Query psy14439
Match_columns 245
No_of_seqs 266 out of 1236
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 19:53:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkp_A C-MYC, MYC proto-oncoge 99.8 2E-19 6.8E-24 135.7 11.6 81 77-161 4-84 (88)
2 1nkp_B MAX protein, MYC proto- 99.8 1.2E-19 4.2E-24 135.2 10.2 76 79-159 2-77 (83)
3 1am9_A Srebp-1A, protein (ster 99.8 2.1E-19 7.3E-24 133.8 10.6 75 76-156 3-77 (82)
4 1nlw_A MAD protein, MAX dimeri 99.8 2.9E-19 9.9E-24 132.5 10.9 75 80-158 2-76 (80)
5 4ati_A MITF, microphthalmia-as 99.8 1.7E-19 5.8E-24 142.9 7.8 94 73-169 21-117 (118)
6 1hlo_A Protein (transcription 99.8 2E-19 6.9E-24 133.2 6.7 72 75-151 8-79 (80)
7 1a0a_A BHLH, protein (phosphat 99.7 9.6E-19 3.3E-23 124.1 1.1 60 79-138 2-61 (63)
8 4h10_B Circadian locomoter out 99.7 2.3E-16 7.7E-21 114.2 8.2 60 76-141 5-64 (71)
9 1an4_A Protein (upstream stimu 99.6 9E-18 3.1E-22 119.5 -0.1 61 77-138 3-63 (65)
10 3u5v_A Protein MAX, transcript 99.6 9.2E-17 3.1E-21 117.9 2.6 62 77-142 3-65 (76)
11 4h10_A ARYL hydrocarbon recept 99.6 5.1E-16 1.7E-20 113.1 4.4 59 75-136 5-63 (73)
12 1mdy_A Protein (MYOD BHLH doma 99.5 5.1E-14 1.7E-18 101.1 8.4 58 75-137 8-65 (68)
13 2ql2_B Neurod1, neurogenic dif 99.5 5.5E-14 1.9E-18 98.6 7.3 56 79-138 2-57 (60)
14 4ath_A MITF, microphthalmia-as 99.5 4.5E-13 1.5E-17 99.2 10.9 77 91-170 4-83 (83)
15 2lfh_A DNA-binding protein inh 99.1 2.3E-11 7.9E-16 86.7 2.8 47 86-136 21-67 (68)
16 4f3l_B BMAL1B; BHLH, PAS, circ 99.1 6.9E-11 2.4E-15 109.5 4.2 61 73-136 7-67 (387)
17 4f3l_A Mclock, circadian locom 99.0 2.2E-10 7.5E-15 104.9 6.0 57 75-137 8-64 (361)
18 4aya_A DNA-binding protein inh 98.8 1.7E-08 5.7E-13 76.8 6.9 49 87-139 33-81 (97)
19 2wt7_A Proto-oncogene protein 95.9 0.038 1.3E-06 38.3 7.5 45 125-169 19-63 (63)
20 1jnm_A Proto-oncogene C-JUN; B 94.6 0.058 2E-06 37.1 5.1 43 126-168 19-61 (62)
21 1t2k_D Cyclic-AMP-dependent tr 94.5 0.15 5E-06 34.9 6.9 42 125-166 18-59 (61)
22 3ra3_B P2F; coiled coil domain 92.9 0.086 2.9E-06 29.9 2.8 26 131-156 2-27 (28)
23 1hjb_A Ccaat/enhancer binding 91.9 1.9 6.5E-05 31.7 9.9 55 76-156 16-70 (87)
24 1ci6_A Transcription factor AT 91.7 0.82 2.8E-05 31.4 7.2 39 128-166 22-60 (63)
25 2yy0_A C-MYC-binding protein; 91.4 0.36 1.2E-05 32.3 5.0 24 133-156 23-46 (53)
26 2jee_A YIIU; FTSZ, septum, coi 91.2 1.1 3.6E-05 32.7 7.7 34 124-157 15-48 (81)
27 1uii_A Geminin; human, DNA rep 90.1 1.3 4.3E-05 32.4 7.2 42 123-164 40-81 (83)
28 4dzn_A Coiled-coil peptide CC- 90.0 0.71 2.4E-05 27.1 4.7 26 131-156 4-29 (33)
29 1gu4_A CAAT/enhancer binding p 89.6 3.4 0.00012 29.6 9.3 55 76-156 16-70 (78)
30 2yy0_A C-MYC-binding protein; 89.4 0.35 1.2E-05 32.3 3.5 41 126-166 2-49 (53)
31 3v86_A De novo design helix; c 89.3 0.4 1.4E-05 26.9 3.1 26 130-155 1-26 (27)
32 2oqq_A Transcription factor HY 89.3 1.8 6.2E-05 27.5 6.5 37 129-165 3-39 (42)
33 4dzn_A Coiled-coil peptide CC- 88.9 1.1 3.6E-05 26.3 4.8 28 137-164 3-30 (33)
34 1dh3_A Transcription factor CR 88.2 0.84 2.9E-05 30.6 4.8 28 129-156 22-49 (55)
35 1gd2_E Transcription factor PA 87.2 1.4 4.9E-05 31.0 5.8 30 129-158 29-58 (70)
36 2dgc_A Protein (GCN4); basic d 86.5 1.6 5.3E-05 30.1 5.5 32 126-157 27-58 (63)
37 1wlq_A Geminin; coiled-coil; 2 86.4 2.9 9.8E-05 30.5 7.0 45 122-166 31-75 (83)
38 1gu4_A CAAT/enhancer binding p 85.9 1.5 5E-05 31.6 5.3 44 126-169 33-76 (78)
39 2wt7_A Proto-oncogene protein 85.7 6.5 0.00022 26.7 8.6 31 129-159 30-60 (63)
40 1ci6_A Transcription factor AT 85.5 1.9 6.6E-05 29.5 5.6 57 77-159 4-60 (63)
41 2wvr_A Geminin; DNA replicatio 85.3 2.7 9.3E-05 35.5 7.4 46 121-166 107-152 (209)
42 3ra3_B P2F; coiled coil domain 85.1 0.8 2.7E-05 25.9 2.8 24 139-162 3-26 (28)
43 1kd8_A GABH AIV, GCN4 acid bas 84.8 2.2 7.7E-05 26.1 4.9 32 131-162 3-34 (36)
44 3muj_A Transcription factor CO 84.1 1.6 5.5E-05 34.8 5.2 41 92-135 94-134 (138)
45 1kd8_B GABH BLL, GCN4 acid bas 83.1 4.4 0.00015 24.8 5.7 30 131-160 3-32 (36)
46 2zxx_A Geminin; coiled-coil, c 82.0 4.3 0.00015 29.3 6.4 45 122-166 27-71 (79)
47 3a2a_A Voltage-gated hydrogen 81.1 6.5 0.00022 26.4 6.5 48 126-173 8-55 (58)
48 3vmx_A Voltage-gated hydrogen 80.8 8.2 0.00028 25.2 6.8 42 130-171 5-46 (48)
49 1jnm_A Proto-oncogene C-JUN; B 80.7 2.2 7.4E-05 29.0 4.3 56 77-158 3-58 (62)
50 1hjb_A Ccaat/enhancer binding 79.4 2.9 9.9E-05 30.7 4.8 46 125-170 32-77 (87)
51 1t2k_D Cyclic-AMP-dependent tr 78.7 7.8 0.00027 26.0 6.6 28 131-158 31-58 (61)
52 3m48_A General control protein 77.5 3.6 0.00012 24.8 3.9 26 132-157 3-28 (33)
53 2oxj_A Hybrid alpha/beta pepti 76.8 6.8 0.00023 23.6 5.0 28 131-158 3-30 (34)
54 3he5_B Synzip2; heterodimeric 74.7 11 0.00037 24.1 5.8 35 132-166 13-47 (52)
55 3c3g_A Alpha/beta peptide with 74.6 7.8 0.00027 23.2 4.8 28 131-158 2-29 (33)
56 3ra3_A P1C; coiled coil domain 74.0 3.4 0.00012 23.3 2.9 24 133-156 4-27 (28)
57 2w6b_A RHO guanine nucleotide 73.6 17 0.0006 24.2 6.9 41 128-168 9-49 (56)
58 2wq1_A General control protein 73.3 9.7 0.00033 22.8 5.0 27 131-157 2-28 (33)
59 3c3f_A Alpha/beta peptide with 72.8 10 0.00034 22.9 5.0 28 131-158 3-30 (34)
60 3he5_B Synzip2; heterodimeric 72.1 16 0.00056 23.3 6.3 41 122-162 6-50 (52)
61 3hnw_A Uncharacterized protein 70.0 34 0.0012 26.8 9.2 58 92-158 35-97 (138)
62 3nmd_A CGMP dependent protein 68.9 8.2 0.00028 27.3 4.8 29 127-155 31-59 (72)
63 1zme_C Proline utilization tra 67.2 3.7 0.00013 27.7 2.7 24 129-152 44-67 (70)
64 1t6f_A Geminin; coiled-coil, c 67.1 19 0.00065 22.0 5.7 27 130-156 8-34 (37)
65 1go4_E MAD1 (mitotic arrest de 66.9 14 0.00048 27.7 6.0 31 129-159 12-42 (100)
66 2wg5_A General control protein 66.1 5.5 0.00019 30.1 3.7 26 131-156 9-34 (109)
67 1fmh_A General control protein 65.5 17 0.00059 21.1 4.8 25 132-156 4-28 (33)
68 2hy6_A General control protein 65.5 12 0.0004 22.6 4.2 28 131-158 3-30 (34)
69 3mq7_A Bone marrow stromal ant 65.3 34 0.0011 26.4 7.9 30 131-160 73-102 (121)
70 3nmd_A CGMP dependent protein 65.3 22 0.00074 25.1 6.4 36 131-166 21-56 (72)
71 2wuj_A Septum site-determining 65.0 6.1 0.00021 26.4 3.4 28 129-156 27-54 (57)
72 2bni_A General control protein 64.6 11 0.00039 22.7 4.1 28 131-158 3-30 (34)
73 1uo4_A General control protein 64.5 11 0.00039 22.7 4.1 27 131-157 3-29 (34)
74 3s4r_A Vimentin; alpha-helix, 64.1 23 0.00079 25.9 6.7 20 129-148 23-42 (93)
75 1a93_B MAX protein, coiled coi 64.0 8.9 0.0003 23.2 3.5 23 134-156 5-27 (34)
76 2akf_A Coronin-1A; coiled coil 62.3 18 0.00061 21.1 4.5 20 132-151 9-28 (32)
77 2l5g_A GPS2 protein, G protein 61.9 25 0.00086 21.6 5.4 31 118-148 4-34 (38)
78 1a93_B MAX protein, coiled coi 61.8 11 0.00037 22.9 3.6 24 132-155 10-33 (34)
79 2ke4_A CDC42-interacting prote 61.3 16 0.00053 27.2 5.3 35 131-165 17-51 (98)
80 2zqm_A Prefoldin beta subunit 61.1 25 0.00086 25.9 6.7 63 94-156 39-104 (117)
81 2wt7_B Transcription factor MA 60.9 40 0.0014 24.7 7.4 35 129-163 48-82 (90)
82 2jee_A YIIU; FTSZ, septum, coi 60.6 34 0.0012 24.6 6.8 25 132-156 9-33 (81)
83 3mq9_A Bone marrow stromal ant 60.4 21 0.00072 32.7 7.3 70 89-167 397-467 (471)
84 3m48_A General control protein 60.3 13 0.00046 22.2 3.8 27 140-166 4-30 (33)
85 2wuj_A Septum site-determining 59.9 10 0.00035 25.3 3.7 31 122-152 27-57 (57)
86 2oqq_A Transcription factor HY 59.8 21 0.00071 22.6 4.8 32 129-160 10-41 (42)
87 3o0z_A RHO-associated protein 58.9 52 0.0018 26.8 8.5 44 129-172 111-162 (168)
88 3m9b_A Proteasome-associated A 58.7 12 0.0004 32.7 4.8 33 126-158 58-90 (251)
89 4emc_A Monopolin complex subun 57.9 20 0.00069 29.8 5.9 43 124-166 15-57 (190)
90 3w03_C DNA repair protein XRCC 57.6 29 0.001 28.7 6.9 31 123-153 146-176 (184)
91 3gpv_A Transcriptional regulat 57.5 15 0.00053 28.7 5.1 39 130-168 96-134 (148)
92 2pnv_A Small conductance calci 55.2 28 0.00095 22.1 5.0 32 127-158 7-38 (43)
93 2r2v_A GCN4 leucine zipper; co 54.8 32 0.0011 20.7 4.8 27 131-157 3-29 (34)
94 2aze_A Transcription factor DP 54.5 38 0.0013 27.3 6.9 41 127-167 3-43 (155)
95 3m9b_A Proteasome-associated A 54.2 17 0.00058 31.6 5.1 45 130-174 55-99 (251)
96 2xdj_A Uncharacterized protein 54.2 42 0.0014 24.1 6.5 26 131-156 22-47 (83)
97 3w03_C DNA repair protein XRCC 52.8 34 0.0012 28.3 6.5 47 117-163 132-179 (184)
98 1go4_E MAD1 (mitotic arrest de 52.6 46 0.0016 24.9 6.6 34 136-169 12-45 (100)
99 3cve_A Homer protein homolog 1 52.4 58 0.002 22.9 7.3 37 127-163 5-41 (72)
100 1jcd_A Major outer membrane li 51.8 48 0.0016 21.8 6.2 28 131-158 6-33 (52)
101 3qh9_A Liprin-beta-2; coiled-c 51.8 37 0.0013 24.4 5.7 35 135-169 18-52 (81)
102 2dgc_A Protein (GCN4); basic d 51.4 24 0.00082 23.9 4.6 22 132-153 40-61 (63)
103 3s9g_A Protein hexim1; cyclin 51.1 55 0.0019 24.4 6.7 41 118-162 30-77 (104)
104 1t3u_A Conserved hypothetical 50.7 69 0.0024 23.3 9.5 58 92-158 33-90 (104)
105 1fxk_A Prefoldin; archaeal pro 50.4 51 0.0017 23.7 6.7 64 93-156 33-99 (107)
106 2akf_A Coronin-1A; coiled coil 50.2 26 0.00088 20.4 3.8 25 133-157 3-27 (32)
107 3tnu_B Keratin, type II cytosk 49.3 34 0.0012 26.1 5.8 13 95-107 14-26 (129)
108 3ljm_A Coil Ser L9C; de novo d 49.0 36 0.0012 19.5 4.3 24 133-156 5-28 (31)
109 4e61_A Protein BIM1; EB1-like 48.9 41 0.0014 25.4 5.8 11 189-199 89-99 (106)
110 3mq7_A Bone marrow stromal ant 48.5 47 0.0016 25.5 6.2 28 129-156 78-105 (121)
111 2w6a_A ARF GTPase-activating p 48.4 61 0.0021 22.0 6.9 35 128-162 26-60 (63)
112 3q4f_C DNA repair protein XRCC 47.5 28 0.00097 28.8 5.2 29 123-151 155-183 (186)
113 1uii_A Geminin; human, DNA rep 47.3 40 0.0014 24.4 5.3 18 141-158 51-68 (83)
114 3s4r_A Vimentin; alpha-helix, 47.3 44 0.0015 24.4 5.8 33 128-160 55-87 (93)
115 1fxk_C Protein (prefoldin); ar 47.1 51 0.0017 24.9 6.5 39 127-165 6-44 (133)
116 3u59_A Tropomyosin beta chain; 47.0 78 0.0027 23.1 7.2 36 127-162 21-56 (101)
117 1gmj_A ATPase inhibitor; coile 47.0 79 0.0027 22.8 7.4 27 130-156 52-78 (84)
118 1kd8_B GABH BLL, GCN4 acid bas 46.2 47 0.0016 20.2 4.7 29 139-167 4-32 (36)
119 1bb1_B Designed, thermostable 45.7 45 0.0015 19.7 5.3 27 131-157 4-30 (36)
120 3cvf_A Homer-3, homer protein 45.0 64 0.0022 23.0 6.1 37 127-163 11-47 (79)
121 2j5u_A MREC protein; bacterial 44.9 10 0.00036 32.7 2.3 42 127-168 17-61 (255)
122 3m91_A Proteasome-associated A 44.3 64 0.0022 21.1 6.7 32 129-160 16-47 (51)
123 3gp4_A Transcriptional regulat 43.6 56 0.0019 25.3 6.3 35 131-165 83-117 (142)
124 3oja_A Leucine-rich immune mol 43.1 65 0.0022 29.4 7.7 31 129-159 435-465 (487)
125 3u1c_A Tropomyosin alpha-1 cha 42.5 98 0.0033 22.7 7.4 29 127-155 21-49 (101)
126 1kd8_A GABH AIV, GCN4 acid bas 42.4 56 0.0019 19.8 5.0 28 139-166 4-31 (36)
