E-06 5.5E-11 64.0 6.0 59 92-151 20-78 (93)
15 KOG3910|consensus 98.0 3.1E-05 6.7E-10 74.6 9.4 66 72-140 519-584 (632)
16 KOG4447|consensus 97.7 3.6E-05 7.8E-10 63.8 4.4 54 78-136 77-130 (173)
17 KOG3898|consensus 97.0 0.002 4.4E-08 57.9 6.8 57 76-136 69-125 (254)
18 KOG4395|consensus 96.9 0.0013 2.8E-08 58.7 4.9 59 74-136 169-227 (285)
19 COG3074 Uncharacterized protei 92.9 0.65 1.4E-05 33.9 6.9 41 124-164 13-53 (79)
20 PF06005 DUF904: Protein of un 92.9 0.64 1.4E-05 34.1 7.1 40 124-163 13-52 (72)
21 smart00338 BRLZ basic region l 92.1 0.92 2E-05 31.9 6.9 40 126-165 23-62 (65)
22 KOG3119|consensus 92.0 6.3 0.00014 35.7 13.9 36 134-169 220-255 (269)
23 PRK15422 septal ring assembly 91.0 1.3 2.9E-05 32.9 6.9 37 124-160 13-49 (79)
24 KOG3558|consensus 90.9 0.27 5.8E-06 49.8 4.1 53 77-132 44-96 (768)
25 PF00170 bZIP_1: bZIP transcri 90.8 1.9 4E-05 30.3 7.4 37 128-164 25-61 (64)
26 KOG3582|consensus 90.5 0.044 9.5E-07 55.3 -1.7 69 76-149 784-852 (856)
27 KOG0709|consensus 89.2 0.52 1.1E-05 45.7 4.4 86 117-202 260-352 (472)
28 KOG4447|consensus 86.7 1.2 2.7E-05 37.2 4.6 76 86-166 29-104 (173)
29 PF10883 DUF2681: Protein of u 85.7 5.5 0.00012 30.3 7.3 35 131-165 25-59 (87)
30 PF07716 bZIP_2: Basic region 82.8 5.7 0.00012 26.9 5.9 29 128-156 24-52 (54)
31 KOG4005|consensus 82.7 32 0.00069 31.0 11.9 69 73-154 53-122 (292)
32 TIGR02894 DNA_bind_RsfA transc 82.1 7.3 0.00016 32.9 7.3 43 121-163 79-131 (161)
33 KOG3560|consensus 80.9 1.3 2.8E-05 44.1 2.8 43 87-132 33-75 (712)
34 PRK14127 cell division protein 80.6 4.6 0.0001 31.9 5.4 38 123-160 31-68 (109)
35 PRK00888 ftsB cell division pr 79.6 5 0.00011 31.3 5.3 41 129-169 34-74 (105)
36 KOG4571|consensus 79.3 32 0.0007 31.7 11.1 32 128-159 254-285 (294)
37 PF04977 DivIC: Septum formati 77.9 9.7 0.00021 27.1 6.1 37 131-167 26-62 (80)
38 KOG3559|consensus 77.1 1.8 4E-05 41.6 2.5 46 85-133 7-52 (598)
39 PF00170 bZIP_1: bZIP transcri 76.6 15 0.00032 25.6 6.6 57 76-158 6-62 (64)
40 PF04977 DivIC: Septum formati 76.4 6.3 0.00014 28.1 4.7 36 127-162 15-50 (80)
41 PF07412 Geminin: Geminin; In 75.6 8 0.00017 33.8 5.9 45 121-165 117-161 (200)
42 smart00340 HALZ homeobox assoc 74.8 6.7 0.00015 25.9 3.9 26 133-158 9-34 (44)
43 PRK13922 rod shape-determining 74.5 11 0.00023 33.9 6.7 42 125-166 65-109 (276)
44 COG3074 Uncharacterized protei 74.5 29 0.00063 25.5 7.5 50 118-167 17-70 (79)
45 PF06005 DUF904: Protein of un 74.4 17 0.00036 26.6 6.5 33 131-163 27-59 (72)
46 PF14775 NYD-SP28_assoc: Sperm 74.0 28 0.0006 24.5 7.3 57 98-162 3-59 (60)
47 PF10883 DUF2681: Protein of u 74.0 29 0.00063 26.4 7.8 44 125-168 12-55 (87)
48 PF12329 TMF_DNA_bd: TATA elem 73.0 15 0.00033 26.8 6.0 39 129-167 33-71 (74)
49 PF13815 Dzip-like_N: Iguana/D 72.1 26 0.00055 27.6 7.6 82 80-164 14-108 (118)
50 PF04728 LPP: Lipoprotein leuc 71.8 22 0.00048 24.8 6.2 30 131-160 12-41 (56)
51 PRK10884 SH3 domain-containing 71.5 16 0.00035 31.9 6.9 43 121-163 124-166 (206)
52 PRK14127 cell division protein 71.3 18 0.00038 28.6 6.4 45 125-169 26-70 (109)
53 PF07544 Med9: RNA polymerase 69.4 12 0.00027 27.8 4.9 26 138-163 54-79 (83)
54 TIGR02209 ftsL_broad cell divi 69.2 34 0.00074 24.8 7.3 43 126-169 28-70 (85)
55 smart00338 BRLZ basic region l 69.1 28 0.0006 24.3 6.5 29 130-158 34-62 (65)
56 PF01920 Prefoldin_2: Prefoldi 68.9 14 0.00031 27.7 5.3 72 93-168 30-101 (106)
57 PF14916 CCDC92: Coiled-coil d 68.0 9.2 0.0002 27.1 3.7 47 120-171 4-51 (60)
58 PRK00888 ftsB cell division pr 67.5 16 0.00034 28.5 5.4 33 131-163 29-61 (105)
59 KOG2021|consensus 67.4 14 0.0003 38.5 6.2 76 120-222 18-93 (980)
60 PF07334 IFP_35_N: Interferon- 66.8 13 0.00028 27.6 4.5 26 131-156 2-27 (76)
61 PF07851 TMPIT: TMPIT-like pro 66.7 55 0.0012 30.8 9.7 126 94-234 23-173 (330)
62 PF05377 FlaC_arch: Flagella a 66.5 30 0.00065 24.1 5.9 25 131-155 16-40 (55)
63 smart00787 Spc7 Spc7 kinetocho 66.2 53 0.0011 30.5 9.5 58 90-155 180-237 (312)
64 PF04880 NUDE_C: NUDE protein, 64.7 6.8 0.00015 33.2 3.0 35 125-159 10-47 (166)
65 PF06156 DUF972: Protein of un 64.7 30 0.00064 27.2 6.4 37 127-163 20-56 (107)
66 PF09789 DUF2353: Uncharacteri 63.1 54 0.0012 30.7 8.8 81 83-163 29-113 (319)
67 PF04728 LPP: Lipoprotein leuc 62.3 44 0.00096 23.3 6.2 33 130-162 4-36 (56)
68 PF05531 NPV_P10: Nucleopolyhe 61.8 32 0.0007 25.4 5.8 49 119-167 18-66 (75)
69 PF10046 BLOC1_2: Biogenesis o 61.3 71 0.0015 24.4 8.0 48 120-167 43-90 (99)
70 TIGR00219 mreC rod shape-deter 61.3 36 0.00079 31.0 7.3 47 124-170 58-111 (283)
71 KOG4196|consensus 60.4 38 0.00082 27.7 6.4 64 84-161 50-113 (135)
72 PF08317 Spc7: Spc7 kinetochor 60.3 87 0.0019 28.9 9.8 19 90-108 185-203 (325)
73 PF05164 ZapA: Cell division p 60.1 63 0.0014 23.4 9.0 56 92-156 28-85 (89)
74 PRK05771 V-type ATP synthase s 60.0 72 0.0016 32.3 9.9 73 88-160 49-124 (646)
75 PRK15422 septal ring assembly 59.2 44 0.00096 24.9 6.1 25 132-156 7-31 (79)
76 PF04102 SlyX: SlyX; InterPro 59.0 24 0.00052 25.3 4.7 32 130-161 19-50 (69)
77 PF06305 DUF1049: Protein of u 58.4 12 0.00025 26.2 2.9 24 132-155 44-67 (68)
78 PHA03386 P10 fibrous body prot 58.2 54 0.0012 25.3 6.6 50 118-167 1-60 (94)
79 PRK09413 IS2 repressor TnpA; R 57.7 25 0.00054 27.6 5.0 28 131-158 73-100 (121)
80 PF10211 Ax_dynein_light: Axon 57.7 68 0.0015 27.5 8.0 19 88-106 58-76 (189)
81 PF07407 Seadorna_VP6: Seadorn 57.3 16 0.00035 34.3 4.3 108 127-234 30-180 (420)
82 PF15233 SYCE1: Synaptonemal c 57.1 48 0.001 27.1 6.5 41 127-167 11-58 (134)
83 TIGR02209 ftsL_broad cell divi 56.9 68 0.0015 23.1 7.0 31 131-161 26-56 (85)
84 cd07429 Cby_like Chibby, a nuc 56.8 33 0.00071 27.1 5.4 33 128-160 71-103 (108)
85 PF06698 DUF1192: Protein of u 56.4 46 0.001 23.5 5.5 28 131-158 23-50 (59)
86 PF02183 HALZ: Homeobox associ 56.2 28 0.00061 23.1 4.2 24 133-156 16-39 (45)
87 KOG3584|consensus 55.6 16 0.00034 33.9 3.9 31 127-157 310-340 (348)
88 PF04568 IATP: Mitochondrial A 55.3 39 0.00084 26.3 5.5 10 148-157 88-97 (100)
89 TIGR02894 DNA_bind_RsfA transc 54.1 54 0.0012 27.7 6.6 30 129-158 104-133 (161)
90 PF09340 NuA4: Histone acetylt 53.7 32 0.0007 25.5 4.7 28 131-158 4-31 (80)
91 PF04880 NUDE_C: NUDE protein, 53.5 11 0.00024 31.9 2.5 40 118-158 13-52 (166)
92 COG2919 Septum formation initi 53.4 1.1E+02 0.0024 24.1 8.6 24 133-156 61-84 (117)
93 PF12709 Kinetocho_Slk19: Cent 53.0 51 0.0011 25.1 5.7 36 119-156 34-69 (87)
94 PF10224 DUF2205: Predicted co 52.8 74 0.0016 23.8 6.5 25 131-155 25-49 (80)
95 PF10393 Matrilin_ccoil: Trime 52.7 46 0.00099 22.4 4.8 30 123-152 17-46 (47)
96 COG3883 Uncharacterized protei 52.7 61 0.0013 29.6 7.2 38 129-166 66-103 (265)
97 TIGR03752 conj_TIGR03752 integ 52.7 52 0.0011 32.4 7.2 36 123-158 60-95 (472)
98 cd00632 Prefoldin_beta Prefold 52.6 88 0.0019 23.9 7.2 63 94-156 32-97 (105)
99 PF06717 DUF1202: Protein of u 52.1 88 0.0019 28.9 8.0 65 129-197 138-202 (308)
100 PRK14011 prefoldin subunit alp 51.8 99 0.0022 25.5 7.8 36 123-158 85-124 (144)
101 PF08161 NUC173: NUC173 domain 51.2 26 0.00056 30.3 4.4 48 189-239 147-197 (198)
102 PF02183 HALZ: Homeobox associ 50.8 71 0.0015 21.1 5.6 33 133-165 9-41 (45)
103 KOG2264|consensus 50.3 56 0.0012 33.2 7.0 22 218-239 243-264 (907)
104 PRK03947 prefoldin subunit alp 50.1 64 0.0014 25.8 6.4 34 129-162 6-39 (140)
105 PRK13169 DNA replication intia 49.9 73 0.0016 25.2 6.4 33 128-160 21-53 (110)
106 PF13747 DUF4164: Domain of un 49.8 1.1E+02 0.0024 23.1 7.2 61 93-162 12-72 (89)
107 KOG2264|consensus 49.3 48 0.001 33.7 6.4 30 130-159 94-123 (907)
108 PF07716 bZIP_2: Basic region 48.9 80 0.0017 21.2 6.5 27 132-158 21-47 (54)
109 TIGR01242 26Sp45 26S proteasom 48.8 44 0.00095 31.1 5.9 40 134-173 4-43 (364)
110 PF09006 Surfac_D-trimer: Lung 48.7 60 0.0013 21.8 4.8 21 132-152 2-22 (46)
111 PF05700 BCAS2: Breast carcino 48.2 60 0.0013 28.4 6.4 38 129-166 136-173 (221)
112 KOG4368|consensus 48.2 80 0.0017 32.1 7.7 36 206-241 116-151 (757)
113 PF11932 DUF3450: Protein of u 47.8 50 0.0011 29.2 5.9 34 129-162 70-103 (251)
114 PF04678 DUF607: Protein of un 47.6 18 0.0004 30.6 2.9 83 118-200 46-131 (180)
115 PF11598 COMP: Cartilage oligo 47.6 75 0.0016 21.2 5.2 34 130-163 9-42 (45)
116 PF04111 APG6: Autophagy prote 47.4 85 0.0018 29.1 7.5 37 127-163 48-84 (314)
117 KOG0709|consensus 47.2 1.3E+02 0.0027 29.7 8.7 54 84-158 262-315 (472)
118 COG1382 GimC Prefoldin, chaper 47.2 1.1E+02 0.0024 24.6 7.1 65 94-158 39-106 (119)
119 PRK13922 rod shape-determining 46.8 1.1E+02 0.0023 27.4 7.9 31 136-166 69-99 (276)
120 PRK11637 AmiB activator; Provi 46.7 1.2E+02 0.0026 29.0 8.6 26 132-157 92-117 (428)
121 PF11544 Spc42p: Spindle pole 46.7 63 0.0014 24.0 5.2 32 128-159 4-35 (76)
122 TIGR00293 prefoldin, archaeal 46.4 61 0.0013 25.3 5.6 33 130-162 7-39 (126)
123 KOG4196|consensus 46.4 1.2E+02 0.0025 24.9 7.1 27 133-159 78-104 (135)
124 PF07989 Microtub_assoc: Micro 46.2 73 0.0016 23.3 5.5 31 130-160 37-67 (75)
125 PF05565 Sipho_Gp157: Siphovir 46.0 96 0.0021 25.8 7.0 44 125-168 43-86 (162)
126 PF05103 DivIVA: DivIVA protei 46.0 11 0.00024 29.6 1.2 41 124-164 27-67 (131)
127 PF08654 DASH_Dad2: DASH compl 45.9 95 0.0021 24.2 6.4 50 128-193 13-62 (103)
128 PF12325 TMF_TATA_bd: TATA ele 45.8 91 0.002 24.9 6.5 26 121-146 15-40 (120)
129 PF06698 DUF1192: Protein of u 45.2 70 0.0015 22.5 5.0 23 138-160 23-45 (59)
130 PF01166 TSC22: TSC-22/dip/bun 45.2 57 0.0012 23.0 4.5 23 133-155 18-40 (59)
131 cd00584 Prefoldin_alpha Prefol 44.9 67 0.0014 25.2 5.6 40 128-167 5-44 (129)
132 PF02996 Prefoldin: Prefoldin 44.8 78 0.0017 24.3 5.9 39 124-165 75-113 (120)
133 PF05103 DivIVA: DivIVA protei 44.7 14 0.00029 29.0 1.6 39 127-165 23-61 (131)
134 COG4026 Uncharacterized protei 44.6 1.1E+02 0.0023 27.6 7.2 35 134-168 154-188 (290)
135 PHA01750 hypothetical protein 44.5 1.1E+02 0.0024 22.2 6.0 26 142-167 41-66 (75)
136 PF11690 DUF3287: Protein of u 44.4 83 0.0018 24.9 5.9 31 125-155 38-68 (109)
137 PRK11637 AmiB activator; Provi 44.2 90 0.002 29.8 7.4 30 127-156 94-123 (428)
138 PF14389 Lzipper-MIP1: Leucine 44.1 61 0.0013 24.4 5.0 59 83-156 23-81 (88)
139 PF14197 Cep57_CLD_2: Centroso 43.8 39 0.00085 24.4 3.7 13 140-152 51-63 (69)
140 PF04048 Sec8_exocyst: Sec8 ex 43.7 1.7E+02 0.0037 23.6 8.0 81 76-165 42-122 (142)
141 PF11932 DUF3450: Protein of u 43.7 1.1E+02 0.0024 27.0 7.4 23 127-149 75-97 (251)
142 KOG0971|consensus 43.1 1.6E+02 0.0035 31.7 9.2 47 123-169 397-443 (1243)
143 PF04859 DUF641: Plant protein 42.5 66 0.0014 26.2 5.3 76 83-163 49-128 (131)
144 PRK15396 murein lipoprotein; P 42.5 1.1E+02 0.0024 22.7 6.0 29 131-159 27-55 (78)
145 KOG4005|consensus 42.5 2.6E+02 0.0057 25.3 9.8 79 71-158 65-147 (292)
146 PTZ00454 26S protease regulato 42.5 87 0.0019 30.0 6.9 43 131-173 24-66 (398)
147 PF14197 Cep57_CLD_2: Centroso 42.4 80 0.0017 22.8 5.2 26 123-148 41-66 (69)
148 COG1256 FlgK Flagellar hook-as 42.4 1.6E+02 0.0034 29.7 8.9 42 117-158 130-185 (552)
149 PRK14872 rod shape-determining 42.2 92 0.002 29.4 6.9 60 86-159 28-87 (337)
150 PF08781 DP: Transcription fac 42.2 85 0.0019 26.0 5.9 33 131-163 3-35 (142)
151 PF07407 Seadorna_VP6: Seadorn 42.0 44 0.00096 31.5 4.6 84 136-226 32-116 (420)
152 KOG3048|consensus 41.8 93 0.002 26.0 6.0 57 132-188 16-87 (153)
153 COG2433 Uncharacterized conser 41.7 63 0.0014 32.9 5.9 29 130-158 430-458 (652)
154 COG2433 Uncharacterized conser 41.5 68 0.0015 32.6 6.1 38 129-166 422-459 (652)
155 PRK10803 tol-pal system protei 41.3 76 0.0017 28.5 6.1 25 132-156 57-81 (263)
156 PF15458 NTR2: Nineteen comple 41.0 2.7E+02 0.0058 25.0 12.2 44 123-166 209-252 (254)
157 PF11382 DUF3186: Protein of u 40.7 70 0.0015 29.5 5.8 34 132-165 35-68 (308)
158 PF14988 DUF4515: Domain of un 40.6 1.3E+02 0.0028 26.2 7.2 38 127-164 154-191 (206)
159 KOG3119|consensus 40.4 55 0.0012 29.6 5.0 40 125-164 218-257 (269)
160 TIGR00293 prefoldin, archaeal 40.4 1E+02 0.0022 24.0 6.1 41 123-166 83-123 (126)
161 PF04420 CHD5: CHD5-like prote 40.2 1.3E+02 0.0029 24.9 7.0 43 126-168 37-91 (161)
162 PF01166 TSC22: TSC-22/dip/bun 40.1 53 0.0012 23.2 3.7 26 135-160 13-38 (59)
163 TIGR00219 mreC rod shape-deter 39.5 1.2E+02 0.0027 27.5 7.2 24 137-160 67-90 (283)
164 PF04999 FtsL: Cell division p 39.4 83 0.0018 23.5 5.2 38 129-167 42-79 (97)
165 COG1730 GIM5 Predicted prefold 39.3 1.1E+02 0.0025 25.3 6.3 37 124-163 92-128 (145)
166 cd01106 HTH_TipAL-Mta Helix-Tu 39.2 97 0.0021 23.4 5.6 26 130-155 74-99 (103)
167 PLN03188 kinesin-12 family pro 39.0 1.4E+02 0.0031 33.0 8.3 71 83-168 1123-1198(1320)
168 PF04849 HAP1_N: HAP1 N-termin 38.6 66 0.0014 30.0 5.2 38 128-165 159-196 (306)
169 PF14282 FlxA: FlxA-like prote 38.6 1.3E+02 0.0028 23.3 6.2 23 88-110 18-40 (106)
170 PF11471 Sugarporin_N: Maltopo 38.2 67 0.0015 22.6 4.1 28 134-161 30-57 (60)
171 PF08172 CASP_C: CASP C termin 37.9 95 0.0021 27.9 6.1 24 135-158 99-122 (248)
172 PF13600 DUF4140: N-terminal d 37.9 76 0.0016 23.9 4.8 26 131-156 72-97 (104)
173 KOG1318|consensus 37.6 59 0.0013 31.5 4.9 51 119-169 280-330 (411)
174 cd00890 Prefoldin Prefoldin is 37.6 1.4E+02 0.0031 23.0 6.4 24 133-156 98-121 (129)
175 TIGR03752 conj_TIGR03752 integ 37.5 1.3E+02 0.0029 29.6 7.4 13 139-151 119-131 (472)
176 PF03980 Nnf1: Nnf1 ; InterPr 37.5 1.2E+02 0.0025 23.3 5.8 32 125-156 76-107 (109)
177 PF06120 Phage_HK97_TLTM: Tail 37.4 1.1E+02 0.0023 28.5 6.4 72 83-168 40-113 (301)
178 PF10473 CENP-F_leu_zip: Leuci 37.4 1.6E+02 0.0035 24.2 6.9 71 92-170 20-93 (140)
179 PF08826 DMPK_coil: DMPK coile 37.4 84 0.0018 22.2 4.5 25 132-156 35-59 (61)
180 PF12958 DUF3847: Protein of u 37.2 1.4E+02 0.0031 22.6 6.0 29 132-160 4-32 (86)
181 PRK01203 prefoldin subunit alp 37.1 1.2E+02 0.0026 24.7 6.0 36 129-164 7-42 (130)
182 PF14645 Chibby: Chibby family 37.0 1.3E+02 0.0029 23.8 6.1 32 131-162 73-104 (116)
183 KOG4343|consensus 36.8 1.4E+02 0.0031 30.1 7.4 35 127-161 300-334 (655)
184 PF13815 Dzip-like_N: Iguana/D 36.7 1.4E+02 0.003 23.4 6.3 28 128-155 86-113 (118)
185 PF07888 CALCOCO1: Calcium bin 36.5 1.4E+02 0.0031 30.0 7.5 40 118-157 135-178 (546)
186 PF08172 CASP_C: CASP C termin 36.5 1.4E+02 0.003 26.8 6.9 18 85-102 82-99 (248)
187 PF10146 zf-C4H2: Zinc finger- 36.3 1.9E+02 0.004 25.8 7.6 7 118-124 49-55 (230)
188 PF06632 XRCC4: DNA double-str 35.9 1.7E+02 0.0037 27.6 7.7 32 123-154 131-162 (342)
189 PF04568 IATP: Mitochondrial A 35.6 1.2E+02 0.0026 23.6 5.5 12 141-152 88-99 (100)
190 KOG2070|consensus 35.4 1.2E+02 0.0026 30.4 6.6 43 127-169 614-656 (661)
191 PF15619 Lebercilin: Ciliary p 35.4 1.8E+02 0.0039 25.1 7.2 40 122-161 5-44 (194)
192 PRK06835 DNA replication prote 35.0 1.7E+02 0.0037 27.3 7.5 68 97-175 27-94 (329)
193 smart00502 BBC B-Box C-termina 35.0 1.9E+02 0.0042 21.6 7.0 27 121-147 42-68 (127)
194 PF08898 DUF1843: Domain of un 34.9 1.1E+02 0.0023 21.2 4.5 35 129-163 17-51 (53)
195 PF05529 Bap31: B-cell recepto 34.9 82 0.0018 26.6 5.0 21 136-156 161-181 (192)
196 PF14193 DUF4315: Domain of un 34.9 1.5E+02 0.0033 22.2 5.8 24 131-154 10-33 (83)
197 cd00584 Prefoldin_alpha Prefol 34.8 1.6E+02 0.0034 23.1 6.3 38 132-169 2-39 (129)
198 PF11853 DUF3373: Protein of u 34.8 41 0.00088 33.3 3.4 20 137-156 32-51 (489)
199 PRK13169 DNA replication intia 34.7 1.6E+02 0.0036 23.2 6.3 39 130-168 16-54 (110)
200 PF12718 Tropomyosin_1: Tropom 34.7 1.8E+02 0.0039 23.8 6.8 14 135-148 27-40 (143)
201 PRK13729 conjugal transfer pil 34.7 1.6E+02 0.0035 29.1 7.4 23 80-102 66-89 (475)
202 COG5509 Uncharacterized small 34.6 1.4E+02 0.0029 21.3 5.1 37 119-155 13-51 (65)
203 PRK00295 hypothetical protein; 34.3 1.6E+02 0.0035 21.0 5.7 26 131-156 21-46 (68)
204 PF02344 Myc-LZ: Myc leucine z 34.1 1.2E+02 0.0025 18.8 4.1 17 140-156 5-21 (32)
205 PF14257 DUF4349: Domain of un 34.0 1.1E+02 0.0024 27.1 5.9 24 143-166 169-192 (262)
206 PF11336 DUF3138: Protein of u 33.9 47 0.001 32.5 3.6 27 128-154 24-50 (514)
207 KOG3540|consensus 33.7 5E+02 0.011 26.0 10.7 62 81-154 253-314 (615)
208 PRK14011 prefoldin subunit alp 33.7 1.8E+02 0.0039 23.9 6.6 40 124-163 5-44 (144)
209 PF05781 MRVI1: MRVI1 protein; 33.7 1.4E+02 0.003 30.0 6.9 29 82-110 221-249 (538)
210 cd00890 Prefoldin Prefoldin is 33.6 1.7E+02 0.0037 22.5 6.3 39 128-166 5-43 (129)
211 TIGR02449 conserved hypothetic 33.5 1.8E+02 0.0039 20.8 7.4 31 125-155 10-40 (65)
212 PRK03992 proteasome-activating 33.3 1.5E+02 0.0034 27.9 7.0 44 130-173 9-52 (389)
213 PF04508 Pox_A_type_inc: Viral 33.2 59 0.0013 18.7 2.5 15 144-158 2-16 (23)
214 PF14071 YlbD_coat: Putative c 33.0 2E+02 0.0042 23.3 6.5 51 118-177 61-111 (124)
215 PF15397 DUF4618: Domain of un 33.0 1.1E+02 0.0023 27.9 5.5 22 135-156 199-220 (258)
216 COG1730 GIM5 Predicted prefold 32.9 1.7E+02 0.0036 24.3 6.3 45 125-169 9-53 (145)
217 PRK04325 hypothetical protein; 32.8 1.4E+02 0.0029 21.8 5.2 24 132-155 26-49 (74)
218 KOG3863|consensus 32.8 80 0.0017 32.1 5.1 29 130-158 519-547 (604)
219 TIGR02338 gimC_beta prefoldin, 32.7 2.3E+02 0.005 21.8 7.1 77 85-166 28-104 (110)
220 PLN02705 beta-amylase 32.7 2.9E+02 0.0063 28.4 8.9 26 77-102 82-107 (681)
221 PF01920 Prefoldin_2: Prefoldi 32.5 2.1E+02 0.0045 21.2 6.7 76 83-158 23-98 (106)
222 PF12017 Tnp_P_element: Transp 32.3 1.5E+02 0.0032 26.5 6.3 39 126-164 15-53 (236)
223 PF14992 TMCO5: TMCO5 family 32.2 1.6E+02 0.0034 27.1 6.6 24 123-146 145-168 (280)
224 KOG0992|consensus 32.2 2.1E+02 0.0045 28.7 7.7 17 34-50 434-450 (613)
