RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14439
(245 letters)
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA
binding, complex (transcription factor MAX/DNA),
transcription/DNA complex; HET: DNA; 2.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 80
Score = 88.9 bits (221), Expect = 2e-23
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 69 SGSPLNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSI 128
+ +R H E+KRRD IK + SL+D VP+ G K S+A +L K+
Sbjct: 2 DDIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSL-----QGEKASRAQILDKAT 56
Query: 129 DYIQFLVQQKKKLEEERNGLRKE 151
+YIQ++ ++ +++ + L+++
Sbjct: 57 EYIQYMRRKNHTHQQDIDDLKRQ 79
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 86.6 bits (215), Expect = 3e-22
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLV 135
+R H E++RR+ +K+ + +L+D +P + K K +L+K+ YI +
Sbjct: 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNE----KAPKVVILKKATAYILSVQ 58
Query: 136 QQKKKLEEERNGLRKEVVALR 156
+++KL E + LRK L+
Sbjct: 59 AEEQKLISEEDLLRKRREQLK 79
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A);
basic-helix-loop- helix-leucine zipper, transcription
factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1
PDB: 1ukl_C
Length = 82
Score = 85.9 bits (213), Expect = 4e-22
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLV 135
+ +R AH E++ R +I L+DLV KL+K+ VL+K+IDYI+FL
Sbjct: 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEA------KLNKSAVLRKAIDYIRFLQ 56
Query: 136 QQKKKLEEERNGLRKEVVALRIMQ 159
+KL++E LR V + ++
Sbjct: 57 HSNQKLKQENLSLRTAVHKSKSLK 80
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Length = 83
Score = 82.4 bits (204), Expect = 7e-21
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 79 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQK 138
+R H E+KRRD IK + SL+D VP+ G K S+A +L K+ +YIQ++ ++
Sbjct: 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSL-----QGEKASRAQILDKATEYIQYMRRKN 56
Query: 139 KKLEEERNGLRKEVVALR 156
+++ + L+++ L
Sbjct: 57 HTHQQDIDDLKRQNALLE 74
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double
helix, overhanging base, transcription/DNA complex; HET:
DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Length = 65
Score = 78.1 bits (193), Expect = 2e-19
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 77 ERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQ 136
E+RR H + E++RRD I L ++P + SK +L K+ DYIQ L Q
Sbjct: 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKS-GQSKGGILSKASDYIQELRQ 61
Query: 137 QKKK 140
+
Sbjct: 62 SNHR 65
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ,
transcription/DNA complex; 2.00A {Homo sapiens} SCOP:
a.38.1.1
Length = 80
Score = 62.5 bits (152), Expect = 3e-13
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 80 REAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKK 139
R H + E+ RR ++ + L+ LVP + + ++L K+ +I+ L +
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLG----PDSSRHTTLSLLTKAKLHIKKLEDSDR 57
Query: 140 KLEEERNGLRKEVVALR 156
K + + L++E L+
Sbjct: 58 KAVHQIDQLQREQRHLK 74
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4);
transcription factor, basic helix loop helix; HET: DNA;
2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Length = 63
Score = 56.4 bits (136), Expect = 3e-11
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 79 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQ 137
+RE+H AEQ RR+ + L L+P + + SKAT ++ + YI+ L Q
Sbjct: 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60
>2ql2_B Neurod1, neurogenic differentiation factor 1;
basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Length = 60
Score = 40.7 bits (96), Expect = 1e-05
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 79 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQ 136
RR E+ R + D+L+ +VP S KLSK L+ + +YI L +
Sbjct: 2 RRMKANARERNRMHGLNAALDNLRKVVPC----YSKTQKLSKIETLRLAKNYIWALSE 55
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic
helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB:
2ql2_A*
Length = 76
Score = 40.3 bits (94), Expect = 3e-05
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 79 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQK 138
+R H E+KRR I + + L C S +K +LQ+++ I L QQ
Sbjct: 5 KRAHHNALERKRRRDINEAFRELGR---MCQMHLKSDKAQTKLLILQQAVQVILGLEQQV 61
Query: 139 KK 140
++
Sbjct: 62 RE 63
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
transcription-activato; 2.27A {Mus musculus}
Length = 387
Score = 43.1 bits (101), Expect = 4e-05
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQ 132