127 2lw9_A Unconventionnal myosin- 42.3 42 0.0014 21.9 4.3 25 141-165 4-28 (51)
128 2oxj_A Hybrid alpha/beta pepti 42.2 47 0.0016 19.9 4.2 28 139-166 4-31 (34)
129 3azd_A Short alpha-tropomyosin 41.9 12 0.00042 22.9 1.6 29 128-156 3-31 (37)
130 1nkp_B MAX protein, MYC proto- 41.9 86 0.0029 21.8 7.3 28 139-166 50-77 (83)
131 2zqm_A Prefoldin beta subunit 41.3 89 0.003 22.7 6.9 40 124-163 8-47 (117)
132 1gmj_A ATPase inhibitor; coile 41.3 80 0.0027 22.8 6.2 27 136-162 51-77 (84)
133 3ghg_A Fibrinogen alpha chain; 41.3 1.9E+02 0.0064 27.8 10.4 28 136-163 124-151 (562)
134 3he4_B Synzip5; heterodimeric 41.1 63 0.0021 20.0 6.5 23 126-148 7-29 (46)
135 1wlq_A Geminin; coiled-coil; 2 41.0 46 0.0016 24.1 4.8 21 138-158 40-60 (83)
136 2wq1_A General control protein 40.4 58 0.002 19.4 4.8 28 139-166 3-30 (33)
137 1fxk_A Prefoldin; archaeal pro 40.2 99 0.0034 22.1 6.9 40 124-163 3-42 (107)
138 2zvf_A Alanyl-tRNA synthetase; 39.5 46 0.0016 26.1 5.3 27 129-155 32-58 (171)
139 1jcd_A Major outer membrane li 39.1 80 0.0027 20.7 6.2 36 129-164 11-46 (52)
140 1t3j_A Mitofusin 1; coiled coi 39.0 99 0.0034 22.9 6.5 25 139-163 50-74 (96)
141 2lw1_A ABC transporter ATP-bin 38.8 49 0.0017 23.6 4.8 24 133-156 19-42 (89)
142 4etp_A Kinesin-like protein KA 38.6 45 0.0015 30.6 5.7 27 131-157 12-38 (403)
143 3kqg_A Langerin, C-type lectin 38.6 48 0.0016 25.8 5.2 20 137-156 17-36 (182)
144 3ghg_A Fibrinogen alpha chain; 38.2 1.3E+02 0.0043 29.0 8.7 13 94-106 83-95 (562)
145 3he4_A Synzip6; heterodimeric 38.1 79 0.0027 20.3 5.8 27 138-164 26-52 (56)
146 1fxk_C Protein (prefoldin); ar 38.0 1.2E+02 0.004 22.8 7.2 38 131-168 3-40 (133)
147 1ik9_A DNA repair protein XRCC 37.6 1.4E+02 0.0047 25.0 8.2 35 122-156 125-159 (213)
148 1uo4_A General control protein 37.2 56 0.0019 19.6 4.0 27 140-166 5-31 (34)
149 1gd2_E Transcription factor PA 37.1 82 0.0028 21.8 5.6 19 85-103 18-36 (70)
150 2zxx_A Geminin; coiled-coil, c 37.1 56 0.0019 23.4 4.8 10 91-100 26-35 (79)
151 2ve7_A Kinetochore protein HEC 37.0 75 0.0026 28.1 6.7 28 130-157 186-213 (315)
152 2ve7_A Kinetochore protein HEC 36.9 41 0.0014 29.8 5.0 29 136-164 185-213 (315)
153 2er8_A Regulatory protein Leu3 36.5 17 0.00058 24.4 1.9 20 129-148 49-68 (72)
154 3ibp_A Chromosome partition pr 36.4 2.3E+02 0.0078 25.1 10.0 84 131-233 5-89 (302)
155 3c3f_A Alpha/beta peptide with 36.3 70 0.0024 19.2 4.3 28 139-166 4-31 (34)
156 1dh3_A Transcription factor CR 36.2 39 0.0013 22.2 3.6 19 139-157 25-43 (55)
157 4etp_A Kinesin-like protein KA 36.0 68 0.0023 29.3 6.5 36 130-165 18-53 (403)
158 3mlp_A Transcription factor CO 35.8 7.9 0.00027 35.4 0.1 41 92-135 320-360 (402)
159 3gp4_A Transcriptional regulat 35.7 1.2E+02 0.004 23.4 7.0 28 139-166 84-111 (142)
160 3c3g_A Alpha/beta peptide with 35.5 71 0.0024 19.0 4.4 27 140-166 4-30 (33)
161 1pd7_B MAD1; PAH2, SIN3, eukar 35.0 34 0.0012 19.3 2.6 19 118-136 2-20 (26)
162 1szi_A TIP47, mannose-6-phosph 34.5 1E+02 0.0035 26.5 7.0 51 190-244 177-227 (247)
163 3viq_B Mating-type switching p 34.1 58 0.002 23.6 4.5 24 133-156 5-28 (85)
164 2hy6_A General control protein 34.0 77 0.0026 19.0 4.4 28 139-166 4-31 (34)
165 1l8d_A DNA double-strand break 33.5 1.4E+02 0.0046 21.7 7.0 35 122-156 64-98 (112)
166 3mq9_A Bone marrow stromal ant 33.1 56 0.0019 29.8 5.4 15 94-108 409-423 (471)
167 3gpv_A Transcriptional regulat 32.9 1.4E+02 0.0046 23.1 7.0 32 137-168 96-127 (148)
168 3ol1_A Vimentin; structural ge 32.7 1.1E+02 0.0037 23.1 6.2 26 130-155 21-46 (119)
169 1q08_A Zn(II)-responsive regul 32.6 76 0.0026 22.3 5.1 25 132-156 42-66 (99)
170 3q8t_A Beclin-1; autophagy, AT 32.3 1.4E+02 0.0047 21.7 6.5 7 182-188 54-60 (96)
171 4b4t_K 26S protease regulatory 32.2 84 0.0029 29.0 6.5 44 130-173 50-93 (428)
172 3e98_A GAF domain of unknown f 32.1 1.8E+02 0.0063 24.6 8.2 24 203-226 113-136 (252)
173 2wvr_A Geminin; DNA replicatio 31.8 74 0.0025 26.7 5.3 31 136-166 115-145 (209)
174 1am9_A Srebp-1A, protein (ster 31.2 56 0.0019 23.0 4.0 24 138-161 52-75 (82)
175 2wt7_B Transcription factor MA 31.0 74 0.0025 23.2 4.7 38 117-157 46-83 (90)
176 3mud_A DNA repair protein XRCC 30.9 2E+02 0.0068 23.5 7.7 34 123-156 129-162 (175)
177 2w83_C C-JUN-amino-terminal ki 30.8 1.1E+02 0.0036 21.8 5.3 34 133-166 34-67 (77)
178 1m1j_B Fibrinogen beta chain; 30.6 1.6E+02 0.0053 27.8 8.0 13 94-106 98-110 (464)
179 3tnu_A Keratin, type I cytoske 30.4 73 0.0025 24.3 4.9 13 95-107 16-28 (131)
180 3oja_B Anopheles plasmodium-re 30.3 1.7E+02 0.0057 27.2 8.3 12 121-132 504-515 (597)
181 1dip_A Delta-sleep-inducing pe 29.9 58 0.002 23.1 3.7 24 133-156 19-42 (78)
182 4emc_A Monopolin complex subun 29.9 2.1E+02 0.0072 23.7 7.8 38 126-163 24-61 (190)
183 3kin_B Kinesin heavy chain; mo 29.9 1E+02 0.0034 23.2 5.5 12 144-155 97-108 (117)
184 2q6q_A Spindle POLE BODY compo 29.8 87 0.003 21.8 4.6 35 132-166 6-40 (74)
185 1t6f_A Geminin; coiled-coil, c 29.7 97 0.0033 18.8 4.8 27 135-161 6-32 (37)
186 1deb_A APC protein, adenomatou 29.4 1.2E+02 0.0041 19.8 6.4 38 131-168 12-49 (54)
187 3vmx_A Voltage-gated hydrogen 29.4 1.2E+02 0.004 19.7 5.0 25 134-158 16-40 (48)
188 1gk7_A Vimentin; intermediate 29.0 40 0.0014 20.7 2.5 18 128-145 19-36 (39)
189 4e61_A Protein BIM1; EB1-like 28.5 1.7E+02 0.0059 21.9 6.5 21 135-155 10-30 (106)
190 3tnu_B Keratin, type II cytosk 28.4 84 0.0029 23.9 4.9 30 129-158 36-65 (129)
191 1rtm_1 Mannose-binding protein 28.2 62 0.0021 24.3 4.1 23 134-156 2-24 (149)
192 3q0x_A Centriole protein; cent 28.0 2.5E+02 0.0085 23.8 8.2 49 118-166 160-208 (228)
193 2zvf_A Alanyl-tRNA synthetase; 27.9 90 0.0031 24.3 5.2 31 133-163 29-59 (171)
194 2ke4_A CDC42-interacting prote 27.7 1.1E+02 0.0038 22.5 5.2 40 135-174 14-53 (98)
195 3i00_A HIP-I, huntingtin-inter 27.6 1.5E+02 0.0052 22.6 6.2 31 121-151 32-62 (120)
196 1lrz_A FEMA, factor essential 27.5 1.2E+02 0.0042 27.3 6.7 21 129-149 247-267 (426)
197 3a7p_A Autophagy protein 16; c 27.5 2.4E+02 0.008 22.5 8.4 59 89-154 35-93 (152)
198 1g6u_A Domain swapped dimer; d 27.4 1.2E+02 0.004 19.0 6.5 15 141-155 25-39 (48)
199 1r8e_A Multidrug-efflux transp 27.3 1.4E+02 0.0046 24.9 6.5 37 130-166 80-116 (278)
200 2wg5_A General control protein 27.3 74 0.0025 23.6 4.3 25 136-160 7-31 (109)
201 1p9i_A Cortexillin I/GCN4 hybr 27.2 75 0.0026 18.1 3.2 18 138-155 8-25 (31)
202 3efg_A Protein SLYX homolog; x 27.1 76 0.0026 22.4 4.1 28 131-158 30-57 (78)
203 3oja_B Anopheles plasmodium-re 26.7 3.8E+02 0.013 24.7 11.7 16 92-107 484-499 (597)
204 1j1d_C Troponin I, TNI; THIN f 26.7 2.3E+02 0.0077 22.1 10.9 70 86-162 33-105 (133)
205 1nkp_A C-MYC, MYC proto-oncoge 26.6 1.4E+02 0.0047 21.3 5.5 28 129-156 59-86 (88)
206 3l4q_C Phosphatidylinositol 3- 26.2 2.6E+02 0.0089 22.6 7.9 44 129-172 117-160 (170)
207 1deq_A Fibrinogen (alpha chain 26.1 1.2E+02 0.0042 27.8 6.2 14 94-107 65-78 (390)
208 1j1e_C Troponin I, TNI; THIN f 26.1 2.7E+02 0.0093 22.8 10.2 71 85-162 32-105 (180)
209 3u06_A Protein claret segregat 26.0 1.8E+02 0.0063 26.6 7.6 44 125-168 13-56 (412)
210 2ocy_A RAB guanine nucleotide 25.7 1.6E+02 0.0054 23.5 6.2 41 124-164 8-48 (154)
211 3rrk_A V-type ATPase 116 kDa s 25.7 3.3E+02 0.011 23.6 10.7 57 93-158 71-128 (357)
212 1fmh_B General control protein 25.5 1E+02 0.0036 17.8 4.5 22 134-155 6-27 (33)
213 4ath_A MITF, microphthalmia-as 25.1 1.9E+02 0.0064 20.8 5.9 36 123-158 43-78 (83)
214 2zdi_C Prefoldin subunit alpha 25.0 1.6E+02 0.0055 22.7 6.1 35 124-158 96-134 (151)
215 3thf_A Protein shroom; coiled- 24.9 2.9E+02 0.01 22.8 8.3 50 121-170 11-60 (190)
216 3trt_A Vimentin; cytoskeleton, 24.8 1.7E+02 0.0057 19.9 6.5 7 97-103 36-42 (77)
217 3viq_A SWI5-dependent recombin 24.7 1.1E+02 0.0037 23.5 4.8 62 133-202 4-65 (122)
218 3i00_A HIP-I, huntingtin-inter 24.6 2.3E+02 0.008 21.5 7.6 16 129-144 47-62 (120)
219 2zdi_C Prefoldin subunit alpha 24.5 93 0.0032 24.1 4.6 42 127-168 96-137 (151)
220 2xdj_A Uncharacterized protein 24.5 1.9E+02 0.0066 20.5 7.6 43 124-166 22-64 (83)
221 1m1j_C Fibrinogen gamma chain; 24.0 1.7E+02 0.0059 26.9 7.0 39 128-166 83-128 (409)
222 2q6q_A Spindle POLE BODY compo 23.9 1.9E+02 0.0063 20.1 6.2 23 137-159 4-26 (74)
223 3hh0_A Transcriptional regulat 23.7 1.4E+02 0.0048 23.0 5.5 11 186-196 121-131 (146)
224 1lwu_B Fibrinogen beta chain; 23.5 1.5E+02 0.0053 26.3 6.3 16 141-156 33-48 (323)
225 1q08_A Zn(II)-responsive regul 23.2 1.9E+02 0.0066 20.1 6.6 34 136-169 39-72 (99)
226 2gkw_A TNF receptor-associated 23.1 1.4E+02 0.0049 23.8 5.7 27 132-158 3-29 (192)
227 3kin_B Kinesin heavy chain; mo 22.5 1.3E+02 0.0046 22.5 5.0 25 131-155 91-115 (117)
228 3a7p_A Autophagy protein 16; c 22.3 2.6E+02 0.0088 22.3 6.8 34 121-154 95-128 (152)
229 3u06_A Protein claret segregat 22.3 1.6E+02 0.0056 26.9 6.5 12 191-202 129-140 (412)
230 1lwu_C Fibrinogen gamma chain; 22.2 2.5E+02 0.0087 24.9 7.5 25 131-155 28-52 (323)
231 2cly_B ATP synthase D chain, m 21.9 92 0.0031 24.9 4.1 21 88-108 31-51 (160)
232 1ykh_B RNA polymerase II holoe 21.8 2E+02 0.007 22.0 6.0 48 97-156 72-119 (132)
233 1p3q_Q VPS9P, vacuolar protein 21.7 1E+02 0.0035 20.3 3.6 24 86-109 4-27 (54)
234 1fzc_B Fibrin; blood coagulati 21.6 73 0.0025 28.5 3.8 30 127-156 28-57 (328)
235 1lwu_B Fibrinogen beta chain; 21.5 78 0.0027 28.3 4.0 26 131-156 30-55 (323)
236 2l5g_B Putative uncharacterize 21.5 1.6E+02 0.0055 18.5 6.0 26 131-156 11-36 (42)
237 1ohu_A Apoptosis regulator CED 21.3 1.8E+02 0.0063 23.4 5.9 30 160-198 62-91 (175)
238 1ik9_A DNA repair protein XRCC 21.3 2.8E+02 0.0096 23.0 7.2 32 128-159 124-155 (213)
239 3mud_A DNA repair protein XRCC 21.3 2.7E+02 0.0092 22.7 6.8 45 119-166 121-165 (175)
240 2lw1_A ABC transporter ATP-bin 21.3 40 0.0014 24.1 1.7 29 129-157 56-84 (89)
241 2xzr_A Immunoglobulin-binding 21.2 2.6E+02 0.0088 20.8 7.4 35 123-157 56-90 (114)
242 3ni0_A Bone marrow stromal ant 21.2 2.5E+02 0.0087 20.7 6.4 18 142-159 66-83 (99)
243 1lwu_C Fibrinogen gamma chain; 21.1 1.7E+02 0.0056 26.2 6.0 30 135-164 25-54 (323)
244 1dip_A Delta-sleep-inducing pe 21.0 56 0.0019 23.1 2.3 32 135-166 14-45 (78)
245 2ocy_A RAB guanine nucleotide 21.0 3.2E+02 0.011 21.7 7.3 42 122-163 94-135 (154)
246 3he4_B Synzip5; heterodimeric 21.0 1.6E+02 0.0054 18.2 6.5 39 131-169 5-43 (46)
247 2dfs_A Myosin-5A; myosin-V, in 20.9 1.9E+02 0.0064 30.0 7.1 34 124-157 965-998 (1080)
248 3a2a_A Voltage-gated hydrogen 20.8 1.9E+02 0.0066 19.2 5.0 21 130-150 26-46 (58)
249 2eqb_B RAB guanine nucleotide 20.8 2.6E+02 0.0088 20.6 7.7 32 124-155 7-38 (97)
250 1yke_B RNA polymerase II holoe 20.7 2.1E+02 0.0073 22.5 6.0 48 97-156 72-119 (151)