225 PF07334 IFP_35_N: Interferon- 32.2 89 0.0019 23.2 4.1 20 139-158 3-22 (76)
226 PF04340 DUF484: Protein of un 32.0 1.9E+02 0.0042 25.0 7.0 22 135-156 46-67 (225)
227 PRK04406 hypothetical protein; 31.9 2E+02 0.0044 21.0 6.0 23 133-155 29-51 (75)
228 PF07061 Swi5: Swi5; InterPro 31.9 1.1E+02 0.0025 22.8 4.7 25 132-156 3-27 (83)
229 PF04111 APG6: Autophagy prote 31.8 1.7E+02 0.0038 27.0 7.0 32 127-158 62-93 (314)
230 PF12999 PRKCSH-like: Glucosid 31.8 94 0.002 26.7 4.7 28 129-156 146-173 (176)
231 PF07889 DUF1664: Protein of u 31.8 2.6E+02 0.0055 22.7 7.0 40 127-166 80-119 (126)
232 cd04776 HTH_GnyR Helix-Turn-He 31.7 1.8E+02 0.004 22.7 6.2 32 132-163 83-114 (118)
233 COG3883 Uncharacterized protei 31.7 1.8E+02 0.0039 26.6 6.8 7 206-212 127-133 (265)
234 PF03285 Paralemmin: Paralemmi 31.5 52 0.0011 30.2 3.3 24 134-157 8-31 (278)
235 PRK11677 hypothetical protein; 31.5 1.6E+02 0.0034 24.1 5.8 36 130-165 30-73 (134)
236 KOG4657|consensus 31.4 1.1E+02 0.0024 27.4 5.2 36 125-160 89-124 (246)
237 PF12240 Angiomotin_C: Angiomo 31.4 1.8E+02 0.004 25.5 6.5 40 118-157 2-42 (205)
238 PRK10884 SH3 domain-containing 31.4 1.4E+02 0.0029 26.1 5.8 37 132-168 128-164 (206)
239 PTZ00454 26S protease regulato 31.3 1.5E+02 0.0032 28.4 6.5 37 127-163 27-63 (398)
240 PF05529 Bap31: B-cell recepto 31.2 84 0.0018 26.5 4.5 19 137-155 155-173 (192)
241 PF11544 Spc42p: Spindle pole 31.0 2.2E+02 0.0048 21.1 6.2 26 130-155 27-52 (76)
242 PF06632 XRCC4: DNA double-str 31.0 1.8E+02 0.0038 27.5 6.9 23 133-155 148-170 (342)
243 PF08317 Spc7: Spc7 kinetochor 31.0 2.2E+02 0.0047 26.3 7.5 16 93-108 167-182 (325)
244 PF04999 FtsL: Cell division p 30.8 2.2E+02 0.0049 21.1 6.9 33 131-163 37-69 (97)
245 PF12709 Kinetocho_Slk19: Cent 30.8 1.7E+02 0.0036 22.3 5.4 34 127-160 47-80 (87)
246 KOG0995|consensus 30.7 1.6E+02 0.0036 29.7 6.8 53 125-177 276-335 (581)
247 PF07544 Med9: RNA polymerase 30.7 1.1E+02 0.0025 22.5 4.5 52 92-152 31-82 (83)
248 PRK00736 hypothetical protein; 30.6 1.8E+02 0.0039 20.7 5.4 26 131-156 21-46 (68)
249 PF15358 TSKS: Testis-specific 30.6 4.7E+02 0.01 25.7 9.6 19 205-223 290-312 (558)
250 PRK03947 prefoldin subunit alp 30.5 2.4E+02 0.0051 22.4 6.8 46 121-166 5-50 (140)
251 KOG4370|consensus 30.5 1.2E+02 0.0026 29.7 5.7 43 131-173 415-457 (514)
252 COG5509 Uncharacterized small 30.4 98 0.0021 22.0 3.8 21 138-158 27-47 (65)
253 COG4026 Uncharacterized protei 30.3 4.1E+02 0.0089 24.0 10.0 33 131-163 144-176 (290)
254 PF02996 Prefoldin: Prefoldin 30.1 1.5E+02 0.0033 22.6 5.4 46 118-163 73-118 (120)
255 PF09006 Surfac_D-trimer: Lung 30.1 1.5E+02 0.0033 19.9 4.5 25 139-163 2-26 (46)
256 PF06156 DUF972: Protein of un 29.8 2.7E+02 0.0059 21.7 7.4 41 129-169 15-55 (107)
257 cd04775 HTH_Cfa-like Helix-Tur 29.8 1.5E+02 0.0032 22.5 5.2 27 139-165 74-100 (102)
258 PF07106 TBPIP: Tat binding pr 29.7 1.4E+02 0.003 24.7 5.5 37 118-155 69-105 (169)
259 PF06295 DUF1043: Protein of u 29.7 1.8E+02 0.0038 23.3 5.8 24 131-154 27-50 (128)
260 TIGR02338 gimC_beta prefoldin, 29.5 2.6E+02 0.0057 21.5 9.2 40 118-157 63-102 (110)
261 TIGR02473 flagell_FliJ flagell 29.5 2.7E+02 0.0059 21.6 7.9 38 121-158 60-97 (141)
262 PF14802 TMEM192: TMEM192 fami 29.4 86 0.0019 28.0 4.3 31 118-148 205-235 (236)
263 PRK09039 hypothetical protein; 29.2 4.8E+02 0.01 24.4 9.9 31 127-157 135-165 (343)
264 PLN02678 seryl-tRNA synthetase 28.8 3.6E+02 0.0078 26.4 8.8 25 134-158 76-100 (448)
265 PF09311 Rab5-bind: Rabaptin-l 28.8 38 0.00082 28.7 1.9 46 121-166 7-52 (181)
266 PF07106 TBPIP: Tat binding pr 28.7 1.2E+02 0.0027 25.0 5.0 22 85-106 10-31 (169)
267 KOG4460|consensus 28.7 3.3E+02 0.0072 27.7 8.5 35 129-163 588-622 (741)
268 PF11285 DUF3086: Protein of u 28.7 1.3E+02 0.0028 27.5 5.3 28 130-157 5-32 (283)
269 cd04783 HTH_MerR1 Helix-Turn-H 28.5 2.9E+02 0.0062 21.6 7.5 24 143-166 84-107 (126)
270 PF05377 FlaC_arch: Flagella a 28.5 1.3E+02 0.0029 20.9 4.2 36 131-166 2-37 (55)
271 PRK11239 hypothetical protein; 28.5 1.1E+02 0.0023 27.2 4.6 24 132-155 186-209 (215)
272 PRK09973 putative outer membra 28.5 2.5E+02 0.0054 21.3 6.0 28 131-158 26-53 (85)
273 TIGR01834 PHA_synth_III_E poly 28.4 84 0.0018 29.5 4.2 22 139-160 292-313 (320)
274 PF02388 FemAB: FemAB family; 28.3 1.9E+02 0.0041 27.6 6.7 74 96-171 218-301 (406)
275 cd07677 F-BAR_FCHSD2 The F-BAR 28.2 2.7E+02 0.0058 25.4 7.3 53 99-155 91-143 (260)
276 PF10779 XhlA: Haemolysin XhlA 28.2 2.1E+02 0.0045 20.3 5.5 14 182-196 48-61 (71)
277 PF10186 Atg14: UV radiation r 28.1 2.7E+02 0.0057 24.5 7.3 30 129-158 70-99 (302)
278 PRK09343 prefoldin subunit bet 28.0 3E+02 0.0066 21.7 8.2 63 94-156 40-105 (121)
279 PF11598 COMP: Cartilage oligo 28.0 1.9E+02 0.0041 19.3 5.3 33 122-154 8-40 (45)
280 PF14662 CCDC155: Coiled-coil 27.9 1.5E+02 0.0033 25.8 5.4 40 130-169 75-114 (193)
281 PF03195 DUF260: Protein of un 27.7 65 0.0014 25.0 2.9 26 127-152 76-101 (101)
282 PF03148 Tektin: Tektin family 27.6 2.1E+02 0.0045 27.2 6.9 53 121-173 42-94 (384)
283 PF03961 DUF342: Protein of un 27.6 2.5E+02 0.0054 27.1 7.5 26 131-156 377-402 (451)
284 PF08946 Osmo_CC: Osmosensory 27.5 1.5E+02 0.0033 19.8 4.1 11 122-132 8-18 (46)
285 PF14193 DUF4315: Domain of un 27.4 2.7E+02 0.0058 20.9 6.3 24 124-147 10-33 (83)
286 PRK13182 racA polar chromosome 27.3 3.3E+02 0.0072 23.1 7.4 18 149-166 124-141 (175)
287 PRK02793 phi X174 lysis protei 27.3 2.1E+02 0.0046 20.6 5.3 26 131-156 24-49 (72)
288 PRK02119 hypothetical protein; 27.3 2.1E+02 0.0045 20.7 5.3 26 131-156 25-50 (73)
289 PF06548 Kinesin-related: Kine 27.2 2.7E+02 0.0059 27.5 7.4 62 94-168 363-428 (488)
290 PF10226 DUF2216: Uncharacteri 27.1 1.5E+02 0.0032 25.9 5.1 35 123-157 49-83 (195)
291 PF08961 DUF1875: Domain of un 27.0 21 0.00046 31.8 0.0 42 121-162 121-162 (243)
292 PRK02119 hypothetical protein; 26.9 2.5E+02 0.0054 20.3 5.9 30 138-167 25-54 (73)
293 PRK13923 putative spore coat p 26.6 2.3E+02 0.0051 24.1 6.2 29 129-157 111-139 (170)
294 PRK09039 hypothetical protein; 26.6 2.5E+02 0.0055 26.3 7.1 7 93-99 99-105 (343)
295 COG4396 Mu-like prophage host- 26.5 2.5E+02 0.0055 23.4 6.2 41 123-163 19-74 (170)
296 PF08657 DASH_Spc34: DASH comp 26.2 3.9E+02 0.0085 24.2 8.0 31 126-156 177-207 (259)
297 PF11690 DUF3287: Protein of u 26.1 1.7E+02 0.0036 23.2 4.9 35 122-156 42-78 (109)
298 COG3937 Uncharacterized conser 25.6 3.2E+02 0.0068 21.6 6.3 22 135-156 82-103 (108)
299 PF09340 NuA4: Histone acetylt 25.6 1.4E+02 0.003 22.1 4.2 33 136-168 2-34 (80)
300 PF04380 BMFP: Membrane fusoge 25.5 1.7E+02 0.0036 21.5 4.6 29 135-163 49-77 (79)
301 PF13851 GAS: Growth-arrest sp 25.4 1.8E+02 0.004 25.1 5.6 30 134-163 53-82 (201)
302 KOG0982|consensus 25.3 6.1E+02 0.013 25.0 9.4 40 193-232 447-487 (502)
303 PF10243 MIP-T3: Microtubule-b 25.3 24 0.00051 35.0 0.0 53 90-154 429-481 (539)
304 KOG4797|consensus 25.2 3.5E+02 0.0077 21.5 7.6 34 126-159 64-97 (123)
305 PF08202 MIS13: Mis12-Mtw1 pro 25.1 1.4E+02 0.003 27.4 5.1 42 203-244 258-300 (301)
306 PF15290 Syntaphilin: Golgi-lo 25.1 2.5E+02 0.0055 26.0 6.5 8 149-156 123-130 (305)
307 TIGR01063 gyrA DNA gyrase, A s 25.0 3.4E+02 0.0073 28.6 8.3 23 137-159 428-450 (800)
308 KOG1962|consensus 25.0 2.2E+02 0.0049 25.2 6.0 30 127-156 170-199 (216)
309 cd01109 HTH_YyaN Helix-Turn-He 24.9 1.9E+02 0.004 22.2 5.1 26 131-156 81-106 (113)
310 PRK14140 heat shock protein Gr 24.9 2.7E+02 0.006 24.0 6.5 37 129-165 37-73 (191)
311 PF08614 ATG16: Autophagy prot 24.8 2.2E+02 0.0047 24.2 5.9 24 123-146 117-140 (194)
312 cd04770 HTH_HMRTR Helix-Turn-H 24.8 1.8E+02 0.004 22.5 5.1 24 132-155 82-105 (123)
313 COG0556 UvrB Helicase subunit 24.8 5.1E+02 0.011 26.5 9.0 31 78-108 558-588 (663)
314 PRK13182 racA polar chromosome 24.8 4.3E+02 0.0094 22.4 8.0 32 143-174 125-156 (175)
315 PF10465 Inhibitor_I24: PinA p 24.7 61 0.0013 26.3 2.2 19 120-138 121-139 (140)
316 KOG2307|consensus 24.7 7.8E+02 0.017 25.3 11.1 132 89-225 137-286 (705)
317 COG1293 Predicted RNA-binding 24.6 2.4E+02 0.0052 28.3 7.0 47 119-165 276-322 (564)
318 PF11336 DUF3138: Protein of u 24.5 1E+02 0.0022 30.3 4.0 24 136-159 25-48 (514)
319 PHA02562 46 endonuclease subun 24.3 4.2E+02 0.0091 25.8 8.6 19 90-108 331-349 (562)
320 PRK04325 hypothetical protein; 24.3 2.4E+02 0.0052 20.5 5.2 23 140-162 27-49 (74)
321 PRK09973 putative outer membra 24.3 3.2E+02 0.0069 20.7 6.0 35 129-163 31-65 (85)
322 PRK00846 hypothetical protein; 24.3 2.8E+02 0.0062 20.5 5.6 26 131-156 29-54 (77)
323 PF10796 Anti-adapt_IraP: Sigm 24.3 2.3E+02 0.0051 21.4 5.2 33 130-162 4-36 (87)
324 PF11285 DUF3086: Protein of u 24.2 1.9E+02 0.0042 26.4 5.5 13 190-202 113-125 (283)
325 PF10458 Val_tRNA-synt_C: Valy 24.2 1.2E+02 0.0027 21.2 3.6 21 136-156 4-24 (66)
326 PHA02557 22 prohead core prote 24.2 4.4E+02 0.0096 24.1 7.9 36 127-162 139-174 (271)
327 PF07047 OPA3: Optic atrophy 3 24.2 3.4E+02 0.0073 21.8 6.6 30 129-158 95-127 (134)
328 PF13094 CENP-Q: CENP-Q, a CEN 24.1 4E+02 0.0086 21.7 7.3 25 131-155 43-67 (160)
329 PF15369 KIAA1328: Uncharacter 24.1 6.1E+02 0.013 23.9 9.4 17 87-105 5-21 (328)
330 TIGR02976 phageshock_pspB phag 24.0 1.6E+02 0.0035 21.7 4.2 22 135-156 41-62 (75)
331 smart00502 BBC B-Box C-termina 23.9 3.1E+02 0.0067 20.4 8.0 63 90-166 40-102 (127)
332 PHA02562 46 endonuclease subun 23.7 2.6E+02 0.0057 27.2 7.0 38 127-164 172-209 (562)
333 KOG1760|consensus 23.6 3E+02 0.0064 22.4 5.9 35 132-166 84-118 (131)
334 COG1579 Zn-ribbon protein, pos 23.5 3.8E+02 0.0083 24.0 7.3 33 127-159 101-133 (239)
335 PRK01203 prefoldin subunit alp 23.5 3.3E+02 0.0072 22.1 6.4 37 133-169 4-40 (130)
336 PF04799 Fzo_mitofusin: fzo-li 23.4 2.5E+02 0.0055 24.0 5.8 24 139-162 123-146 (171)
337 TIGR01242 26Sp45 26S proteasom 23.4 1.7E+02 0.0037 27.1 5.4 33 130-162 7-39 (364)
338 PF12443 AKNA: AT-hook-contain 23.2 93 0.002 24.5 3.0 62 78-156 9-72 (106)
339 PF12938 M_domain: M domain of 23.1 4.1E+02 0.0089 23.8 7.4 74 89-170 125-205 (235)
340 COG3114 CcmD Heme exporter pro 23.0 2.9E+02 0.0064 19.9 5.2 32 121-152 25-56 (67)
341 PF12777 MT: Microtubule-bindi 23.0 3.9E+02 0.0084 24.8 7.7 17 190-206 313-330 (344)
342 PF08826 DMPK_coil: DMPK coile 22.9 2.8E+02 0.0061 19.6 6.9 25 134-158 30-54 (61)
343 COG4942 Membrane-bound metallo 22.9 5.5E+02 0.012 25.1 8.7 16 184-199 112-127 (420)
344 KOG4643|consensus 22.9 3.3E+02 0.0071 29.7 7.6 45 121-165 176-220 (1195)
345 PF10168 Nup88: Nuclear pore c 22.8 4.6E+02 0.0099 27.3 8.7 48 121-168 578-625 (717)
346 PF04201 TPD52: Tumour protein 22.7 2.2E+02 0.0047 24.2 5.3 32 135-166 28-59 (162)
347 PF10458 Val_tRNA-synt_C: Valy 22.7 2E+02 0.0044 20.0 4.5 27 141-167 2-28 (66)
348 PRK14161 heat shock protein Gr 22.6 4.3E+02 0.0093 22.5 7.2 44 122-165 12-55 (178)
349 PF08232 Striatin: Striatin fa 22.6 3.1E+02 0.0066 22.2 6.1 29 130-158 33-61 (134)
350 PF11221 Med21: Subunit 21 of 22.5 2.9E+02 0.0064 22.4 6.0 48 97-156 84-131 (144)
351 cd07627 BAR_Vps5p The Bin/Amph 22.5 4.3E+02 0.0093 22.7 7.4 17 185-201 165-181 (216)
352 COG3879 Uncharacterized protei 22.4 1.8E+02 0.004 26.3 5.1 28 129-156 57-84 (247)
353 PF13591 MerR_2: MerR HTH fami 22.3 1.2E+02 0.0025 22.4 3.3 21 128-148 62-82 (84)
354 PF10205 KLRAQ: Predicted coil 22.3 3E+02 0.0065 21.5 5.6 24 132-155 43-66 (102)
355 PRK05771 V-type ATP synthase s 22.2 1.6E+02 0.0036 29.7 5.3 39 120-158 91-129 (646)
356 PF10146 zf-C4H2: Zinc finger- 22.1 5.5E+02 0.012 22.8 8.0 40 127-166 30-69 (230)
357 KOG0837|consensus 22.1 2.6E+02 0.0057 25.6 5.9 38 128-165 226-263 (279)
358 PF13094 CENP-Q: CENP-Q, a CEN 22.0 4.4E+02 0.0095 21.5 7.2 31 121-151 54-84 (160)
359 KOG1853|consensus 22.0 2.5E+02 0.0054 25.8 5.8 36 123-158 141-179 (333)
360 COG3599 DivIVA Cell division i 21.9 3.2E+02 0.0069 24.0 6.4 38 121-158 29-66 (212)
361 cd04769 HTH_MerR2 Helix-Turn-H 21.9 2.9E+02 0.0062 21.3 5.6 28 131-158 81-108 (116)
362 KOG1488|consensus 21.9 3.7E+02 0.0081 26.8 7.5 46 192-240 318-365 (503)
363 PF13600 DUF4140: N-terminal d 21.8 2.1E+02 0.0046 21.4 4.8 33 123-155 71-103 (104)
364 PF11853 DUF3373: Protein of u 21.7 62 0.0014 32.1 2.1 26 130-155 32-57 (489)
365 PF03357 Snf7: Snf7; InterPro 21.6 2.1E+02 0.0046 22.9 5.1 20 134-153 6-25 (171)
366 PRK11239 hypothetical protein; 21.6 1.8E+02 0.0039 25.8 4.7 29 136-164 183-211 (215)
367 PF13863 DUF4200: Domain of un 21.5 2.9E+02 0.0062 21.3 5.6 36 131-166 69-104 (126)
368 KOG4343|consensus 21.5 85 0.0019 31.6 3.0 26 131-156 311-336 (655)
369 PF09726 Macoilin: Transmembra 21.5 6.1E+02 0.013 26.4 9.2 16 87-102 500-515 (697)
370 TIGR02231 conserved hypothetic 21.3 7.6E+02 0.016 24.2 9.7 40 127-166 129-168 (525)
371 PF12718 Tropomyosin_1: Tropom 21.3 3.4E+02 0.0073 22.1 6.1 27 131-157 16-42 (143)
372 cd01282 HTH_MerR-like_sg3 Heli 21.3 3.3E+02 0.0072 20.9 5.9 19 141-159 86-104 (112)
373 PF03931 Skp1_POZ: Skp1 family 21.3 36 0.00079 23.5 0.3 45 178-222 5-60 (62)
374 cd04766 HTH_HspR Helix-Turn-He 21.2 2E+02 0.0044 21.1 4.4 16 141-156 70-85 (91)
375 PRK10803 tol-pal system protei 21.1 4.5E+02 0.0098 23.5 7.4 34 127-160 59-92 (263)
376 PRK05561 DNA topoisomerase IV 21.1 4.5E+02 0.0099 27.4 8.3 32 127-158 422-459 (742)
377 TIGR01834 PHA_synth_III_E poly 21.0 1.7E+02 0.0036 27.5 4.7 24 143-166 289-312 (320)
378 PF12329 TMF_DNA_bd: TATA elem 21.0 3.3E+02 0.0072 19.7 5.5 37 121-157 32-68 (74)
379 PF11559 ADIP: Afadin- and alp 21.0 4.4E+02 0.0096 21.1 7.8 16 88-103 51-66 (151)
380 KOG1248|consensus 20.9 1.4E+02 0.0031 32.6 4.6 51 189-242 494-547 (1176)
381 cd04776 HTH_GnyR Helix-Turn-He 20.8 4E+02 0.0086 20.7 6.3 30 125-154 83-112 (118)
382 PHA02047 phage lambda Rz1-like 20.7 4.1E+02 0.009 20.7 7.2 31 128-158 33-63 (101)
383 COG1382 GimC Prefoldin, chaper 20.6 4.5E+02 0.0098 21.1 6.8 81 90-171 28-112 (119)
384 PF05384 DegS: Sensor protein 20.6 5.1E+02 0.011 21.7 7.2 40 124-163 79-118 (159)
385 COG5570 Uncharacterized small 20.5 1.2E+02 0.0027 21.0 2.7 20 131-150 35-54 (57)
386 PRK05689 fliJ flagellar biosyn 20.5 4.4E+02 0.0096 20.9 7.9 38 120-157 62-99 (147)
387 PF03955 Adeno_PIX: Adenovirus 20.5 1.8E+02 0.004 23.0 4.1 21 135-155 89-109 (109)
388 KOG3856|consensus 20.4 2.4E+02 0.0051 23.0 4.8 26 131-156 19-44 (135)
389 PF13851 GAS: Growth-arrest sp 20.3 5.4E+02 0.012 22.1 7.5 30 123-152 21-50 (201)
390 PF09802 Sec66: Preprotein tra 20.3 2.6E+02 0.0056 24.3 5.4 40 96-135 49-90 (190)
391 PHA03011 hypothetical protein; 20.2 1.9E+02 0.0041 22.7 4.1 21 138-158 94-114 (120)
392 PRK10265 chaperone-modulator p 20.2 1.3E+02 0.0029 22.9 3.3 26 140-165 75-100 (101)
393 PF14235 DUF4337: Domain of un 20.2 3.8E+02 0.0083 22.3 6.3 20 136-155 80-99 (157)
394 PF13863 DUF4200: Domain of un 20.1 4.1E+02 0.0089 20.4 7.5 25 131-155 83-107 (126)
395 cd04784 HTH_CadR-PbrR Helix-Tu 20.1 2.7E+02 0.0059 21.7 5.2 35 129-163 79-113 (127)
No 1
>KOG1319|consensus
Probab=100.00 E-value=2.7e-50 Score=337.87 Aligned_cols=210 Identities=54% Similarity=0.803 Sum_probs=193.6
Q ss_pred CCCCCCCCCCCCCccccCCCCCCcccCCCCCCCCCCCCCCCCCCCC-----CCcchhhhHHHHhHHHHHHHHHHHHHHHH
Q psy14439 25 NMKAEPISPNSMVSYSRSNSNGSFQSASNNVGNNSSSSGHEDEESG-----SPLNYKERRREAHTQAEQKRRDAIKKGYD 99 (245)
Q Consensus 25 ~~~~~P~sp~~~~~~Sr~sS~~s~~~~~~~~~~~s~~~~~~~ed~~-----~~~~~~~~rR~~H~~~ErkRR~~In~~f~ 99 (245)
+.++.-++.-.+..++++++.|+. ++++++|++++|++ .+.+|+++||.+|..+||+||+.||.|++
T Consensus 11 ~~g~~~~s~~k~~~~sr~Ss~GSt--------sssSApNtdd~ds~~hS~a~k~syk~rrr~aHtqaEqkRRdAIk~GYd 82 (229)
T KOG1319|consen 11 DPGLFVESTRKGSVVSRASSIGST--------SASSAPNTDDEDSDYHSEAYKESYKDRRRRAHTQAEQKRRDAIKRGYD 82 (229)
T ss_pred CcccccccccCcchhhhcCCCCCC--------CCCCCCCCCcccccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 344445555567778999999984 34778899888877 46788999999999999999999999999
Q ss_pred HHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q psy14439 100 SLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEAR 179 (245)
Q Consensus 100 ~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~v~~r 179 (245)
.|+.|||.|...+.++.|++||.||+|+||||.+|++++.+.++|+..|++++.+|++.+.+||+|+..++..++..+.|
T Consensus 83 dLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~YEqM~~~~qdnp~~~e~~ 162 (229)
T KOG1319|consen 83 DLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKVNYEQMVKAHQDNPHEGEDQ 162 (229)
T ss_pred HHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhh
Confidence 99999999998776778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhHHhhHHHhhhhcC-CCCCChHHHHHhHHHHhhhcCChhhhHHHHHHHHHHhhhc
Q psy14439 180 LSDEVKFQVFQSIMDELFSTFCN-VGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSRIANS 242 (245)
Q Consensus 180 ~~~~~kf~if~~i~~~lf~sf~~-vs~~s~~~l~~~~~~W~~~~c~~~~lr~~v~~~l~~l~~~ 242 (245)
+.|..||.||+.|||.||+||+. |++++|++|.+|+++|||+||+|.+||.++..+|.+...+
T Consensus 163 ~~d~~kf~vfQ~imd~~F~sF~~~i~~~~f~~lT~~i~sWvEehckp~~lr~i~~g~l~qMpk~ 226 (229)
T KOG1319|consen 163 VSDQVKFNVFQGIMDSLFQSFNASISVASFQELTACVFSWIEEHCKPQTLREIVIGVLHQMPKN 226 (229)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHcccc
Confidence 99999999999999999999998 9999999999999999999999999999999999998643
No 2
>KOG3582|consensus
Probab=99.92 E-value=1.9e-25 Score=216.72 Aligned_cols=165 Identities=28% Similarity=0.436 Sum_probs=153.1
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 78 RRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 78 ~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
.|++.|+.+|+|||++|+-+|+.|..++-+.... .+.|+.++.-|+++++||-.++++...+.+|-..|++++++|+.
