BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14440
(711 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NXP|A Chain A, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|B Chain B, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|C Chain C, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|D Chain D, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|E Chain E, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|F Chain F, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|G Chain G, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
pdb|2NXP|H Chain H, Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of
Tfiid
Length = 156
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 104/147 (70%)
Query: 128 EIGDLLSAYESEGDPNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGH 187
++ +LSAY +GDP YE+ Y LK FIE SLD ++ EL + YP+ VH Y+ELVYN H
Sbjct: 10 DVSAVLSAYNQQGDPTXYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHXYLELVYNQH 69
Query: 188 EHQATEMLHKHLMDHEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSL 247
E++A K D E +YQ+DLR LSS+TK++ + NE FR+++F++R+SRD+ L
Sbjct: 70 ENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHXKGNETXLDFRTSKFVLRISRDSYQL 129
Query: 248 LKRHLQEKKHTVLLNIVQEHLYFDMYE 274
LKRHLQEK++ + NIVQEHLY D+++
Sbjct: 130 LKRHLQEKQNNQIWNIVQEHLYIDIFD 156
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 135/285 (47%), Gaps = 15/285 (5%)
Query: 382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKS----------SDQLQ 431
TL V S D +A + +KLW+ Q L+ + S Q
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQ 357
Query: 432 DIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL 491
I DD V++ + RN + +TL GH VR ++FSPD + S S D T++LW+
Sbjct: 358 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 416
Query: 492 WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQ 551
+ L GH VW + FSP ASA D+ +LW + L+ GH S V V
Sbjct: 417 -QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVA 474
Query: 552 FHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVH 611
F P+ +A+ S D+T++LW+ G ++ LTGH + V ++FS G+ +ASA D V
Sbjct: 475 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 533
Query: 612 MWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+W+ N V + FS DG +AS+ D +VKLW+
Sbjct: 534 LWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 133/277 (48%), Gaps = 15/277 (5%)
Query: 390 VTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKS----------SDQLQDIEMECDD 439
V S D +A + +KLW+ Q L+ + S Q I DD
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 78
Query: 440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK 499
V++ + RN + +TL GH VR ++FSPD + S S D T++LW+ + L
Sbjct: 79 KTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT 136
Query: 500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYV 559
GH VW + FSP G ASA D+ +LW + L+ GH S V V F P+ +
Sbjct: 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTI 195
Query: 560 ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXX 619
A+ S D+T++LW+ G ++ LTGH + V ++FS G+ +ASA D V +W+ N
Sbjct: 196 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ 253
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
V + F DG +AS+ D +VKLW+
Sbjct: 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 135/285 (47%), Gaps = 15/285 (5%)
Query: 382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL----------Q 431
TL V S D +A + +KLW+ Q L+ + Q
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQ 275
Query: 432 DIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL 491
I DD V++ + RN + +TL GH V ++FSPD + S S D T++LW+
Sbjct: 276 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334
Query: 492 WRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQ 551
+ L GH VW + FSP G ASA D+ +LW + L+ GH S V V
Sbjct: 335 -QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVA 392
Query: 552 FHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVH 611
F P+ +A+ S D+T++LW+ G ++ LTGH + V+ ++FS + +ASA D V
Sbjct: 393 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451
Query: 612 MWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+W+ N VR + FS DG +AS+ D +VKLW+
Sbjct: 452 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Score = 125 bits (314), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 105/201 (52%), Gaps = 4/201 (1%)
Query: 456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY 515
L H VR ++FSPD + S S D T++LW+ + L GH VW + FSP G
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 516 YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT 575
ASA D+ +LW + L+ GH S V V F P+ +A+ S D+T++LW+
Sbjct: 71 TIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N 128
Query: 576 GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALC 635
G ++ LTGH + V+ ++FS G+ +ASA D V +W+ N V +
Sbjct: 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA 187
Query: 636 FSRDGNILASSGQDCSVKLWD 656
FS DG +AS+ D +VKLW+
Sbjct: 188 FSPDGQTIASASDDKTVKLWN 208
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 219 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSK 245