251 1q06_A Transcriptional regulat 20.5 1.4E+02 0.0047 22.7 4.8 26 141-166 84-109 (135)
252 3a7o_A Autophagy protein 16; c 20.5 2.3E+02 0.0077 19.8 5.8 21 130-150 19-39 (75)
253 1aq5_A Matrilin-1, CMP, cartil 20.5 1.8E+02 0.0061 18.7 4.8 29 123-151 17-45 (47)
254 1zke_A Hypothetical protein HP 20.5 1.1E+02 0.0036 21.9 3.6 21 139-159 55-75 (83)
255 2yko_A LINE-1 ORF1P; RNA-bindi 20.3 3.2E+02 0.011 23.2 7.4 74 126-199 10-85 (233)
256 1a93_A Coiled coil, LZ, MYC pr 20.3 1.5E+02 0.0052 17.7 4.2 26 133-158 4-29 (34)
257 1l8d_A DNA double-strand break 20.1 2.5E+02 0.0085 20.2 10.4 41 127-167 62-102 (112)
No 1
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.81 E-value=2e-19 Score=135.66 Aligned_cols=81 Identities=27% Similarity=0.425 Sum_probs=74.1
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 77 ERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 77 ~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
..+|..||.+||+||+.||++|..|+.+||.+.. +.|+||++||.+||+||+.|+.++..+..+++.|+++.+.|+
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~----~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~ 79 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELEN----NEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLK 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTT----CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999853 459999999999999999999999999999999999999997
Q ss_pred HHHHH
Q psy14439 157 IMQAN 161 (245)
Q Consensus 157 ~~~~~ 161 (245)
..+..
T Consensus 80 ~rl~~ 84 (88)
T 1nkp_A 80 HKLEQ 84 (88)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.81 E-value=1.2e-19 Score=135.16 Aligned_cols=76 Identities=33% Similarity=0.587 Sum_probs=70.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 79 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 79 rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+|..||.+||+||+.||.+|++|+.+||.+. +.|++|++||.+||+||+.|+++++.|+++++.|+++++.|+..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-----~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-----GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999874 45899999999999999999999999999999999999999654
Q ss_pred H
Q psy14439 159 Q 159 (245)
Q Consensus 159 ~ 159 (245)
.
T Consensus 77 l 77 (83)
T 1nkp_B 77 V 77 (83)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.80 E-value=2.1e-19 Score=133.80 Aligned_cols=75 Identities=37% Similarity=0.552 Sum_probs=69.9
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 76 ~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
+..+|.+|+.+||+||++||++|.+|+.+||.+ +.|++|++||.+||+||++|+.+++.|++++..|+.+++..
T Consensus 3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~------~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGT------EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999985 35899999999999999999999999999999999998876
Q ss_pred H
Q psy14439 156 R 156 (245)
Q Consensus 156 ~ 156 (245)
+
T Consensus 77 ~ 77 (82)
T 1am9_A 77 K 77 (82)
T ss_dssp H
T ss_pred h
Confidence 4
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.80 E-value=2.9e-19 Score=132.53 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=70.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 80 REAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 80 R~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
|..||.+||+||+.||.+|..|+++||.+.. +.|++|+.||.+|++||+.|+++..++.++++.|+.+++.|+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~----~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPD----SSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSS----SCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999854 45899999999999999999999999999999999999999744
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.79 E-value=1.7e-19 Score=142.95 Aligned_cols=94 Identities=21% Similarity=0.412 Sum_probs=53.0
Q ss_pred cchhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q psy14439 73 LNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEE---RNGLR 149 (245)
Q Consensus 73 ~~~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e---~~~L~ 149 (245)
..+...+|..|+.+||+||++||++|.+|+.+||.|... ..|++|++||.+||+||++|+++++.|+++ ..+|+
T Consensus 21 ~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~---~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~ 97 (118)
T 4ati_A 21 LAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDP---DMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLE 97 (118)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHSCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999998642 458999999999999999999999999865 44566
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy14439 150 KEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 150 ~ei~~L~~~~~~~e~~~~~~ 169 (245)
.+...|..-+..+|..+.+|
T Consensus 98 ~~n~~L~~riqeLE~~a~~~ 117 (118)
T 4ati_A 98 HANRHLLLRVQELEMQARAH 117 (118)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 66666665556666655554
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.78 E-value=2e-19 Score=133.20 Aligned_cols=72 Identities=33% Similarity=0.627 Sum_probs=66.6
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 75 YKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKE 151 (245)
Q Consensus 75 ~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~e 151 (245)
....+|..||.+||+||..||.+|++|+.+||.+. +.|++|++||.+||+||+.|++++++|+++++.|+++
T Consensus 8 ~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-----~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 8 SDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-----GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT-----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC-----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34789999999999999999999999999999874 3589999999999999999999999999999999875
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.71 E-value=9.6e-19 Score=124.11 Aligned_cols=60 Identities=32% Similarity=0.474 Sum_probs=53.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy14439 79 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQK 138 (245)
Q Consensus 79 rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~ 138 (245)
||.+|+.+||+||++||.+|.+|+.|||.+...+.++.+++||+||++||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999988654434679999999999999999998764
No 8
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=114.20 Aligned_cols=60 Identities=32% Similarity=0.450 Sum_probs=54.0
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKL 141 (245)
Q Consensus 76 ~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l 141 (245)
...+|.+|+.+||+||++||.+|.+|+.|||.. ..|++|++||++||+||+.||++..=|
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~------~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN------ARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC------CSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC------CCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 478999999999999999999999999999963 458999999999999999999876543
No 9
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.65 E-value=9e-18 Score=119.51 Aligned_cols=61 Identities=34% Similarity=0.506 Sum_probs=53.7
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy14439 77 ERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQK 138 (245)
Q Consensus 77 ~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~ 138 (245)
..+|.+|+.+||+||+.||.+|.+|+.|||.+.... ...|++|++||++||+||+.|++++
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~-~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMES-TKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCS-STTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCccccc-ccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999986431 2358999999999999999999865
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.62 E-value=9.2e-17 Score=117.89 Aligned_cols=62 Identities=26% Similarity=0.355 Sum_probs=49.0
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 77 ERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKL-SKATVLQKSIDYIQFLVQQKKKLE 142 (245)
Q Consensus 77 ~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~-sKa~IL~kAi~YI~~Lq~~~~~l~ 142 (245)
..||.+||.+||+||..||++|.+|+.+||.+.. +.|. +|++||++||+||+.|++++++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~----~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLK----SDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCC----ccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999996433 2355 899999999999999999887653
No 11
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.60 E-value=5.1e-16 Score=113.06 Aligned_cols=59 Identities=39% Similarity=0.554 Sum_probs=53.0
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy14439 75 YKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQ 136 (245)
Q Consensus 75 ~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~ 136 (245)
+..++|.+|+.+||+||++||.+|++|+.|||.|.. ...|++||+||+.||+||+.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~---~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNA---MSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHT---CSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccccc---ccccccHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999999999999998753 34699999999999999999863
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.51 E-value=5.1e-14 Score=101.14 Aligned_cols=58 Identities=24% Similarity=0.411 Sum_probs=52.5
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q psy14439 75 YKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQ 137 (245)
Q Consensus 75 ~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~ 137 (245)
....+|..||..||+|+..||++|+.|+.+||... +.|+||+.||+.||+||..|++.
T Consensus 8 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-----~~KlSKi~tLr~Ai~YI~~L~~~ 65 (68)
T 1mdy_A 8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-----NQRLPKVEILRNAIRYIEGLQAL 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-----TSCCCHHHHHHHHHHHHHHHHHT
T ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-----CCCCCHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999753 46999999999999999999864
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.49 E-value=5.5e-14 Score=98.61 Aligned_cols=56 Identities=29% Similarity=0.389 Sum_probs=51.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy14439 79 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQK 138 (245)
Q Consensus 79 rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~ 138 (245)
||..||..||+|+..||.+|+.|+.+||.... +.|+||+.||..|++||..|++..