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l--~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A 727 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSL--SSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNA 727 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccc--cchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHH
Confidence 7899999999999999999999999999876543 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCC-------------CccccccccchhhHHhHHhhHHHhhhhcC-CCCCChHHHHHhHHHHhhhcC
Q psy14439 158 MQANYDIMVKAQQTPL-------------GQTEARLSDEVKFQVFQSIMDELFSTFCN-VGVSNFSELSACVFSWLEEYC 223 (245)
Q Consensus 158 ~~~~~e~~~~~~~~~~-------------~~v~~r~~~~~kf~if~~i~~~lf~sf~~-vs~~s~~~l~~~~~~W~~~~c 223 (245)
++..|++...+.+.|. .+++.||..|||||||++++.++|++||+ |++.+.+.+.++-++|+|++|
T Consensus 728 ~~~~~~q~p~aT~vp~~r~r~~hm~~~~~~~s~~rt~h~~k~~i~s~l~s~~fep~n~~v~a~sih~lrr~~~~~~dq~~ 807 (856)
T KOG3582|consen 728 VISACQQPPPATGVPGTRLRFDHMGDMFDSYSPTRTLHNWKFWIFSILISPLFEPFNGMVSAGSIHALRRTRLNWLDQFC 807 (856)
T ss_pred HHHHhhcCCCccCCcchhhhHHhhhhhhhhcccccccccccccccchhhccccccccceeecchHHHHHHHHHHHhhccc
Confidence 9888887777766664 36789999999999999999999999999 999999999999999999999
Q ss_pred ChhhhHHHHHHHHHHhhhcCC
Q psy14439 224 KPQTLKQNIASVLSRIANSDS 244 (245)
Q Consensus 224 ~~~~lr~~v~~~l~~l~~~~~ 244 (245)
++++|||.|+..|++|.+.||
T Consensus 808 sL~alrp~v~~~~~ql~S~tS 828 (856)
T KOG3582|consen 808 SLPALRPQVLLNLRQLLSSTS 828 (856)
T ss_pred cHHHHHHHHHhhHHHhhhhhh
Confidence 999999999999999998886
No 3
>KOG1318|consensus
Probab=99.66 E-value=2.1e-15 Score=141.70 Aligned_cols=100 Identities=25% Similarity=0.414 Sum_probs=73.7
Q ss_pred CCcchhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q psy14439 71 SPLNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEE---RNG 147 (245)
Q Consensus 71 ~~~~~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e---~~~ 147 (245)
....+.++||..||.+|||||++||++|.+|..|||.|... ..|..|++||.++||||+.||+..++..+. .+.
T Consensus 225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~---~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~ 301 (411)
T KOG1318|consen 225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSE---DMKSNKGTILKASCDYIRELQQTLQRARELENRQKK 301 (411)
T ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcc---hhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34566788999999999999999999999999999999763 457789999999999999999988854432 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy14439 148 LRKEVVALRIMQANYDIMVKAQQTPL 173 (245)
Q Consensus 148 L~~ei~~L~~~~~~~e~~~~~~~~~~ 173 (245)
|+.-+..|...++.++.+...++.+.
T Consensus 302 le~~n~~L~~rieeLk~~~~~~~~~~ 327 (411)
T KOG1318|consen 302 LESTNQELALRIEELKSEAGRHGLQV 327 (411)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 33334444444444444554554443
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.59 E-value=3.3e-15 Score=103.40 Aligned_cols=55 Identities=49% Similarity=0.844 Sum_probs=49.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHH
Q psy14439 79 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLV 135 (245)
Q Consensus 79 rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq 135 (245)
||..|+.+||+||++||.+|++|+.+||.+... ...|++|++||+.||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~--~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAG--SSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCC--TTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhcc--ccccCCHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999996211 2568999999999999999997
No 5
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.50 E-value=6.2e-14 Score=97.81 Aligned_cols=58 Identities=43% Similarity=0.692 Sum_probs=52.7
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy14439 77 ERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQK 138 (245)
Q Consensus 77 ~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~ 138 (245)
..+|..|+.+||+||+.||.+|++|+.+||... .+.|++|+.||++||+||+.|+.+.
T Consensus 2 ~~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~----~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 2 KSRREAHNLRERRRRERINDAFDELRSLLPTLP----PSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999975 2468999999999999999998764
No 6
>smart00353 HLH helix loop helix domain.
Probab=99.36 E-value=1.6e-12 Score=88.76 Aligned_cols=52 Identities=37% Similarity=0.617 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy14439 84 TQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKK 139 (245)
Q Consensus 84 ~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~ 139 (245)
|.+||+||+.||.+|..|+.+||.+. .+.|++|+.||..||+||+.|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~----~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLP----NNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999875 25689999999999999999988764
No 7
>KOG2483|consensus
Probab=99.19 E-value=1.5e-10 Score=102.18 Aligned_cols=82 Identities=24% Similarity=0.379 Sum_probs=72.6
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 77 ERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLS-KATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 77 ~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~s-Ka~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
...|..||..||+||+.|+++|..|+.+||.+... +.+ .+.||.+|.+||+.|+.+....+..+++|+++-..|
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~-----~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l 131 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGE-----TRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKL 131 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCc-----chhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44699999999999999999999999999998643 333 799999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy14439 156 RIMQANYD 163 (245)
Q Consensus 156 ~~~~~~~e 163 (245)
+...++++
T Consensus 132 ~~rl~ql~ 139 (232)
T KOG2483|consen 132 KARLEQLS 139 (232)
T ss_pred HHHHHHhc
Confidence 86665544
No 8
>KOG4304|consensus
Probab=98.92 E-value=7.9e-10 Score=98.86 Aligned_cols=71 Identities=25% Similarity=0.429 Sum_probs=60.2
Q ss_pred chhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCC-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 74 NYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTD-SSGYKLSKATVLQKSIDYIQFLVQQKKKLEEE 144 (245)
Q Consensus 74 ~~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~-~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e 144 (245)
..+..||..|-..|||||++||.++++|+.|||.+.+.+ ....|+.||.||+.||+|++.|+.........
T Consensus 27 ~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~~ 98 (250)
T KOG4304|consen 27 KTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQA 98 (250)
T ss_pred hhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccccc
Confidence 345788999999999999999999999999999886554 24579999999999999999998876655444
No 9
>KOG0561|consensus
Probab=98.87 E-value=4.4e-09 Score=95.12 Aligned_cols=76 Identities=34% Similarity=0.529 Sum_probs=67.2
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 76 ~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
++-||+--|.-||||..-||.||..|+.|+|--. +.|+|||.||+.+.+||..|..++.++-.+..+|++.+.++
T Consensus 57 rRmRReIANsNERRRMQSINAGFqsLr~LlPr~e-----GEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr~~~E~ 131 (373)
T KOG0561|consen 57 RRMRREIANSNERRRMQSINAGFQSLRALLPRKE-----GEKLSKAAILQQTADYIHQLEGHKTELLPQNGELKRLKLEE 131 (373)
T ss_pred HHHHHHhhcchHHHHHHhhhHHHHHHHHhcCccc-----chhhHHHHHHHHHHHHHHHHHhcccccccccchHHHHHhhh
Confidence 3467788899999999999999999999999853 67999999999999999999999999988888888777765
Q ss_pred H
Q psy14439 156 R 156 (245)
Q Consensus 156 ~ 156 (245)
.
T Consensus 132 ~ 132 (373)
T KOG0561|consen 132 D 132 (373)
T ss_pred c
Confidence 3
No 10
>KOG2588|consensus
Probab=98.84 E-value=4.2e-09 Score=106.99 Aligned_cols=67 Identities=40% Similarity=0.549 Sum_probs=63.0
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 77 ERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLR 149 (245)
Q Consensus 77 ~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~ 149 (245)
..||.+||.+|+|+|.+||++|.+|+.+||.. ..|+.|..+|.+|++||++|+..++.+.++.+.++
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~------~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGT------EAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCcc------HhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 47899999999999999999999999999996 35899999999999999999999999999999887
No 11
>KOG3561|consensus
Probab=98.81 E-value=5.7e-09 Score=105.58 Aligned_cols=63 Identities=29% Similarity=0.467 Sum_probs=56.1
Q ss_pred CcchhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q psy14439 72 PLNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQ 137 (245)
Q Consensus 72 ~~~~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~ 137 (245)
...+++.+|++|+.+|||||+++|.-|.||..|||.|.. .+.|++|.+||++||++|+.+++.
T Consensus 13 ~d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~---~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 13 SDSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNAS---LSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchh---cccCchHHHHHHHHHHHHHHHhhh
Confidence 344556679999999999999999999999999999875 468999999999999999998874
No 12
>KOG3960|consensus
Probab=98.37 E-value=9.7e-06 Score=72.04 Aligned_cols=67 Identities=21% Similarity=0.381 Sum_probs=53.5
Q ss_pred cchhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 73 LNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEE 144 (245)
Q Consensus 73 ~~~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e 144 (245)
++....||.+-...||||=.++|+.|+.|+.---. +++.++-|+.||..||+||..||.-.+++.+.
T Consensus 112 ks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~-----NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 112 KSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSS-----NPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33345788889999999999999999999875432 24678999999999999999998765554433
No 13
>KOG4029|consensus
Probab=98.31 E-value=2.3e-06 Score=75.41 Aligned_cols=68 Identities=25% Similarity=0.412 Sum_probs=57.5
Q ss_pred chhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 74 NYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEE 144 (245)
Q Consensus 74 ~~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e 144 (245)
.....+|..+|..||+|-..+|.+|.+|+.+||..... ..|+||..+|.-||.||++|++-.+.....
T Consensus 104 ~~~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~---~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 104 SQTSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQ---SKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred cchhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCc---ccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 33567788899999999999999999999999997641 569999999999999999998766555433
No 14
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.26 E-value=2.5e-06 Score=63.95 Aligned_cols=59 Identities=31% Similarity=0.373 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 92 DAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKE 151 (245)
Q Consensus 92 ~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~e 151 (245)
+.|++-+..|+.|+|...... .+.|.+-+-||+.||.||+.|++|++.|.+.+.+|-.-
T Consensus 20 dqi~dLvsKLq~llPe~r~~r-~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSR-RSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 679999999999999986422 45689999999999999999999999999998887543
No 15
>KOG3910|consensus
Probab=98.00 E-value=3.1e-05 Score=74.55 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=55.1
Q ss_pred CcchhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy14439 72 PLNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKK 140 (245)
Q Consensus 72 ~~~~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~ 140 (245)
+..+...||.+.|+.||-|-..||+.|+||..+.-.--+ ......|..||..||..|-.|+|++.+
T Consensus 519 kaeREkERR~aNNARERlRVRDINeAfKELGRMCqlHlk---SeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 519 KAEREKERRMANNARERLRVRDINEAFKELGRMCQLHLK---SEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred hhhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhc---ccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 555677899999999999999999999999998754322 233567999999999999999988765
No 16
>KOG4447|consensus
Probab=97.74 E-value=3.6e-05 Score=63.78 Aligned_cols=54 Identities=30% Similarity=0.530 Sum_probs=50.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy14439 78 RRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQ 136 (245)
Q Consensus 78 ~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~ 136 (245)
.+|.-||..||+|-..+|+.|..|+.++|++. ..|+||.-.|+-|..||-+|-+
T Consensus 77 ~qrv~anvrerqRtqsLn~AF~~lr~iiptlP-----sdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 77 KQRVMANVRERQRTQSLNEAFAALRKIIPTLP-----SDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCC-----ccccccccchhhcccCCchhhh
Confidence 57899999999999999999999999999984 5589999999999999999954
No 17
>KOG3898|consensus
Probab=96.98 E-value=0.002 Score=57.94 Aligned_cols=57 Identities=26% Similarity=0.376 Sum_probs=50.7
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy14439 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQ 136 (245)
Q Consensus 76 ~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~ 136 (245)
...||..-|..||+|-..+|+.|+.|+.+||...+ ..|++|..+|+.|-.||..|++
T Consensus 69 ~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~----~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 69 LTLRRLKANARERTRMHDLNDALDALREVIPHGLH----PPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hhhhcccccchhhccccchhHHHHHhHhhccCcCC----CCCCCcchhHHhhhcchhhhcc
Confidence 45778889999999999999999999999997544 4599999999999999999864
No 18
>KOG4395|consensus
Probab=96.92 E-value=0.0013 Score=58.73 Aligned_cols=59 Identities=31% Similarity=0.389 Sum_probs=52.3
Q ss_pred chhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy14439 74 NYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQ 136 (245)
Q Consensus 74 ~~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~ 136 (245)
....+||.+-|..||+|-..+|..|+.|+..||.... ..|+||-..|+.|-.||--|-.
T Consensus 169 ~v~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~----d~~LSkyetLqmaq~yi~~l~~ 227 (285)
T KOG4395|consen 169 SVNSHRRLAANARERRRMNGLNSAFDRLRLVVPDGDS----DKKLSKYETLQMAQGYILALGC 227 (285)
T ss_pred hHHHhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCc----cchhhhhhHHHHHHHHHhhhHH
Confidence 3456889999999999999999999999999999764 5699999999999999988743
No 19
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.94 E-value=0.65 Score=33.93 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
++.|||-|.-||-++.+|+++...|.+|+..+...+.+++.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999888888876655555443
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.90 E-value=0.64 Score=34.05 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
.+.||+-|..|+.++.+|+++...|..+.+.|+.....+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4679999999999999999997777777777765544433
No 21
>smart00338 BRLZ basic region leucin zipper.
Probab=92.12 E-value=0.92 Score=31.95 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
+--.||..|+.++..|+.++..|+.++..|+..+..+...
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888888888888888888887766665544
No 22
>KOG3119|consensus
Probab=92.00 E-value=6.3 Score=35.74 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 134 LVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
++.++..|+.|.+.|+.+|+.|+.....+..+..+.
T Consensus 220 ~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 220 MAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555555555555555555555555443
No 23
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.01 E-value=1.3 Score=32.94 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
++.|||-|.-||.++++|+++...|.++++.++..+.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~ 49 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQRE 49 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5679999999999999999999998888777554433
No 24
>KOG3558|consensus
Probab=90.86 E-value=0.27 Score=49.81 Aligned_cols=53 Identities=26% Similarity=0.471 Sum_probs=44.5
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q psy14439 77 ERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQ 132 (245)
Q Consensus 77 ~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~ 132 (245)
+.||++-.-|-|-||.+=|.-|.+|..+|| +... -..-++||.|++-||-|++
T Consensus 44 ~~rkEkSRdAARsRRsKEn~~FyeLa~~lP-lp~a--isshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 44 ELRKEKSRDAARSRRSKENEEFYELAKLLP-LPAA--ISSHLDKASIMRLTISYLR 96 (768)
T ss_pred HHHhhhhhhhhhhhcccchHHHHHHHHhCC-Ccch--hhhhhhhHHHHHHHHHHHH
Confidence 566777777889999999999999999999 4332 2457999999999999997
No 25
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=90.82 E-value=1.9 Score=30.30 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
..||..|+..+..|+.++..|+.++..|+.....+..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777777777777777777666655554443
No 26
>KOG3582|consensus
Probab=90.51 E-value=0.044 Score=55.27 Aligned_cols=69 Identities=23% Similarity=0.192 Sum_probs=58.3
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLR 149 (245)
Q Consensus 76 ~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~ 149 (245)
...++..|+.++||+|.++.++|..|-.|.|.+... ...+.+++.||. |.|+.++++.+.+.+.+..++
T Consensus 784 n~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~--~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~kr 852 (856)
T KOG3582|consen 784 NGMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLN--LRQLLSSTSILT---DPIKQPEQASKAVTEKIEGKR 852 (856)
T ss_pred cceeecchHHHHHHHHHHHhhccccHHHHHHHHHhh--HHHhhhhhhccc---CcccchHHHHHHHHhhhhhhc
Confidence 346688899999999999999999999999987543 355789999999 999999999998888766543
No 27
>KOG0709|consensus
Probab=89.17 E-value=0.52 Score=45.71 Aligned_cols=86 Identities=22% Similarity=0.216 Sum_probs=61.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhH-----HhHH
Q psy14439 117 KLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQ-----VFQS 191 (245)
Q Consensus 117 K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~v~~r~~~~~kf~-----if~~ 191 (245)
|.++..-=.|--+||..|...+..--++.+.|+++|+.|+.....+-+.++..|.....+..++.+--..- -|..
T Consensus 260 K~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an~s~qt~tC~av~~lS~~l 339 (472)
T KOG0709|consen 260 KRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVANKSTQTSTCLAVLLLSFCL 339 (472)
T ss_pred hhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHH
Confidence 45556666677789999999998888889999999999887777777777776655555544443333222 2677
Q ss_pred hh--HHHhhhhcC
Q psy14439 192 IM--DELFSTFCN 202 (245)
Q Consensus 192 i~--~~lf~sf~~ 202 (245)
++ =++|..|+.
T Consensus 340 ~~s~lp~~~~~~~ 352 (472)
T KOG0709|consen 340 LLSTLPCFSEFSQ 352 (472)
T ss_pred HHhhcccccccCC
Confidence 77 778999986
No 28
>KOG4447|consensus
Probab=86.71 E-value=1.2 Score=37.23 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 86 AEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 86 ~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
.|+.|...+++.|+-|++|+|.... .+.++.-.|..+-+||.+|.+-.+++---.-+=++.-..|+..-..+..+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa-----~gk~~~ktlr~~~~~~~~~dE~q~qrv~anvrerqRtqsLn~AF~~lr~i 103 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPA-----DGKRGKKTLRIGTDSIQSLDELQKQRVMANVRERQRTQSLNEAFAALRKI 103 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCC-----cccccccccccCCCchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 4788888899999999999999743 34555556899999999886655543333333345555565554445544
Q ss_pred H
Q psy14439 166 V 166 (245)
Q Consensus 166 ~ 166 (245)
+
T Consensus 104 i 104 (173)
T KOG4447|consen 104 I 104 (173)
T ss_pred c
Confidence 4
No 29
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=85.65 E-value=5.5 Score=30.27 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
++++++++.+|++|+++|+.|+..-+....|++..
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vr 59 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVR 59 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666667777777766666666666666544
No 30
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=82.76 E-value=5.7 Score=26.95 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
-.|+..|..++..|..++..|+.+|..|+
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777777777777777777775
No 31
>KOG4005|consensus
Probab=82.70 E-value=32 Score=31.03 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=33.3
Q ss_pred cchhhhHHHHhHHHH-HHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 73 LNYKERRREAHTQAE-QKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKE 151 (245)
Q Consensus 73 ~~~~~~rR~~H~~~E-rkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~e 151 (245)
..++.++|-.|..-| +--|.++|++...= +. +--|-.-..+-=+-|+.|.++++.|+.|.+.|+..
T Consensus 53 ~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQ-----ta--------RDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 53 QPKRKRRRLDHLSWEEKVQRRKLKNRVAAQ-----TA--------RDRKKARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred chHHHHHhhcccCHHHHHHHHHHHHHHHHh-----hh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777554 44555566654321 00 01122222333344566666666666555555444
Q ss_pred HHH
Q psy14439 152 VVA 154 (245)
Q Consensus 152 i~~ 154 (245)
-+.
T Consensus 120 n~~ 122 (292)
T KOG4005|consen 120 NES 122 (292)
T ss_pred HHH
Confidence 433
No 32
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=82.09 E-value=7.3 Score=32.90 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQ----------QKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~----------~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
...|...|.|++.|+. +++++++++..|+.+++.|+.....+.
T Consensus 79 ~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 79 SLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred cCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888887764 455556666666666666655544433
No 33
>KOG3560|consensus
Probab=80.87 E-value=1.3 Score=44.08 Aligned_cols=43 Identities=30% Similarity=0.498 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q psy14439 87 EQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQ 132 (245)
Q Consensus 87 ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~ 132 (245)
-+|-|+++|.-++.|..|+|--.+. -.|++|..||.-+|-|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdi---isKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDI---ISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHH---HhhhhhhhhhhhhHHHHH
Confidence 3677899999999999999975432 358999999999999986
No 34
>PRK14127 cell division protein GpsB; Provisional
Probab=80.63 E-value=4.6 Score=31.93 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
-|+..++-+..|..++..|++++.+|+.++.+++....
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46666666677777777777777777777776654433
No 35
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=79.62 E-value=5 Score=31.31 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
.-|..+++++++++++.+.|+.||+.|+.-..-++..++..
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~ 74 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNE 74 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence 44566677777777777777777777765333445555443
No 36
>KOG4571|consensus
Probab=79.34 E-value=32 Score=31.73 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
..-++-|..++++|++++..|++||.-||..+
T Consensus 254 ~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 254 LGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888888888888887543
No 37
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=77.93 E-value=9.7 Score=27.10 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
|..|+.+.++++.+++.|+.+++.|+......+..++
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4455555555555555555555555333333444444
No 38
>KOG3559|consensus
Probab=77.12 E-value=1.8 Score=41.63 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q psy14439 85 QAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQF 133 (245)
Q Consensus 85 ~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~ 133 (245)
.+-|.||++=|.-|-+|.+++|-...- ...++|++|++-|..|||.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AI---tsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAI---TSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhh---hhccchhhhhhHHHHHHHH
Confidence 345889999999999999999975432 2359999999999999983
No 39
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=76.61 E-value=15 Score=25.60 Aligned_cols=57 Identities=30% Similarity=0.468 Sum_probs=38.2
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 76 ~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
...|+..-..+=++-|..-+..+.+|..-| ..|..++..|..++..|+.++..|
T Consensus 6 ~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~--------------------------~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 6 RERRRERNREAARRSRQRKKQYIEELEEKV--------------------------EELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666777777777777775433 346777777788888888888777
Q ss_pred HHH
Q psy14439 156 RIM 158 (245)
Q Consensus 156 ~~~ 158 (245)
+..
T Consensus 60 ~~e 62 (64)
T PF00170_consen 60 KSE 62 (64)
T ss_dssp HHH
T ss_pred Hhh
Confidence 643
No 40
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=76.44 E-value=6.3 Score=28.11 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
.+--+..++++..+++.+++.++.+++.|+..+..+
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456788888888888888888888887665554
No 41
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=75.62 E-value=8 Score=33.78 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
-.-|..|++=...|+.++..+++++..|++|...|+.....++.+
T Consensus 117 R~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~l 161 (200)
T PF07412_consen 117 RKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYL 161 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999999999887665444433
No 42
>smart00340 HALZ homeobox associated leucin zipper.
Probab=74.84 E-value=6.7 Score=25.87 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
.|++--+.|.+|+.+|++|+++|+..
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566778889999999999999743
No 43
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=74.49 E-value=11 Score=33.88 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM---QANYDIMV 166 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~---~~~~e~~~ 166 (245)
-..+..+..|++++++|++|+.+|+.++..++.. ..++..++
T Consensus 65 ~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 65 FESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667788899999999999998888855443 34444444
No 44
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.48 E-value=29 Score=25.45 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQ----FLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~----~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
++-.++|+.-|+-++ .|.++.+.++...+.|++|.+.|+....+.+..++
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777665544 23344444445555555555555555555444443
No 45
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.36 E-value=17 Score=26.57 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
|..|++++..+.++...|+.+.+.|+....+.+
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666655544433
No 46
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=74.00 E-value=28 Score=24.46 Aligned_cols=57 Identities=18% Similarity=0.348 Sum_probs=40.5
Q ss_pred HHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 98 YDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 98 f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
...+..+||.- +..=-..|.++.+-=...-.++.++..|++.|+++..+|+....+|
T Consensus 3 W~~~~~vip~~--------~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 3 WERLANVIPDE--------KIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHhhcCChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777762 3344667777776666666778888889999999999997665543
No 47
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=73.99 E-value=29 Score=26.38 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
.-.+-++-++.-+.++++++++.|.+|.+.|+.+++..+..++.