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 220
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 221 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 280
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 221
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDYSK 247
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSK 229
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 213
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 214 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 214
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 215 VKFSPNGKYILAATLDNTLKLWDYSK 240
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSK 229
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSK 223
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 192
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 193 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 252
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 253 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 193
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 194 VKFSPNGKYILAATLDNTLKLWDYSK 219
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L + S D I++W + GH + D+ +S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSK 226
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSK 223
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 142 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 201
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 202 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 261
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 202
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 203 VKFSPNGKYILAATLDNTLKLWDYSK 228
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSK 229
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 138 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 197
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 198 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 257
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 198
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 199 VKFSPNGKYILAATLDNTLKLWDYSK 224
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 136 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 195
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 196 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 255
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 196
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 197 VKFSPNGKYILAATLDNTLKLWDYSK 222
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 135/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%)
Query: 533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL 592
+Y + GH V V+F PN ++A+ S+D+ I++W G + ++GHK + +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 593 SFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSV 652
++S L SA D + +WD+S+ + V F+ N++ S D SV
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 653 KLWD 656
++WD
Sbjct: 135 RIWD 138
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 134/292 (45%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D ++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 200 FVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KLW
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D +KLWD++K
Sbjct: 201 VKFSPNGKYILAATLDNDLKLWDYSK 226
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%)
Query: 533 SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL 592
+Y + GH V V+F PN ++A+ S+D+ I++W G + ++GHK + +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 593 SFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSV 652
++S L SA D + +WD+S+ + V F+ N++ S D SV
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 653 KLWD 656
++WD
Sbjct: 135 RIWD 138
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKLW 655
D V++W+L DVV + NI+AS+ D ++KL+
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSK 226
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 135/291 (46%), Gaps = 17/291 (5%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQL--QDIEMECD 438
+TL + V+ + S + LA ++ IK+W K + S +L D+ D
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 439 ---------DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
D ++I D + + +TL GH V +F+P +L++S S D ++R+W +
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYS-DVD 548
+CL H PV + F+ G S+ +D + R+W T S L+ + + V
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 549 CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYAL--SFSVC-GRFLASAG 605
V+F PN Y+ + D T++LWD G ++ TGHK Y + +FSV G+++ S
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 606 GDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSG--QDCSVKL 654
D V++W+L DVV + NI+AS+ D ++KL
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG 514
TL GH V + FSP+ L S S D I++W + GH + D+ +S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 515 YYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCV 574