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~----~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSK----TQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCS----SSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCC----cCcCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999998753 569999999999999999998754
No 14
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.47 E-value=4.5e-13 Score=99.15 Aligned_cols=77 Identities=21% Similarity=0.358 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy14439 91 RDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGL---RKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 91 R~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L---~~ei~~L~~~~~~~e~~~~ 167 (245)
|++||++|.+|..|||.+.+ ...|.+|++||.+|||||++||++++++.++..++ +.....|-.-+..+|...+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~---~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~qa~ 80 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSND---PDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQAR 80 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCC---TTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCC---cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 89999999999999999854 35699999999999999999999999988777654 3344445444556666666
Q ss_pred hcC
Q psy14439 168 AQQ 170 (245)
Q Consensus 168 ~~~ 170 (245)
+|+
T Consensus 81 ~hg 83 (83)
T 4ath_A 81 AHG 83 (83)
T ss_dssp HC-
T ss_pred HcC
Confidence 653
No 15
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.11 E-value=2.3e-11 Score=86.73 Aligned_cols=47 Identities=34% Similarity=0.507 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy14439 86 AEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQ 136 (245)
Q Consensus 86 ~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~ 136 (245)
.||+|+..||++|+.|+.+||.... ..|+||..||+.||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~----~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPR----GTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCT----TCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC----CCCccHHHHHHHHHHHHHHHHc
Confidence 3899999999999999999999753 5699999999999999999974
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.06 E-value=6.9e-11 Score=109.52 Aligned_cols=61 Identities=38% Similarity=0.529 Sum_probs=51.6
Q ss_pred cchhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy14439 73 LNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQ 136 (245)
Q Consensus 73 ~~~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~ 136 (245)
..+...+|.+|+.+||+||++||..|.+|+.|||.+.. ...|++|++||+.||+||+.|+.
T Consensus 7 ~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~---~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 7 QGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNA---MSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH---CSSCCCHHHHHHHHHHHHHHHHC
T ss_pred cchhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCc---cccccCHHHHHHHHHHHHHHhhc
Confidence 44557889999999999999999999999999997643 25699999999999999999874
No 17
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.02 E-value=2.2e-10 Score=104.92 Aligned_cols=57 Identities=32% Similarity=0.487 Sum_probs=41.9
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q psy14439 75 YKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQ 137 (245)
Q Consensus 75 ~~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~ 137 (245)
++..+|..|+.+||+||++||..|.+|+.|||. ...|++|++||+.||+||+.|+..
T Consensus 8 ~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~------~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 8 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG------NARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCCS------SSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCC------CCCCcCHHHHHHHHHHHHHHHHhh
Confidence 457889999999999999999999999999993 245999999999999999998753
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.75 E-value=1.7e-08 Score=76.82 Aligned_cols=49 Identities=31% Similarity=0.372 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy14439 87 EQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKK 139 (245)
Q Consensus 87 ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~ 139 (245)
|+.|-..||++|+.|+.+||... ...|+||..||+.||+||..|++-.+
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p----~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIP----QNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSC----SSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC----CCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 57788999999999999999974 35799999999999999999987554
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=95.89 E-value=0.038 Score=38.26 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
++-.+||..|+.++..|+.+...|+.+|..|+..+..+..++.+|
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~H 63 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAH 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456689999999999999999999999999999988888888664
No 20
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=94.62 E-value=0.058 Score=37.13 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
+-.+||..|+.++..|+.+...|+.+|..|+.....+.+++.+
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~ 61 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMN 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888888888888888777666666544
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=94.47 E-value=0.15 Score=34.88 Aligned_cols=42 Identities=26% Similarity=0.284 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
++--+|+..|+.++..|+.+...|+.+|..|+.....+.+++
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999999988877777665
No 22
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=92.94 E-value=0.086 Score=29.91 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|+.|++.+.+|+.|+..|+-||.+|+
T Consensus 2 irrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 56777777777777777777777663
No 23
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=91.94 E-value=1.9 Score=31.67 Aligned_cols=55 Identities=27% Similarity=0.313 Sum_probs=32.4
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 76 ~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
...||...|.|-++=|+.=+..-.++. .-+..|.+++..|..+++.|+.|+..|
T Consensus 16 Y~~rR~rNN~AarrSR~krk~r~~e~~--------------------------~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQ--------------------------HKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888887765554433321 122445666666666666666666665
Q ss_pred H
Q psy14439 156 R 156 (245)
Q Consensus 156 ~ 156 (245)
+
T Consensus 70 r 70 (87)
T 1hjb_A 70 R 70 (87)
T ss_dssp H
T ss_pred H
Confidence 4
No 24
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=91.66 E-value=0.82 Score=31.44 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
-+++..|+.+.+.|+.++..|+.+|..|+..+..+.+++
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555544444443
No 25
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=91.45 E-value=0.36 Score=32.33 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.|+.++..|+.+++.|++++++|+
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.23 E-value=1.1 Score=32.68 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
++.||+-|.-||.++++|+++...|..+.++++.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999888887777766443
No 27
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=90.13 E-value=1.3 Score=32.36 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
-|..|.+=.+.|++++..+++++..|+++.+.|+......+.
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~ 81 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQY 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777778889999999999999999999999866555443
No 28
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=89.99 E-value=0.71 Score=27.06 Aligned_cols=26 Identities=35% Similarity=0.416 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|..|+++...|+.|+..|+-||.+|+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666664
No 29
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=89.65 E-value=3.4 Score=29.64 Aligned_cols=55 Identities=27% Similarity=0.313 Sum_probs=35.5
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 76 ~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
...||...|.|-++=|++=+....++. .-+..|..++..|..++..|+.|+..|
T Consensus 16 Y~~rR~rNN~AakrSR~krk~r~~e~~--------------------------~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQ--------------------------HKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888888876555544432 123456777777777777777777766
Q ss_pred H
Q psy14439 156 R 156 (245)
Q Consensus 156 ~ 156 (245)
+
T Consensus 70 r 70 (78)
T 1gu4_A 70 R 70 (78)
T ss_dssp H
T ss_pred H
Confidence 5
No 30
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=89.38 E-value=0.35 Score=32.34 Aligned_cols=41 Identities=10% Similarity=0.188 Sum_probs=25.0
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 126 KSIDYIQFLV-------QQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 126 kAi~YI~~Lq-------~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.|++||++-- .+...|+.|+..|+.++++|+.....+...+
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788997653 5788999999999999999987766665544
No 31
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=89.33 E-value=0.4 Score=26.92 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
|+-+|+.++.+|+-|+..|+.|+..|
T Consensus 1 yvyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHHHhcc
Confidence 55678888888888888888888766
No 32
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=89.29 E-value=1.8 Score=27.45 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
.|+..|..+.+.|+..+..|+..|.-|..+..=+.|+
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4888999999999999999999998886443333333
No 33
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=88.85 E-value=1.1 Score=26.32 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 137 QKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 137 ~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
+...|++|+..|++||.+|+-++..+.|
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5677888888999999888876665543
No 34
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=88.20 E-value=0.84 Score=30.59 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.||..|..++..|+.++..|+.++..|.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999885
No 35
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=87.24 E-value=1.4 Score=31.02 Aligned_cols=30 Identities=27% Similarity=0.158 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
.||+.|..++..|+.....|..|++.|+..
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544444444444444433
No 36
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=86.51 E-value=1.6 Score=30.08 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
+-.+||..|+.++..|+.+...|+.+++.|+.
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888888888863
No 37
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=86.38 E-value=2.9 Score=30.45 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 122 TVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 122 ~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.-|..|.+=-+.|++++..+++++..|+++.+.|+......+.+.
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la 75 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMA 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888999999999999999999999987665555443
No 38
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.88 E-value=1.5 Score=31.62 Aligned_cols=44 Identities=18% Similarity=0.047 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
++-.-...++.....|+.+...|+.+|+.|+.+...+..++.++
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34556678999999999999999999999998887777665443
No 39
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=85.71 E-value=6.5 Score=26.71 Aligned_cols=31 Identities=26% Similarity=0.218 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
+-+..|..++..|..++..|+.|+..|+.+.
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345788999999999999999999998654
No 40
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=85.52 E-value=1.9 Score=29.53 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=38.4
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 77 ERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 77 ~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
..+|...+.|-++.|..=+....+|.. -++.|..++..|..++..|+.|+..|+
T Consensus 4 ~rKr~rNr~AA~R~R~KKk~~~~~le~--------------------------~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 4 LKKMEQNKTAATRYRQKKRAEQEALTG--------------------------ECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666665555555542 346688999999999999999999988
Q ss_pred HHH
Q psy14439 157 IMQ 159 (245)
Q Consensus 157 ~~~ 159 (245)
...
T Consensus 58 ~ll 60 (63)
T 1ci6_A 58 DLI 60 (63)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 41
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=85.32 E-value=2.7 Score=35.48 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
-.-|..|.+-.+.|+.++..+++++..|++|.+.|+......+.++
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la 152 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMA 152 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999999987665555443
No 42
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=85.08 E-value=0.8 Score=25.91 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
.+|+.+..+|++||.+|+-++..+
T Consensus 3 rrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHh
Confidence 467888999999999997555444
No 43
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=84.85 E-value=2.2 Score=26.07 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
+.+|..++++|..+...|+.||..|+.....+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 45788888888888888888888887665544
No 44
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=84.05 E-value=1.6 Score=34.75 Aligned_cols=41 Identities=24% Similarity=0.466 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHH
Q psy14439 92 DAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLV 135 (245)
Q Consensus 92 ~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq 135 (245)
-.|.-+|..|+++||--..+ ..++-|-.||++|.|+++.|-
T Consensus 94 PtId~gfqrl~k~~pr~pgd---pe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGD---PERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTC---CSSCCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCC---hhhhhHHHHHHHHHHHHHHHh
Confidence 35889999999999986543 357999999999999998773
No 45
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=83.09 E-value=4.4 Score=24.77 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
+.+|...+++|..+...|+.||..|+....
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 567888888888888888888888876544
No 46
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=82.04 E-value=4.3 Score=29.27 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 122 TVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 122 ~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.-|..|.+=-+.|+.++..+++++..|++|...|+.+....+.++
T Consensus 27 ~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~la 71 (79)
T 2zxx_A 27 KALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMA 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777788999999999999999999888877666555544
No 47
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=81.14 E-value=6.5 Score=26.39 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPL 173 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~ 173 (245)
++=.-+.+|++.+..|-.+++.|+....+-+.++..+..++++|+.-+
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHgl~~ 55 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHGLLG 55 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 344567788898999999999988888888888888889999987653
No 48
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=80.81 E-value=8.2 Score=25.16 Aligned_cols=42 Identities=14% Similarity=0.018 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQT 171 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~ 171 (245)
-|.+|++-+..|-.++..|+.....++.++..+..++++++.
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHgl 46 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNGL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcCC
Confidence 456677777777777777777777777777777888888875
No 49
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.67 E-value=2.2 Score=29.00 Aligned_cols=56 Identities=27% Similarity=0.328 Sum_probs=37.0
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 77 ERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 77 ~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
++||.....+-++-|..=+..+.+|.. -+..|..++..|..++..|+.|+..|+
T Consensus 3 errr~rNr~AA~k~R~rKk~~~~~Le~--------------------------~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 3 ERKRMRNRIAASKSRKRKLERIARLEE--------------------------KVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666655555555543 234578888889999999999888876
Q ss_pred HH
Q psy14439 157 IM 158 (245)
Q Consensus 157 ~~ 158 (245)
..
T Consensus 57 ~~ 58 (62)
T 1jnm_A 57 QK 58 (62)
T ss_dssp --
T ss_pred HH
Confidence 54
No 50
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=79.37 E-value=2.9 Score=30.67 Aligned_cols=46 Identities=17% Similarity=0.050 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQ 170 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~ 170 (245)
+++-.-...++.+...|+.+...|+.+|+.|+.+...+..++.+..
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3445556789999999999999999999999999999998887643
No 51
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.74 E-value=7.8 Score=26.02 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+..|..++..|..++..|+.|+..|+..
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999888754
No 52
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=77.52 E-value=3.6 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
.+|..++++|-.+...|+.||..|+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45777777888888888888877753
No 53
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=76.81 E-value=6.8 Score=23.62 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+.+|..++++|-.+...|+.||..|+..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4567778888888888888888877643
No 54
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=74.74 E-value=11 Score=24.12 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
..|+..+-+|+..-+.|++-|..|+..+..++..+
T Consensus 13 arlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 13 ARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444
No 55
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=74.64 E-value=7.8 Score=23.21 Aligned_cols=28 Identities=0% Similarity=0.197 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+.+|..++++|-.+...|+.||..|+..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3567777777777888888888777643
No 56
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=73.96 E-value=3.4 Score=23.31 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.|.-++..|+.++..|++.|..|+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 355566677777777777666653
No 57
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=73.59 E-value=17 Score=24.23 Aligned_cols=41 Identities=12% Similarity=0.298 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
+|-+=.|+.++..|+.+..+|++-+++-......+|.+++.
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk 49 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRK 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666667666666666665566666666543
No 58
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=73.26 E-value=9.7 Score=22.80 Aligned_cols=27 Identities=7% Similarity=-0.025 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
+.+|..+++++-.++..|+.||..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356777777777777777777777753
No 59
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=72.77 E-value=10 Score=22.87 Aligned_cols=28 Identities=4% Similarity=0.047 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+.+|..++++|-.+...|+.||..|+..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4567777777777888888888777643
No 60
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.06 E-value=16 Score=23.25 Aligned_cols=41 Identities=27% Similarity=0.313 Sum_probs=24.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 122 TVLQKSIDYIQ----FLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 122 ~IL~kAi~YI~----~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
.-|.|-|..++ +|.+..+.|+.-+..|+.||..|+......
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455554444 255555667777777777777777665443
No 61
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.03 E-value=34 Score=26.84 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcc--CCCCCCCCCCCCCchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 92 DAIKKGYDSLQDL--VPTCHQTDSSGYKLSKATVLQ---KSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 92 ~~In~~f~~L~~l--VP~~~~~~~~~~K~sKa~IL~---kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
..++..+.+++.. -|.+. ..+..||. -|-+|. .++++...|+.+++.+.+|+..|+..
T Consensus 35 ~~vd~km~ei~~~~~~~~l~--------~~r~aVLaALNiadEl~-k~~~~~~~L~~~l~~~~kE~~~lK~e 97 (138)
T 3hnw_A 35 SYINNKITEFNKEESYRRMS--------AELRTDMMYLNIADDYF-KAKKMADSLSLDIENKDKEIYDLKHE 97 (138)
T ss_dssp HHHHHHHHHHTTCHHHHTSC--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCC--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999877 77763 35666665 233443 35556666666666655555555443
No 62
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.91 E-value=8.2 Score=27.30 Aligned_cols=29 Identities=17% Similarity=0.081 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
..+=|+.....++.++.++.+...+|..|
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444333
No 63
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=67.20 E-value=3.7 Score=27.68 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEV 152 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei 152 (245)
.||..|++++..|+..+..|+..+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888887777777777776654
No 64
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=67.05 E-value=19 Score=21.99 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
-=.+|+.+..+-++++.+|++|.++|.