T Consensus 12 ~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 12 AVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666667777777777776666666655554
No 48
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.96 E-value=15 Score=26.82 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
.-|+.|+..+..++.++..|...++.+.....+++..+.
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457888888888888888888888888777777666554
No 49
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=72.13 E-value=26 Score=27.64 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=46.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCC---C-----CCCCchH-HHHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy14439 80 REAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTD---S-----SGYKLSK-ATVLQKSIDYIQFLV----QQKKKLEEERN 146 (245)
Q Consensus 80 R~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~---~-----~~~K~sK-a~IL~kAi~YI~~Lq----~~~~~l~~e~~ 146 (245)
+..-.-.++-.| ..=|+.|+..|+.+.-.. . ...-.=| .-++|-+|+|+-+.| ..+..++++++
T Consensus 14 ~i~~iDvd~i~~---~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~ 90 (118)
T PF13815_consen 14 LISAIDVDRIVR---ELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQ 90 (118)
T ss_pred HHhccCHHHHHh---ccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555 345778888887653211 0 0011113 357788999986654 45566666777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14439 147 GLRKEVVALRIMQANYDI 164 (245)
Q Consensus 147 ~L~~ei~~L~~~~~~~e~ 164 (245)
.+..+++.|+........
T Consensus 91 ~~~~~~~~l~~~~~~~~~ 108 (118)
T PF13815_consen 91 ELQQEIEKLKQKLKKQKE 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777776655444433
No 50
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=71.79 E-value=22 Score=24.85 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
|..|..++.+|..++..|+.++...+.+..
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665554433
No 51
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.47 E-value=16 Score=31.92 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
..-|...-..|..|++++++|.+++..++.+++.|+......+
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677888999999999999999999888876655444
No 52
>PRK14127 cell division protein GpsB; Provisional
Probab=71.35 E-value=18 Score=28.64 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
...=+|+..+-++.+.+..++.+|+.++..|+.....++..+...
T Consensus 26 ~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345589999999999999999999999999999988888877643
No 53
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=69.45 E-value=12 Score=27.78 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 138 KKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 138 ~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
.++.+++++.|++++...+.....|.
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444444
No 54
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=69.20 E-value=34 Score=24.77 Aligned_cols=43 Identities=26% Similarity=0.259 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
..-..+..++++.++++.+..+|+.|+..|.. ....+.+.+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar~~ 70 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAKKQ 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHh
Confidence 34445566666666666677777777766643 34455555544
No 55
>smart00338 BRLZ basic region leucin zipper.
Probab=69.10 E-value=28 Score=24.25 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
-+..|..++..|..++..|+.++..|+..
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888643
No 56
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=68.85 E-value=14 Score=27.68 Aligned_cols=72 Identities=19% Similarity=0.136 Sum_probs=41.8
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 93 AIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 93 ~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
.+....++|..+-|...- -..+.++-|+...-+++..|..+.+.++.++..|+.++..+......++..+.+
T Consensus 30 ~~~~~~~eL~~l~~~~~~----y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 30 ELELTLEELEKLDDDRKV----YKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHTSSTT-EE----EEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcchh----HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999988776210 012333444444445556666666666666666666666666555555555443
No 57
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=68.00 E-value=9.2 Score=27.10 Aligned_cols=47 Identities=28% Similarity=0.351 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy14439 120 KATVLQKSIDYIQFLVQQ-KKKLEEERNGLRKEVVALRIMQANYDIMVKAQQT 171 (245)
Q Consensus 120 Ka~IL~kAi~YI~~Lq~~-~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~ 171 (245)
+..-|++.|.|++.=+.. ...|.+|+++|+++..+| .|+-++.....
T Consensus 4 qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL-----~~kL~m~~~~~ 51 (60)
T PF14916_consen 4 QVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDL-----TFKLIMKQPSS 51 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ceeeeecCCCC
Confidence 455567777776655544 566788888888888888 56655544433
No 58
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=67.47 E-value=16 Score=28.49 Aligned_cols=33 Identities=9% Similarity=-0.052 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
+..|+++...++++++.|+++.+.|+..+..++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888888888888888888876666554
No 59
>KOG2021|consensus
Probab=67.44 E-value=14 Score=38.55 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHhHHhhHHHhhh
Q psy14439 120 KATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFST 199 (245)
Q Consensus 120 Ka~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~v~~r~~~~~kf~if~~i~~~lf~s 199 (245)
...+=+.|++|+..|+ .--.+++++++-+.+. ...|-.|||-||.+++.+=+.
T Consensus 18 dsa~KqqA~~y~~qiK--------------sSp~aw~Icie~l~~~-------------ts~d~vkf~clqtL~e~vrek 70 (980)
T KOG2021|consen 18 DSATKQQAIEYLNQIK--------------SSPNAWEICIELLINE-------------TSNDLVKFYCLQTLIELVREK 70 (980)
T ss_pred cHHHHHHHHHHHHhhc--------------CCccHHHHHHHHHHhh-------------cccchhhhhhHHHHHHHHHHh
Confidence 4567788999998884 3334444443322211 145779999999999999999
Q ss_pred hcCCCCCChHHHHHhHHHHhhhc
Q psy14439 200 FCNVGVSNFSELSACVFSWLEEY 222 (245)
Q Consensus 200 f~~vs~~s~~~l~~~~~~W~~~~ 222 (245)
|+..++.-..-+.-++.+|+...
T Consensus 71 yne~nl~elqlvR~sv~swlk~q 93 (980)
T KOG2021|consen 71 YNEANLNELQLVRFSVTSWLKFQ 93 (980)
T ss_pred hccCCHHHHHHHHHHHHHHHHHH
Confidence 99877777778888999999654
No 60
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=66.84 E-value=13 Score=27.59 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|..|++++.+|+++++.|+.|++.++
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888887776666653
No 61
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=66.67 E-value=55 Score=30.77 Aligned_cols=126 Identities=19% Similarity=0.354 Sum_probs=73.5
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 94 IKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKL--------EEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 94 In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l--------~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
.+..+++|.++...| +.-+.+-...++.|....+++ .+.++.|++++.+.+......+..
T Consensus 23 Y~qKleel~~lQ~~C------------~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~ 90 (330)
T PF07851_consen 23 YKQKLEELSKLQDKC------------SSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEAF 90 (330)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 677778888887776 334445555666666666665 455666777777766666666666
Q ss_pred HHhcCC-----CCCccc---------cccccc-hhhHHhHHhhHHHhhhhcC--CCCCChHHHHHhHHHHhhhcCChhhh
Q psy14439 166 VKAQQT-----PLGQTE---------ARLSDE-VKFQVFQSIMDELFSTFCN--VGVSNFSELSACVFSWLEEYCKPQTL 228 (245)
Q Consensus 166 ~~~~~~-----~~~~v~---------~r~~~~-~kf~if~~i~~~lf~sf~~--vs~~s~~~l~~~~~~W~~~~c~~~~l 228 (245)
++.... ..|.|. -+..|+ .||..+..|+=-+|.--+. ++-.=.+.+....+-|. +|.+ ++
T Consensus 91 LPkkNGlyL~liLGnVNVsll~k~~kf~yKdEYEkFKl~~tii~l~~~~~~~~~~~~r~~d~~~~f~lvwy--Y~tL-ti 167 (330)
T PF07851_consen 91 LPKKNGLYLRLILGNVNVSLLSKQAKFKYKDEYEKFKLYLTIILLLFAVALLFLLNYRVLDQLFNFLLVWY--YCTL-TI 167 (330)
T ss_pred CCCCCCcccceecccccceecccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH--HHHH-HH
Confidence 554421 012232 223333 3455554444444433233 34444777888888887 6776 68
Q ss_pred HHHHHH
Q psy14439 229 KQNIAS 234 (245)
Q Consensus 229 r~~v~~ 234 (245)
|+.++-
T Consensus 168 RE~IL~ 173 (330)
T PF07851_consen 168 RESILI 173 (330)
T ss_pred HHHhhc
Confidence 887764
No 62
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.45 E-value=30 Score=24.09 Aligned_cols=25 Identities=16% Similarity=0.326 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
|..++.+++++.+.++.+++-|..|
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665544
No 63
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.20 E-value=53 Score=30.52 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 90 RRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 90 RR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
|...|+..+..|+.++..+..- ....|.++-+=|..+..++.....++..++.++.+|
T Consensus 180 ~~~~L~~e~~~L~~~~~e~~~~--------d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l 237 (312)
T smart00787 180 RKDALEEELRQLKQLEDELEDC--------DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQEL 237 (312)
T ss_pred HHHHHHHHHHHHHHhHHHHHhC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666655554321 133444444444444444444443333333333333
No 64
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=64.71 E-value=6.8 Score=33.23 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy14439 125 QKSIDYIQFLVQQ---KKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 125 ~kAi~YI~~Lq~~---~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
..||+---.|+.+ ++.|++++++|+.|+.+|+.+.
T Consensus 10 N~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 10 NQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 3345566666666666665443
No 65
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=64.68 E-value=30 Score=27.18 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
..+=|..|+.....+.+|..+|+-|.+.|+......+
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666666666666666666666655444433
No 66
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.11 E-value=54 Score=30.71 Aligned_cols=81 Identities=22% Similarity=0.192 Sum_probs=53.4
Q ss_pred hHHHHHH--HHHHHHHHHHHHhccCCCCCCCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 83 HTQAEQK--RRDAIKKGYDSLQDLVPTCHQTD--SSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 83 H~~~Erk--RR~~In~~f~~L~~lVP~~~~~~--~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
...+|+- |...++..+.+|--......+.. +...+.+=+.+|..+-+-.+.|+.++..|..++..++.++.-|+..
T Consensus 29 KlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~ 108 (319)
T PF09789_consen 29 KLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREK 108 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 4445543 44667777766663333222110 0112344578899999999999999999999999998888888766
Q ss_pred HHHHH
Q psy14439 159 QANYD 163 (245)
Q Consensus 159 ~~~~e 163 (245)
.+.+.
T Consensus 109 la~~r 113 (319)
T PF09789_consen 109 LARQR 113 (319)
T ss_pred HHhhh
Confidence 55544
No 67
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=62.31 E-value=44 Score=23.33 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
-|..|-.+++.|..++.+|..+|..|+......
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788889999999999999999988765443
No 68
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=61.78 E-value=32 Score=25.42 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 119 SKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 119 sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
.|..-|+.+++-++.-.....++.+++..+...++.|+....+.+.++.
T Consensus 18 ~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 18 DKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4777888888888877777777888888888888888877777777764
No 69
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=61.31 E-value=71 Score=24.37 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 120 KATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 120 Ka~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
++.-|.+.++.+.....+.+.+-.++.++..+|..|+.....+....+
T Consensus 43 ~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk 90 (99)
T PF10046_consen 43 IAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSK 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666677777788887776665555443
No 70
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=61.25 E-value=36 Score=31.01 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=28.7
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC
Q psy14439 124 LQKSIDYIQ---FLVQQKKKLEEERNGLRKEVVA----LRIMQANYDIMVKAQQ 170 (245)
Q Consensus 124 L~kAi~YI~---~Lq~~~~~l~~e~~~L~~ei~~----L~~~~~~~e~~~~~~~ 170 (245)
.....+|+. .|++|+++|++|+.+|+.+... |+.+..++..++.-..
T Consensus 58 ~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 58 FDGISENLKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 334444444 4668888888887777554443 5555666666665543
No 71
>KOG4196|consensus
Probab=60.43 E-value=38 Score=27.71 Aligned_cols=64 Identities=30% Similarity=0.412 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 84 TQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQAN 161 (245)
Q Consensus 84 ~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~ 161 (245)
...-||||..=|.||..= |. ...+..-.-|++.-. .|++++++|.+|+.+++.|+++++.....
T Consensus 50 vrlKQrRRTLKNRGYA~s------CR-----~KRv~Qk~eLE~~k~---~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQS------CR-----VKRVQQKHELEKEKA---ELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHhhhhHHHH------HH-----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888777777642 21 111222233333322 35666677777777777777777644333
No 72
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.32 E-value=87 Score=28.94 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhccCCCC
Q psy14439 90 RRDAIKKGYDSLQDLVPTC 108 (245)
Q Consensus 90 RR~~In~~f~~L~~lVP~~ 108 (245)
|...|...+..|+.++..+
T Consensus 185 ~~~~L~~e~~~Lk~~~~e~ 203 (325)
T PF08317_consen 185 RKAELEEELENLKQLVEEI 203 (325)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4455566666666665543
No 73
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=60.12 E-value=63 Score=23.36 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q psy14439 92 DAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERN--GLRKEVVALR 156 (245)
Q Consensus 92 ~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~--~L~~ei~~L~ 156 (245)
..|+..+.+++.-.|... ..+..+| -|++....+.+...+.....+ +++++++.|.
T Consensus 28 ~~i~~~i~~~~~~~~~~~--------~~~~~vl-aaLnla~e~~~~~~~~~~~~~~~~l~~~i~~L~ 85 (89)
T PF05164_consen 28 ELINEKINEIKKKYPKLS--------PERLAVL-AALNLADELLKLKRELDELEELERLEERIEELN 85 (89)
T ss_dssp HHHHHHHHHHCTTCCTSS--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568999999999988653 3455555 466666666665555555544 8888888875
No 74
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=59.96 E-value=72 Score=32.27 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCC---CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 88 QKRRDAIKKGYDSLQDLVPTCHQTDS---SGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 88 rkRR~~In~~f~~L~~lVP~~~~~~~---~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
.++...++..+..|+...+....... .....+...+....-+.+..+.++..++.+++++|++++++|+..+.
T Consensus 49 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~ 124 (646)
T PRK05771 49 RSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIE 124 (646)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556688888888888776321100 01112222333334445555666666666666666666665554443
No 75
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=59.23 E-value=44 Score=24.94 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.+|..++++.-+.+.-|+-||++|+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 76
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.01 E-value=24 Score=25.25 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQAN 161 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~ 161 (245)
-|..|.+.+.+++.++.+|++++..|......
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777777777777544443
No 77
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=58.38 E-value=12 Score=26.17 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
-.++.+.++++++++.+++|+++|
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777777777777777765
No 78
>PHA03386 P10 fibrous body protein; Provisional
Probab=58.23 E-value=54 Score=25.25 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQFLVQQKKKLEEERNGLRK----------EVVALRIMQANYDIMVK 167 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~----------ei~~L~~~~~~~e~~~~ 167 (245)
|||-.||..-.+-|+.+-.++..|+..+..++. ++..|.....+.+.++-
T Consensus 1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~dv~~n~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 1 MSKPSVLTQILDAVQEVDTKVDALQTQLNGLEEDSQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 578888888888888877777777777777764 45555555566666654
No 79
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=57.71 E-value=25 Score=27.64 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+..++.++.+|+.++.+|+.|++-|+..
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666677777777777777766644
No 80
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=57.69 E-value=68 Score=27.50 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhccCC
Q psy14439 88 QKRRDAIKKGYDSLQDLVP 106 (245)
Q Consensus 88 rkRR~~In~~f~~L~~lVP 106 (245)
--|++-.+.+|++|-.=|-
T Consensus 58 pvr~~ly~~~F~ELIRQVT 76 (189)
T PF10211_consen 58 PVREELYSQCFDELIRQVT 76 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467777779998866664
No 81
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=57.31 E-value=16 Score=34.34 Aligned_cols=108 Identities=24% Similarity=0.270 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhcCC---CC--------------Ccc
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQAN-------------YDIMVKAQQT---PL--------------GQT 176 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~-------------~e~~~~~~~~---~~--------------~~v 176 (245)
.|+-.-.||+|+..|+.|++.|+.|++.|+..... ++.+++.... +. +.+
T Consensus 30 ~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~Re~vlfq~d~~~ld~~lLARv 109 (420)
T PF07407_consen 30 SIDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMRELVLFQRDDLKLDSVLLARV 109 (420)
T ss_pred chhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHH
Confidence 46666779999999999999999999998765332 1112111100 00 000
Q ss_pred c--cccccchhhHHhHHhhHHHhhhhcC-----------CCCCChHHHHHhHHHHhhhcCChhhhHHHHHH
Q psy14439 177 E--ARLSDEVKFQVFQSIMDELFSTFCN-----------VGVSNFSELSACVFSWLEEYCKPQTLKQNIAS 234 (245)
Q Consensus 177 ~--~r~~~~~kf~if~~i~~~lf~sf~~-----------vs~~s~~~l~~~~~~W~~~~c~~~~lr~~v~~ 234 (245)
+ -|..++--|--|..-+.+|.-+|-+ |-++++.++..++..-+.-.-.++.|+..|..
T Consensus 110 e~LlRlK~e~~~~~f~k~~~~lIg~Yf~D~v~~~~L~~yv~t~~~~~~~~~~~~r~~~~i~~~~l~~~v~~ 180 (420)
T PF07407_consen 110 ETLLRLKDEQPSAEFDKDSHPLIGRYFNDAVDNEVLYKYVRTNNHNDIADFISNRVLMDIQNNDLLNRVIE 180 (420)
T ss_pred HHHHHhhhhcccccccchhhhHHhhhcCccchhHHHHHHHHhccchHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 0 1222222222255556666555532 34666777777776667666777777776653
No 82
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=57.07 E-value=48 Score=27.09 Aligned_cols=41 Identities=29% Similarity=0.320 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERN-------GLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~-------~L~~ei~~L~~~~~~~e~~~~ 167 (245)
-|..|..||+..++..+++- .|.+|++.|+..+..++.++.
T Consensus 11 LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeiln 58 (134)
T PF15233_consen 11 LINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILN 58 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35666666666666555543 356666666555555554443
No 83
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=56.87 E-value=68 Score=23.15 Aligned_cols=31 Identities=29% Similarity=0.279 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQAN 161 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~ 161 (245)
+..+..+...++.+++.++.|...|+.++..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777777655443
No 84
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=56.77 E-value=33 Score=27.15 Aligned_cols=33 Identities=30% Similarity=0.250 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
.+.+..|++++++|+||.+-|+-+|+-|-.|.+
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999998866644
No 85
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=56.38 E-value=46 Score=23.46 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
|..|+..+..|+.|+.+++.++..=+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666554433
No 86
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.21 E-value=28 Score=23.06 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.|..+...|..|++.|+.||..|+
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555553
No 87
>KOG3584|consensus
Probab=55.57 E-value=16 Score=33.87 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
--+|||.|+.++.-|+.+.+.|-+|+..||.
T Consensus 310 KKEYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 310 KKEYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred HhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 3589999999999999999999888888763
No 88
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=55.30 E-value=39 Score=26.33 Aligned_cols=10 Identities=40% Similarity=0.404 Sum_probs=5.8
Q ss_pred HHHHHHHHHH
Q psy14439 148 LRKEVVALRI 157 (245)
Q Consensus 148 L~~ei~~L~~ 157 (245)
-+++|+.|+.
T Consensus 88 ~~k~i~~le~ 97 (100)
T PF04568_consen 88 HRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666643
No 89
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=54.13 E-value=54 Score=27.72 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
..-+.|+.+..+|+.+++.|+.|++.|...
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665555443
No 90
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=53.72 E-value=32 Score=25.50 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
++.|.+++++|++++..|+++|-.++..
T Consensus 4 L~~l~~~k~~Le~~L~~lE~qIy~~Et~ 31 (80)
T PF09340_consen 4 LKELLQKKKKLEKDLAALEKQIYDKETS 31 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888644
No 91
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=53.50 E-value=11 Score=31.92 Aligned_cols=40 Identities=18% Similarity=0.374 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+-+.++|+.-++--..|+.++++|++|+..|++|+ .++..
T Consensus 13 IERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl-~V~ek 52 (166)
T PF04880_consen 13 IERNALLESELDEKENLREEVQRLKDELRDLKQEL-IVQEK 52 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHCH--------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45678999999999999999999999999999999 55433
No 92
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=53.38 E-value=1.1e+02 Score=24.09 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.++++.+.|..+...|+.||..|+
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555555555555554
No 93
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=52.97 E-value=51 Score=25.06 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 119 SKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 119 sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.|+..|.+.. =..-+.++.+|+.++..|.+|++.|+
T Consensus 34 ~KV~~LKksY--e~rwek~v~~L~~e~~~l~~E~e~L~ 69 (87)
T PF12709_consen 34 TKVKALKKSY--EARWEKKVDELENENKALKRENEQLK 69 (87)
T ss_pred HHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788887643 23344444555555555555555544
No 94
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=52.75 E-value=74 Score=23.77 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
|..||.....|-.+++..+.|.+.|
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL 49 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKL 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433333333333333
No 95
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=52.71 E-value=46 Score=22.39 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEV 152 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei 152 (245)
--.++-++|+.|.+....+..+++.|+.++
T Consensus 17 FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 17 FQNKVTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677888888877666666666665543
No 96
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.69 E-value=61 Score=29.58 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.-|..++.++.+.+.++..|+.+|+.|+.-+..-+..+
T Consensus 66 ~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 66 SKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666777777777777777766655544444
No 97
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.66 E-value=52 Score=32.39 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
.|.--|.-++.|+.+.+.+..+++.|++|.+.|+..
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555555555555555555555555443
No 98
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=52.61 E-value=88 Score=23.87 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=27.6
Q ss_pred HHHHHHHHhccCCCCC--CCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 94 IKKGYDSLQDLVPTCH--QTDS-SGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 94 In~~f~~L~~lVP~~~--~~~~-~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.+...++|..+=|... ..-. -=.+.++..+...=-+.+..|..+.+.+..++..+.+++.+|+
T Consensus 32 ~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 32 NKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677766654421 0000 0012334444433334444444445555555555555555444
No 99
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=52.12 E-value=88 Score=28.94 Aligned_cols=65 Identities=11% Similarity=0.109 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHhHHhhHHHh
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELF 197 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~v~~r~~~~~kf~if~~i~~~lf 197 (245)
+-|.+|+....+....+..|+.++.+|+.++...+..+.+-..+.+..+.+ .+..+|+.+.+.+.
T Consensus 138 ~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgkda~gk~~----tR~~~q~k~~ke~~ 202 (308)
T PF06717_consen 138 YRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGKDANGKQL----TRYEVQRKLLKERD 202 (308)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcc----cHHHHHHHHHHHHH
Confidence 446677777778888888888888888888777777777766666666644 44788999988773
No 100
>PRK14011 prefoldin subunit alpha; Provisional
Probab=51.84 E-value=99 Score=25.50 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=25.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQ----FLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 123 IL~kAi~YI~----~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
-+.+|++|++ .|+...+++.+.++.+..++.+|...
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777765 66666777777777777777777644
No 101
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=51.20 E-value=26 Score=30.35 Aligned_cols=48 Identities=21% Similarity=0.361 Sum_probs=37.1
Q ss_pred hHHhhHHHhhhhcC--CCC-CChHHHHHhHHHHhhhcCChhhhHHHHHHHHHHh
Q psy14439 189 FQSIMDELFSTFCN--VGV-SNFSELSACVFSWLEEYCKPQTLKQNIASVLSRI 239 (245)
Q Consensus 189 f~~i~~~lf~sf~~--vs~-~s~~~l~~~~~~W~~~~c~~~~lr~~v~~~l~~l 239 (245)
...-+..||=+|+. +++ .+|.++......=|.++ +.||+.|...|+.|
T Consensus 147 l~~QlWslLP~FC~~P~D~~~~F~~~a~~L~~~L~~~---~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 147 LVQQLWSLLPGFCNYPTDLAESFPSFAKLLGNALYDQ---PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHHhHHhcCCcccHHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHHH
Confidence 33445667889997 665 67888877777777665 89999999999987
No 102
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.76 E-value=71 Score=21.12 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
.|+..-..|..+.+.|.+|.+.|+.++..+...
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777778888888888888887766555443
No 103
>KOG2264|consensus
Probab=50.30 E-value=56 Score=33.21 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=15.5
Q ss_pred HhhhcCChhhhHHHHHHHHHHh
Q psy14439 218 WLEEYCKPQTLKQNIASVLSRI 239 (245)
Q Consensus 218 W~~~~c~~~~lr~~v~~~l~~l 239 (245)
-+.++-+|+.|+|+=++.|-.|
T Consensus 243 lvge~q~P~~l~p~eleklysl 264 (907)
T KOG2264|consen 243 LVGEIQSPVVLTPAELEKLYSL 264 (907)
T ss_pred EeccccCCCcCChHhhhhhhcC
Confidence 3457778888888877776544
No 104
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=50.12 E-value=64 Score=25.82 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
.+++.|+.+.++++++++.|..++..|+..+..+
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444444444444333
No 105
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.94 E-value=73 Score=25.20 Aligned_cols=33 Identities=30% Similarity=0.228 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
.+-|..|++....+.+|...|+-|.+.|+....
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666666555554433
No 106
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=49.80 E-value=1.1e+02 Score=23.08 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=34.2
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 93 AIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 93 ~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
.|...|+.|...|-. +..+..--...-+-|+.|.....+|.+++.....+...|+......
T Consensus 12 rL~~aid~LE~~v~~---------r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 12 RLEAAIDRLEKAVDR---------RLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREV 72 (89)
T ss_pred HHHHHHHHHHHHHHH---------HHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 366777777776654 1111111133334456666677777777777766666666554433
No 107
>KOG2264|consensus
Probab=49.29 E-value=48 Score=33.67 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
-+..|+-++++|+.++++++..||+|+..+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i 123 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLI 123 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444433
No 108
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=48.91 E-value=80 Score=21.19 Aligned_cols=27 Identities=33% Similarity=0.298 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
..-+.....|+.++..|..++..|+..