SA D+ ++W S L+ GH + V C F+P SN + +GS D ++R+WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 575 TGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXD-VVRA 633
TG ++ L H PV A+ F+ G + S+ DG +WD ++ + V
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 634 LCFSRDGNILASSGQDCSVKLWDFAK 659
+ FS +G + ++ D ++KLWD++K
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSK 226
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 20/240 (8%)
Query: 438 DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV 497
+D +++ D + RTL GH V+ +SF LL SCS D TI+LW + C+
Sbjct: 128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT 187
Query: 498 YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSN 557
GH H V + P+G + SA D+ ++W + + ++ F GH V V+ + +
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 558 YVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS--------------------VC 597
+A+ S+D+T+R+W T L H+ V +S++
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307
Query: 598 GRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
G FL S D + MWD+S + VR + F G + S D ++++WD+
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 131/307 (42%), Gaps = 31/307 (10%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKL-KAMKS-SDQLQDIEME-- 436
Y L R VT S++ ++ IK+W + +K +D +QDI +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 437 ------CD-DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
C D+ +++ D + E RT+ GH+ V +S P+ ++S S+D TI++W +
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDC 549
C+ + GH V ++ + G AS +D+ R+W + H V+C
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 281
Query: 550 VQFHPNSNYVA--------------------TGSSDRTIRLWDCVTGSHVRLLTGHKAPV 589
+ + P S+Y + +GS D+TI++WD TG + L GH V
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341
Query: 590 YALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQD 649
+ F G+F+ S D + +WD N V +L F + + + D
Sbjct: 342 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 401
Query: 650 CSVKLWD 656
+VK+W+
Sbjct: 402 QTVKVWE 408
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 15/194 (7%)
Query: 382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQ--LQDIEMECDD 439
T R+ V ++D +++A ++ +++W + ++ KA + ++ I +
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288
Query: 440 ILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK 499
I + +ET ++ G GP LLS S+D TI++W + CL+
Sbjct: 289 SYSSISEATGSETKKS--GKPGP-----------FLLSGSRDKTIKMWDVSTGMCLMTLV 335
Query: 500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYV 559
GH + V + F G + S D+ R+W + ++ H V + FH + YV
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 395
Query: 560 ATGSSDRTIRLWDC 573
TGS D+T+++W+C
Sbjct: 396 VTGSVDQTVKVWEC 409
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 582 LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGN 641
L+GH++PV + F + SA D + +WD D V+ + F G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 642 ILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYL 685
+LAS D ++KLWDF G E + H D SS++ +
Sbjct: 164 LLASCSADMTIKLWDFQ------GFECIRTMHGHDHNVSSVSIM 201
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-----LWRCLVVYKGHGHPVWDI 508
TL GH G V L+ S + +LLLS S+D T+ W L + +KGH H V D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 509 KFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI 568
+ G Y SA D+ RLW + + FVGH SDV V ++ + +GS D+TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSF---------SVCGRFLASAGGDGNVHMWDLSNXX 619
++W + G + L GH V + SV + SAG D V W+L+
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKXVKAWNLNQFQ 187
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
+ L S DG ++AS+G+D + LW+ A
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLA 226
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +R+ D ET + VGH+ V + S ++S S+D TI++W++ +CL
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG-QCLATL 144
Query: 499 KGHGHPVWDIKFSPH------GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQF 552
GH V ++ P+ SAG+D+ + W + + F+GH S+++ +
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 553 HPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG 608
P+ +A+ D I LW+ L+ V++L+FS +LA+A G
Sbjct: 205 SPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSPNRYWLAAATATG 259
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 8/207 (3%)
Query: 446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV 505
D++ R+ GH V+ + + D + LS S D T+RLW + + GH V
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN------SNYV 559
+ S D+ ++W T L +GH V V+ PN S +
Sbjct: 111 XSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 560 ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXX 619
+ +D+ ++ W+ GH + + L+ S G +ASAG DG + +W+L+
Sbjct: 170 ISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLA-AK 228
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASS 646
D V +L FS + LA++
Sbjct: 229 KAXYTLSAQDEVFSLAFSPNRYWLAAA 255
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 86/218 (39%), Gaps = 32/218 (14%)