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345677777777777777777777763
No 65
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.91 E-value=14 Score=27.68 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
+-+..|+++++.|+.|..+|+++++.|+...
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777775443
No 66
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=66.10 E-value=5.5 Score=30.06 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+++|+.+...+++++..+++|++.|+
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777777777777773
No 67
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=65.52 E-value=17 Score=21.12 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
..|.+++.+.+.+.-+|++|+..|+
T Consensus 4 aqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4566777777777777777777664
No 68
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=65.50 E-value=12 Score=22.59 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+.+|...+++|-.+...|+.||..|+..
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3567777777777777777777777543
No 69
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=65.32 E-value=34 Score=26.37 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
|+.|+.+++.|.++++....|++.|+....
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 666777777777666666666666664433
No 70
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=65.27 E-value=22 Score=25.12 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
|..||...++..+++.+....|++|+..+..++..+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665555555555555555554444444433
No 71
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=65.03 E-value=6.1 Score=26.39 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+|+..+-.+...+.+++..|+.++..|+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555553
No 72
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=64.63 E-value=11 Score=22.67 Aligned_cols=28 Identities=4% Similarity=0.213 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+.+|..++++|-.+...|+.||..|+..
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4567777777778888888888777643
No 73
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=64.54 E-value=11 Score=22.66 Aligned_cols=27 Identities=4% Similarity=0.183 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
+.+|..++++|-.+...|+.||..|+.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356777777777778888888877753
No 74
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=64.10 E-value=23 Score=25.89 Aligned_cols=20 Identities=45% Similarity=0.502 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGL 148 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L 148 (245)
+-+++|.++++.|+.++..+
T Consensus 23 dKVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555444433
No 75
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=63.99 E-value=8.9 Score=23.22 Aligned_cols=23 Identities=9% Similarity=0.313 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 134 LVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+++++...+.+++.|+++..-|+
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le 27 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLE 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHH
Confidence 34555555555555555555553
No 76
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=62.34 E-value=18 Score=21.14 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKE 151 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~e 151 (245)
+.|+.-+++|++.+.+|+.-
T Consensus 9 r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 9 RNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 77
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=61.88 E-value=25 Score=21.62 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQFLVQQKKKLEEERNGL 148 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L 148 (245)
+.-+..|..+-+-|..|+.+...|++|..+|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888877777777776655
No 78
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=61.84 E-value=11 Score=22.87 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
...|+++..++.++..|+.+|-.|
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhc
Confidence 345666666666666666666554
No 79
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=61.25 E-value=16 Score=27.23 Aligned_cols=35 Identities=23% Similarity=0.146 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
.+.|++++.+++.+++...+..+.|..|+..|.+.
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~n 51 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKT 51 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35566666666666666666666776666666644
No 80
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=61.10 E-value=25 Score=25.86 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=31.5
Q ss_pred HHHHHHHHhccCCCC--CCCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 94 IKKGYDSLQDLVPTC--HQTDS-SGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 94 In~~f~~L~~lVP~~--~~~~~-~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+....++|..+-+.. ..... -=.+.++..++..--+-+..|....+.++.++..++.++..|+
T Consensus 39 ~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 39 AKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777665432 11000 0013455555554445555555555555555555555555554
No 81
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=60.85 E-value=40 Score=24.71 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
+-+..|+.++..|..+++.|++|...+..++..|.
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555444443333
No 82
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.59 E-value=34 Score=24.64 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.+|..+++.+-+.+.-|+-||++|+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELK 33 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELK 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333333333
No 83
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=60.42 E-value=21 Score=32.67 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 89 KRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSI-DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 89 kRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi-~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
..+..|...|+++++=+|.+.. +|..-..+| .....|..++.+.+.++++|+.||..|+..+.+.+..++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEA---------QAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHH---------HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888999888887532 233333222 334456666666666777777777777766666555543
No 84
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=60.32 E-value=13 Score=22.25 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 140 KLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 140 ~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+|+++++.|-.+...|+.....+..++
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 466666666666666666666655554
No 85
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=59.89 E-value=10 Score=25.29 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 122 TVLQKSIDYIQFLVQQKKKLEEERNGLRKEV 152 (245)
Q Consensus 122 ~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei 152 (245)
..|...++-+..|.+++..|++++..|++++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3678888888889999999999998887754
No 86
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.80 E-value=21 Score=22.56 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
.-.+.|+..+.+|++++.-|+.|-.-|+....
T Consensus 10 ~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 34577888899999999999888888876654
No 87
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=58.93 E-value=52 Score=26.82 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCCC
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVA--------LRIMQANYDIMVKAQQTP 172 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~--------L~~~~~~~e~~~~~~~~~ 172 (245)
.-+..+..++.+|.+.+..|+++... |+..+..|++-+.+|+..
T Consensus 111 ~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H~~T 162 (168)
T 3o0z_A 111 HNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVT 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666777777665433 566778899999999865
No 88
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=58.71 E-value=12 Score=32.66 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
.....+..|..++.+|.++++.+++|+..|+.+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666666666666666533
No 89
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=57.85 E-value=20 Score=29.82 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
|..|---|..|+.++..|.++++....||++|+...+.++..+
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444445677777776666666666666666555444444333
No 90
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=57.57 E-value=29 Score=28.73 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVV 153 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~ 153 (245)
++.-+++-|..|+.++.+|+++.++|+.|-.
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555543
No 91
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=57.50 E-value=15 Score=28.72 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
.+..|+++.+++++++++|++.++.|+..+..|+..+..
T Consensus 96 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 96 RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566666777777777777777777666666665544
No 92
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=55.17 E-value=28 Score=22.06 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
..|-+..|+...+.+++++..|+..++.|...
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999988543
No 93
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=54.75 E-value=32 Score=20.69 Aligned_cols=27 Identities=4% Similarity=0.073 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
+.+|..+++++-.+...|+.|+..|+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666777777777777777776654
No 94
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=54.52 E-value=38 Score=27.31 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
.+..|+.|+.++.++.+++++-++++++|......++.++.
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~ 43 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQ 43 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999998888888877777777666655555443
No 95
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=54.20 E-value=17 Score=31.60 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLG 174 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~ 174 (245)
-++.|+.++..+..+++.|..++.+++..+..+...+..-+.||-
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL 99 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPS 99 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 456666667777777777777777776666666666666666663
No 96
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=54.18 E-value=42 Score=24.12 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+-.|+.+...|+.|+..|+-+|+.+.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~ 47 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQ 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34466666666666666666666654
No 97
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=52.82 E-value=34 Score=28.31 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=35.2
Q ss_pred CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 117 KLSKAT-VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 117 K~sKa~-IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
++.|+. -.+-..++|.++-..+..|++++.+|+++.+.|+.....+.
T Consensus 132 ~L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 132 NLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp ECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 33334469999999999999999999999999986655443
No 98
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.60 E-value=46 Score=24.87 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 136 QQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
.+...+.++++.|+.|.+.|+..+..++..+-..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666553
No 99
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.36 E-value=58 Score=22.85 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
+..-++.+..+++.|++++..|+.+++.-+..+.+..
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~ 41 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFR 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777777776654444443
No 100
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=51.79 E-value=48 Score=21.77 Aligned_cols=28 Identities=7% Similarity=0.005 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
|..|-.+++.|..++.+|..+|..|+..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 101
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.78 E-value=37 Score=24.44 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 135 VQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
+...+.|-.|+..|+-.|.+++..+.+|+.-+++.
T Consensus 18 ~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsT 52 (81)
T 3qh9_A 18 QRKAEELLQELRHLKIKVEELENERNQYEWKLKAT 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445566677777777777777777777766654
No 102
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=51.42 E-value=24 Score=23.95 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVV 153 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~ 153 (245)
..|..++..|..++..|+.++.
T Consensus 40 ~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 40 EELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3356777777777777776653
No 103
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=51.08 E-value=55 Score=24.43 Aligned_cols=41 Identities=27% Similarity=0.499 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQFLVQQKKKLEEERNGLRK-------EVVALRIMQANY 162 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~-------ei~~L~~~~~~~ 162 (245)
|||..+++ +||. |......++++..+|+. .|.+|...+..+
T Consensus 30 mSKqELIq---EYl~-LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL 77 (104)
T 3s9g_A 30 MSKQELIK---EYLE-LEKSLSRMEDENNRLRLESKRLDARVRELELELDRL 77 (104)
T ss_dssp SCHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
No 104
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=50.71 E-value=69 Score=23.26 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 92 DAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 92 ~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
..|+..+.+++.-.|.+. ..+..|| -|++....|.+..++.......+++++..|...
T Consensus 33 ~~vd~~~~~i~~~~~~~~--------~~r~~vm-aALnladel~~~~~~~~~~~~~~~~~i~~L~~~ 90 (104)
T 1t3u_A 33 RYLDGKMREIRSSGKVIG--------ADRVAVM-AALNITHDLLHRKERLDQESSSTRERVRELLDR 90 (104)
T ss_dssp HHHHHHHHHHHTTTCSCS--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999888753 3454444 355555555555555555666666666666544
No 105
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=50.38 E-value=51 Score=23.74 Aligned_cols=64 Identities=11% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccCCCC--CCCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 93 AIKKGYDSLQDLVPTC--HQTDS-SGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 93 ~In~~f~~L~~lVP~~--~~~~~-~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.+....++|..+-+.. ..... .=.+.++..++..--+.+..+..+.+.++.++..++.++..|+
T Consensus 33 e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 33 ETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777665431 11000 0013445555544444444444555555555555555555443
No 106
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=50.18 E-value=26 Score=20.45 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
.|.++...|+.-++.|++.++.|+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777753
No 107
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.26 E-value=34 Score=26.14 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCC
Q psy14439 95 KKGYDSLQDLVPT 107 (245)
Q Consensus 95 n~~f~~L~~lVP~ 107 (245)
+.+|.+|+..+..
T Consensus 14 ~~K~eel~~~~~~ 26 (129)
T 3tnu_B 14 QTKYEELQQTAGR 26 (129)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 4456777766654
No 108
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=48.96 E-value=36 Score=19.49 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.|...-..++.+++.|++.+++|+
T Consensus 5 alekkcaalesklqalekkleale 28 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777764
No 109
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=48.87 E-value=41 Score=25.43 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=5.2
Q ss_pred hHHhhHHHhhh
Q psy14439 189 FQSIMDELFST 199 (245)
Q Consensus 189 f~~i~~~lf~s 199 (245)
...|.+=|+.+
T Consensus 89 ~~kIq~ILYaT 99 (106)
T 4e61_A 89 VKKVESILYAT 99 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 34555555543
No 110
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.55 E-value=47 Score=25.52 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+-|+.|.++.+...+++++|+++.+.|.
T Consensus 78 gEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 78 GEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 4455555555555555555555555554
No 111
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=48.42 E-value=61 Score=21.98 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
=.-|+.|-+-+..|.+|+..|++++..|..+..++
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 35688898999999999999999999997665443
No 112
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=47.51 E-value=28 Score=28.78 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKE 151 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~e 151 (245)
++.-+++-|..|+.++..|++|+++|.++
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456666777777777777777777655
No 113
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=47.28 E-value=40 Score=24.37 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14439 141 LEEERNGLRKEVVALRIM 158 (245)
Q Consensus 141 l~~e~~~L~~ei~~L~~~ 158 (245)
|.+++..|+.|+..|+.+
T Consensus 51 Lh~~ie~l~eEi~~lk~e 68 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKE 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444333
No 114
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.28 E-value=44 Score=24.35 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
-.||..|+.++..+..+..+|.-|+..|.....
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777777777766654433
No 115
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=47.06 E-value=51 Score=24.94 Aligned_cols=39 Identities=10% Similarity=0.262 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
=.+.++.|+++.+.+..++..|+..+.+++..+..++.+
T Consensus 6 l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l 44 (133)
T 1fxk_C 6 IVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDI 44 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666666666666655555544
No 116
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=47.01 E-value=78 Score=23.09 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
|++-...++.+.+.++.+...+..+|.+|+.-+..+
T Consensus 21 a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~l 56 (101)
T 3u59_A 21 AIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGT 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455555555555555555555555555554444333
No 117
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=46.98 E-value=79 Score=22.85 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
-|.+-+++++.+++++++.++.|..|+
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555555555553
No 118
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=46.19 E-value=47 Score=20.19 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
.+|+.+++.|-.+...|+.....+..++.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 45556666666666666655555555543
No 119
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=45.74 E-value=45 Score=19.69 Aligned_cols=27 Identities=22% Similarity=0.492 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
|..++++....+++++..++|+.+++-
T Consensus 4 iaaikeeqaaieeeiqaikeeiaaiky 30 (36)
T 1bb1_B 4 IAAIKEEQAAIEEEIQAIKEEIAAIKY 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888888888877753
No 120
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=44.98 E-value=64 Score=23.03 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
+..-++.+..++..|++++..|+.+++.-+..+.+..
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~ 47 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERAR 47 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777778888888877777776655444443
No 121
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=44.91 E-value=10 Score=32.65 Aligned_cols=42 Identities=7% Similarity=0.073 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQ---ANYDIMVKA 168 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~---~~~e~~~~~ 168 (245)
.+..+..|++++++|++|+.+|+.++..++..+ .++..++.-
T Consensus 17 ~~~~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 17 GVVDLKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDI 61 (255)
T ss_dssp ---------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444556678888889998888887776665544 344444433
No 122
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=44.32 E-value=64 Score=21.06 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
.-+..|-.++.+|.+-+...+.+|..|+....
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666777777777777777777765443
No 123
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.62 E-value=56 Score=25.26 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
+..|+++.+.+++++++|++..+.|+..+..|+..