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~ 47 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 109
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=48.80 E-value=44 Score=31.08 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy14439 134 LVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPL 173 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~ 173 (245)
|+.+.+++++++..++.|...++.++..++..+...+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPP 43 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444555555555555555554455555555555554
No 110
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=48.67 E-value=60 Score=21.78 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEV 152 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei 152 (245)
..|++++..|+.+++.|+.-.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444443
No 111
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=48.25 E-value=60 Score=28.37 Aligned_cols=38 Identities=21% Similarity=0.108 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
-|...|....+.++.++..++++|+.++..+...+..+
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~ 173 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEA 173 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788888899999999999999999977766554443
No 112
>KOG4368|consensus
Probab=48.16 E-value=80 Score=32.12 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=30.9
Q ss_pred CChHHHHHhHHHHhhhcCChhhhHHHHHHHHHHhhh
Q psy14439 206 SNFSELSACVFSWLEEYCKPQTLKQNIASVLSRIAN 241 (245)
Q Consensus 206 ~s~~~l~~~~~~W~~~~c~~~~lr~~v~~~l~~l~~ 241 (245)
+.-.+++...-.|+=++|+-+.+++++++-|++--|
T Consensus 116 ~c~kd~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~ 151 (757)
T KOG4368|consen 116 TCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRIT 151 (757)
T ss_pred HHhHHHHHHhhhhhhhcCCCchHHHHHHHHHHhhhc
Confidence 445678888899999999999999999999987544
No 113
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.83 E-value=50 Score=29.24 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
.|+++|+..+..+++++..|+++++.++.....+
T Consensus 70 ~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 70 VYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888888888888776554443
No 114
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=47.61 E-value=18 Score=30.63 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHhHH-hhHHH
Q psy14439 118 LSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQS-IMDEL 196 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~v~~r~~~~~kf~if~~-i~~~l 196 (245)
.+...+-....+-++.|+++...++++++.|+++..++..........+.-.+...-.+.--..--+-||.|+. ||+|.
T Consensus 46 ~~~~~~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf~e~sWDvMEPV 125 (180)
T PF04678_consen 46 LPLLNVEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLALLVVQFGILARLTFWEYSWDVMEPV 125 (180)
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhH
Q ss_pred --hhhh
Q psy14439 197 --FSTF 200 (245)
Q Consensus 197 --f~sf 200 (245)
|-+|
T Consensus 126 TYfv~~ 131 (180)
T PF04678_consen 126 TYFVGY 131 (180)
T ss_pred HHHHhH
No 115
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=47.55 E-value=75 Score=21.18 Aligned_cols=34 Identities=24% Similarity=0.072 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
-|..|-+-.+++++.+.+-.+|+..|+..+.+++
T Consensus 9 ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~eC~ 42 (45)
T PF11598_consen 9 QLSELNQMLQELKELLRQQIKETRFLRNTIMECQ 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555556666666666777777776665553
No 116
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=47.37 E-value=85 Score=29.07 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
..+-++.|+++.+.+.+++..|++|.++|...+..++
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555444444443333
No 117
>KOG0709|consensus
Probab=47.16 E-value=1.3e+02 Score=29.74 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 84 TQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 84 ~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
.+-|.|||. |+.++.|..-|-.+.... +.|++++++|+.+...|-.++..|+..
T Consensus 262 SAQESRrkK--keYid~LE~rv~~~taeN-------------------qeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 262 SAQESRRKK--KEYIDGLESRVSAFTAEN-------------------QELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred hhHHHHHhH--hhHHHHHhhhhhhcccCc-------------------HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344666665 888899988887765432 457777777777777777776666544
No 118
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=47.16 E-value=1.1e+02 Score=24.60 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=36.7
Q ss_pred HHHHHHHHhccCCCCCC--CC-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 94 IKKGYDSLQDLVPTCHQ--TD-SSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 94 In~~f~~L~~lVP~~~~--~~-~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+...+.+|..+-+...- .. +-=.|++|-.++..-=+-+..|.-+++.|+.+.+.++.++++|+.+
T Consensus 39 ~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 39 IEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665554210 00 0012456666666666666666666666666666666666666544
No 119
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=46.76 E-value=1.1e+02 Score=27.41 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 136 QQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
....++.+|+++|++|+..|+.....++.+.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~ 99 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLE 99 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888887777665443
No 120
>PRK11637 AmiB activator; Provisional
Probab=46.74 E-value=1.2e+02 Score=29.01 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
..++++...++.++..++.+|..++.
T Consensus 92 ~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 92 RETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444333
No 121
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=46.66 E-value=63 Score=23.99 Aligned_cols=32 Identities=25% Similarity=0.101 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
|+--+.|+.+....++|+.+|..-+..|+...
T Consensus 4 i~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KL 35 (76)
T PF11544_consen 4 IKQNKELKKKLNDKQEEIDRLNILVGSLRGKL 35 (76)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556665555555554443
No 122
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=46.39 E-value=61 Score=25.33 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
.++.|+++...++..+..|+..+.+++..+.-+
T Consensus 7 q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 7 ELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555444333
No 123
>KOG4196|consensus
Probab=46.36 E-value=1.2e+02 Score=24.94 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
.|+.++..|..+++.|++|+..+..+.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRREL 104 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 124
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=46.22 E-value=73 Score=23.34 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
+++.+..++-+|+-++..|+++++.++....
T Consensus 37 ~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 37 SIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666554433
No 125
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=46.02 E-value=96 Score=25.78 Aligned_cols=44 Identities=9% Similarity=0.048 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
...+.||+.|+.+.+.+..|+.+|......++....++.+.+..
T Consensus 43 ~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 43 DNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888888777777666666555543
No 126
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=45.97 E-value=11 Score=29.57 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
|..-++.+..|..++..|..++..|+.++..++.....+..
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~ 67 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQR 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 44444444555555555555555555555555444333333
No 127
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=45.91 E-value=95 Score=24.20 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHhHHhh
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIM 193 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~v~~r~~~~~kf~if~~i~ 193 (245)
.++++.|+.--..|..+++.|..+++.|.. + +..-..++.||. .||+.|-
T Consensus 13 Le~L~~l~~lS~~L~~qle~L~~kl~~m~d---g------------~e~Va~Vl~NW~-nV~r~Is 62 (103)
T PF08654_consen 13 LEALKQLRDLSADLASQLEALSEKLETMAD---G------------AEAVASVLANWQ-NVFRAIS 62 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c------------cHHHHHHHHhHH-HHHHHHH
Confidence 345556655555555555555555555431 1 122346778898 7887664
No 128
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=45.77 E-value=91 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERN 146 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~ 146 (245)
..++.+=-.-|+.+..++..++.++.
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~ 40 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELA 40 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 129
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=45.21 E-value=70 Score=22.54 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 138 KKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 138 ~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
+.+|++.+..|+.||..++..+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666555554443
No 130
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=45.21 E-value=57 Score=23.03 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
-|+.++.+|++++.+|+.|..-|
T Consensus 18 vLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 18 VLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 131
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=44.91 E-value=67 Score=25.23 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
...+..|+.+...++.++..|+..+.++...+..++.+.+
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00584 5 AAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666777777777777777777777766666666644
No 132
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=44.79 E-value=78 Score=24.26 Aligned_cols=39 Identities=26% Similarity=0.450 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
+.+|++|+ ..+.+.+++.++.+++++..++..+..++..
T Consensus 75 ~~eA~~~l---~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 113 (120)
T PF02996_consen 75 LEEAIEFL---KKRIKELEEQLEKLEKELAELQAQIEQLEQT 113 (120)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 4445555555555555555555444444433
No 133
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=44.74 E-value=14 Score=29.05 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
.=+||..|..+...|..++..|+.++..|+.....|...
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~ 61 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREE 61 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 458999999999999999999999999987665555433
No 134
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.60 E-value=1.1e+02 Score=27.61 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 134 LVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
|..++.+++.+.+.++.+++.|+...+.++.+.+-
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555555555666666666666654
No 135
>PHA01750 hypothetical protein
Probab=44.47 E-value=1.1e+02 Score=22.21 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 142 EEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 142 ~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
+.|+..|+.|++++++.+-|+++.+.
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~ 66 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVE 66 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45777788888888887777776654
No 136
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=44.40 E-value=83 Score=24.91 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
..|.++|+.+..+.+++-+|.+.|.+.+..|
T Consensus 38 ~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l 68 (109)
T PF11690_consen 38 KEAYDFIDKVVDQHQRYCDERRKLRKKIQDL 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889989888888888888888888887
No 137
>PRK11637 AmiB activator; Provisional
Probab=44.19 E-value=90 Score=29.83 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+-.-|..++++..++++++..++.+++.++
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555444
No 138
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=44.09 E-value=61 Score=24.39 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 83 HTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 83 H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+..-|+.-|..+..++..-...+|... ..+.+ -++.|-.++..++.++..|++.+..|.
T Consensus 23 ~L~~E~~~r~aLe~al~~~~~~~~~~~------~~lp~---------~~keLL~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 23 QLQEEQDLRRALEKALGRSSGSLPSSP------SSLPK---------KAKELLEEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCCcc------ccCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667767666555323222211 11222 135566777777777777777777773
No 139
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=43.82 E-value=39 Score=24.39 Aligned_cols=13 Identities=62% Similarity=0.887 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy14439 140 KLEEERNGLRKEV 152 (245)
Q Consensus 140 ~l~~e~~~L~~ei 152 (245)
+|.++++.|++|+
T Consensus 51 ~Lk~E~e~L~~el 63 (69)
T PF14197_consen 51 KLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 140
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=43.66 E-value=1.7e+02 Score=23.63 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=51.9
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 76 ~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
...-+..|..+|..=..-++..++.+.+.|..... =...+..+-+-|..|++....-...+..-+.++..|
T Consensus 42 ~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~---------i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L 112 (142)
T PF04048_consen 42 YQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQ---------ILSSISESQERIRELKESLQEAKSLLGCRREELKEL 112 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34456778899999999999999999999887532 134455566666666666665555444445555555
Q ss_pred HHHHHHHHHH
Q psy14439 156 RIMQANYDIM 165 (245)
Q Consensus 156 ~~~~~~~e~~ 165 (245)
...-..|..+
T Consensus 113 ~~~s~~~~~m 122 (142)
T PF04048_consen 113 WQRSQEYKEM 122 (142)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 141
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.65 E-value=1.1e+02 Score=27.01 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLR 149 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~ 149 (245)
--.||..++++...++++++.++
T Consensus 75 l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 75 LERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666665555543
No 142
>KOG0971|consensus
Probab=43.07 E-value=1.6e+02 Score=31.67 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
+-+|+.+-+..++.++.+|....+.|.++++.++..+..++..+-|-
T Consensus 397 d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 397 DHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666666666666666666666555555443
No 143
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=42.52 E-value=66 Score=26.23 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 83 HTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSI----DYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 83 H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi----~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
...+|=++=..++.+|..=........ ..-.+-+.-++..+ --++.|+.+...-..|+..|+++++++...
T Consensus 49 ~vVsEL~~Ls~LK~~y~~~~~~~~~~~-----~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 49 AVVSELRRLSELKRRYRKKQSDPSPQV-----ARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRA 123 (131)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccc-----cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777765444332100 00111112222111 236778888888889999999999888765
Q ss_pred HHHHH
Q psy14439 159 QANYD 163 (245)
Q Consensus 159 ~~~~e 163 (245)
..+++
T Consensus 124 n~~Le 128 (131)
T PF04859_consen 124 NKSLE 128 (131)
T ss_pred HHHhh
Confidence 54443
No 144
>PRK15396 murein lipoprotein; Provisional
Probab=42.52 E-value=1.1e+02 Score=22.72 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
+..|..+++.|..++++|..++..++...
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~ 55 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDV 55 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666665543
No 145
>KOG4005|consensus
Probab=42.51 E-value=2.6e+02 Score=25.34 Aligned_cols=79 Identities=23% Similarity=0.273 Sum_probs=52.9
Q ss_pred CCcchhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy14439 71 SPLNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQ----FLVQQKKKLEEERN 146 (245)
Q Consensus 71 ~~~~~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~----~Lq~~~~~l~~e~~ 146 (245)
+...+..+||-....+-|.-|++=|.++.++-..|-.+. ..-.||+.-.+-++ .|--++.++..+++
T Consensus 65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~---------een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLT---------EENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344445567777778888899999999999888887763 24556665555443 34455666666777
Q ss_pred HHHHHHHHHHHH
Q psy14439 147 GLRKEVVALRIM 158 (245)
Q Consensus 147 ~L~~ei~~L~~~ 158 (245)
.|++++.+|+..
T Consensus 136 ~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 136 LLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHhhHHH
Confidence 777777777543
No 146
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=42.46 E-value=87 Score=29.96 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPL 173 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~ 173 (245)
++.|+.+++.++.++..++.+...++.+...++..+...+.+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (398)
T PTZ00454 24 LKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVP 66 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3334444444444444444444444444444444444444444
No 147
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=42.43 E-value=80 Score=22.76 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGL 148 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L 148 (245)
-|+.|+.-|..|+.++..+..+++.+
T Consensus 41 ~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 41 QLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555554443
No 148
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=42.36 E-value=1.6e+02 Score=29.72 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=21.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q psy14439 117 KLSKATVLQKSIDYIQFLVQQKKKLE--------------EERNGLRKEVVALRIM 158 (245)
Q Consensus 117 K~sKa~IL~kAi~YI~~Lq~~~~~l~--------------~e~~~L~~ei~~L~~~ 158 (245)
-..|..||.+|-.....+...-+.|+ .++..|-++|.+|+..
T Consensus 130 ~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~q 185 (552)
T COG1256 130 TAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQ 185 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777766544444433333332 4445566666666433
No 149
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=42.25 E-value=92 Score=29.38 Aligned_cols=60 Identities=12% Similarity=0.021 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 86 AEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 86 ~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
+.+.+=++++..+.++..-+-..... . ...+...|++++++|++|+.+|+.++..++...
T Consensus 28 ~~~~~~e~~r~~~~d~~ap~~~~~~~---------p-----~~~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~ 87 (337)
T PRK14872 28 LPRPVYEKIQDTFVSLCSKFFPKFRQ---------G-----PSSHALVLETENFLLKERIALLEERLKSYEEAN 87 (337)
T ss_pred CCcHHHHHHHHhhHHHhchhhHHHhC---------c-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777777766554431100 0 114557899999999999999988887766443
No 150
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=42.21 E-value=85 Score=25.98 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
|+.|+.++.++.++++.-+.++++|......++
T Consensus 3 ~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~k 35 (142)
T PF08781_consen 3 CEELEEEKQRRRERIKKKKEQLQELILQQVAFK 35 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777766666665555555544443333
No 151
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=42.04 E-value=44 Score=31.55 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHhHHhhHHHhhhhcCCCCCChH-HHHHh
Q psy14439 136 QQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFSTFCNVGVSNFS-ELSAC 214 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~v~~r~~~~~kf~if~~i~~~lf~sf~~vs~~s~~-~l~~~ 214 (245)
.+...|++|..+|++|+++|++....+|....... -.+...+-+.+|.--..||+.+ .. .|=+.--+ +|-..
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~----V~E~vet~dv~~d~i~Kimnk~-Re--~vlfq~d~~~ld~~ 104 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSH----VCEDVETNDVIYDKIVKIMNKM-RE--LVLFQRDDLKLDSV 104 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHH-hh--hhhhccccccccHH
Confidence 46778999999999999999999988877664321 1111111244666666677663 10 12222222 44455
Q ss_pred HHHHhhhcCChh
Q psy14439 215 VFSWLEEYCKPQ 226 (245)
Q Consensus 215 ~~~W~~~~c~~~ 226 (245)
+++-+|-.|.+-
T Consensus 105 lLARve~LlRlK 116 (420)
T PF07407_consen 105 LLARVETLLRLK 116 (420)
T ss_pred HHHHHHHHHHhh
Confidence 555555555443
No 152
>KOG3048|consensus
Probab=41.78 E-value=93 Score=25.96 Aligned_cols=57 Identities=30% Similarity=0.308 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CC-----------CccccccccchhhHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQT----PL-----------GQTEARLSDEVKFQV 188 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~----~~-----------~~v~~r~~~~~kf~i 188 (245)
.+|.+-.++++.|++-|..-+.+|+..+..|+..+-+-.. +. -||+.+..|+-||-|
T Consensus 16 eQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~eGk~~LVPLTsSlYVPGkl~d~~k~lV 87 (153)
T KOG3048|consen 16 EQLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAANEGKKLLVPLTSSLYVPGKLSDNSKFLV 87 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEEEecccceeccceeccccceeE
Confidence 4566666777788888888888888777766665544321 11 268899999999877
No 153
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.68 E-value=63 Score=32.88 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
-++.|+.++..|+.++.+|+++|+.|+..
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~ 458 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESE 458 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555443
No 154
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.52 E-value=68 Score=32.63 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.-|+.|....++|++++..|+.++++|+..+..++..+
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777788888888888777777766554
No 155
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.32 E-value=76 Score=28.53 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
-.|+++++.|+.|+.+||-+||.+.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~ 81 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQ 81 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3556666666666666666666553
No 156
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=41.05 E-value=2.7e+02 Score=24.98 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+|..=-..|..|+....++...++.|++|...|......++..+
T Consensus 209 ~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l 252 (254)
T PF15458_consen 209 CLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELL 252 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334445566667777777777777777777766666655554
No 157
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=40.66 E-value=70 Score=29.47 Aligned_cols=34 Identities=32% Similarity=0.308 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
..|..+...|+++.++|+.|+++|+......++.
T Consensus 35 ~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f 68 (308)
T PF11382_consen 35 DSLEDQFDSLREENDELRAELDALQAQLNAADQF 68 (308)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555444444443433
No 158
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=40.64 E-value=1.3e+02 Score=26.23 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
..+|.+.+..++..|.+++..|-++...|+..+..++.
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~ 191 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEK 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999999999999999888776654
No 159
>KOG3119|consensus
Probab=40.43 E-value=55 Score=29.64 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
.+...-|..|.+++..|..++++|++|+..|+.....+..
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~ 257 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455567889999999999999999999999876655543
No 160
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=40.42 E-value=1e+02 Score=24.03 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
-+.+|++|+ ....+.+.+.++.|.+.+..++.........+
T Consensus 83 ~~~eA~~~l---~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 83 DAEEAIEFL---KKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred cHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566554 45566666666666666666655544444433
No 161
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.22 E-value=1.3e+02 Score=24.94 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHh
Q psy14439 126 KSIDYIQFLVQQKKKLEEERN------------GLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~------------~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
+...-.+.|+.|..++.+|+. .|+++++.|+.+.+.+.+....
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666665554 3556666655555554444433
No 162
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=40.06 E-value=53 Score=23.16 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
+++++-|++++..|..++..|+.+..
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~ 38 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENN 38 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777764433
No 163
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=39.47 E-value=1.2e+02 Score=27.52 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 137 QKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 137 ~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
...++.+|+++|++|+..|+....
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888888888877744433
No 164
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=39.38 E-value=83 Score=23.48 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
..+..++++..++++|..+|+-|+..|.. -.+.+.+..
T Consensus 42 ~~l~~l~~~~~~l~~e~~~L~lE~~~l~~-~~rIe~iA~ 79 (97)
T PF04999_consen 42 YELQQLEKEIDQLQEENERLRLEIATLSS-PSRIERIAR 79 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHH
Confidence 33555556666666666666666555532 233444444
No 165
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=39.27 E-value=1.1e+02 Score=25.26 Aligned_cols=37 Identities=14% Similarity=0.313 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
...||+|| +.++++|.+.++.|...+..|-.....++
T Consensus 92 ~~eAie~l---~k~~~~l~~~~~~l~~~l~~l~~~~~~l~ 128 (145)
T COG1730 92 ADEAIEFL---KKRIEELEKAIEKLQQALAELAQRIEQLE 128 (145)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 44445555555555555544443333333
No 166
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=39.23 E-value=97 Score=23.38 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
.+..|+.+...+++++++|+..+..|
T Consensus 74 ~~~~l~~~~~~l~~~i~~l~~~~~~l 99 (103)
T cd01106 74 LLEALREQKELLEEKKERLDKLIKTI 99 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 167
>PLN03188 kinesin-12 family protein; Provisional
Probab=39.03 E-value=1.4e+02 Score=33.04 Aligned_cols=71 Identities=28% Similarity=0.355 Sum_probs=45.4
Q ss_pred hHHH-HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy14439 83 HTQA-EQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEE----ERNGLRKEVVALRI 157 (245)
Q Consensus 83 H~~~-ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~----e~~~L~~ei~~L~~ 157 (245)
|+.. +|.|| |.+||++.... ..||.+=..-..||+.|-.+...|.- |.+.|++|...|++
T Consensus 1123 ~~~ll~~hr~--i~egi~dvkka-------------aakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~ 1187 (1320)
T PLN03188 1123 HIQLLARHRR--IQEGIDDVKKA-------------AARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQA 1187 (1320)
T ss_pred HHHHHHHHHH--HHHHHHHHHHH-------------HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5543 55555 78888887654 34666666667788888888776653 45557777777766
Q ss_pred HHHHHHHHHHh
Q psy14439 158 MQANYDIMVKA 168 (245)
Q Consensus 158 ~~~~~e~~~~~ 168 (245)
.......-+.|
T Consensus 1188 qlrdtaeav~a 1198 (1320)
T PLN03188 1188 QLRDTAEAVQA 1198 (1320)
T ss_pred HHhhHHHHHHH
Confidence 55554444443
No 168
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.64 E-value=66 Score=29.95 Aligned_cols=38 Identities=29% Similarity=0.348 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
...+..||++.+.|++|+..||.|...|+....+|+..
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek 196 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK 196 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH
Confidence 34567899999999999999999999998766665543
No 169
>PF14282 FlxA: FlxA-like protein
Probab=38.57 E-value=1.3e+02 Score=23.32 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCC
Q psy14439 88 QKRRDAIKKGYDSLQDLVPTCHQ 110 (245)
Q Consensus 88 rkRR~~In~~f~~L~~lVP~~~~ 110 (245)
-.+=..|+..+..|..=|-.+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666677777777776666643
No 170
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=38.17 E-value=67 Score=22.57 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 134 LVQQKKKLEEERNGLRKEVVALRIMQAN 161 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~~L~~~~~~ 161 (245)
+.++...|+.+++..+++....+.....
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555544333
No 171
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=37.89 E-value=95 Score=27.90 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
++++.++..++..|+.||+.|+..
T Consensus 99 E~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 99 EEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 172
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=37.89 E-value=76 Score=23.95 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
++.|+++.+.++.++..++.++..++
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~ 97 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALE 97 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555554444444443
No 173
>KOG1318|consensus
Probab=37.62 E-value=59 Score=31.51 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 119 SKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 119 sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
+-...|++.-+-+..++.+.+.|+..++.|..+|++|+.+.......+...
T Consensus 280 dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~~ 330 (411)
T KOG1318|consen 280 DYIRELQQTLQRARELENRQKKLESTNQELALRIEELKSEAGRHGLQVEPS 330 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 334578888888999999999999999999999999998876554444333
No 174
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.59 E-value=1.4e+02 Score=22.95 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.|+.+.+.+++++..++.++..|+
T Consensus 98 ~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 98 TLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555554443
No 175
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.55 E-value=1.3e+02 Score=29.62 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKE 151 (245)
Q Consensus 139 ~~l~~e~~~L~~e 151 (245)
++|+++..+|+..
T Consensus 119 ~ql~~~~~~~~~~ 131 (472)
T TIGR03752 119 EQLKSERQQLQGL 131 (472)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 176
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=37.47 E-value=1.2e+02 Score=23.27 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
..-..++..|....++++.++..|.++|.+++
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445566666667777777777777776664
No 177
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.44 E-value=1.1e+02 Score=28.51 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHH--HHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 83 HTQAEQKRRDAI--KKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 83 H~~~ErkRR~~I--n~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
....||-|+..| -+.+++|..=+..+.. ..-.....+ +.....+++..++.|+++|+.|+..+.
T Consensus 40 yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~-------~ql~~~~~k-------~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 40 YQNAEQARQEAIEFADSLDELKEKLKEMSS-------TQLRANIAK-------AEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcCH-------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577666554 3455666655555321 122333344 444445555555555555555555555
Q ss_pred HHHHHHHh
Q psy14439 161 NYDIMVKA 168 (245)
Q Consensus 161 ~~e~~~~~ 168 (245)
+|+..+..
T Consensus 106 ~y~~~~~~ 113 (301)
T PF06120_consen 106 NYQQQLAE 113 (301)
T ss_pred HHHHHHhc
Confidence 56554433
No 178
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=37.40 E-value=1.6e+02 Score=24.23 Aligned_cols=71 Identities=25% Similarity=0.327 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCchHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 92 DAIKKGYDSLQDLVPTCHQTDSSGYKLSKAT-VLQ--KSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 92 ~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~-IL~--kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
+.|.+.+..|..=+-.... ++.. |++ .+-..|..|+.+...+..++.+|+.++..|+..+.++.+++..
T Consensus 20 dsle~~v~~LEreLe~~q~--------~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQE--------NKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred hhHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666655543321 1222 222 3456778888888888888888888888888888888877755
Q ss_pred cC
Q psy14439 169 QQ 170 (245)
Q Consensus 169 ~~ 170 (245)
.+
T Consensus 92 ~q 93 (140)
T PF10473_consen 92 KQ 93 (140)
T ss_pred HH
Confidence 44
No 179
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.40 E-value=84 Score=22.24 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+.-..++..|..++..|++++++++
T Consensus 35 qeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 35 QEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334445555555555555555543
No 180
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=37.17 E-value=1.4e+02 Score=22.57 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
..|+++....++++++.+.++..|+....