Query: 387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKS-SDQLQDIEM----ECDDIL 441
+ V +I + S + G + IK+W++ Q L + +D + + + + DD
Sbjct: 107 KSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 442 VRIMDERNAETTRT-----------LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL 490
V I+ N + + +GH + L+ SPD +L+ S +D I LW+L
Sbjct: 167 VTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLA 226
Query: 491 LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL-------FVGH 543
+ V+ + FSP+ Y+ A+A + S P L F G+
Sbjct: 227 AKKAXYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVF----SLDPQYLVDDLRPEFAGY 281
Query: 544 YSDVD----CVQFHPNSNYVATGSSDRTIRLWDCVTGS 577
+ + + + + G +D IR+W T +
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 126/278 (45%), Gaps = 20/278 (7%)
Query: 390 VTCAEISEDVSILAVGFSESYIKLWSLVPQK-LKAMKS------SDQLQD--IEMECDDI 440
+TC + + + G ++ +K+WS V K L+ + S Q++D I D
Sbjct: 122 ITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR 179
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKG 500
+++ + E TL GH VR + R ++S S+D T+R+W + +CL V G
Sbjct: 180 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMG 237
Query: 501 HGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVA 560
H V +++ G S +D M ++W ++ L GH + V +QF + +V
Sbjct: 238 HVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVV 293
Query: 561 TGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
+GS D +IR+WD TG+ + LTGH++ + L S D V +WD+
Sbjct: 294 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC 351
Query: 621 XXXXXXXXDVVRAL-CFSRDGNILASSGQDCSVKLWDF 657
A+ C + N + +S D +VKLWD
Sbjct: 352 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 454 RTLVGHEGPV-RKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSP 512
+ L GH+ V L F +R ++S S DNT+++WS + +CL GH VW +
Sbjct: 112 KVLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 169
Query: 513 HGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD 572
+ S DR ++W ++ + GH S V C+ H V +GS D T+R+WD
Sbjct: 170 N--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWD 225
Query: 573 CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVR 632
TG + +L GH A V + + GR + S D V +WD + V
Sbjct: 226 IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283
Query: 633 ALCFSRDGNILASSGQDCSVKLWD 656
+L F DG + S D S+++WD
Sbjct: 284 SLQF--DGIHVVSGSLDTSIRVWD 305
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +V++ D TL GH V L F D ++S S D +IR+W + C+
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL 315
Query: 499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVG---HYSDVDCVQFHPN 555
GH ++ + S D ++W + L+ G H S V C+QF N
Sbjct: 316 TGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--N 371
Query: 556 SNYVATGSSDRTIRLWDCVTGSHVRLL 582
N+V T S D T++LWD TG +R L
Sbjct: 372 KNFVITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-----LWRCLVVYKGHGHPVWDI 508
TL GH G V L+ S + +LLLS S+D T+ W L + +KGH H V D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 509 KFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI 568
+ G Y SA D+ RLW + + FVGH SDV V ++ + +GS D+TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSF---------SVCGRFLASAGGDGNVHMWDLSNXX 619
++W + G + L GH V + SV + SAG D V W+L+
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLNQFQ 187
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
+ L S DG ++AS+G+D + LW+ A
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 8/176 (4%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +R+ D ET + VGH+ V + S+++S S+D TI++W++ +CL
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATL 144
Query: 499 KGHGHPVWDIKFSPH------GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQF 552
GH V ++ P+ SAG+D+M + W + + F+GH S+++ +
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 553 HPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG 608
P+ +A+ D I LW+ + L+ V++L+FS +LA+A G
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATG 259
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 8/207 (3%)
Query: 446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV 505
D++ R+ GH V+ + + D + LS S D T+RLW + + GH V
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN------SNYV 559
+ S D+ ++W T L +GH V V+ PN S +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 560 ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXX 619
+ +D+ ++ W+ GH + + L+ S G +ASAG DG + +W+L+
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA-AK 228
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASS 646
D V +L FS + LA++
Sbjct: 229 KAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAM----------------KSSDQL 430
+ V +I + S++ G + IK+W++ Q L + K+ D
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 431 QDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL 490
I +D +V+ + + +GH + L+ SPD +L+ S +D I LW+L
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 491 LWRCLVVYKGHGHPVWDIKFSPHGYYFASA 520
+ + V+ + FSP+ Y+ A+A
Sbjct: 227 AKKAMYTLSAQ-DEVFSLAFSPNRYWLAAA 255
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-----LWRCLVVYKGHGHPVWDI 508