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666665555555543
No 124
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.14 E-value=65 Score=29.44 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
.+.+..+.+.++++++.++++++++++...+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3444444444445555555555555554443
No 125
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=42.54 E-value=98 Score=22.66 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
|++-...++.+.+.++.+...+..+|..|
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL 49 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQL 49 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444444444444444444444444444
No 126
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=42.39 E-value=56 Score=19.84 Aligned_cols=28 Identities=29% Similarity=0.217 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.+|+.+++.|-.+...|+.....++.++
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455555555555555555555555544
No 127
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=42.32 E-value=42 Score=21.88 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 141 LEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 141 l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
+-+++-+|++||+.|..++.+-...
T Consensus 4 Q~EEILRLErEIE~Lqrqke~~~~~ 28 (51)
T 2lw9_A 4 QVEEILRLEKEIEDLQRMKEQQELS 28 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777665544433
No 128
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=42.17 E-value=47 Score=19.91 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.+|+++++.|-.+..+|+.....+..++
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3556666666666666666655555554
No 129
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=41.95 E-value=12 Score=22.85 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
...|..|+...+.|+.+.+.++.++..|+
T Consensus 3 ~~~i~avKkKiq~lq~q~d~aee~~~~~~ 31 (37)
T 3azd_A 3 SSSLEAVRRKIRSLQEQNYHLENEVARLK 31 (37)
T ss_dssp ---CHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777776664
No 130
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=41.92 E-value=86 Score=21.84 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+.|+.+++.|+.+++.|+.....+++.+
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544444444443
No 131
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=41.34 E-value=89 Score=22.73 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
++.-+.-...|+++...+..++..|+.++.+++.....++
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888888888888888888776655544
No 132
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=41.34 E-value=80 Score=22.82 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 136 QQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
.+....+++++.|+++|+..+..+.++
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555554444433
No 133
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.31 E-value=1.9e+02 Score=27.77 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 136 QQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
.++......++.|+.-|+.+...++.+|
T Consensus 124 ekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 124 RKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444
No 134
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.07 E-value=63 Score=20.03 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGL 148 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L 148 (245)
.--+||+.|.+.+.+|+.-.+.|
T Consensus 7 elknyiqeleernaelknlkehl 29 (46)
T 3he4_B 7 ELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHhHHHHH
Confidence 34567777766665554433333
No 135
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=41.00 E-value=46 Score=24.05 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 138 KKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 138 ~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+.+|.+++..++.||..|+.+
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~e 60 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKE 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 136
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=40.40 E-value=58 Score=19.41 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.+|+.+++.|-.+...|+.....+..++
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3566666666666666666666655554
No 137
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.22 E-value=99 Score=22.12 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
|+.-+.-...|+++...+..++..|+.++.+++.....++
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677888888888888888888888776655554
No 138
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=39.50 E-value=46 Score=26.08 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
+-|..|+.+.++++.+++.|+.++...
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666665443
No 139
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=39.07 E-value=80 Score=20.68 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
.-|..|-.++.+|..++..|+.+|..-+.+-.+..+
T Consensus 11 s~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~ 46 (52)
T 1jcd_A 11 SDAQTANAKADQASNDANAARSDAQAAKDDAARANQ 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888888888888888888877665544443
No 140
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=39.00 E-value=99 Score=22.85 Aligned_cols=25 Identities=48% Similarity=0.493 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
..|++|+++|.++|..|+..+..+.
T Consensus 50 ~eL~~EI~~L~~eI~~LE~iqs~aK 74 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKMQNNSK 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4466666666666666665544433
No 141
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=38.83 E-value=49 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.+|++.+.+..+|..|+.++..|.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666677777776666664
No 142
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.61 E-value=45 Score=30.57 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
|+.|+++..+++++++.++.++++|+.
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544
No 143
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=38.59 E-value=48 Score=25.83 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14439 137 QKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 137 ~~~~l~~e~~~L~~ei~~L~ 156 (245)
....|..+++.|+.+++.|+
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~ 36 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMS 36 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 144
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.23 E-value=1.3e+02 Score=28.99 Aligned_cols=13 Identities=0% Similarity=0.046 Sum_probs=6.6
Q ss_pred HHHHHHHHhccCC
Q psy14439 94 IKKGYDSLQDLVP 106 (245)
Q Consensus 94 In~~f~~L~~lVP 106 (245)
+...+..+...+-
T Consensus 83 seqy~k~~~E~Lr 95 (562)
T 3ghg_A 83 SHSLTTNIMEILR 95 (562)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555553
No 145
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=38.07 E-value=79 Score=20.32 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 138 KKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 138 ~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
+.+|+.....|++.|..|+..+.|++.
T Consensus 26 varlendnanlekdianlekdianler 52 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555543
No 146
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.95 E-value=1.2e+02 Score=22.84 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
++.|....++++.+++.|..++..|+..+..|+..+..
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~ 40 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKT 40 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888999999999999999998888777766654
No 147
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=37.58 E-value=1.4e+02 Score=24.96 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 122 TVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 122 ~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.++.-+++-+..|++++..|.+++++|+.++..|.
T Consensus 125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~ 159 (213)
T 1ik9_A 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQ 159 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777766666666666666666666665553
No 148
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.24 E-value=56 Score=19.62 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 140 KLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 140 ~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+|+++++.|-.+...|+.....+..++
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455555555555555555555544443
No 149
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.13 E-value=82 Score=21.82 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy14439 85 QAEQKRRDAIKKGYDSLQD 103 (245)
Q Consensus 85 ~~ErkRR~~In~~f~~L~~ 103 (245)
.+=|.-|..=...+.+|..
T Consensus 18 ~AQRafReRK~~~i~~LE~ 36 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALET 36 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333345555666666654
No 150
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=37.10 E-value=56 Score=23.36 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy14439 91 RDAIKKGYDS 100 (245)
Q Consensus 91 R~~In~~f~~ 100 (245)
|..+.+.+.+
T Consensus 26 R~AL~eaL~E 35 (79)
T 2zxx_A 26 RKALYEALKE 35 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 151
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=37.04 E-value=75 Score=28.07 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
.|..|++++++|++|+++|+++++.++.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555666666666666555555544
No 152
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=36.87 E-value=41 Score=29.76 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 136 QQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
++++.|++++++|++|+++|+..+.....
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 37778888888888888888777655554
No 153
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=36.52 E-value=17 Score=24.45 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGL 148 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L 148 (245)
.||..|++++..|+..+..|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777766666666555544
No 154
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=36.38 E-value=2.3e+02 Score=25.12 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHH-hHHhhHHHhhhhcCCCCCChH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQV-FQSIMDELFSTFCNVGVSNFS 209 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~v~~r~~~~~kf~i-f~~i~~~lf~sf~~vs~~s~~ 209 (245)
|..|......+.+....|+++.+.|++.+.+++...++ |+ .+-.+..|-+-|. ..+.+-+
T Consensus 5 ~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~------------------W~~aq~al~rL~eq~g-~~~~ds~ 65 (302)
T 3ibp_A 5 IASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPV------------------WLAAQNSLNQLSEQCG-EEFTSSQ 65 (302)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHTT-CCCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChH------------------HHHHHHHHHHHHHHhC-CcCCCHH
Confidence 45566667777777777788888887777777776644 33 5666667666553 4666888
Q ss_pred HHHHhHHHHhhhcCChhhhHHHHH
Q psy14439 210 ELSACVFSWLEEYCKPQTLKQNIA 233 (245)
Q Consensus 210 ~l~~~~~~W~~~~c~~~~lr~~v~ 233 (245)
++...+..+|+.-=.+..+|.-+.
T Consensus 66 ~v~~~mq~~Le~Ere~~~~Rd~~a 89 (302)
T 3ibp_A 66 DVTEYLQQLLEREREAIVERDEVG 89 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988866666666443
No 155
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.34 E-value=70 Score=19.16 Aligned_cols=28 Identities=7% Similarity=0.099 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.+|+++++.|-.+..+|+.....+..++
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3455566666666666655555555544
No 156
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=36.21 E-value=39 Score=22.21 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~ 157 (245)
..|+.++..|+.|...|..
T Consensus 25 ~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 157
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.97 E-value=68 Score=29.34 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIM 165 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~ 165 (245)
-+..|+++.++++.++++|++++...+..+..+...
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~ 53 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNE 53 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666666665555554444444333
No 158
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=35.82 E-value=7.9 Score=35.44 Aligned_cols=41 Identities=24% Similarity=0.477 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHH
Q psy14439 92 DAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLV 135 (245)
Q Consensus 92 ~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq 135 (245)
-.|.-||..|+++||--..+ ..++.|-.||+.|+|+++.|-
T Consensus 320 PtIdygfqRLqK~iPrhpGd---pErLpKevilkRaadl~ealy 360 (402)
T 3mlp_A 320 PTIDYGFQRLQKVIPRHPGD---PERLPKEVILKRAADLVEALY 360 (402)
T ss_dssp CTTTTTTTTTTTC--------------CHHHHHHHHHHHHHHHT
T ss_pred CccccchhhhcccCCCCCCC---hHhChHHHHHHHHHHHHHHhc
Confidence 45788999999999975432 357899999999999998874
No 159
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=35.74 E-value=1.2e+02 Score=23.39 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+.++++++.|++++.+|+.....++..+
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554444444433
No 160
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=35.50 E-value=71 Score=19.02 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 140 KLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 140 ~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+|+++++.|-.+..+|+.....+..++
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455555555555555555555555444
No 161
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=34.99 E-value=34 Score=19.32 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQFLVQ 136 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~ 136 (245)
+.+..+|=.|++|+....+
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3456788899999986654
No 162
>1szi_A TIP47, mannose-6-phosphate receptor binding protein 1; 4-helix bundle, alpha/beta domain, PAT protein, lipid binding, peptide binding; 2.80A {Mus musculus} SCOP: a.24.23.1
Probab=34.50 E-value=1e+02 Score=26.51 Aligned_cols=51 Identities=20% Similarity=0.381 Sum_probs=43.4
Q ss_pred HHhhHHHhhhhcCCCCCChHHHHHhHHHHhhhcCChhhhHHHHHHHHHHhhhcCC
Q psy14439 190 QSIMDELFSTFCNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSRIANSDS 244 (245)
Q Consensus 190 ~~i~~~lf~sf~~vs~~s~~~l~~~~~~W~~~~c~~~~lr~~v~~~l~~l~~~~~ 244 (245)
...++.|+.+|.+ ..||.||..+++. .-.|++..++..+-+++.+|.+.|.
T Consensus 177 ~~~a~eL~s~fs~--a~Sf~Dl~~~~L~--qsr~~l~~~~~sld~v~d~l~~n~P 227 (247)
T 1szi_A 177 RSQVNDLQATFSG--IHSFQDLSAGVLA--QTRERIARAREALDNTVEYVAQNTP 227 (247)
T ss_dssp HHHHHHHHHHGGG--CCSGGGCCHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHh--hcchhhcCHHHHH--HhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3459999999987 8889999888875 6678899999999999999988763
No 163
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=34.13 E-value=58 Score=23.60 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.|+.+++.|+++..+|.+++..++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666553
No 164
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=33.99 E-value=77 Score=18.98 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.+|+++++.|-.+...|+.....+..++
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455555555555555555555544443
No 165
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=33.51 E-value=1.4e+02 Score=21.67 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 122 TVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 122 ~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.++...-.-|..|+.+...+.+++..++.+++.|+
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555554
No 166
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.10 E-value=56 Score=29.77 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=6.9
Q ss_pred HHHHHHHHhccCCCC
Q psy14439 94 IKKGYDSLQDLVPTC 108 (245)
Q Consensus 94 In~~f~~L~~lVP~~ 108 (245)
....|..++.---+|
T Consensus 409 ~~~~~~~~~~~~~~~ 423 (471)
T 3mq9_A 409 AQKGFQDVEAQAATA 423 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhc
Confidence 344444444444444
No 167
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.85 E-value=1.4e+02 Score=23.09 Aligned_cols=32 Identities=3% Similarity=0.011 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 137 QKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 137 ~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
..+.+++.++.|+++++.|+.....++..+..
T Consensus 96 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 96 RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666777777776666555555433
No 168
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=32.73 E-value=1.1e+02 Score=23.06 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
||..|++++..+..+..+|.-++..+
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~ 46 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNL 46 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655555555555444443
No 169
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=32.63 E-value=76 Score=22.31 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
..|+++.+.+++++++|+.....|+
T Consensus 42 ~~L~~~~~~l~~~i~~L~~~~~~L~ 66 (99)
T 1q08_A 42 GIVQERLQEVEARIAELQSMQRSLQ 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444443
No 170
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=32.25 E-value=1.4e+02 Score=21.73 Aligned_cols=7 Identities=29% Similarity=0.653 Sum_probs=4.6
Q ss_pred cchhhHH
Q psy14439 182 DEVKFQV 188 (245)
Q Consensus 182 ~~~kf~i 188 (245)
++.+||-
T Consensus 54 eE~~~w~ 60 (96)
T 3q8t_A 54 EEAQYQR 60 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4567776
No 171
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.23 E-value=84 Score=28.97 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPL 173 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~ 173 (245)
.++.|+++.+.|+.+.+.++.++..|+.....++..++..+.++
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~ 93 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVP 93 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455555555555555555555555554444455555555443
No 172
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=32.05 E-value=1.8e+02 Score=24.59 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=17.4
Q ss_pred CCCCChHHHHHhHHHHhhhcCChh
Q psy14439 203 VGVSNFSELSACVFSWLEEYCKPQ 226 (245)
Q Consensus 203 vs~~s~~~l~~~~~~W~~~~c~~~ 226 (245)
+...++++|...+..|+.+...++
T Consensus 113 L~a~sl~~l~~~L~~~l~~~F~l~ 136 (252)
T 3e98_A 113 LDATSLEDVVSTVEDSLRHEFQVP 136 (252)
T ss_dssp HHCCSHHHHHHHHHHHHHHTSCCS
T ss_pred hcCCCHHHHHHHHHHHHHHHCCCC
Confidence 346788888888888887655554
No 173
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=31.77 E-value=74 Score=26.74 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 136 QQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+++++|.+++..|+.||..|+.+...+..++
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666665555555554
No 174
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=31.25 E-value=56 Score=22.99 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 138 KKKLEEERNGLRKEVVALRIMQAN 161 (245)
Q Consensus 138 ~~~l~~e~~~L~~ei~~L~~~~~~ 161 (245)
++.|+.+++.|+.+++.|+..+.+
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667777777777777655444
No 175
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.03 E-value=74 Score=23.25 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 117 KLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 117 K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
++.....|+.. +..|+.+++.|..|+.++.+|++.++.