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k 32 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKK 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666654433
No 181
>PRK01203 prefoldin subunit alpha; Provisional
Probab=37.07 E-value=1.2e+02 Score=24.69 Aligned_cols=36 Identities=6% Similarity=0.119 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
+-+..|+++.+.|+++++.|+....++..++..++.
T Consensus 7 ~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 7 AQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555555666666666665555555544444443
No 182
>PF14645 Chibby: Chibby family
Probab=37.00 E-value=1.3e+02 Score=23.84 Aligned_cols=32 Identities=31% Similarity=0.276 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
...|++++++|++|.+.|+-+++-|-.|.+..
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDMLtet 104 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDMLTET 104 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35589999999999999999999887775543
No 183
>KOG4343|consensus
Probab=36.78 E-value=1.4e+02 Score=30.07 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQAN 161 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~ 161 (245)
--||+..|+...+++..|.+.|++|-.+|+-.+..
T Consensus 300 KKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~ 334 (655)
T KOG4343|consen 300 KKEYMLGLEARLQALLSENEQLKKENATLKRQLDE 334 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44888899999999999999998888888754433
No 184
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=36.69 E-value=1.4e+02 Score=23.37 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
-+.++.++++.++++.++..+.+++..|
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 86 EERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 185
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=36.48 E-value=1.4e+02 Score=30.03 Aligned_cols=40 Identities=38% Similarity=0.498 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQF----LVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~----Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
..|+.+|+.-++.+.+ |.+.+..|++++..|+.+++.|+.
T Consensus 135 ~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~ 178 (546)
T PF07888_consen 135 TTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEA 178 (546)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477788777666532 444445555555555555555443
No 186
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.45 E-value=1.4e+02 Score=26.84 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy14439 85 QAEQKRRDAIKKGYDSLQ 102 (245)
Q Consensus 85 ~~ErkRR~~In~~f~~L~ 102 (245)
.+=..-||+++.+..+|-
T Consensus 82 pIVtsQRDRFR~Rn~ELE 99 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELE 99 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555543
No 187
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.28 E-value=1.9e+02 Score=25.78 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=2.8
Q ss_pred chHHHHH
Q psy14439 118 LSKATVL 124 (245)
Q Consensus 118 ~sKa~IL 124 (245)
+.-+..|
T Consensus 49 ~~h~eeL 55 (230)
T PF10146_consen 49 MAHVEEL 55 (230)
T ss_pred HHHHHHH
Confidence 3334444
No 188
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=35.89 E-value=1.7e+02 Score=27.59 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVA 154 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~ 154 (245)
+|.-+++-+..|+.++..|+.+.++|+.++..
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~~ 162 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEANK 162 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666655555555555444443
No 189
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=35.56 E-value=1.2e+02 Score=23.58 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q psy14439 141 LEEERNGLRKEV 152 (245)
Q Consensus 141 l~~e~~~L~~ei 152 (245)
.++++++|++.|
T Consensus 88 ~~k~i~~le~~I 99 (100)
T PF04568_consen 88 HRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 344444444433
No 190
>KOG2070|consensus
Probab=35.41 E-value=1.2e+02 Score=30.43 Aligned_cols=43 Identities=9% Similarity=0.232 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
-+|-+-.|+.++.+|+.+..++++.+++-+..+..+|++++.+
T Consensus 614 lvdtvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~ 656 (661)
T KOG2070|consen 614 LVDTVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKM 656 (661)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788899999999999999999998888888899888765
No 191
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=35.39 E-value=1.8e+02 Score=25.11 Aligned_cols=40 Identities=28% Similarity=0.339 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 122 TVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQAN 161 (245)
Q Consensus 122 ~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~ 161 (245)
-||..-...|+.|+.++..++.+++.|+.|...|+..+..
T Consensus 5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~R 44 (194)
T PF15619_consen 5 RVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKR 44 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777889999999999999999999999999877544
No 192
>PRK06835 DNA replication protein DnaC; Validated
Probab=35.04 E-value=1.7e+02 Score=27.26 Aligned_cols=68 Identities=13% Similarity=0.233 Sum_probs=36.3
Q ss_pred HHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy14439 97 GYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQ 175 (245)
Q Consensus 97 ~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~ 175 (245)
+..++-.-+|.+..- ...|-..++++.+.+-.....-++.++.|++++..|+.. -..++.+++.|..+
T Consensus 27 r~~e~~~~~P~~~~i--------d~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~---~~~lL~~~g~~~dy 94 (329)
T PRK06835 27 RKEEVYKKIPEIAEI--------DDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVK---KAELLVSNGYPPDY 94 (329)
T ss_pred HHHHHHHhCccHHHH--------HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH---HHHHHHHcCCChhh
Confidence 345556667775421 133344455555555432222255666677777777533 34567778877543
No 193
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=34.96 E-value=1.9e+02 Score=21.58 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNG 147 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~ 147 (245)
..|-...-.+|..|.++.+.|-.+++.
T Consensus 42 ~~I~~~f~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 42 AQIKAAFDELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344445555555555555444443
No 194
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=34.91 E-value=1.1e+02 Score=21.19 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
..+|.|-.+.++..++...+...++.|+.++..+|
T Consensus 17 a~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE 51 (53)
T PF08898_consen 17 AQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLE 51 (53)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHh
Confidence 45677777777777777778888888877776655
No 195
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.90 E-value=82 Score=26.59 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 136 QQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~ 156 (245)
++.+++++|++..+.++++|+
T Consensus 161 ~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 196
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=34.89 E-value=1.5e+02 Score=22.19 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVA 154 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~ 154 (245)
|.+-+..+.+++.++..|+.+..+
T Consensus 10 ieK~k~Kiae~Q~rlK~Le~qk~E 33 (83)
T PF14193_consen 10 IEKTKEKIAELQARLKELEAQKTE 33 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333
No 197
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.85 E-value=1.6e+02 Score=23.06 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
..|+...++++.+++.|.+++..|+..+..|+.....-
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l 39 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETL 39 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888888888877777776655443
No 198
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=34.84 E-value=41 Score=33.32 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14439 137 QKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 137 ~~~~l~~e~~~L~~ei~~L~ 156 (245)
++++|++|+++|++++++|+
T Consensus 32 kie~L~kql~~Lk~q~~~l~ 51 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLN 51 (489)
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 44444444444444444443
No 199
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.73 E-value=1.6e+02 Score=23.19 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
-|..|..+...|+..+..|-+|..+|+++...+...+..
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666666666665555555543
No 200
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=34.70 E-value=1.8e+02 Score=23.75 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGL 148 (245)
Q Consensus 135 q~~~~~l~~e~~~L 148 (245)
.++..+++.++..|
T Consensus 27 e~~~~~~E~EI~sL 40 (143)
T PF12718_consen 27 EQENEQKEQEITSL 40 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 201
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.67 E-value=1.6e+02 Score=29.09 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=14.0
Q ss_pred HHHhHHHHHH-HHHHHHHHHHHHh
Q psy14439 80 REAHTQAEQK-RRDAIKKGYDSLQ 102 (245)
Q Consensus 80 R~~H~~~Erk-RR~~In~~f~~L~ 102 (245)
-..+...|+. +...+...|+.|+
T Consensus 66 VnqSALteqQ~kasELEKqLaaLr 89 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555665 6666777777664
No 202
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=34.62 E-value=1.4e+02 Score=21.32 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=18.4
Q ss_pred hHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 119 SKATVLQKSID--YIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 119 sKa~IL~kAi~--YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
.-..|.+.+.. -+..|.+.+.-|++|+++|+.|...-
T Consensus 13 ~~~~i~~d~LsllsV~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 13 FGHEIGNDALSLLSVAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred cccccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555432 23455555555555555555554433
No 203
>PRK00295 hypothetical protein; Provisional
Probab=34.34 E-value=1.6e+02 Score=20.98 Aligned_cols=26 Identities=23% Similarity=0.129 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|..|-+.+.+++.++..|++++..|.
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L~ 46 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAALI 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666664
No 204
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=34.07 E-value=1.2e+02 Score=18.81 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14439 140 KLEEERNGLRKEVVALR 156 (245)
Q Consensus 140 ~l~~e~~~L~~ei~~L~ 156 (245)
+|..+.++|++.-+.|+
T Consensus 5 kL~sekeqLrrr~eqLK 21 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLK 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 205
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.00 E-value=1.1e+02 Score=27.11 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 143 EERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 143 ~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.++.+.+.||+.++..+..++..+
T Consensus 169 ~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 169 RELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555544444443
No 206
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=33.86 E-value=47 Score=32.50 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVA 154 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~ 154 (245)
.+-|+.|+.+.+.|+.++.+||.++.+
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677777777777777777666544
No 207
>KOG3540|consensus
Probab=33.69 E-value=5e+02 Score=26.03 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=36.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 81 EAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVA 154 (245)
Q Consensus 81 ~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~ 154 (245)
.+.-..|-|+|.+|+.-+.+-..+=-.. .+.|..|.++. +..|..++.|++|...-|+++.+
T Consensus 253 kAkmrleekhr~rmd~VmkEW~~ae~qa-----KnPKAekqaln-------qhFQ~~v~sLEee~a~erqqlve 314 (615)
T KOG3540|consen 253 KAKMRLEEKHRKRMDKVMKEWEEAETQA-----KNPKAEKQALN-------QHFQKTVSSLEEEAARERQQLVE 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCchhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888777665543321 23466665544 45555566666666555555544
No 208
>PRK14011 prefoldin subunit alpha; Provisional
Probab=33.68 E-value=1.8e+02 Score=23.93 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
|+.=+.|+..++++.+.|..++..|+.-+.++...+..++
T Consensus 5 lq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~ 44 (144)
T PRK14011 5 LQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESME 44 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566667777777777776666666666655555544
No 209
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=33.67 E-value=1.4e+02 Score=29.96 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhccCCCCCC
Q psy14439 82 AHTQAEQKRRDAIKKGYDSLQDLVPTCHQ 110 (245)
Q Consensus 82 ~H~~~ErkRR~~In~~f~~L~~lVP~~~~ 110 (245)
..+.+|..=+..|..+...|..|.|-|.+
T Consensus 221 ~RdlaEeNl~kEi~~~~~~l~~l~~lc~~ 249 (538)
T PF05781_consen 221 SRDLAEENLKKEIENCLKLLESLAPLCWE 249 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 35677777778888999999999999864
No 210
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.56 E-value=1.7e+02 Score=22.49 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
..-++.|+++...+...+..|+..+.+++..+..++.+.
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666667777666666666655555554
No 211
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=33.45 E-value=1.8e+02 Score=20.84 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
..=|.+...|+.++..|.++...++.|-..|
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L 40 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWREERAQL 40 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777666665554
No 212
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=33.27 E-value=1.5e+02 Score=27.93 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPL 173 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~ 173 (245)
+++.|+.++++++.++..|..+.+.++..+..++..+...+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (389)
T PRK03992 9 RNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPP 52 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 33344445555555555555555555554445555555444444
No 213
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=33.20 E-value=59 Score=18.67 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy14439 144 ERNGLRKEVVALRIM 158 (245)
Q Consensus 144 e~~~L~~ei~~L~~~ 158 (245)
|+++|+..|..|+..
T Consensus 2 E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 2 EMNRLRNRISDLERQ 16 (23)
T ss_pred hHHHHHHHHHHHHHH
Confidence 456666666666533
No 214
>PF14071 YlbD_coat: Putative coat protein
Probab=32.96 E-value=2e+02 Score=23.35 Aligned_cols=51 Identities=8% Similarity=0.081 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q psy14439 118 LSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTE 177 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~v~ 177 (245)
-.|...|.+.+.|++.| .+++|..-+..+..++.+.+.++.+-+.+.....
T Consensus 61 ~~~~d~~~ql~~~vKkm---------D~nq~q~hl~~~sqai~~vQ~~l~qFq~~~~~~~ 111 (124)
T PF14071_consen 61 EKKNDWMSQLLSMVKKM---------DVNQMQKHLNNVSQAIGSVQQVLSQFQGNGQKQS 111 (124)
T ss_pred cchhHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 45788888999999987 5667777777777777888888877766554443
No 215
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=32.95 E-value=1.1e+02 Score=27.90 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~ 156 (245)
++.++++++++..|+.||+.|.
T Consensus 199 re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 199 REEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 216
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=32.87 E-value=1.7e+02 Score=24.29 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
+.=+.-++.|+.+.+.++.++..|+..+.+++..+..++.+-...
T Consensus 9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~ 53 (145)
T COG1730 9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAG 53 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444555666666666666666666666666655555554444
No 217
>PRK04325 hypothetical protein; Provisional
Probab=32.80 E-value=1.4e+02 Score=21.75 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
..|-+.+.+++.++.+|++++..|
T Consensus 26 e~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 26 DGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666665555
No 218
>KOG3863|consensus
Probab=32.77 E-value=80 Score=32.10 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
=|..|+.++.+|..|..++...+..++..
T Consensus 519 ev~~l~~eKeqLl~Er~~~d~~L~~~kqq 547 (604)
T KOG3863|consen 519 EVEKLQKEKEQLLRERDELDSTLGVMKQQ 547 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444544444444444444444333
No 219
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=32.75 E-value=2.3e+02 Score=21.78 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 85 QAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 85 ~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
..|...++ ...-+++|..+-|...-- .-+..+-|.+.--+-+..|....+.++..+..|.++++.|+....+.+.
T Consensus 28 ~le~~~~E-~~~v~~eL~~l~~d~~vy----k~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 28 QVEAQLKE-AEKALEELERLPDDTPVY----KSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHH-HHHHHHHHHcCCCcchhH----HHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333 455677887777653100 0011233333333444555555555566666666666655555544444
Q ss_pred HH
Q psy14439 165 MV 166 (245)
Q Consensus 165 ~~ 166 (245)
.+
T Consensus 103 ~l 104 (110)
T TIGR02338 103 KI 104 (110)
T ss_pred HH
Confidence 44
No 220
>PLN02705 beta-amylase
Probab=32.74 E-value=2.9e+02 Score=28.44 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=16.8
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHh
Q psy14439 77 ERRREAHTQAEQKRRDAIKKGYDSLQ 102 (245)
Q Consensus 77 ~~rR~~H~~~ErkRR~~In~~f~~L~ 102 (245)
+.-|++....||+||..-..-|.-|+
T Consensus 82 ~~e~e~~~~rer~rrai~~ki~aglr 107 (681)
T PLN02705 82 EKEKERTKLRERHRRAITSRMLAGLR 107 (681)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44567777889999964444444444
No 221
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.46 E-value=2.1e+02 Score=21.16 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 83 HTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 83 H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+...+.++=.....-+..|-.=.+....-...=.+.++..++..=-+.+..+..+...++.++..+..++.+++..
T Consensus 23 ~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 23 QLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555656655544332111000012457888888888999999999999999999999999988754
No 222
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=32.28 E-value=1.5e+02 Score=26.49 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
..-..++.|+.+..+|+.++..|+++++..+.....+..
T Consensus 15 ~~~~e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~ 53 (236)
T PF12017_consen 15 TLKIENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLKQ 53 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888888888888888888877665544444433
No 223
>PF14992 TMCO5: TMCO5 family
Probab=32.20 E-value=1.6e+02 Score=27.14 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERN 146 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~ 146 (245)
+...++.||+.|++...+++++++
T Consensus 145 l~eDq~~~i~klkE~L~rmE~ekE 168 (280)
T PF14992_consen 145 LCEDQANEIKKLKEKLRRMEEEKE 168 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887776666444
No 224
>KOG0992|consensus
Probab=32.20 E-value=2.1e+02 Score=28.75 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=11.3
Q ss_pred CCCCccccCCCCCCccc
Q psy14439 34 NSMVSYSRSNSNGSFQS 50 (245)
Q Consensus 34 ~~~~~~Sr~sS~~s~~~ 50 (245)
+.....||++|.|+..+
T Consensus 434 pqq~s~sRSsSs~s~~t 450 (613)
T KOG0992|consen 434 PQQLSLSRSSSSGSQET 450 (613)
T ss_pred hhhhhhcccccccchhh
Confidence 34556688888887654
No 225
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=32.20 E-value=89 Score=23.18 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~ 158 (245)
.++.+|..+|++|++.|++.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~E 22 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAE 22 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888866533
No 226
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=32.00 E-value=1.9e+02 Score=24.96 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+.+.+.|++++++|+.++++|-
T Consensus 46 erQ~~~LR~~~~~L~~~l~~Li 67 (225)
T PF04340_consen 46 ERQLERLRERNRQLEEQLEELI 67 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777773
No 227
>PRK04406 hypothetical protein; Provisional
Probab=31.88 E-value=2e+02 Score=20.97 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
.|-+.+.+++.++..|++++..|
T Consensus 29 ~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 29 ELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555554444
No 228
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=31.85 E-value=1.1e+02 Score=22.76 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
..|+...++|+++..++..++..+.
T Consensus 3 ~~l~~~~~~L~~~~~~l~~~i~~~~ 27 (83)
T PF07061_consen 3 ESLEAEIQELKEQIEQLEKEISELE 27 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555553
No 229
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=31.85 E-value=1.7e+02 Score=27.01 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
..+-++.|+++..++.+++..|+.+.+.|+..
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555665555555555443
No 230
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=31.79 E-value=94 Score=26.65 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+||..-++.++++++++..|++++++.+
T Consensus 146 ~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 146 ELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666777777777777777664
No 231
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=31.78 E-value=2.6e+02 Score=22.65 Aligned_cols=40 Identities=8% Similarity=0.152 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
..+-.+..+.++.++++.+.+.+.+++.+..+...++.-+
T Consensus 80 ~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 80 QKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666666666666555444
No 232
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=31.74 E-value=1.8e+02 Score=22.68 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
..|.++.+.++++++.|+.-++.|+..+..|+
T Consensus 83 ~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~ 114 (118)
T cd04776 83 EKIEKRRAELEQQRRDIDAALAELDAAEERCR 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554444444
No 233
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.74 E-value=1.8e+02 Score=26.56 Aligned_cols=7 Identities=43% Similarity=0.719 Sum_probs=2.9
Q ss_pred CChHHHH
Q psy14439 206 SNFSELS 212 (245)
Q Consensus 206 ~s~~~l~ 212 (245)
.||.||+
T Consensus 127 kSfsD~I 133 (265)
T COG3883 127 KSFSDLI 133 (265)
T ss_pred CcHHHHH
Confidence 3444443
No 234
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=31.55 E-value=52 Score=30.23 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 134 LVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
=+++.+.|++-|.+|++||+.|+.
T Consensus 8 DEqKtR~LEesI~RLEkEIe~LE~ 31 (278)
T PF03285_consen 8 DEQKTRSLEESIHRLEKEIEALEN 31 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356677788999999999999863
No 235
>PRK11677 hypothetical protein; Provisional
Probab=31.47 E-value=1.6e+02 Score=24.13 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVA--------LRIMQANYDIM 165 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~--------L~~~~~~~e~~ 165 (245)
-.+.|+++.++.+.++++-++||.. |+.+..+|+.+
T Consensus 30 ~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~L 73 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQL 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777765 55555555544
No 236
>KOG4657|consensus
Probab=31.39 E-value=1.1e+02 Score=27.42 Aligned_cols=36 Identities=11% Similarity=-0.022 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
....+-|+.+|++.+.|..-++-|+.|...++..++
T Consensus 89 ~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs 124 (246)
T KOG4657|consen 89 MGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIIS 124 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334455555555555555555555555555544443
No 237
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=31.38 E-value=1.8e+02 Score=25.50 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQFLVQQKKKLEEERN-GLRKEVVALRI 157 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~-~L~~ei~~L~~ 157 (245)
+.|+.-|+.|..-++.--+++.+++.++. +|++|++.|+.
T Consensus 2 vekv~~LQ~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~ 42 (205)
T PF12240_consen 2 VEKVERLQQALAQLQAACEKREQLERRLRTRLERELESLRA 42 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777777777777777665 68888888863
No 238
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.38 E-value=1.4e+02 Score=26.14 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
..+.+...+|+++.++|+++++.++.....++..+..
T Consensus 128 ~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 128 AQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777666555555433
No 239
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=31.27 E-value=1.5e+02 Score=28.41 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
....+..|+.++..+..+...+++|++.++.....+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466778888888888888888888888877765553
No 240
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.25 E-value=84 Score=26.54 Aligned_cols=19 Identities=42% Similarity=0.503 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14439 137 QKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 137 ~~~~l~~e~~~L~~ei~~L 155 (245)
+.+.+++|++.|++|++..
T Consensus 155 ~~~~~~~ei~~lk~el~~~ 173 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKK 173 (192)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 3344444555555554443
No 241
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=31.02 E-value=2.2e+02 Score=21.10 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
||..|+.+..++.+-...|+.+...+
T Consensus 27 lv~sLR~KLiKYt~LnkkLq~~~~~~ 52 (76)
T PF11544_consen 27 LVGSLRGKLIKYTELNKKLQDQLLNL 52 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444
No 242
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=30.99 E-value=1.8e+02 Score=27.51 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
.|++++++|+.+..++..+++.+
T Consensus 148 ~L~~enerL~~e~~~~~~qlE~~ 170 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLEKF 170 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 243
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.96 E-value=2.2e+02 Score=26.32 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=9.2
Q ss_pred HHHHHHHHHhccCCCC
Q psy14439 93 AIKKGYDSLQDLVPTC 108 (245)
Q Consensus 93 ~In~~f~~L~~lVP~~ 108 (245)
.|......|..++|.+
T Consensus 167 ~L~~~~~~l~~~~~~l 182 (325)
T PF08317_consen 167 KLDKQLEQLDELLPKL 182 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555666666654
No 244
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=30.84 E-value=2.2e+02 Score=21.08 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
+..+..+..+++.+..+|+.|...|+.+++.+.
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555566666666666666666665554443
No 245
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=30.82 E-value=1.7e+02 Score=22.30 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
--.-|..|+.++..+.+++++|+.+++.-+..+.
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888888876655443
No 246
>KOG0995|consensus
Probab=30.67 E-value=1.6e+02 Score=29.68 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCCCccc
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRK-------EVVALRIMQANYDIMVKAQQTPLGQTE 177 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~-------ei~~L~~~~~~~e~~~~~~~~~~~~v~ 177 (245)
.|...|+..+....+.+...+++|+. |++.|+.+...+..++.-++..+..|+
T Consensus 276 nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve 335 (581)
T KOG0995|consen 276 NKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVE 335 (581)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 45667888887777766666555544 444555566666666666766665544
No 247
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.67 E-value=1.1e+02 Score=22.54 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 92 DAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEV 152 (245)
Q Consensus 92 ~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei 152 (245)
..|+.+|...+.+|-.+... ..+ +..--++|+.|++++....+-+..++..+
T Consensus 31 ~~lk~Klq~ar~~i~~lpgi-----~~s----~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 31 GSLKHKLQKARAAIRELPGI-----DRS----VEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHhCCCc-----cCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44666666666666554321 111 22233566666666666666666665544
No 248
>PRK00736 hypothetical protein; Provisional
Probab=30.62 E-value=1.8e+02 Score=20.73 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|..|-..+.+++.++..|++++..|.
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666777777777766664
No 249
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=30.55 E-value=4.7e+02 Score=25.70 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=12.5
Q ss_pred CCChHHHHHhHHH----HhhhcC
Q psy14439 205 VSNFSELSACVFS----WLEEYC 223 (245)
Q Consensus 205 ~~s~~~l~~~~~~----W~~~~c 223 (245)
.+.++||.++|.+ |..|.-
T Consensus 290 ~s~LEelRrevssLtarw~qEeg 312 (558)
T PF15358_consen 290 SSGLEELRREVSSLTARWHQEEG 312 (558)
T ss_pred CccHHHHHHHHHHHhhHHHHHHh
Confidence 4556788887765 666543
No 250
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=30.53 E-value=2.4e+02 Score=22.44 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
..-|+.-...++.|+++...+..++..|+..+.+++..+..++.+-
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3446667777888999999999999999999999988876666554
No 251
>KOG4370|consensus
Probab=30.51 E-value=1.2e+02 Score=29.73 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPL 173 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~ 173 (245)
+..||.++++|++..+.|++.|.+++..+-++.+++..++...
T Consensus 415 le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~ 457 (514)
T KOG4370|consen 415 LELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEEN 457 (514)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567888889999999999999988888888888777766544
No 252
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.38 E-value=98 Score=22.03 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 138 KKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 138 ~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+.++.+.+.-|+.||+.|+..
T Consensus 27 V~El~eRIalLq~EIeRlkAe 47 (65)
T COG5509 27 VAELEERIALLQAEIERLKAE 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777766544
No 253
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=30.27 E-value=4.1e+02 Score=23.96 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
+..++.++.+|.+++.+|+.++++++.....++
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544443333
No 254
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=30.12 E-value=1.5e+02 Score=22.61 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
++...-..---..|+.|+...+.++.++..++.++..+....+...
T Consensus 73 ~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 73 MSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666667778888899999999999999999988876665543
No 255
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=30.10 E-value=1.5e+02 Score=19.90 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
..|..+++.|+.++..|+..-+.|.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777776665544443
No 256
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.82 E-value=2.7e+02 Score=21.73 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
.-|..|..+..+|+..+..|-+|-.+|+++...+...+...
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666667777766666666543
No 257
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=29.81 E-value=1.5e+02 Score=22.50 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
..++++.+.|++++++|+..+..++.+
T Consensus 74 ~~l~~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04775 74 AILEERLQSLNREIQRLRQQQQVLAAI 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666665555544444
No 258
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.72 E-value=1.4e+02 Score=24.67 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
+++..+-....+ |..|+.+...++.++..|+.|+..|
T Consensus 69 ~s~eel~~ld~e-i~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 69 PSPEELAELDAE-IKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred CCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 6666666666666666555555444
No 259
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.66 E-value=1.8e+02 Score=23.28 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVA 154 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~ 154 (245)
...|+++.++.++++++.+++|..
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655
No 260
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.54 E-value=2.6e+02 Score=21.45 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
.++..++..--+-|..+....+.++++...|++++.+++.
