RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1444
         (71 letters)



>1jmo_A HC-II, heparin cofactor II, HLS2, serin; serpin, thrombin,
          protease, inhibition, inhibitor, blood CLO; HET: TYS
          NDG NAG; 2.20A {Homo sapiens} SCOP: e.1.1.1 PDB:
          1jmj_A*
          Length = 480

 Score = 28.9 bits (65), Expect = 0.093
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 17 NKGPRADRDKGPGANRDKGPRADRDKGPKADRDKGPR 53
          +KGP    +KG    +   P+ ++           P 
Sbjct: 2  SKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLLPA 38



 Score = 26.6 bits (59), Expect = 0.66
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 25 DKGPGANRDKGPRADRDKGPKADRDKGPRANRDKGPR 61
           KGP    +KG    +   P+ ++      +    P 
Sbjct: 2  SKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLLPA 38



 Score = 24.6 bits (54), Expect = 3.0
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 33 DKGPRADRDKGPKADRDKGPRANRDKGPRANRDKGP 68
           KGP    +KG +  +   P+  +      +    P
Sbjct: 2  SKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLLP 37


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.8 bits (56), Expect = 1.5
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 5   RKREKSMPGADRNKGPRADRDKGPGANR 32
           RK  K+  G D+++ P ++R K   +NR
Sbjct: 394 RK-AKAPSGLDQSRIPFSER-KLKFSNR 419


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.309    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 939,290
Number of extensions: 40851
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 12
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.9 bits)