T Consensus 46 r~~q~~~LE~e---~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 46 RVQQKHHLENE---KTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566543 455677777788888888777777764
No 176
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=30.85 E-value=2e+02 Score=23.49 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
++.-|.+-+..||.++..|++++...+.+...+.
T Consensus 129 li~~AertV~kLqkeiD~LEDeL~~eKek~k~i~ 162 (175)
T 3mud_A 129 LICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMH 162 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777777777777666666655553
No 177
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.79 E-value=1.1e+02 Score=21.79 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.|-.++++|..+...|+.|+.+++..+..+++.+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777666665544
No 178
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.65 E-value=1.6e+02 Score=27.75 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=6.2
Q ss_pred HHHHHHHHhccCC
Q psy14439 94 IKKGYDSLQDLVP 106 (245)
Q Consensus 94 In~~f~~L~~lVP 106 (245)
|+..+.+|...|-
T Consensus 98 V~~~LqeLe~~l~ 110 (464)
T 1m1j_B 98 VKPVLRDLKDRVA 110 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHH
Confidence 4444455544443
No 179
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.40 E-value=73 Score=24.32 Aligned_cols=13 Identities=23% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCC
Q psy14439 95 KKGYDSLQDLVPT 107 (245)
Q Consensus 95 n~~f~~L~~lVP~ 107 (245)
+.+|.+|+..+..
T Consensus 16 ~~K~eel~~~~~~ 28 (131)
T 3tnu_A 16 FTKTEELNREVAT 28 (131)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 3456677766654
No 180
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.30 E-value=1.7e+02 Score=27.21 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQ 132 (245)
Q Consensus 121 a~IL~kAi~YI~ 132 (245)
...|.+.+..++
T Consensus 504 ~~~l~~~~~~~~ 515 (597)
T 3oja_B 504 SDNLNKVFTHLK 515 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344554444443
No 181
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=29.91 E-value=58 Score=23.06 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
-|+.++.+|.+++.+|+.|..-|+
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666665554
No 182
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=29.90 E-value=2.1e+02 Score=23.65 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
+-+.-+..|.++.+....|++.|+++++.|+.....++
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33444566667777777777777777777666543333
No 183
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=29.89 E-value=1e+02 Score=23.25 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy14439 144 ERNGLRKEVVAL 155 (245)
Q Consensus 144 e~~~L~~ei~~L 155 (245)
+++.|+.+|..|
T Consensus 97 ~~~~L~~~i~~L 108 (117)
T 3kin_B 97 KNKALKSVIQHL 108 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 184
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=29.81 E-value=87 Score=21.81 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+.|+.+....++|+.+|..-|..|+....-|-.+-
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYteln 40 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDIT 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777666666665554444443
No 185
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=29.65 E-value=97 Score=18.81 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVALRIMQAN 161 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~~~~~~ 161 (245)
-+++.+|..++++-..||..|+.....
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~e 32 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 467888888998888889988766443
No 186
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=29.45 E-value=1.2e+02 Score=19.83 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
+..|+.++..|..|++.--..+..|+....+...+++.
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 33444444444444444444444566666666666554
No 187
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=29.44 E-value=1.2e+02 Score=19.65 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 134 LVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
|-+.+.+|+.....+++||+.|+..
T Consensus 16 L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 16 LATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4455555555555666666666544
No 188
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=28.98 E-value=40 Score=20.75 Aligned_cols=18 Identities=50% Similarity=0.560 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEER 145 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~ 145 (245)
|+-++.|.++++.|+.++
T Consensus 19 idkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 19 IDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444555555554444
No 189
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=28.51 E-value=1.7e+02 Score=21.92 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L 155 (245)
+++..+.+.++..|..++..|
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eL 30 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQY 30 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 190
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.39 E-value=84 Score=23.88 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
.=|..|+..++.|+.+++.|+.....|+..
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~ 65 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNA 65 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334445555555555554444444444433
No 191
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=28.18 E-value=62 Score=24.33 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 134 LVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|++++..|+.+++.|+.++..|+
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~ 24 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTN 24 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777877777775
No 192
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.03 E-value=2.5e+02 Score=23.78 Aligned_cols=49 Identities=10% Similarity=-0.033 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 118 LSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 118 ~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
.+...|.+-...-+..++.+...++.++++.+.|...+....+.+.+.+
T Consensus 160 asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQL 208 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788777788888999999999999988888888876666655444
No 193
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=27.90 E-value=90 Score=24.34 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
.|...+++|.+++..|+++++.|+.....++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888888888887665543
No 194
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=27.71 E-value=1.1e+02 Score=22.47 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14439 135 VQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLG 174 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~ 174 (245)
++++++|+.++.+|+++|+.....+..+..|..+-...|.
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~ 53 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQ 53 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5778889999999999998888887788877776444443
No 195
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.63 E-value=1.5e+02 Score=22.55 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKE 151 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~e 151 (245)
-.|...+-.||..|+.++..|+.++..-+.+
T Consensus 32 e~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 32 ENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888888776554
No 196
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=27.51 E-value=1.2e+02 Score=27.29 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLR 149 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~ 149 (245)
+|+..|+++.++++++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777766666663
No 197
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.48 E-value=2.4e+02 Score=22.53 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 89 KRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVA 154 (245)
Q Consensus 89 kRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~ 154 (245)
+=|+.|-..|.+|-.-+-.... ..-++-++.-.+-|..|+.+...++.++..|+.++.+
T Consensus 35 ~~Rd~~E~~~~~l~~e~~~~~~-------~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~e 93 (152)
T 3a7p_A 35 TDRNDKEAHLNELFQDNSGAIG-------GNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIAL 93 (152)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHhhccCCC-------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666555432211 0012222333456666777766666666666555444
No 198
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.39 E-value=1.2e+02 Score=18.96 Aligned_cols=15 Identities=47% Similarity=0.612 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy14439 141 LEEERNGLRKEVVAL 155 (245)
Q Consensus 141 l~~e~~~L~~ei~~L 155 (245)
++.|++.|++.+.+|
T Consensus 25 leselqalekklaal 39 (48)
T 1g6u_A 25 LESELQALEKKLAAL 39 (48)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444433333
No 199
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=27.35 E-value=1.4e+02 Score=24.86 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
....|+++.+++++++++|++....|+..+..++...
T Consensus 80 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 80 LFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456777777777777777777777776666655443
No 200
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=27.32 E-value=74 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 136 QQKKKLEEERNGLRKEVVALRIMQA 160 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~~~~~ 160 (245)
..-++|++++..|++++..|+..+.
T Consensus 7 ~~~~~l~~~~~~l~~~i~~lkeel~ 31 (109)
T 2wg5_A 7 HRMKQLEDKVEELLSKNYHLENEVA 31 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888764443
No 201
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=27.24 E-value=75 Score=18.15 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14439 138 KKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 138 ~~~l~~e~~~L~~ei~~L 155 (245)
...++.|..+|+..+++|
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555555
No 202
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.09 E-value=76 Score=22.37 Aligned_cols=28 Identities=7% Similarity=-0.156 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
|..|.+.+.+++.++.+|++++..|...
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777766443
No 203
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.71 E-value=3.8e+02 Score=24.69 Aligned_cols=16 Identities=6% Similarity=-0.083 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhccCCC
Q psy14439 92 DAIKKGYDSLQDLVPT 107 (245)
Q Consensus 92 ~~In~~f~~L~~lVP~ 107 (245)
..|......+......
T Consensus 484 ~~i~~~~~~~~~~~~~ 499 (597)
T 3oja_B 484 AEIDTNLRRYRLPKDG 499 (597)
T ss_dssp HHHHHHHHHTTCCCCS
T ss_pred HHhhhhhhhcCccccc
Confidence 3344444444433333
No 204
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=26.70 E-value=2.3e+02 Score=22.07 Aligned_cols=70 Identities=13% Similarity=0.041 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 86 AEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSI---DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANY 162 (245)
Q Consensus 86 ~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi---~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~ 162 (245)
.|+.++..-+..|-+=+. |.+.-. -++-..+-+.+- +.|..|..++-.++..+..-..||..|++.+..+
T Consensus 33 kE~e~k~eeKkkiLaER~--~pL~id-----~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 33 REAEERRGEKGRALSTRA--QPLELA-----GLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCCCCT-----TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 355555555555544444 444311 234444444444 4477777788888888888888888887554443
No 205
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.64 E-value=1.4e+02 Score=21.27 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
+-.+.|..+...|+.+...|+.++.+|+
T Consensus 59 ~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 59 AEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344566667777888888888887774
No 206
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=26.22 E-value=2.6e+02 Score=22.62 Aligned_cols=44 Identities=11% Similarity=0.342 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTP 172 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~ 172 (245)
++++........++.++..|+.++..|...+-.|-.-++..+..
T Consensus 117 e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~Gv~ 160 (170)
T 3l4q_C 117 QELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGAR 160 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45555555666677788888888888888888887777777654
No 207
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.11 E-value=1.2e+02 Score=27.76 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=6.6
Q ss_pred HHHHHHHHhccCCC
Q psy14439 94 IKKGYDSLQDLVPT 107 (245)
Q Consensus 94 In~~f~~L~~lVP~ 107 (245)
|+.+|++|+..|-.
T Consensus 65 ~~~rIe~L~~~L~~ 78 (390)
T 1deq_A 65 FTSRINKLRDSLFN 78 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444555444443
No 208
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=26.07 E-value=2.7e+02 Score=22.77 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 85 QAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSI---DYIQFLVQQKKKLEEERNGLRKEVVALRIMQAN 161 (245)
Q Consensus 85 ~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi---~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~ 161 (245)
..|+.++..-+..|-+=+. |.+.-. -++-..+-+.+- +.|..|..+.-.++..+..-..||..|++.+..
T Consensus 32 ~~E~e~k~eEKkkiLaER~--kPLnid-----~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~D 104 (180)
T 1j1e_C 32 EREAEERRGEKGRALSTRA--QPLELA-----GLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFD 104 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHS--CCCCGG-----GCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 3456666666666655444 544221 244555444444 447777777777888888888888888765444
Q ss_pred H
Q psy14439 162 Y 162 (245)
Q Consensus 162 ~ 162 (245)
+
T Consensus 105 L 105 (180)
T 1j1e_C 105 L 105 (180)
T ss_dssp H
T ss_pred H
Confidence 3
No 209
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.96 E-value=1.8e+02 Score=26.57 Aligned_cols=44 Identities=7% Similarity=0.034 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 125 ~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
....+-++.|+++.++++++++.+++++...+..+..+...+..
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 13 VHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666667777777666666655555555555433
No 210
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.72 E-value=1.6e+02 Score=23.53 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
|-.||++.-.|.........++..++..+..|+.....+.+
T Consensus 8 LI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~ 48 (154)
T 2ocy_A 8 LIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNT 48 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888877777777777666666666655554444
No 211
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.72 E-value=3.3e+02 Score=23.60 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=31.5
Q ss_pred HHHHHHHHHhccCCCC-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 93 AIKKGYDSLQDLVPTC-HQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 93 ~In~~f~~L~~lVP~~-~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+++..++.|....|.- .. ...+ +...-+++..+..+...+.+++..|+.++..|+..
T Consensus 71 k~~~~~~~L~~~~~~~~~~-----~~~~----~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 71 QAEQSLTVVGLATVPSSKP-----FTGS----LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHTCCCCCCSSC-----CCSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccC-----Ccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3566666666655442 11 0111 44444556666666666666666666666666554
No 212
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=25.53 E-value=1e+02 Score=17.78 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14439 134 LVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 134 Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
|+..++.|+...-..++.+++|
T Consensus 6 lkkrvqalkarnyaakqkvqal 27 (33)
T 1fmh_B 6 LKKRVQALKARNYAAKQKVQAL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444444444444
No 213
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=25.14 E-value=1.9e+02 Score=20.76 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
-|++...-++.+..+.++++.....|--.|.+|+..
T Consensus 43 ~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 43 KLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 467777788888888889999999998889988754
No 214
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=24.98 E-value=1.6e+02 Score=22.68 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=17.9
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYI----QFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 124 L~kAi~YI----~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
+..|++|+ ..|....+.+++.+..++.++..++..
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~ 134 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARK 134 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 344455555555555555555555433
No 215
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=24.94 E-value=2.9e+02 Score=22.78 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQ 170 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~ 170 (245)
..|-+|-.+-|..|++....|+++.+.|..++..-...-..++..+....
T Consensus 11 ~~i~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c 60 (190)
T 3thf_A 11 NLIKQKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKV 60 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 46778888999999999999999999999999887777777777776654
No 216
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=24.85 E-value=1.7e+02 Score=19.89 Aligned_cols=7 Identities=14% Similarity=0.529 Sum_probs=2.9
Q ss_pred HHHHHhc
Q psy14439 97 GYDSLQD 103 (245)
Q Consensus 97 ~f~~L~~ 103 (245)
.|.+|..
T Consensus 36 k~eel~~ 42 (77)
T 3trt_A 36 KFADLSE 42 (77)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 217
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=24.70 E-value=1.1e+02 Score=23.50 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHhHHhhHHHhhhhcC
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFSTFCN 202 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~v~~r~~~~~kf~if~~i~~~lf~sf~~ 202 (245)
.|.++..+|+.++..|+++++.|+..+. |+ .... ...-....+-|+ -+=+..++.||.++..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~k-~~----~~~~--~~eL~~LI~KWr-~asq~aaeeLf~~~~~ 65 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETARK-VE----AKNE--DKDLQTLIQKWK-NAAQQAAEVLFKPMAE 65 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHCC--HHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----hcCc--HHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4667777777777777777777754321 11 0000 000011123354 4456677777777764
No 218
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.55 E-value=2.3e+02 Score=21.49 Aligned_cols=16 Identities=6% Similarity=-0.070 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEE 144 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e 144 (245)
..|..|+.+.......
T Consensus 47 ~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 47 GHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 219
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=24.55 E-value=93 Score=24.11 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKA 168 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~ 168 (245)
.-+=+..|.++.+.++..++.|++.+..++..+...+..+..