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666688888888888888888887763
No 261
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=29.47 E-value=2.7e+02 Score=21.62 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+.-|..--.||..|...+..++..+..++.+++..+..
T Consensus 60 ~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~ 97 (141)
T TIGR02473 60 ALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRER 97 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888999999999999999998888888876543
No 262
>PF14802 TMEM192: TMEM192 family
Probab=29.39 E-value=86 Score=28.02 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQFLVQQKKKLEEERNGL 148 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L 148 (245)
.+-..+|+|=.|-|++|++++..|++++..|
T Consensus 205 ~~~eellEkQadlI~yLk~hn~~L~~ril~l 235 (236)
T PF14802_consen 205 SSLEELLEKQADLIRYLKEHNARLSRRILAL 235 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457899999999999999999999988765
No 263
>PRK09039 hypothetical protein; Validated
Probab=29.19 E-value=4.8e+02 Score=24.39 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
+-.-|..|++++..|+.++..|+.++++++.
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555444433
No 264
>PLN02678 seryl-tRNA synthetase
Probab=28.77 E-value=3.6e+02 Score=26.39 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 134 LVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
|..+.+++.+++..|+.++..++..
T Consensus 76 l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 76 LIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555444433
No 265
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=28.76 E-value=38 Score=28.72 Aligned_cols=46 Identities=26% Similarity=0.176 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+.+.....+|+..|..+++++..++.+|.+|...|+....+..+.+
T Consensus 7 aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~l 52 (181)
T PF09311_consen 7 AQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKL 52 (181)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677899999999999999999999999999987776666665
No 266
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.75 E-value=1.2e+02 Score=24.97 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCC
Q psy14439 85 QAEQKRRDAIKKGYDSLQDLVP 106 (245)
Q Consensus 85 ~~ErkRR~~In~~f~~L~~lVP 106 (245)
..++.|=..+++-|+.|+.-|+
T Consensus 10 ~~~qNRPys~~di~~nL~~~~~ 31 (169)
T PF07106_consen 10 MKEQNRPYSAQDIFDNLHNKVG 31 (169)
T ss_pred HHHcCCCCcHHHHHHHHHhhcc
Confidence 3345555566666666666554
No 267
>KOG4460|consensus
Probab=28.71 E-value=3.3e+02 Score=27.74 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
.+|+.|+.+++++.++++.+++|++.++.+...++
T Consensus 588 rH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La 622 (741)
T KOG4460|consen 588 RHVKLLCDQKKKQLQDLSYCREERKSLREMAERLA 622 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777888777776654433
No 268
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.68 E-value=1.3e+02 Score=27.51 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
-++.|+++++.|+.++++|++.-+.++.
T Consensus 5 ~L~eL~qrk~~Lq~eIe~LerR~~ri~~ 32 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIEQLERRRERIEK 32 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777666665544
No 269
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=28.50 E-value=2.9e+02 Score=21.59 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 143 EERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 143 ~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
++++.+++++..|+.....++..+
T Consensus 84 ~~~~~l~~~i~~L~~~~~~l~~~~ 107 (126)
T cd04783 84 QKLAEVDEKIADLQRMRASLQELV 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 270
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.50 E-value=1.3e+02 Score=20.89 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
|..|+.+...++..+..++.|++.|+......++.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666665555544443
No 271
>PRK11239 hypothetical protein; Provisional
Probab=28.48 E-value=1.1e+02 Score=27.19 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
..|.+++..|+.|+..|+.+++.|
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l 209 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSL 209 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555
No 272
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=28.46 E-value=2.5e+02 Score=21.27 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+.+|..+++.|..++.++..++..++..
T Consensus 26 vdqLss~V~~L~~kvdql~~dv~~a~aa 53 (85)
T PRK09973 26 VNQLASNVQTLNAKIARLEQDMKALRPQ 53 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666544
No 273
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=28.44 E-value=84 Score=29.46 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
.++.+++.+||+++.+|+..+.
T Consensus 292 De~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 292 DEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666654433
No 274
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=28.34 E-value=1.9e+02 Score=27.60 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=38.8
Q ss_pred HHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q psy14439 96 KGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEE----------ERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 96 ~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~----------e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
+-|..|-...|.-..- --..++=..-|...-+-|..|+.+.+++++ ++..++++++.++..+..++++
T Consensus 218 ~Yf~~l~~~f~d~a~~--~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 218 EYFENLYDAFGDKAKF--FLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHCCCCEEE--EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEE--EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777652100 001122233344444444445555555444 3556677777777777777777
Q ss_pred HHhcCC
Q psy14439 166 VKAQQT 171 (245)
Q Consensus 166 ~~~~~~ 171 (245)
+...+.
T Consensus 296 ~~~~~~ 301 (406)
T PF02388_consen 296 IAEYGD 301 (406)
T ss_dssp HHHH-S
T ss_pred HHhcCC
Confidence 666554
No 275
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.25 E-value=2.7e+02 Score=25.39 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=37.6
Q ss_pred HHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 99 DSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 99 ~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
+.|..+|..... ..++.|-.++.+-+||+..|+.++...-.++...++.....
T Consensus 91 e~l~~~~a~~~k----~~r~~ke~~~Kk~~e~~~~lq~El~~~~~EL~KaKK~Y~~~ 143 (260)
T cd07677 91 ENYKNLISEPAR----TVRLYKEQQLKRCVDQLTKIQAELQETVKDLAKGKKKYFET 143 (260)
T ss_pred HHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 455555654321 23577889999999999999999988877777665544433
No 276
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=28.24 E-value=2.1e+02 Score=20.32 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=8.7
Q ss_pred cchhhHHhHHhhHHH
Q psy14439 182 DEVKFQVFQSIMDEL 196 (245)
Q Consensus 182 ~~~kf~if~~i~~~l 196 (245)
+|.| |++..|+.-+
T Consensus 48 ~n~k-W~~r~iiGai 61 (71)
T PF10779_consen 48 SNTK-WIWRTIIGAI 61 (71)
T ss_pred HHHH-HHHHHHHHHH
Confidence 3443 8877776655
No 277
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=28.12 E-value=2.7e+02 Score=24.49 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+-+..|+.+++++.++++..++++++++..
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 278
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.00 E-value=3e+02 Score=21.68 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=27.9
Q ss_pred HHHHHHHHhccCCCCC--CCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 94 IKKGYDSLQDLVPTCH--QTDS-SGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 94 In~~f~~L~~lVP~~~--~~~~-~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
....+++|..|-+... ..-. -=.+.+|..+...--+-|.++..+.+.++.+...|++.+.+++
T Consensus 40 ~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 40 INKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777766531 0000 0012334444333333333333555555555555555555443
No 279
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=27.99 E-value=1.9e+02 Score=19.27 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 122 TVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVA 154 (245)
Q Consensus 122 ~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~ 154 (245)
.-|.....-++.|++..+++-.|+..||.-|++
T Consensus 8 ~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~e 40 (45)
T PF11598_consen 8 KQLSELNQMLQELKELLRQQIKETRFLRNTIME 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777888888888888776653
No 280
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=27.87 E-value=1.5e+02 Score=25.80 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
-++.|+.++..|..+...+++|...|-+.+..++.--...
T Consensus 75 ~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 75 LAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4445556666666666666666666655555555444333
No 281
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=27.75 E-value=65 Score=24.98 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEV 152 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei 152 (245)
.+..|..|+++...++.|+..++.+|
T Consensus 76 c~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 76 CVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 45788999999999998888877653
No 282
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=27.62 E-value=2.1e+02 Score=27.18 Aligned_cols=53 Identities=21% Similarity=0.185 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPL 173 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~ 173 (245)
...=.+--++|..+..=+.+|+..+..+..||+.|...+..++..+.+...|.
T Consensus 42 ~~~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl 94 (384)
T PF03148_consen 42 YDSNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPL 94 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 33334455788888888888888888889999999888888888887777663
No 283
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.57 E-value=2.5e+02 Score=27.08 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
++.|++...++.++++.|+.++..|+
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 284
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=27.53 E-value=1.5e+02 Score=19.84 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=2.4
Q ss_pred HHHHHHHHHHH
Q psy14439 122 TVLQKSIDYIQ 132 (245)
Q Consensus 122 ~IL~kAi~YI~ 132 (245)
.||+.+.++|.
T Consensus 8 elLqe~~d~IE 18 (46)
T PF08946_consen 8 ELLQEHYDNIE 18 (46)
T ss_dssp -------THHH
T ss_pred HHHHHHHHhHH
Confidence 46666666664
No 285
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=27.42 E-value=2.7e+02 Score=20.87 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNG 147 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~ 147 (245)
++||-+-|..+|...+.|+.+...
T Consensus 10 ieK~k~Kiae~Q~rlK~Le~qk~E 33 (83)
T PF14193_consen 10 IEKTKEKIAELQARLKELEAQKTE 33 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544433
No 286
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=27.34 E-value=3.3e+02 Score=23.10 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14439 149 RKEVVALRIMQANYDIMV 166 (245)
Q Consensus 149 ~~ei~~L~~~~~~~e~~~ 166 (245)
|+|++++...+..+++.+
T Consensus 124 r~e~ee~~~~l~~le~~~ 141 (175)
T PRK13182 124 RREMEEMLERLQKLEARL 141 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555544444444444
No 287
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.28 E-value=2.1e+02 Score=20.63 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|..|-+.+.+++.++.+|++++..|.
T Consensus 24 Ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 49 (72)
T PRK02793 24 IEELNVTVTAHEMEMAKLRDHLRLLT 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666655553
No 288
>PRK02119 hypothetical protein; Provisional
Probab=27.27 E-value=2.1e+02 Score=20.74 Aligned_cols=26 Identities=8% Similarity=-0.010 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|..|-..+.+++.++..|++++..|.
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~ 50 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMA 50 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666553
No 289
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=27.17 E-value=2.7e+02 Score=27.49 Aligned_cols=62 Identities=26% Similarity=0.289 Sum_probs=40.3
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 94 IKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEE----ERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 94 In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~----e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
|.+||++.... ..||.+=..-..||+.|-.+...|.. |...|++|...|++.......-+.+
T Consensus 363 i~egI~dVKka-------------AakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqA 428 (488)
T PF06548_consen 363 IMEGIEDVKKA-------------AAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQA 428 (488)
T ss_pred HHHHHHHHHHH-------------HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH
Confidence 56666665543 34565555557888988888777664 4556788888887666555554444
No 290
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=27.13 E-value=1.5e+02 Score=25.88 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
-|+....-|+.|++.+++|+++.++|+...-.|--
T Consensus 49 rlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDd 83 (195)
T PF10226_consen 49 RLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDD 83 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 46667778888888888888888888887766643
No 291
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=27.01 E-value=21 Score=31.76 Aligned_cols=42 Identities=24% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
-++|..=.--|..|++-+.-|.++.++|++|++.|+..++.+
T Consensus 121 KT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 121 KTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456776667788899989999999999999999988776655
No 292
>PRK02119 hypothetical protein; Provisional
Probab=26.91 E-value=2.5e+02 Score=20.33 Aligned_cols=30 Identities=7% Similarity=-0.012 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 138 KKKLEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 138 ~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
+..|.+.+.+..++|+.|+.....+...+.
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555544444433333
No 293
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=26.58 E-value=2.3e+02 Score=24.13 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
++|..|+++++.|+.++..|+++....+.
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~e 139 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEE 139 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888877765543
No 294
>PRK09039 hypothetical protein; Validated
Probab=26.57 E-value=2.5e+02 Score=26.26 Aligned_cols=7 Identities=0% Similarity=-0.064 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy14439 93 AIKKGYD 99 (245)
Q Consensus 93 ~In~~f~ 99 (245)
.+...+.
T Consensus 99 ~Le~~~~ 105 (343)
T PRK09039 99 RLQALLA 105 (343)
T ss_pred HHHHHHh
Confidence 3344333
No 295
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=26.52 E-value=2.5e+02 Score=23.39 Aligned_cols=41 Identities=29% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERN---------------GLRKEVVALRIMQANYD 163 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~---------------~L~~ei~~L~~~~~~~e 163 (245)
-++..|.-|-.||++..+|+-++. -|+.||+.|....+.|-
T Consensus 19 eV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yC 74 (170)
T COG4396 19 EVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYC 74 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 356788889999999998885544 46666666655444443
No 296
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.16 E-value=3.9e+02 Score=24.17 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.+.+.|..|+++-..+..+++.|+.+|.+-+
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~ 207 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQE 207 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888889999999999998888887654
No 297
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=26.05 E-value=1.7e+02 Score=23.21 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy14439 122 TVLQKSIDYIQFLVQQKKKLEEERNGL--RKEVVALR 156 (245)
Q Consensus 122 ~IL~kAi~YI~~Lq~~~~~l~~e~~~L--~~ei~~L~ 156 (245)
.-+++.++--+.+..++++|..++++| ++++..|+
T Consensus 42 ~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Le 78 (109)
T PF11690_consen 42 DFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALE 78 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456777788889999999999999999 88887774
No 298
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=25.63 E-value=3.2e+02 Score=21.65 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|.+...+.++++.|+++|..|+
T Consensus 82 ~~~~~~l~~rvd~Lerqv~~Le 103 (108)
T COG3937 82 QSEMDELTERVDALERQVADLE 103 (108)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777765
No 299
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=25.62 E-value=1.4e+02 Score=22.06 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 136 QQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
++..++.++.+.|.+++..|+..+-.+|..--.
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888777765544
No 300
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=25.53 E-value=1.7e+02 Score=21.49 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
+++-+.+.+.+.+++.++++|+.....++
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555566666666666655544443
No 301
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=25.37 E-value=1.8e+02 Score=25.08 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 134 LVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
+.+++..|.+-+..++++++.|+....+|+
T Consensus 53 i~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 53 ISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555544444
No 302
>KOG0982|consensus
Probab=25.34 E-value=6.1e+02 Score=25.04 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=31.3
Q ss_pred hHHHhhhhcC-CCCCChHHHHHhHHHHhhhcCChhhhHHHH
Q psy14439 193 MDELFSTFCN-VGVSNFSELSACVFSWLEEYCKPQTLKQNI 232 (245)
Q Consensus 193 ~~~lf~sf~~-vs~~s~~~l~~~~~~W~~~~c~~~~lr~~v 232 (245)
...+|.||.. ++..+-++|-+-+..=.+.+..|..+=+.+
T Consensus 447 ~~~~~~Slaaeid~~sqdeLmqafqeqeeiNfRL~~yid~i 487 (502)
T KOG0982|consen 447 TFSLFFSLAAEIDEMSQDELMQAFQEQEEINFRLKFYIDFI 487 (502)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHhHH
Confidence 3456888887 999999999998888888888776655543
No 303
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=25.32 E-value=24 Score=35.05 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 90 RRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVA 154 (245)
Q Consensus 90 RR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~ 154 (245)
=|+....-+..|+..|=.|... +.=|.|-+||| |..++.|+.|++.++.|...
T Consensus 429 ~~~~~~~ei~~lr~~iQ~l~~s---------~~PLgk~~d~i---qEDid~M~~El~~W~~e~~~ 481 (539)
T PF10243_consen 429 ERESVEKEIEKLRESIQTLCRS---------ANPLGKLMDYI---QEDIDSMQKELEMWRSEYRQ 481 (539)
T ss_dssp -----------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHh---------cchHHHHHHHH---HhHHHHHHHHHHHHHHHHHH
Confidence 3666777788888888876542 45577777876 67777888777777666544
No 304
>KOG4797|consensus
Probab=25.18 E-value=3.5e+02 Score=21.52 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
..-+-+.-|+.++.+|.+.+.+|++|..-|+.-.
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3345566677777778888888888777776543
No 305
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=25.10 E-value=1.4e+02 Score=27.40 Aligned_cols=42 Identities=24% Similarity=0.149 Sum_probs=21.7
Q ss_pred CCCCChHHHHHhHHHHhhhcCChhh-hHHHHHHHHHHhhhcCC
Q psy14439 203 VGVSNFSELSACVFSWLEEYCKPQT-LKQNIASVLSRIANSDS 244 (245)
Q Consensus 203 vs~~s~~~l~~~~~~W~~~~c~~~~-lr~~v~~~l~~l~~~~~ 244 (245)
+...-+..|++.+..=+.+.=.... -+-.+..+||.|+..++
T Consensus 258 ~~~~~l~klS~~l~~r~~~~~~~~~~~~~~~~~lLr~ls~s~~ 300 (301)
T PF08202_consen 258 EADQKLQKLSAQLAKRLEERKDQSPARKTLTKELLRGLSESLS 300 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccHHHHHHhcchhhc
Confidence 3334444555554444444332211 11138889999987654
No 306
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.09 E-value=2.5e+02 Score=25.97 Aligned_cols=8 Identities=50% Similarity=0.808 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy14439 149 RKEVVALR 156 (245)
Q Consensus 149 ~~ei~~L~ 156 (245)
|+||..|+
T Consensus 123 RkEIkQLk 130 (305)
T PF15290_consen 123 RKEIKQLK 130 (305)
T ss_pred HHHHHHHH
Confidence 33333333
No 307
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=24.99 E-value=3.4e+02 Score=28.58 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 137 QKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 137 ~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
+..+|++|.+.|++|++.|+...
T Consensus 428 e~~kl~~e~~~l~~ei~~l~~iL 450 (800)
T TIGR01063 428 EREKLQEEYKELLELIADLEDIL 450 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666655433
No 308
>KOG1962|consensus
Probab=24.97 E-value=2.2e+02 Score=25.18 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
...+++.++.++..|+.+.+.+.+|.+.|-
T Consensus 170 ~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 170 KQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 334444444444444444444444444443
No 309
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.92 E-value=1.9e+02 Score=22.18 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+..|.++.+.++++++.|+..++.|+
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (113)
T cd01109 81 LELLEEHREELEEQIAELQETLAYLD 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554443
No 310
>PRK14140 heat shock protein GrpE; Provisional
Probab=24.91 E-value=2.7e+02 Score=24.03 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
+.|..|+.+...+++++..|+.....+.....||...
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR 73 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRR 73 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555544444444444444433
No 311
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.85 E-value=2.2e+02 Score=24.16 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERN 146 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~ 146 (245)
-|...-.-+..|+.++..+.+++.
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ 140 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELK 140 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444333
No 312
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.80 E-value=1.8e+02 Score=22.47 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
..|+++.+.+++++++|+.....|
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l 105 (123)
T cd04770 82 ALLEEKLAEVEAKIAELQALRAEL 105 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 313
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=24.78 E-value=5.1e+02 Score=26.49 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=25.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy14439 78 RRREAHTQAEQKRRDAIKKGYDSLQDLVPTC 108 (245)
Q Consensus 78 ~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~ 108 (245)
..-+.+...|-.||..|...|.+-..++|..
T Consensus 558 T~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~t 588 (663)
T COG0556 558 TDSMQKAIDETERRREIQMAYNEEHGITPQT 588 (663)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 3455567789999999999999999999964
No 314
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=24.77 E-value=4.3e+02 Score=22.39 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14439 143 EERNGLRKEVVALRIMQANYDIMVKAQQTPLG 174 (245)
Q Consensus 143 ~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~ 174 (245)
.|++.+...+..|+..+...+++.......+.
T Consensus 125 ~e~ee~~~~l~~le~~~~~~e~~~~~~~~~~~ 156 (175)
T PRK13182 125 REMEEMLERLQKLEARLKKLEPIYITPDTEPT 156 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Confidence 46666677777777766666766665554433
No 315
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=24.70 E-value=61 Score=26.29 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14439 120 KATVLQKSIDYIQFLVQQK 138 (245)
Q Consensus 120 Ka~IL~kAi~YI~~Lq~~~ 138 (245)
-..++|.|++||++|..+.
T Consensus 121 EgnLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 121 EGNLMQAAAEYIEWLETQL 139 (140)
T ss_pred hhhHHHHHHHHHHHHHhhc
Confidence 4568999999999997653
No 316
>KOG2307|consensus
Probab=24.68 E-value=7.8e+02 Score=25.29 Aligned_cols=132 Identities=12% Similarity=0.083 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 89 KRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEE-ERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 89 kRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~-e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
.++..+-..+..|.+++|.-. ++....+++.|++++-.+.+|+--...++. -....+++|.+++++..+...-+.
T Consensus 137 ldl~~v~~~ieKL~k~L~s~p----sk~q~~~a~sLERiAlelnqlkf~a~h~k~~l~p~~e~ria~~~~~L~qsl~~lf 212 (705)
T KOG2307|consen 137 LDLIYVLVAIEKLSKMLLSPP----SKEQQDGATSLERIALELNQLKFHASHLKGSLFPHSEERIAAEKIILSQSLAVLF 212 (705)
T ss_pred HHHHHHHHHHHHHHHHhcCCc----ccccccccchHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhHHHHHHHHHHHHH
Confidence 345556667888999998732 233567888899988888878765554432 222346667777766666666666
Q ss_pred hcCCCCCccc-------cccccc---hhhHHh-HHhhHHHhhhhcC--C---CCCChHHHHHhHHHHhh-hcCCh
Q psy14439 168 AQQTPLGQTE-------ARLSDE---VKFQVF-QSIMDELFSTFCN--V---GVSNFSELSACVFSWLE-EYCKP 225 (245)
Q Consensus 168 ~~~~~~~~v~-------~r~~~~---~kf~if-~~i~~~lf~sf~~--v---s~~s~~~l~~~~~~W~~-~~c~~ 225 (245)
+.+.+.+... --+.|+ .- -+| ..|.+|.+..|-+ - +.+..+-+.--+++.+- .+|++
T Consensus 213 ~eglqsa~~~l~nclriYatld~t~~ae-~lfr~~vvapyi~evI~eq~~e~sp~gl~~~ykqilefv~~h~c~l 286 (705)
T KOG2307|consen 213 AEGLQSAAGDLQNCLRIYATLDLTESAE-SLFRLLVVAPYIAEVINEQHDETSPSGLLKLYKQILEFVKKHRCTL 286 (705)
T ss_pred HHHhhccHHHHHHHHHHHHHHhhchhHH-HHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 6655331100 000000 00 123 4566777777664 2 33556677788888888 78876
No 317
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=24.63 E-value=2.4e+02 Score=28.34 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 119 SKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 119 sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
.+-.+.+.+-+-++.|.+++++|+..++.+++++++++.....+++.
T Consensus 276 ~~~~~~~~~~~~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~~r~~ 322 (564)
T COG1293 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322 (564)
T ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555667888888899999999999999999888776555543
No 318
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=24.52 E-value=1e+02 Score=30.30 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 136 QQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
.+++.|+.+++.|++||.+|+...
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~l 48 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKL 48 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888886553
No 319
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.29 E-value=4.2e+02 Score=25.77 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhccCCCC
Q psy14439 90 RRDAIKKGYDSLQDLVPTC 108 (245)
Q Consensus 90 RR~~In~~f~~L~~lVP~~ 108 (245)
++..+...+.+|+..+-.+
T Consensus 331 ~~~~~~~~i~el~~~i~~~ 349 (562)
T PHA02562 331 EFNEQSKKLLELKNKISTN 349 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666777776666653
No 320
>PRK04325 hypothetical protein; Provisional
Probab=24.29 E-value=2.4e+02 Score=20.45 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 140 KLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 140 ~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
.|.+.+.+..++|..|+.....+
T Consensus 27 ~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 27 GLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455554444433
No 321
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=24.29 E-value=3.2e+02 Score=20.68 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
.-|..|+.+..++..+++.++..++.-+.+-....
T Consensus 31 s~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN 65 (85)
T PRK09973 31 SNVQTLNAKIARLEQDMKALRPQIYAAKSEANRAN 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888889999988888887765544433
No 322
>PRK00846 hypothetical protein; Provisional
Probab=24.27 E-value=2.8e+02 Score=20.49 Aligned_cols=26 Identities=8% Similarity=-0.096 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|..|-+.+.+++.++..|++++..|.
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666554
No 323
>PF10796 Anti-adapt_IraP: Sigma-S stabilisation anti-adaptor protein ; InterPro: IPR019732 This entry is conserved in Enterobacteriaceae. It is one of a series of proteins, expressed by these bacteria in response to stress, that help to regulate Sigma-S, the stationary phase sigma factor of Escherichia coli and Salmonella. IraP is essential for Sigma-S stabilisation in some but not all starvation conditions []. ; GO: 0005737 cytoplasm
Probab=24.26 E-value=2.3e+02 Score=21.45 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
-|..|-.+..+++++-++|-.+|++|++.+..+
T Consensus 4 li~~lL~KlA~~e~esKeL~AqVEAleivitAL 36 (87)
T PF10796_consen 4 LIAELLAKLAEKEAESKELTAQVEALEIVITAL 36 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788889999999999999988776544
No 324
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.23 E-value=1.9e+02 Score=26.42 Aligned_cols=13 Identities=8% Similarity=0.312 Sum_probs=8.3
Q ss_pred HHhhHHHhhhhcC
Q psy14439 190 QSIMDELFSTFCN 202 (245)
Q Consensus 190 ~~i~~~lf~sf~~ 202 (245)
..+|..+++.|-.
T Consensus 113 ~~~Ir~~l~qyr~ 125 (283)
T PF11285_consen 113 ERQIRRLLDQYRT 125 (283)
T ss_pred HHHHHHHHHHHhh
Confidence 4566667777664
No 325
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=24.22 E-value=1.2e+02 Score=21.18 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 136 QQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.++.+|+.++..++.+++.+.
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 326
>PHA02557 22 prohead core protein; Provisional
Probab=24.21 E-value=4.4e+02 Score=24.14 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
.+|-|..|..+...+++++..|..+..+|+..+..+
T Consensus 139 ~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~ 174 (271)
T PHA02557 139 KVDVVAEMEEELDEMEEELNELFEENVALEEYINEV 174 (271)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777766666666554443
No 327
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=24.16 E-value=3.4e+02 Score=21.81 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=15.7
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQK---KKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 129 ~YI~~Lq~~~---~~l~~e~~~L~~ei~~L~~~ 158 (245)
+|-+.-..+. +.++++++.|+.++++|+..