+ REAH+Q E++RRD + D L LVPTC+ KL K TVL+ ++ +++
Sbjct: 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSR---KLDKLTVLRMAVQHMK 63
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA
complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1
PDB: 1mdy_B*
Length = 68
Score = 38.9 bits (91), Expect = 7e-05
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 79 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFL 134
RR+A T E++R + + +++L+ + +L K +L+ +I YI+ L
Sbjct: 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQ-----RLPKVEILRNAIRYIEGL 62
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 68
Score = 35.9 bits (82), Expect = 0.001
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 78 RRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFL 134
+ + D + Y L++LVP + G +LS+ +LQ+ IDYI L
Sbjct: 13 GGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR----GTQLSQVEILQRVIDYILDL 65
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS,
circadian rhythm proteins, transcription-activato; 2.27A
{Mus musculus}
Length = 361
Score = 36.5 bits (84), Expect = 0.006
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 78 RRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQ 132
+R + ++E+KRRD L ++P ++ K+ K+TVLQKSID+++
Sbjct: 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLP----GNAR--KMDKSTVLQKSIDFLR 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.053
Identities = 36/240 (15%), Positives = 77/240 (32%), Gaps = 40/240 (16%)
Query: 24 RNMKAEPISPNSM--VSYSRSNSNGSFQSASNNVGNNSSSSGHEDEESGSPLNYKERRRE 81
+ K + + ++ NS + + + + S + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-----KLR 226
Query: 82 AHTQAEQKRRDAIKKGY-DSLQDL--VPTCHQTDSSGYKLSKATVL----QKSI-DYIQF 133
H+ + RR K Y + L L V + + + L +L K + D++
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNL-SCKILLTTRFKQVTDFLSA 283
Query: 134 LVQQKKKLEEERNGL-RKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSI 192
L+ L EV +L Y + + Q P E ++ + +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSL---LLKY-LDCRPQDLPR---EVLTTNPRRLSIIAES 336
Query: 193 MDELFSTFCNVGVSNFSELSACVFSWLEEYCKPQTLKQ------------NI-ASVLSRI 239
+ + +T+ N N +L+ + S L +P ++ +I +LS I
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Score = 30.6 bits (68), Expect = 0.48
Identities = 25/205 (12%), Positives = 71/205 (34%), Gaps = 45/205 (21%)
Query: 66 DEESGSPLNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKL--SKATV 123
D SG+ + + ++ + ++ Y L + T + S ++ +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 124 LQKSID-YIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDI----MVKAQQTPLGQT-- 176
L + ++ V + + + R L + ++ ++ ++ + G+T
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLE-------LRPAKNVLIDGVLGS-----GKTWV 166
Query: 177 --EARLSDEVK----FQVF----------QSIMDELFSTFCNVGVSNFSELSACVFSWLE 220
+ LS +V+ F++F +++++ L N++ S +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRS-------D 218
Query: 221 EYCKPQTLKQNIASVLSRIANSDSH 245
+ +I + L R+ S +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPY 243
Score = 29.8 bits (66), Expect = 0.94
Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 49/175 (28%)
Query: 40 SRSNSNGSFQSASN--NVGNNSSSSGHEDEESGSPL------NYKERRREAHTQ------ 85
+R F SA+ ++ + S +E S L ++ RE T
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 86 --AEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEE 143
AE R +D+ + + D KL+ T+++ S++ ++
Sbjct: 332 IIAESIRDGLAT--WDNWKHV-----NCD----KLT--TIIESSLNVLE---------PA 369
Query: 144 ERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFS 198
E RK L + + I P + + +V ++++L
Sbjct: 370 E---YRKMFDRLSVFPPSAHI-------PT-ILLSLIWFDVIKSDVMVVVNKLHK 413
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.11
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
Query: 88 QKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLS-KATV 123
+K+ A+KK SL+ DS+ L+ KAT+
Sbjct: 18 EKQ--ALKKLQASLKLYAD-----DSAP-ALAIKATM 46
Score = 26.8 bits (58), Expect = 4.4
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 20/40 (50%)
Query: 136 QQKKKLEEERNGLRKEVVALRIMQANY--D----IMVKAQ 169
Q KKL+ +L++ Y D + +KA
Sbjct: 20 QALKKLQA----------SLKL----YADDSAPALAIKAT 45
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens}
PDB: 2o2f_A*
Length = 144
Score = 30.4 bits (68), Expect = 0.24
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQV 188
YI + + Q+ + LR ++ + + L+
Sbjct: 9 KYIHYKLSQRGYEWDAGADSEVVHKTLREAGDDFSRRYRRDFAEMSS-GLHLTPFTARGR 67
Query: 189 FQSIMDELFSTFCNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSRIAN 241