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888899999999999999999888877666665544
No 220
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.49 E-value=1.9e+02 Score=20.51 Aligned_cols=43 Identities=7% Similarity=-0.050 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+-.-..-|..|+.++..|.-.++++..+++.++.....+-+-+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777888888888888888888877776655544433
No 221
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.05 E-value=1.7e+02 Score=26.89 Aligned_cols=39 Identities=5% Similarity=-0.005 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEE-------ERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~-------e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
..+++.+.+++.+++. ++..|+..+..++..+.++++.+
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555555443 55555555555554445544443
No 222
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=23.94 E-value=1.9e+02 Score=20.13 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 137 QKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 137 ~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
++++|..++..-+.||+.|+..+
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlv 26 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIA 26 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 223
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=23.69 E-value=1.4e+02 Score=23.02 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=7.5
Q ss_pred hHHhHHhhHHH
Q psy14439 186 FQVFQSIMDEL 196 (245)
Q Consensus 186 f~if~~i~~~l 196 (245)
+-+|..++..|
T Consensus 121 ~~~~~~Li~~~ 131 (146)
T 3hh0_A 121 VALFSSFLQTF 131 (146)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55677777766
No 224
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=23.54 E-value=1.5e+02 Score=26.30 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14439 141 LEEERNGLRKEVVALR 156 (245)
Q Consensus 141 l~~e~~~L~~ei~~L~ 156 (245)
|+.+++.|+++|..|+
T Consensus 33 Lq~~le~L~~KI~~LE 48 (323)
T 1lwu_B 33 MKSVLEHLRAKMQRME 48 (323)
T ss_dssp HHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 225
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.20 E-value=1.9e+02 Score=20.06 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 136 QQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 136 ~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
.....++++++.+++++++|+.....++..+..-
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 72 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQRLNDAC 72 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888887777776543
No 226
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.10 E-value=1.4e+02 Score=23.78 Aligned_cols=27 Identities=7% Similarity=0.051 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 132 QFLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 132 ~~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
..|+++..++...+..++.++.+|+..
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~ 29 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLR 29 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555555433
No 227
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=22.49 E-value=1.3e+02 Score=22.49 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
++....+.+.|++++..|+.|++..
T Consensus 91 ~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 91 YEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555666666666665543
No 228
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.29 E-value=2.6e+02 Score=22.29 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 121 ATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVA 154 (245)
Q Consensus 121 a~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~ 154 (245)
.-.++.-.|=+..|+-+...+++++..|++|-..
T Consensus 95 ~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 95 NKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444555555555555555554433
No 229
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.27 E-value=1.6e+02 Score=26.90 Aligned_cols=12 Identities=0% Similarity=0.210 Sum_probs=6.4
Q ss_pred HhhHHHhhhhcC
Q psy14439 191 SIMDELFSTFCN 202 (245)
Q Consensus 191 ~i~~~lf~sf~~ 202 (245)
-+++.+|+.||.
T Consensus 129 plv~~~l~G~n~ 140 (412)
T 3u06_A 129 PLIQSALDGYNI 140 (412)
T ss_dssp HHHHHHHTTCCE
T ss_pred HHHHHHHCCCce
Confidence 345555666664
No 230
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.21 E-value=2.5e+02 Score=24.93 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
|+.|+...+.++.++.+|+.+|..|
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444
No 231
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=21.89 E-value=92 Score=24.90 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhccCCCC
Q psy14439 88 QKRRDAIKKGYDSLQDLVPTC 108 (245)
Q Consensus 88 rkRR~~In~~f~~L~~lVP~~ 108 (245)
|+|=+.++.++..|..-.|.+
T Consensus 31 K~~~d~~~~~v~~lpe~pp~I 51 (160)
T 2cly_B 31 KSWNETLTSRLATLPEKPPAI 51 (160)
T ss_dssp HHHHHHHHHHHHHSCSSCCCC
T ss_pred HHHHHHHHHHHHhcccCCCCC
Confidence 444455555555555555543
No 232
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.81 E-value=2e+02 Score=22.00 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=32.6
Q ss_pred HHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 97 GYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 97 ~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.|+.|-+-+|.... +-.. -...|+.|+.+++...+++...-++-+.|-
T Consensus 72 qIe~LIdsLP~~~~--------see~----Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll 119 (132)
T 1ykh_B 72 QINKLIDSLPGVDV--------SAEE----QLRKIDMLQKKLVEVEDEKIEAIKKKEKLM 119 (132)
T ss_dssp HHHHHHHHSTTTTC--------CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCC--------CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888898632 2232 345688888888888877777666665553
No 233
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=21.73 E-value=1e+02 Score=20.31 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCC
Q psy14439 86 AEQKRRDAIKKGYDSLQDLVPTCH 109 (245)
Q Consensus 86 ~ErkRR~~In~~f~~L~~lVP~~~ 109 (245)
++|-+|...++.+.+|+.+.|.+.
T Consensus 4 a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 4 IKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHcccCC
Confidence 566777788999999999999963
No 234
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=21.60 E-value=73 Score=28.48 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.-.-|+.|+....++.++++.|+..+..+.
T Consensus 28 ~~~~I~~Lq~~le~l~~KIq~Le~~v~~~~ 57 (328)
T 1fzc_B 28 IPTNLRVLRSILENLRSKIQKLESDVSAQM 57 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333477788888888888888888887664
No 235
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=21.52 E-value=78 Score=28.26 Aligned_cols=26 Identities=4% Similarity=0.157 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|+.|+...++|++++.+|+..|..+.
T Consensus 30 I~~Lq~~le~L~~KI~~LE~~v~~q~ 55 (323)
T 1lwu_B 30 LRSMKSVLEHLRAKMQRMEEAIKTQK 55 (323)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666777777777777766553
No 236
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.46 E-value=1.6e+02 Score=18.46 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
|..+-++..+-++++..|+....+|+
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666666654
No 237
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=21.31 E-value=1.8e+02 Score=23.36 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCCCCccccccccchhhHHhHHhhHHHhh
Q psy14439 160 ANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFS 198 (245)
Q Consensus 160 ~~~e~~~~~~~~~~~~v~~r~~~~~kf~if~~i~~~lf~ 198 (245)
..++.++.+-...+. .-|-.|..+++.+|.
T Consensus 62 ~~f~~m~~qL~i~~~---------~a~~~f~~Va~elF~ 91 (175)
T 1ohu_A 62 ENFETFSEQLLAVPR---------ISFSLYQDVVRTVGN 91 (175)
T ss_dssp HHHHHHHHHHTSSSS---------CCHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhCCCCc---------hhHHHHHHHHHHHhc
Confidence 346666655544331 124568888998888
No 238
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.31 E-value=2.8e+02 Score=23.01 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 128 IDYIQFLVQQKKKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 128 i~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~ 159 (245)
++++.++-.....+++++..|.++++.|+...
T Consensus 124 ~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~ 155 (213)
T 1ik9_A 124 RELIAYALDTIAENQAKNEHLQKENERLLRDW 155 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777777777777765544
No 239
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.27 E-value=2.7e+02 Score=22.70 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 119 SKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 119 sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+-+.+.+.-|.| =.+.+.+|+.+++.|+.++...+.........+
T Consensus 121 ~paE~ireli~~---AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 121 NPAEVIRELICY---CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655555 456788999999999999988876655555544
No 240
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.27 E-value=40 Score=24.08 Aligned_cols=29 Identities=14% Similarity=0.019 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 129 DYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 129 ~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
+-+..|..+...++.++..+..+=++|..
T Consensus 56 ~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 56 EQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777666653
No 241
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=21.18 E-value=2.6e+02 Score=20.76 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
.|++.-..+...|++..+-.+|+.++..++++|-.
T Consensus 56 ~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLls 90 (114)
T 2xzr_A 56 TLQQHSARLDSQQRQINENHKEMKQIEDKIEEILS 90 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667777777777777777777777777643
No 242
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=21.17 E-value=2.5e+02 Score=20.67 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14439 142 EEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 142 ~~e~~~L~~ei~~L~~~~ 159 (245)
+.+++.|+.||..|+...
T Consensus 66 q~~v~elqgEI~~Lnq~L 83 (99)
T 3ni0_A 66 QARIKELENEVTKLNQEL 83 (99)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666666665443
No 243
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.12 E-value=1.7e+02 Score=26.16 Aligned_cols=30 Identities=17% Similarity=0.010 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVALRIMQANYDI 164 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~~~~~~~e~ 164 (245)
..+++.|+..++.++..|..|+..+..++.
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556655544444443
No 244
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=21.03 E-value=56 Score=23.13 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 135 VQQKKKLEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 135 q~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
+++++-|++++..|...+..|+.+..-+.+.+
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566677777777777777765544444333
No 245
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.01 E-value=3.2e+02 Score=21.74 Aligned_cols=42 Identities=7% Similarity=0.103 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 122 TVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYD 163 (245)
Q Consensus 122 ~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e 163 (245)
.+-..|=..+..=+.+...++.++..|++++.+-+..+...+
T Consensus 94 sLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 94 SLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555555544444333333
No 246
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.00 E-value=1.6e+02 Score=18.20 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14439 131 IQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ 169 (245)
Q Consensus 131 I~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~ 169 (245)
++.|+.-+++|++....|+.-.+-|+-.+..++-.+.++
T Consensus 5 vkelknyiqeleernaelknlkehlkfakaelefelaah 43 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLKFAKAELEFELAAH 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 577778888888888888888888887777777666554
No 247
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.90 E-value=1.9e+02 Score=30.01 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRI 157 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~ 157 (245)
|++.++=++.++.++++++.++..|++|++.|+.
T Consensus 965 L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 965 LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998 (1080)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 248
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=20.85 E-value=1.9e+02 Score=19.18 Aligned_cols=21 Identities=33% Similarity=0.232 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRK 150 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ 150 (245)
-|..|+....+++.|+.+|.+
T Consensus 26 kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 26 KIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444443
No 249
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.80 E-value=2.6e+02 Score=20.61 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL 155 (245)
Q Consensus 124 L~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L 155 (245)
|.++-+-|..|+.++...+.++..|..++..-
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE 38 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKE 38 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444555555555555555555555444443
No 250
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.66 E-value=2.1e+02 Score=22.51 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=33.0
Q ss_pred HHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 97 GYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156 (245)
Q Consensus 97 ~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~ 156 (245)
.|+.|-+-+|.... +-.. -...|+.|+.+++...+++...-++-+.|-
T Consensus 72 qIe~LIdsLPg~~~--------seee----Q~~ri~~Le~E~~~~~~el~~~v~eae~ll 119 (151)
T 1yke_B 72 QINKLIDSLPGVDV--------SAEE----QLRKIDMLQKKLVEVEDEKIEAIKKKEKLL 119 (151)
T ss_dssp HHHHHHHHCTTSSS--------CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCC--------CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888898632 2222 345788888888888887777666666654
No 251
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=20.51 E-value=1.4e+02 Score=22.65 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 141 LEEERNGLRKEVVALRIMQANYDIMV 166 (245)
Q Consensus 141 l~~e~~~L~~ei~~L~~~~~~~e~~~ 166 (245)
++++++.|++++.+|+..+..++..+
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 84 TLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 252
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.51 E-value=2.3e+02 Score=19.82 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 130 YIQFLVQQKKKLEEERNGLRK 150 (245)
Q Consensus 130 YI~~Lq~~~~~l~~e~~~L~~ 150 (245)
-|+.|+.+...-+.|+.+|++
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e 39 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKE 39 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443
No 253
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=20.48 E-value=1.8e+02 Score=18.67 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 123 VLQKSIDYIQFLVQQKKKLEEERNGLRKE 151 (245)
Q Consensus 123 IL~kAi~YI~~Lq~~~~~l~~e~~~L~~e 151 (245)
.-.++.+-|+.|.++...+-.+++.|+.+
T Consensus 17 FQ~~v~~~l~~Lt~kL~~vt~rle~lEnr 45 (47)
T 1aq5_A 17 FQTKVEELINTLQQKLEAVAKRIEALENK 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33466777777777666666666555443
No 254
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=20.46 E-value=1.1e+02 Score=21.87 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14439 139 KKLEEERNGLRKEVVALRIMQ 159 (245)
Q Consensus 139 ~~l~~e~~~L~~ei~~L~~~~ 159 (245)
++..++++.|++.|++|+..+
T Consensus 55 ~QideeV~~LKe~IdaLNK~K 75 (83)
T 1zke_A 55 TQLSEEVERLKELINALNKIK 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888886543
No 255
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=20.31 E-value=3.2e+02 Score=23.23 Aligned_cols=74 Identities=12% Similarity=-0.008 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc--cchhhHHhHHhhHHHhhh
Q psy14439 126 KSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLS--DEVKFQVFQSIMDELFST 199 (245)
Q Consensus 126 kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~v~~r~~--~~~kf~if~~i~~~lf~s 199 (245)
.+=+.|..|.....++....+..++++..++.....++..++-...---+|+.... +..-=.+|.-||...|-.
T Consensus 10 ~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPn 85 (233)
T 2yko_A 10 QLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDVENGTKLENTLQDIIQENFPN 85 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEeecCCCcccccccHHHHHHHHHHHhCCC
Confidence 34456666666666666555555556655555545555555443222122222221 222235788898888853
No 256
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=20.27 E-value=1.5e+02 Score=17.72 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 133 FLVQQKKKLEEERNGLRKEVVALRIM 158 (245)
Q Consensus 133 ~Lq~~~~~l~~e~~~L~~ei~~L~~~ 158 (245)
.||.+..+|-.+.+.|++.-+.|+..
T Consensus 4 slq~dE~kLl~ekE~l~~r~eqL~~k 29 (34)
T 1a93_A 4 GVQAEEQKLISEEDLLRKRREQLKHK 29 (34)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777766543
No 257
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.09 E-value=2.5e+02 Score=20.16 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439 127 SIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVK 167 (245)
Q Consensus 127 Ai~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~ 167 (245)
..+.|...+.+...+..++..|+.++..|+..+..+...+.
T Consensus 62 ~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 62 REELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888888999999999999999999877766665543
Done!