RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1444
         (71 letters)



>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase
           component YidC; Provisional.
          Length = 329

 Score = 28.9 bits (65), Expect = 0.15
 Identities = 11/56 (19%), Positives = 16/56 (28%)

Query: 15  DRNKGPRADRDKGPGANRDKGPRADRDKGPKADRDKGPRANRDKGPRANRDKGPGA 70
              KG      +G     +       +   +  R    R    +  RA R KG  A
Sbjct: 273 LAKKGKDHGESEGKVVAPEGAVAQTTEVREQTKRQTVQRQQPKRQSRAKRQKGGAA 328


>gnl|CDD|239159 cd02758, MopB_Tetrathionate-Ra, The MopB_Tetrathionate-Ra CD
           contains tetrathionate reductase, subunit A, (TtrA) and
           other related proteins. The Salmonella enterica
           tetrathionate reductase catalyses the reduction of
           trithionate but not sulfur or thiosulfate. Members of
           this CD belong to the molybdopterin_binding (MopB)
           superfamily of proteins.
          Length = 735

 Score = 25.4 bits (56), Expect = 3.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 12  PGADRNKGPRADRDKGPGANRDKGPRADRDK 42
             AD + GPR D  K  G  +  G   DR K
Sbjct: 411 GFADNSAGPRYDFKKFFGEVKPWGVPIDRSK 441


>gnl|CDD|112890 pfam04094, DUF390, Protein of unknown function (DUF390).  This is a
           family of long proteins currently only found in the rice
           genome. They have no known function. However they may be
           some kind of transposable element.
          Length = 843

 Score = 24.8 bits (53), Expect = 4.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 4   SRKREKSMPGADRNKGPRADRDKGPGANRDKGPRADRDKG 43
           SR+ E+S PG  R  GP   RD GPG +R    R  R + 
Sbjct: 74  SRRGEQSTPGGGRASGP---RDGGPGGSRPADARGKRKQE 110


>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
          Length = 981

 Score = 24.0 bits (52), Expect = 8.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 5   RKREKSMPGADRNKGPRADRDKGPGANRDKGPRADRDK 42
            KR+K   G D++K  + DRD        +   +D + 
Sbjct: 206 AKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLES 243


>gnl|CDD|236572 PRK09566, nirA, ferredoxin-nitrite reductase; Reviewed.
          Length = 513

 Score = 23.8 bits (52), Expect = 9.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 48  RDKGPRANRDKG 59
           RD G RANR KG
Sbjct: 257 RDNGLRANRQKG 268



 Score = 23.8 bits (52), Expect = 9.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 56  RDKGPRANRDKG 67
           RD G RANR KG
Sbjct: 257 RDNGLRANRQKG 268


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.309    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,309,617
Number of extensions: 230701
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 48
Length of query: 71
Length of database: 10,937,602
Length adjustment: 41
Effective length of query: 30
Effective length of database: 9,119,088
Effective search space: 273572640
Effective search space used: 273572640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.4 bits)