RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14439
(245 letters)
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 69.5 bits (170), Expect = 3e-16
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 79 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQK 138
+R H E+KRRD IK + SL+D VP+ G K S+A +L K+ +YIQ++ ++
Sbjct: 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-----GEKASRAQILDKATEYIQYMRRKN 56
Query: 139 KKLEEERNGLRKEVVALR 156
+++ + L+++ L
Sbjct: 57 HTHQQDIDDLKRQNALLE 74
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 69.2 bits (169), Expect = 3e-16
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLV 135
+ +R AH E++ R +I L+DLV KL+K+ VL+K+IDYI+FL
Sbjct: 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEA------KLNKSAVLRKAIDYIRFLQ 56
Query: 136 QQKKKLEEERNGLRKEVVALRIMQ 159
+KL++E LR V + ++
Sbjct: 57 HSNQKLKQENLSLRTAVHKSKSLK 80
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 68.6 bits (168), Expect = 3e-16
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLV 135
E+RR H + E++RRD I L ++P + SK +L K+ DYIQ L
Sbjct: 2 DEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKS-GQSKGGILSKASDYIQELR 60
Query: 136 QQKKK 140
Q +
Sbjct: 61 QSNHR 65
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 69.2 bits (169), Expect = 4e-16
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLV 135
+R H E++RR+ +K+ + +L+D +P K K +L+K+ YI +
Sbjct: 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELEN----NEKAPKVVILKKATAYILSVQ 58
Query: 136 QQKKKLEEERNGLRKEVVALR 156
+++KL E + LRK L+
Sbjct: 59 AEEQKLISEEDLLRKRREQLK 79
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 67.2 bits (164), Expect = 1e-15
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 79 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQ 137
+RE+H AEQ RR+ + L L+P + + SKAT ++ + YI+ L Q
Sbjct: 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 66.5 bits (162), Expect = 3e-15
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 80 REAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKK 139
R H + E+ RR ++ + L+ LVP + + + ++L K+ +I+ L +
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSS----RHTTLSLLTKAKLHIKKLEDSDR 57
Query: 140 KLEEERNGLRKEVVALR 156
K + + L++E L+
Sbjct: 58 KAVHQIDQLQREQRHLK 74
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 56.0 bits (135), Expect = 2e-11
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLV 135
RR+A T E++R + + +++L+ + L K +L+ +I YI+ L
Sbjct: 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQR-----LPKVEILRNAIRYIEGL- 62
Query: 136 QQKKKLEE 143
+ L +
Sbjct: 63 --QALLRD 68
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 53.2 bits (128), Expect = 1e-10
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 91 RDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRK 150
R +I L+DLV K+ K+ VL+K+IDYI++L Q KL +E L+
Sbjct: 1 RSSINDKIIELKDLVMGTDA------KMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKL 54
Query: 151 E 151
Sbjct: 55 A 55
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo
sapiens) [TaxId: 9606]}
Length = 192
Score = 30.7 bits (69), Expect = 0.11
Identities = 16/122 (13%), Positives = 40/122 (32%), Gaps = 21/122 (17%)
Query: 129 DYIQFLVQQ------KKKLEEERNG--LRKEVVALRIMQANYDIMVKAQQTPLGQTEARL 180
+IQ + + L+ +K L+ + D ++ Q+ A +
Sbjct: 29 GFIQDRAGRMGGEAPELALDPVPQDASTKKLSECLKRIGDELDSNMELQRMI-----AAV 83
Query: 181 SDEVKFQVFQSIMDELFSTFCNVGVSNFSELSACVFSW-LEEYCKPQTLKQNIASVLSRI 239
+ +VF + ++FS + + ++ F+ L L + ++ I
Sbjct: 84 DTDSPREVFFRVAADMFS---DGNFNWGRVVALFYFASKLVLKA----LCTKVPELIRTI 136
Query: 240 AN 241
Sbjct: 137 MG 138
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 76
Score = 25.8 bits (57), Expect = 1.7
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 90 RRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEER 145
+++A++ DLV ++ +DY +F +Q+KK +E R
Sbjct: 29 KQEALEIAARRNLDLVLVAPNAKPPVCRI---------MDYGKFRFEQQKKEKEAR 75
>d1u9da_ d.80.1.5 (A:) Hypothetical protein VC0714 {Vibrio cholerae
[TaxId: 666]}
Length = 122
Score = 24.8 bits (54), Expect = 7.2
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 77 ERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGY 116
R ++ Q Q D I++ + L + Y
Sbjct: 76 GREQQTQDQIAQVITDQIRQLLGADSHLAVVFIPLQRTAY 115
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 23.5 bits (51), Expect = 8.7
Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 136 QQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSD-EVKFQVFQSIMD 194
+ +++ E+ L + A+ KA + + EARL + + + + +
Sbjct: 4 EWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALS 63
Query: 195 EL 196
++
Sbjct: 64 QI 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.124 0.341
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 797,293
Number of extensions: 33743
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 16
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.0 bits)