TL GH G V L+ S + +LLLS S+D T+ W L + +KGH H V D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 509 KFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI 568
+ G Y SA D+ RLW + + FVGH SDV V ++ + +GS D+TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSF---------SVCGRFLASAGGDGNVHMWDLSNXX 619
++W + G + L GH V + SV + SAG D V W+L+
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLNQFQ 187
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
+ L S DG ++AS+G+D + LW+ A
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 8/176 (4%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +R+ D ET + VGH+ V + S+++S S+D TI++W++ +CL
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATL 144
Query: 499 KGHGHPVWDIKFSPH------GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQF 552
GH V ++ P+ SAG+D+M + W + + F+GH S+++ +
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 553 HPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG 608
P+ +A+ D I LW+ + L+ V++L+FS +LA+A G
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATG 259
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 8/207 (3%)
Query: 446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV 505
D++ R+ GH V+ + + D + LS S D T+RLW + + GH V
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN------SNYV 559
+ S D+ ++W T L +GH V V+ PN S +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 560 ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXX 619
+ +D+ ++ W+ GH + + L+ S G +ASAG DG + +W+L+
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA-AK 228
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASS 646
D V +L FS + LA++
Sbjct: 229 KAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 86/218 (39%), Gaps = 32/218 (14%)
Query: 387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAM----------------KSSDQL 430
+ V +I + S++ G + IK+W++ Q L + K+ D
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 431 QDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL 490
I +D +V+ + + +GH + L+ SPD +L+ S +D I LW+L
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 491 LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL-------FVGH 543
+ + V+ + FSP+ Y+ A+A + S P L F G+
Sbjct: 227 AKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVF----SLDPQYLVDDLRPEFAGY 281
Query: 544 YSDVD----CVQFHPNSNYVATGSSDRTIRLWDCVTGS 577
+ + + + + G +D IR+W +T +
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-----LWRCLVVYKGHGHPVWDI 508
TL GH G V L+ S + +LLLS S+D T+ W L + +KGH H V D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 509 KFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI 568
+ G Y SA D+ RLW + + FVGH SDV V ++ + +GS D+TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSF---------SVCGRFLASAGGDGNVHMWDLSNXX 619
++W + G + L GH V + SV + SAG D V W+L+
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLNQFQ 187
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
+ L S DG ++AS+G+D + LW+ A
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 8/176 (4%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +R+ D ET + VGH+ V + S+++S S+D TI++W++ +CL
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATL 144
Query: 499 KGHGHPVWDIKFSPH------GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQF 552
GH V ++ P+ SAG+D+M + W + + F+GH S+++ +
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 553 HPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG 608
P+ +A+ D I LW+ + L+ V++L+FS +LA+A G
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATG 259
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 8/207 (3%)
Query: 446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV 505
D++ R+ GH V+ + + D + LS S D T+RLW + + GH V
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN------SNYV 559
+ S D+ ++W T L +GH V V+ PN S +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 560 ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXX 619
+ +D+ ++ W+ GH + + L+ S G +ASAG DG + +W+L+
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA-AK 228
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASS 646
D V +L FS + LA++
Sbjct: 229 KAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 86/218 (39%), Gaps = 32/218 (14%)
Query: 387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAM----------------KSSDQL 430
+ V +I + S++ G + IK+W++ Q L + K+ D
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 431 QDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL 490
I +D +V+ + + +GH + L+ SPD +L+ S +D I LW+L
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 491 LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL-------FVGH 543
+ + V+ + FSP+ Y+ A+A + S P L F G+
Sbjct: 227 AKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVF----SLDPQYLVDDLRPEFAGY 281
Query: 544 YSDVD----CVQFHPNSNYVATGSSDRTIRLWDCVTGS 577
+ + + + + G +D IR+W +T +
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-----LWRCLVVYKGHGHPVWDI 508
TL GH G V L+ S + +LLLS S+D T+ W L + +KGH H V D
