Query psy1444
Match_columns 71
No_of_seqs 7 out of 9
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 19:54:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdy_A Protein (MYOD BHLH doma 3.8 2E+02 0.007 16.6 -0.0 6 1-6 1-6 (68)
2 1rmk_A MU-O-conotoxin mrvib; b 3.1 2.6E+02 0.0089 14.8 -0.1 7 2-8 1-7 (31)
3 1hw7_A Heat shock protein HSP3 2.0 4.8E+02 0.016 18.2 0.1 8 2-9 233-240 (255)
4 1wqb_A Aptotoxin VII; spider'S 1.5 9E+02 0.031 12.6 0.7 12 1-12 2-13 (32)
5 1ceu_A Protein (HIV-1 regulato 1.5 9.6E+02 0.033 13.6 0.8 8 8-15 6-13 (51)
6 1vzy_A 33 kDa chaperonin; chap 1.5 7.1E+02 0.024 17.6 0.2 6 2-7 236-241 (291)
7 1qdp_A Robustoxin; neurotoxin, 1.4 6.6E+02 0.022 14.0 -0.0 6 3-8 1-6 (42)
8 1i7f_A Heat shock protein 33; 1.4 7.1E+02 0.024 17.7 0.1 6 2-7 231-236 (292)
9 1vq0_A 33 kDa chaperonin; TM13 1.4 7.6E+02 0.026 17.8 0.2 6 2-7 244-249 (302)
10 2roo_A Neurotoxin MAGI-4; spid 1.3 6.5E+02 0.022 14.1 -0.2 6 3-8 1-6 (43)
No 1
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=3.83 E-value=2e+02 Score=16.60 Aligned_cols=6 Identities=50% Similarity=0.595 Sum_probs=2.9
Q ss_pred Ccchhh
Q psy1444 1 MTCSRK 6 (71)
Q Consensus 1 ~~~~~~ 6 (71)
|+|.|+
T Consensus 1 ~~ckr~ 6 (68)
T 1mdy_A 1 MELKRK 6 (68)
T ss_dssp CCSSCC
T ss_pred CCCCcC
Confidence 455543
No 2
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=3.13 E-value=2.6e+02 Score=14.85 Aligned_cols=7 Identities=57% Similarity=1.056 Sum_probs=3.9
Q ss_pred cchhhhh
Q psy1444 2 TCSRKRE 8 (71)
Q Consensus 2 ~~~~~~~ 8 (71)
|||||-|
T Consensus 1 ~C~rrW~ 7 (31)
T 1rmk_A 1 ACSKKWE 7 (31)
T ss_dssp CEECTTS
T ss_pred Ccccccc
Confidence 4666543
No 3
>1hw7_A Heat shock protein HSP33; dimerization, oxidative stress; HET: MES; 2.20A {Escherichia coli} SCOP: d.193.1.1 PDB: 3m7m_X
Probab=1.99 E-value=4.8e+02 Score=18.23 Aligned_cols=8 Identities=63% Similarity=0.974 Sum_probs=1.5
Q ss_pred cchhhhhc
Q psy1444 2 TCSRKREK 9 (71)
Q Consensus 2 ~~~~~~~~ 9 (71)
+|||.|-.