T Consensus 95 E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~ 127 (134)
T PF07047_consen 95 EYWRSARKEAKKEEELQERLEELEERIEELEEQ 127 (134)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544443332 33445666666666666543
No 328
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.10 E-value=4e+02 Score=21.72 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
|.-|+.++.+.+..++.-.+.+..|
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~L 67 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQEL 67 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333333333
No 329
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=24.09 E-value=6.1e+02 Score=23.90 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhccC
Q psy14439 87 EQKRRDAIKKGYDSLQDLV 105 (245)
Q Consensus 87 ErkRR~~In~~f~~L~~lV 105 (245)
|-||| |.+-|.+|..+-
T Consensus 5 ~dk~r--i~~li~~la~~~ 21 (328)
T PF15369_consen 5 EDKRR--IANLIKELARVS 21 (328)
T ss_pred hHHHH--HHHHHHHHHHhh
Confidence 45665 677777776653
No 330
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=23.99 E-value=1.6e+02 Score=21.66 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~ 156 (245)
++..++|.+..++|+++|+.|+
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE 62 (75)
T TIGR02976 41 QALLQELYAKADRLEERIDTLE 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666663
No 331
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=23.95 E-value=3.1e+02 Score=20.40 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 90 RRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 90 RR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
-+..|...|+.|..+|-.- |..+|.. ++-+. +.....+.+.+..|+..+..|...+.-++..+
T Consensus 40 ~~~~I~~~f~~l~~~L~~~-----------e~~ll~~-l~~~~--~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 40 VEAQIKAAFDELRNALNKR-----------KKQLLED-LEEQK--ENKLKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999998887652 3333332 11111 22234455566666666666665555555554
No 332
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.67 E-value=2.6e+02 Score=27.20 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
+.+|++.++++.+.++.++..+..+++.++..+.+++.
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~ 209 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRK 209 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45777777777777777777777777766555555444
No 333
>KOG1760|consensus
Probab=23.57 E-value=3e+02 Score=22.44 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
..|.+....++.+++.|+.+.+........+..++
T Consensus 84 ~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 84 DQLEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666555554444444444
No 334
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.50 E-value=3.8e+02 Score=24.05 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
|-+-+..|..+...+.+++..|+.+++.|+...
T Consensus 101 ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 101 AKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 335
>PRK01203 prefoldin subunit alpha; Provisional
Probab=23.47 E-value=3.3e+02 Score=22.12 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
.|..+..-++++++.|++++..|+..+..+...+.+-
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L 40 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFL 40 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778899999999999999999988887766554
No 336
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=23.44 E-value=2.5e+02 Score=23.97 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
.+|++|+++|.++|+.|+..+...
T Consensus 123 ~eL~~eI~~L~~~i~~le~~~~~~ 146 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQRLEEIQSKS 146 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776554443
No 337
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=23.36 E-value=1.7e+02 Score=27.09 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
-++.|+.+.++++.+...+++|++.++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777666555443
No 338
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=23.22 E-value=93 Score=24.53 Aligned_cols=62 Identities=24% Similarity=0.230 Sum_probs=34.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 78 RRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTD--SSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 78 ~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~--~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
.-|..|-..|-. -...++++-++..... .+..+.+| |..++++..+|.+..++|+..|++.
T Consensus 9 ~l~~~~~aL~gE-------~~~a~~~l~~t~q~~~s~~sp~~f~~----------~~ege~~~qkL~eqteeLK~kvqe~ 71 (106)
T PF12443_consen 9 RLHAAQEALEGE-------SETACRKLSSTSQKDDSSGSPGIFDK----------IREGEQMIQKLGEQTEELKDKVQEF 71 (106)
T ss_pred HHHHHHHHhhhH-------HHHHHHhcCCCccccCCCCCccccCc----------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566665542 2234555555543322 12344444 3456677777777777777777766
Q ss_pred H
Q psy14439 156 R 156 (245)
Q Consensus 156 ~ 156 (245)
.
T Consensus 72 s 72 (106)
T PF12443_consen 72 S 72 (106)
T ss_pred h
Confidence 4
No 339
>PF12938 M_domain: M domain of GW182
Probab=23.14 E-value=4.1e+02 Score=23.85 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy14439 89 KRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEE-------ERNGLRKEVVALRIMQAN 161 (245)
Q Consensus 89 kRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~-------e~~~L~~ei~~L~~~~~~ 161 (245)
.=+.+++.+|-.-.-|=-.+. ..-..+|..=...|+.|+.....|.. +..++-.+|..+|..+.+
T Consensus 125 qiQ~AV~~G~Ln~qiLnqPL~--------pqtL~LLnQLLq~I~~Lq~~Q~~L~~~~~~~~~~~~q~~~~I~~~kqqI~~ 196 (235)
T PF12938_consen 125 QIQMAVQNGYLNPQILNQPLA--------PQTLTLLNQLLQQIKRLQQQQQNLQRQGNASGQEEQQLAVQINKTKQQIQQ 196 (235)
T ss_pred HHHHHHHhCCcCHHHHCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHH
Confidence 334556666544333322222 23467777777889999888777765 455566667777777777
Q ss_pred HHHHHHhcC
Q psy14439 162 YDIMVKAQQ 170 (245)
Q Consensus 162 ~e~~~~~~~ 170 (245)
++..+.++|
T Consensus 197 lqnQIa~qQ 205 (235)
T PF12938_consen 197 LQNQIAAQQ 205 (235)
T ss_pred HHHHHHHhh
Confidence 766665544
No 340
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=22.99 E-value=2.9e+02 Score=19.90 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEV 152 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei 152 (245)
.++|..++-.++.+.+.++-|++...++.+|-
T Consensus 25 ~tll~l~~l~v~sv~qrr~iL~~v~r~~aRea 56 (67)
T COG3114 25 MTLLPLAVLVVHSVLQRRAILRGVARQRAREA 56 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999998888877664
No 341
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.99 E-value=3.9e+02 Score=24.81 Aligned_cols=17 Identities=12% Similarity=0.301 Sum_probs=10.3
Q ss_pred HHhhHHHhhhhcC-CCCC
Q psy14439 190 QSIMDELFSTFCN-VGVS 206 (245)
Q Consensus 190 ~~i~~~lf~sf~~-vs~~ 206 (245)
-.++-..|-+|.+ .+..
T Consensus 313 D~llaaa~isY~G~f~~~ 330 (344)
T PF12777_consen 313 DSLLAAAFISYLGPFTPE 330 (344)
T ss_dssp HHHHHHHHHHCCCCTSHH
T ss_pred HHHHHHHHHHHcCCCCHH
Confidence 4455555888887 4433
No 342
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.89 E-value=2.8e+02 Score=19.55 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 134 LVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+..+.+..+.++..|..+|+.|+..
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555443
No 343
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.89 E-value=5.5e+02 Score=25.09 Aligned_cols=16 Identities=6% Similarity=0.027 Sum_probs=11.2
Q ss_pred hhhHHhHHhhHHHhhh
Q psy14439 184 VKFQVFQSIMDELFST 199 (245)
Q Consensus 184 ~kf~if~~i~~~lf~s 199 (245)
-.+-+...+++.+|.+
T Consensus 112 ~qr~~La~~L~A~~r~ 127 (420)
T COG4942 112 EQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3456677888888775
No 344
>KOG4643|consensus
Probab=22.88 E-value=3.3e+02 Score=29.70 Aligned_cols=45 Identities=20% Similarity=0.057 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
.+.|..+-.-|+.|+++.++--+-+.+|+.|++.|++.+..+.|.
T Consensus 176 ~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe 220 (1195)
T KOG4643|consen 176 EVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQE 220 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667788888877776666666666666666665554443
No 345
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.82 E-value=4.6e+02 Score=27.31 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
..-|...-+.++.|++..++|.+++++..+..+.|.....++-+.+..
T Consensus 578 l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 578 LKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556666666777777777777777766666665544444444433
No 346
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.69 E-value=2.2e+02 Score=24.16 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
..+.++|+.|+..++.||..|+......+...
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~ 59 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHC 59 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 347
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=22.67 E-value=2e+02 Score=20.04 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 141 LEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 141 l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
++.++.+|.++++.++..+..++..+.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456778888888888777777776663
No 348
>PRK14161 heat shock protein GrpE; Provisional
Probab=22.60 E-value=4.3e+02 Score=22.51 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 122 TVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 122 ~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
+|..-+-+-+..++.+.+.++++++.|+.....+.+...||...
T Consensus 12 ~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR 55 (178)
T PRK14161 12 TINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKR 55 (178)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444455555555555555554444444444433
No 349
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=22.58 E-value=3.1e+02 Score=22.16 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
.|.+|+.+++.++.-...|.+.|.-|+..
T Consensus 33 rIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 33 RIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666677777666544
No 350
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=22.54 E-value=2.9e+02 Score=22.36 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=33.5
Q ss_pred HHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 97 GYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 97 ~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.|+.|=+-+|.... +-.. =...|+.|+.+++...+++...-++-++|-
T Consensus 84 qIe~LIdsLPg~~~--------see~----Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll 131 (144)
T PF11221_consen 84 QIEYLIDSLPGIEV--------SEEE----QLKRIKELEEENEEAEEELQEAVKEAEELL 131 (144)
T ss_dssp HHHHHHHHSTTSSS---------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCC--------CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888898642 2222 236788899988888888877766666654
No 351
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=22.46 E-value=4.3e+02 Score=22.70 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=8.5
Q ss_pred hhHHhHHhhHHHhhhhc
Q psy14439 185 KFQVFQSIMDELFSTFC 201 (245)
Q Consensus 185 kf~if~~i~~~lf~sf~ 201 (245)
+|.-++..++.=+..|.
T Consensus 165 ~~e~is~~~k~El~rF~ 181 (216)
T cd07627 165 EFEEVSELIKSELERFE 181 (216)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555554
No 352
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.42 E-value=1.8e+02 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+-+..+|++..+|+.|++.|+..+...+
T Consensus 57 ~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 57 KELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555544444
No 353
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=22.35 E-value=1.2e+02 Score=22.38 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGL 148 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L 148 (245)
++-|-.|-+++..|++++..|
T Consensus 62 i~lil~LLd~i~~L~~el~~L 82 (84)
T PF13591_consen 62 IALILDLLDRIEQLRRELREL 82 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444443
No 354
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=22.32 E-value=3e+02 Score=21.52 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
+.++++++-|.=..++|.++|+.|
T Consensus 43 Rk~eqE~dSL~FrN~QL~kRV~~L 66 (102)
T PF10205_consen 43 RKLEQENDSLTFRNQQLTKRVEVL 66 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444
No 355
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=22.20 E-value=1.6e+02 Score=29.73 Aligned_cols=39 Identities=26% Similarity=0.219 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 120 KATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 120 Ka~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
...-+.+..+-|..|.++.+++++++++++++++.|+..
T Consensus 91 ~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~ 129 (646)
T PRK05771 91 VEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPW 129 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455677888889999999999999999999999988743
No 356
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.11 E-value=5.5e+02 Score=22.80 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.-.+|..+.++...|..|....-+++......+..++.++
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555444444444444444444444433
No 357
>KOG0837|consensus
Probab=22.10 E-value=2.6e+02 Score=25.60 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
.|.|+.|+..++.+..+...|..++..|+.......+.
T Consensus 226 LdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~ 263 (279)
T KOG0837|consen 226 LDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQK 263 (279)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 35555566555555555555555555554444433333
No 358
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.02 E-value=4.4e+02 Score=21.46 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKE 151 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~e 151 (245)
...|++..+||+.|+...+.+..+++.+.+.
T Consensus 54 e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 54 EAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466666777777766666666666655554
No 359
>KOG1853|consensus
Probab=21.97 E-value=2.5e+02 Score=25.76 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKK---LEEERNGLRKEVVALRIM 158 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~---l~~e~~~L~~ei~~L~~~ 158 (245)
-|..||+.+.+|..+..+ +-+.+++|+.|...|+..
T Consensus 141 rLnqAIErnAfLESELdEke~llesvqRLkdEardlrqe 179 (333)
T KOG1853|consen 141 RLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466799999988876544 557778888887777543
No 360
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=21.89 E-value=3.2e+02 Score=24.03 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
...|...++=+..+.+++.++++++..|++++......
T Consensus 29 deFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 29 DEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34566677767777788888888888888888776554
No 361
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.88 E-value=2.9e+02 Score=21.28 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
...|+++.+.+++++++|+.....|+..
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (116)
T cd04769 81 QQALEDKKQEIRAQITELQQLLARLDAF 108 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665555555433
No 362
>KOG1488|consensus
Probab=21.87 E-value=3.7e+02 Score=26.81 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=26.4
Q ss_pred hhHHHhhh--hcCCCCCChHHHHHhHHHHhhhcCChhhhHHHHHHHHHHhh
Q psy14439 192 IMDELFST--FCNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSRIA 240 (245)
Q Consensus 192 i~~~lf~s--f~~vs~~s~~~l~~~~~~W~~~~c~~~~lr~~v~~~l~~l~ 240 (245)
|++.+... ...|++.-+. +-|+.=+=|||+-...++++-++++.+.
T Consensus 318 iv~~f~~~~~~~~ls~~~YG---CRVIQr~lE~c~~~~~~~i~~ei~~~~~ 365 (503)
T KOG1488|consen 318 IVDFFSGDDNLLELSTHKYG---CRVIQRILEHCSEDQKQPLMEEIIRNCD 365 (503)
T ss_pred HHHHhcCCCceeEeeccCcc---cHHHHHHhhcCChHhhhHHHHHHHHHHH
Confidence 44444442 2225555544 2234444579999999987777666553
No 363
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.82 E-value=2.1e+02 Score=21.41 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
-+...-+-|+.|+.+...++.+++.++.++.-|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555555555555555443
No 364
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.66 E-value=62 Score=32.05 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
-|..|++++++|++++..|.++|+..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchh
Confidence 45566666666666666665555554
No 365
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=21.59 E-value=2.1e+02 Score=22.91 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14439 134 LVQQKKKLEEERNGLRKEVV 153 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~ 153 (245)
|+.....|+.++.+|+.+++
T Consensus 6 Lk~~~~~L~~~~~~le~~i~ 25 (171)
T PF03357_consen 6 LKKTIRRLEKQIKRLEKKIK 25 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 366
>PRK11239 hypothetical protein; Provisional
Probab=21.57 E-value=1.8e+02 Score=25.76 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 136 QQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
.....|++++..|+.||.+|+.....+..
T Consensus 183 ~~~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 183 AVDGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466889999999999999866555443
No 367
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=21.54 E-value=2.9e+02 Score=21.30 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+..=.........++..|..++..|+..+..++..+
T Consensus 69 a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 69 AEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455566666666666666555555554
No 368
>KOG4343|consensus
Probab=21.50 E-value=85 Score=31.57 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|+.|.++++.|+.|...|++++++|.
T Consensus 311 Lq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 311 LQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 34444444444444444444444443
No 369
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.47 E-value=6.1e+02 Score=26.37 Aligned_cols=16 Identities=19% Similarity=0.435 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14439 87 EQKRRDAIKKGYDSLQ 102 (245)
Q Consensus 87 ErkRR~~In~~f~~L~ 102 (245)
||+-|..+-..+.+.+
T Consensus 500 E~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 500 ERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 370
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.35 E-value=7.6e+02 Score=24.17 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
-.++..++.++..++..++..|.+++++|+..+..++..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555544444444433
No 371
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.33 E-value=3.4e+02 Score=22.13 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
...+..+++.++.+...+..+|..|..
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~ 42 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQK 42 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 372
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.32 E-value=3.3e+02 Score=20.85 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14439 141 LEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 141 l~~e~~~L~~ei~~L~~~~ 159 (245)
+++++..+++++.+|+..+
T Consensus 86 l~~~~~~l~~~i~~L~~~~ 104 (112)
T cd01282 86 LRRELARIDRQIADLTRSR 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 373
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=21.26 E-value=36 Score=23.48 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=29.6
Q ss_pred cccccchhhHH------hHHhhHHHhhhhcC----CCCCCh-HHHHHhHHHHhhhc
Q psy14439 178 ARLSDEVKFQV------FQSIMDELFSTFCN----VGVSNF-SELSACVFSWLEEY 222 (245)
Q Consensus 178 ~r~~~~~kf~i------f~~i~~~lf~sf~~----vs~~s~-~~l~~~~~~W~~~~ 222 (245)
-.++|+-.|.| .+.+++.|++.... |.+.+. .+.-.-+++|++.|
T Consensus 5 L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~H 60 (62)
T PF03931_consen 5 LVSSDGQEFEVSREAAKQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEHH 60 (62)
T ss_dssp EEETTSEEEEEEHHHHTTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHHH
T ss_pred EEcCCCCEEEeeHHHHHHhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHhc
Confidence 45667777766 67788888887664 333332 34446688898876
No 374
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.24 E-value=2e+02 Score=21.10 Aligned_cols=16 Identities=56% Similarity=0.646 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14439 141 LEEERNGLRKEVVALR 156 (245)
Q Consensus 141 l~~e~~~L~~ei~~L~ 156 (245)
|.++++.|+++++.|+
T Consensus 70 l~~~~~~l~~~l~~l~ 85 (91)
T cd04766 70 LEEELAELRAELDELR 85 (91)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555554
No 375
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.13 E-value=4.5e+02 Score=23.53 Aligned_cols=34 Identities=6% Similarity=-0.126 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
-..-|..|++++.+|.-+++++..+++.++..+.
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 92 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455666666766666666666666666655443
No 376
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=21.12 E-value=4.5e+02 Score=27.42 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=18.3
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLV------QQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 127 Ai~YI~~Lq------~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
-++||-.++ .+..++++|.+.|+++++.|+..
T Consensus 422 qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~i 459 (742)
T PRK05561 422 QAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAI 459 (742)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556665443 33455666666666666666544
No 377
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=21.03 E-value=1.7e+02 Score=27.52 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 143 EERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 143 ~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.+++.+-++|.+|+..+.+++..+
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l 312 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRL 312 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555655555544443
No 378
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.00 E-value=3.3e+02 Score=19.66 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
..++.+--..++.+......+..+++.+..+++.|+.
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666666666555553
No 379
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.00 E-value=4.4e+02 Score=21.13 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhc
Q psy14439 88 QKRRDAIKKGYDSLQD 103 (245)
Q Consensus 88 rkRR~~In~~f~~L~~ 103 (245)
...|+.+...+..|..
T Consensus 51 ~~~~e~l~~~~~~l~~ 66 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRS 66 (151)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344555555444443
No 380
>KOG1248|consensus
Probab=20.89 E-value=1.4e+02 Score=32.62 Aligned_cols=51 Identities=22% Similarity=0.401 Sum_probs=41.7
Q ss_pred hHHhhHHHhhhhcC--CCCCC-hHHHHHhHHHHhhhcCChhhhHHHHHHHHHHhhhc
Q psy14439 189 FQSIMDELFSTFCN--VGVSN-FSELSACVFSWLEEYCKPQTLKQNIASVLSRIANS 242 (245)
Q Consensus 189 f~~i~~~lf~sf~~--vs~~s-~~~l~~~~~~W~~~~c~~~~lr~~v~~~l~~l~~~ 242 (245)
+.--|..||=+||. |++.. |.+|.++...-|... +.||+.|.++|+.|-++
T Consensus 494 l~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~---~elr~~Ic~sL~~Lv~~ 547 (1176)
T KOG1248|consen 494 LVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR---PELRETICNSLRMLVEQ 547 (1176)
T ss_pred HHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc---hHhHHHHHHHHHHHHHc
Confidence 44445666889997 88666 999999999988765 38999999999999776
No 381
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.82 E-value=4e+02 Score=20.73 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVA 154 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~ 154 (245)
....+.+..|+++.+.+++.++.|...+..
T Consensus 83 ~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 83 EKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555444444444433
No 382
>PHA02047 phage lambda Rz1-like protein
Probab=20.68 E-value=4.1e+02 Score=20.66 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
-+-++.|..+.+.++.++..+++.|.+|+..
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666544
No 383
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=20.61 E-value=4.5e+02 Score=21.08 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCchH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 90 RRDAIKKGYDSLQDLVPTCHQTDSSGYKLSK--ATVLQK--SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 90 RR~~In~~f~~L~~lVP~~~~~~~~~~K~sK--a~IL~k--Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
++..|-..+.+....+-.|..-+. ...+-| +.+|=+ ==+-+..|..+...++-++..|+++.+.|+.....++..
T Consensus 28 qk~~le~qL~E~~~al~Ele~l~e-D~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 28 QKQQLEAQLKEIEKALEELEKLDE-DAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc-ccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557778888887777776653221 111111 112221 124567788888888888888888888887777777776
Q ss_pred HHhcCC
Q psy14439 166 VKAQQT 171 (245)
Q Consensus 166 ~~~~~~ 171 (245)
+.....
T Consensus 107 i~~~l~ 112 (119)
T COG1382 107 IQKALG 112 (119)
T ss_pred HHHHhh
Confidence 655443
No 384
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.56 E-value=5.1e+02 Score=21.69 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
...|.+-.+.||-+..-++++-..|+..-+.|+....+++
T Consensus 79 ik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 79 IKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665555555555555554444444443333
No 385
>COG5570 Uncharacterized small protein [Function unknown]
Probab=20.52 E-value=1.2e+02 Score=20.95 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRK 150 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ 150 (245)
|..|++.+-.++++++.|+.
T Consensus 35 i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 35 IRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45566666655555555543
No 386
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=20.51 E-value=4.4e+02 Score=20.91 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 120 KATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 120 Ka~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
.+..|..--.||..|...+..+...+..++.+++..+.
T Consensus 62 ~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~ 99 (147)
T PRK05689 62 TSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARK 99 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888899999999999999888888888877653
No 387
>PF03955 Adeno_PIX: Adenovirus hexon-associated protein (IX); InterPro: IPR005641 Hexon (IPR000736 from INTERPRO) is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer, 240 copies of which are present in the capsid, organised so that 12 lie on each of the 20 facets of this structure. The central 9 hexons in a facet are cemented together by 12 copies of protein IX []. Protein IX is not neccessarily required for viral replication, but has been shown to affect several processes including DNA-packaging capacity, thermostability, and the transcriptional activity of several promoters. For more information see [].; GO: 0031423 hexon binding, 0044423 virion part; PDB: 3IYN_T.
Probab=20.49 E-value=1.8e+02 Score=22.99 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L 155 (245)
+.+...+.+++++|++++.+|
T Consensus 89 ~~~l~~l~a~Le~l~~~L~~~ 109 (109)
T PF03955_consen 89 EDKLTALLAQLEALKQQLAEL 109 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 666666667777776666553
No 388
>KOG3856|consensus
Probab=20.40 E-value=2.4e+02 Score=23.02 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
++.|-++++++++.+.-|+++|-+++
T Consensus 19 L~elikkrqe~eetl~nLe~qIY~~E 44 (135)
T KOG3856|consen 19 LAELIKKRQELEETLANLERQIYAFE 44 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555556666665554
No 389
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.32 E-value=5.4e+02 Score=22.14 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEV 152 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei 152 (245)
|...=.+.|+.|+.++..|.......++++
T Consensus 21 IT~~NL~lIksLKeei~emkk~e~~~~k~m 50 (201)
T PF13851_consen 21 ITLNNLELIKSLKEEIAEMKKKEERNEKLM 50 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554444333333
No 390
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=20.29 E-value=2.6e+02 Score=24.27 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=22.4
Q ss_pred HHHHHHhccCCC--CCCCCCCCCCchHHHHHHHHHHHHHHHH
Q psy14439 96 KGYDSLQDLVPT--CHQTDSSGYKLSKATVLQKSIDYIQFLV 135 (245)
Q Consensus 96 ~~f~~L~~lVP~--~~~~~~~~~K~sKa~IL~kAi~YI~~Lq 135 (245)
+-|-.|..+-+. ..+......++=||.+|.+|++-|+.+-
T Consensus 49 diY~sL~~~~~~~~~~k~~k~~e~VLKAALLrRavedIrR~~ 90 (190)
T PF09802_consen 49 DIYLSLLHMEDPPASEKKPKVPEKVLKAALLRRAVEDIRRII 90 (190)
T ss_pred HHHHHHHhccCCccccccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 445566666432 1111111234558999999998887643
No 391
>PHA03011 hypothetical protein; Provisional
Probab=20.20 E-value=1.9e+02 Score=22.73 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 138 KKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 138 ~~~l~~e~~~L~~ei~~L~~~ 158 (245)
.+...+++..|+.|++.|+..
T Consensus 94 IQdn~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 94 IQDNDDEIHFLRAEIDKLKEN 114 (120)
T ss_pred HHhchHHHHHHHHHHHHHHHH
Confidence 333334444445555555433
No 392
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=20.16 E-value=1.3e+02 Score=22.93 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 140 KLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 140 ~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
.|-++++.|++|+..|+.....|.++
T Consensus 75 ~LLd~i~~Lr~el~~L~~~l~~~~~~ 100 (101)
T PRK10265 75 TLLDEIAHLKQENRLLRQRLSRFVAH 100 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
No 393
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=20.15 E-value=3.8e+02 Score=22.29 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14439 136 QQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L 155 (245)
.+.++.+.+.+.|+++.++.
T Consensus 80 ~~~~~~~~e~~~l~~~A~~~ 99 (157)
T PF14235_consen 80 KEKARYKSEAEELEAKAKEA 99 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443333
No 394
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.07 E-value=4.1e+02 Score=20.39 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
|+.|+.+...|..++..+...|..+
T Consensus 83 i~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 83 IKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 395
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.07 E-value=2.7e+02 Score=21.73 Aligned_cols=35 Identities=9% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
+....|+++.+.++++++.|+.-...|+.....++
T Consensus 79 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 113 (127)
T cd04784 79 EVNALIDEHLAHVRARIAELQALEKQLQALRERCD 113 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Done!