F ++++ELF N G F + C +++ + ++ ++ IA
Sbjct: 68 FATVVEELFRDGVNWG------RIVAFFEFGGVMCV-ESVNREMSPLVDNIAL 113
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal,
mitochondrion, protein- complex; 1.8A {Mus musculus}
PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Length = 157
Score = 29.3 bits (65), Expect = 0.76
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 129 DYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQV 188
Y+Q+++Q + + L+ + + V+ S + +
Sbjct: 20 HYLQYVLQV----PAFESAPSQACRVLQRVAFSVQKEVEKNLKSYLDDFHVESIDTARII 75
Query: 189 FQSIMDELFSTFCNVGVSNFSELSACVF 216
F +M++ F G+ N+ +
Sbjct: 76 FNQVMEKEFED----GIINWGRIVTIFA 99
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 27.4 bits (61), Expect = 1.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 106 PTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEE 144
PTCHQ D S L L+++++ + K+L ++
Sbjct: 54 PTCHQNDVSPDALIANKFLRQAVNNFKNETGYTKRLRKQ 92
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
HET: V4Z; 2.75A {Homo sapiens}
Length = 329
Score = 28.8 bits (65), Expect = 1.7
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 1 MARGSLNSDLHSHLPSINEVGSDRNMKAEPISPNSMVSYSR 41
M G LN L SH P + ++ P+ +++ +
Sbjct: 125 MRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVAS 165
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 26.3 bits (58), Expect = 2.1
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156
+ + L + +LE+E++ L+ E+ L
Sbjct: 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLL 50
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 28.0 bits (62), Expect = 2.4
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 24 RNMKAEPISPNSMVSYSRSNSNGSFQ-SASNNVGNNSSS 61
+ + +SY +N F+ A N V S
Sbjct: 131 QGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEM 169
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 27.8 bits (61), Expect = 2.7
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 68 ESGSPLNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKS 127
ES + R + + + +++ L++ + + + L+
Sbjct: 3 ESERSEAFGIPRDSPLSSGDAAELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEAR 62
Query: 128 IDYIQFLVQQKKKLEEERNGLRKEVVALR 156
ID L + KL E R++++ALR
Sbjct: 63 IDS---LAARNSKLMETLKEARQQLLALR 88
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 28.3 bits (63), Expect = 2.9
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 124 LQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDE 183
L+K Q L + K+KLE E + L +++ L+ A + ++ L ARL DE
Sbjct: 1048 LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE 1107
Query: 184 V-KFQVFQSIMDEL 196
+ + EL
Sbjct: 1108 TSQKNNALKKIREL 1121
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 3.3
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 24/90 (26%)
Query: 63 GHEDEESGSPLNYKERRREAHTQAEQ-KRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKA 121
D + P + ++ R E Q ++ + DA K Q+ KA
Sbjct: 75 AQADRLTQEPESIRKWREE---QRKRLQELDAASK--VMEQEWR-------------EKA 116
Query: 122 TVLQKSIDYIQFLVQQKKKLEEERNGLRKE 151
+K ++ ++ +Q +++E+ + R
Sbjct: 117 ---KKDLE--EWNQRQSEQVEKNKINNRIA 141
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo sapiens}
SCOP: h.1.3.1
Length = 61
Score = 25.4 bits (56), Expect = 5.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 125 QKSIDYIQFLVQQKKKLEEERNGLRKEVVALR 156
QK ++Q L ++ + L L+ EV LR
Sbjct: 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR 49
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 26.8 bits (59), Expect = 5.2
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 24 RNMKAEPISPNSMVSYSRSNSNGSFQ-SASNNVGNNSSS 61
+ + +SY +N F+ A N V S
Sbjct: 136 QGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEM 174
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 26.8 bits (59), Expect = 5.3
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 32 SPNSMVSYSRSNSNGSFQ-SASNNVGNNSSS 61
+SY +N F+ A N V S
Sbjct: 134 LRQKTMSYQWTNLRAPFKCKAVNRVSQESEM 164
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 27.2 bits (59), Expect = 6.3
Identities = 10/61 (16%), Positives = 21/61 (34%)
Query: 100 SLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQ 159
+DL+ T + + QF+V Q + +E ++ + M+
Sbjct: 239 VYEDLINKIETTVPPSTINVNRFTEDSLLRHAQFVVSQVESYDEAKDDDETPIFLSPCMR 298
Query: 160 A 160
A
Sbjct: 299 A 299
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.124 0.341
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,340,354
Number of extensions: 180462
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 49
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.7 bits)