T Consensus 233 ~CSrer~~ 240 (255)
T 1hw7_A 233 TCSRERCA 240 (255)
T ss_dssp CC------
T ss_pred CCCHHHHH
Confidence 68887754
No 4
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=1.54 E-value=9e+02 Score=12.62 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=0.0
Q ss_pred CcchhhhhccCC
Q psy1444 1 MTCSRKREKSMP 12 (71)
Q Consensus 1 ~~~~~~~~~~gP 12 (71)
+-|.|-.|.-||
T Consensus 2 lgcarvkeacgp 13 (32)
T 1wqb_A 2 LGCARVKEACGP 13 (32)
T ss_dssp CCCBCTTSBCCS
T ss_pred cchHHhhhccCC
No 5
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=1.52 E-value=9.6e+02 Score=13.62 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=0.0
Q ss_pred hccCCCCC
Q psy1444 8 EKSMPGAD 15 (71)
Q Consensus 8 ~~~gP~~d 15 (71)
|++||-++
T Consensus 6 EdqgP~Re 13 (51)
T 1ceu_A 6 EDQGPQRE 13 (51)
T ss_dssp CTTTTCCC
T ss_pred CCCCCCCC
No 6
>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal engineering, molecular chaperone, redox-active center, PSI; 1.97A {Bacillus subtilis} SCOP: d.193.1.1 g.81.1.1
Probab=1.50 E-value=7.1e+02 Score=17.63 Aligned_cols=6 Identities=50% Similarity=1.243 Sum_probs=0.0
Q ss_pred cchhhh
Q psy1444 2 TCSRKR 7 (71)
Q Consensus 2 ~~~~~~ 7 (71)
+|||.|
T Consensus 236 ~CSrer 241 (291)
T 1vzy_A 236 PCSKER 241 (291)
T ss_dssp CCCHHH
T ss_pred CCCHHH
No 7
>1qdp_A Robustoxin; neurotoxin, cystine knot, inhibitor cystine knot motif, sodium channel modulator, funnel WEB spider, venom; NMR {Atrax robustus} SCOP: g.3.6.2 PDB: 1vtx_A
Probab=1.44 E-value=6.6e+02 Score=14.01 Aligned_cols=6 Identities=50% Similarity=1.337 Sum_probs=0.0
Q ss_pred chhhhh
Q psy1444 3 CSRKRE 8 (71)
Q Consensus 3 ~~~~~~ 8 (71)
|++||.
T Consensus 1 Ca~kr~ 6 (42)
T 1qdp_A 1 CAKKRN 6 (42)
T ss_dssp CCCTTS
T ss_pred Cccchh
No 8
>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone, chaperone; 2.70A {Escherichia coli} SCOP: d.193.1.1 PDB: 1xjh_A
Probab=1.42 E-value=7.1e+02 Score=17.71 Aligned_cols=6 Identities=83% Similarity=1.486 Sum_probs=0.0
Q ss_pred cchhhh
Q psy1444 2 TCSRKR 7 (71)
Q Consensus 2 ~~~~~~ 7 (71)
+|||.|
T Consensus 231 ~CSrer 236 (292)
T 1i7f_A 231 TCSRER 236 (292)
T ss_dssp C-----
T ss_pred CCCHHH
No 9
>1vq0_A 33 kDa chaperonin; TM1394, joint center for structural genomics, protein structure initiative, PSI, chaperone; HET: UNL; 2.20A {Thermotoga maritima} SCOP: d.193.1.1 g.81.1.1
Probab=1.41 E-value=7.6e+02 Score=17.75 Aligned_cols=6 Identities=33% Similarity=1.165 Sum_probs=0.0
Q ss_pred cchhhh
Q psy1444 2 TCSRKR 7 (71)
Q Consensus 2 ~~~~~~ 7 (71)
+|||.|
T Consensus 244 ~CSreR 249 (302)
T 1vq0_A 244 DCNREK 249 (302)
T ss_dssp CCCHHH
T ss_pred CCCHHH
No 10
>2roo_A Neurotoxin MAGI-4; spider, sodium channel inhibitor, cleavage on PAIR of basic residues, ionic channel inhibitor, knottin, secreted; NMR {Synthetic}
Probab=1.34 E-value=6.5e+02 Score=14.11 Aligned_cols=6 Identities=50% Similarity=1.088 Sum_probs=0.0
Q ss_pred chhhhh
Q psy1444 3 CSRKRE 8 (71)
Q Consensus 3 ~~~~~~ 8 (71)
|++||.
T Consensus 1 Ca~kr~ 6 (43)
T 2roo_A 1 CGSKRA 6 (43)
T ss_dssp CBCSSS
T ss_pred Cccchh
Done!