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 509 KFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI 568
+ G Y SA D+ RLW + + FVGH SDV V ++ + +GS D+TI
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSF---------SVCGRFLASAGGDGNVHMWDLSNXX 619
++W + G + L GH V + SV + SAG D V W+L+
Sbjct: 126 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLNQFQ 181
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
+ L S DG ++AS+G+D + LW+ A
Sbjct: 182 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 8/176 (4%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +R+ D ET + VGH+ V + S+++S S+D TI++W++ +CL
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATL 138
Query: 499 KGHGHPVWDIKFSPH------GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQF 552
GH V ++ P+ SAG+D+M + W + + F+GH S+++ +
Sbjct: 139 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 198
Query: 553 HPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG 608
P+ +A+ D I LW+ + L+ V++L+FS +LA+A G
Sbjct: 199 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATG 253
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 8/207 (3%)
Query: 446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV 505
D++ R+ GH V+ + + D + LS S D T+RLW + + GH V
Sbjct: 45 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 104
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN------SNYV 559
+ S D+ ++W T L +GH V V+ PN S +
Sbjct: 105 MSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 560 ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXX 619
+ +D+ ++ W+ GH + + L+ S G +ASAG DG + +W+L+
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA-AK 222
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASS 646
D V +L FS + LA++
Sbjct: 223 KAMYTLSAQDEVFSLAFSPNRYWLAAA 249
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 86/218 (39%), Gaps = 32/218 (14%)
Query: 387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAM----------------KSSDQL 430
+ V +I + S++ G + IK+W++ Q L + K+ D
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 160
Query: 431 QDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL 490
I +D +V+ + + +GH + L+ SPD +L+ S +D I LW+L
Sbjct: 161 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220
Query: 491 LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL-------FVGH 543
+ + V+ + FSP+ Y+ A+A + S P L F G+
Sbjct: 221 AKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVF----SLDPQYLVDDLRPEFAGY 275
Query: 544 YSDVD----CVQFHPNSNYVATGSSDRTIRLWDCVTGS 577
+ + + + + G +D IR+W +T +
Sbjct: 276 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 19/219 (8%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLL-----LWRCLVVYKGHGHPVWDI 508
TL GH G V L+ S + +LLLS S+D T+ W L + +KGH H V D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 509 KFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTI 568
+ G Y SA D+ RLW + + FVGH SDV V ++ + +GS D+TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 569 RLWDCVTGSHVRLLTGHKAPVYALSF---------SVCGRFLASAGGDGNVHMWDLSNXX 619
++W + G + L GH V + SV + SAG D V W+L+
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT---IISAGNDKMVKAWNLNQFQ 187
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
+ L S DG ++AS+G+D + LW+ A
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 8/176 (4%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +R+ D ET + VGH+ V + S+++S S+D TI++W++ +CL
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATL 144
Query: 499 KGHGHPVWDIKFSPH------GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQF 552
GH V ++ P+ SAG+D+M + W + + F+GH S+++ +
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 553 HPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG 608
P+ +A+ D I LW+ + L+ V++L+FS +LA+A G
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATG 259
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 8/207 (3%)
Query: 446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV 505
D++ R+ GH V+ + + D + LS S D T+RLW + + GH V
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN------SNYV 559
+ S D+ ++W T L +GH V V+ PN S +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 560 ATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXX 619
+ +D+ ++ W+ GH + + L+ S G +ASAG DG + +W+L+
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA-AK 228
Query: 620 XXXXXXXXXDVVRALCFSRDGNILASS 646
D V +L FS + LA++
Sbjct: 229 KAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 87/218 (39%), Gaps = 32/218 (14%)
Query: 387 RQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAM----------------KSSDQL 430
+ V +I + S++ G + IK+W++ Q L + K+ D
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 431 QDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL 490
I +D +V+ + + +GH + L+ SPD +L+ S +D I LW+L
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 491 LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL-------FVGH 543
+ + V+ + FSP+ Y+ A+A + S P L F G+
Sbjct: 227 AKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVF----SLDPQYLVDDLRPEFAGY 281
Query: 544 YSDVD----CVQFHPNSNYVATGSSDRTIRLWDCVTGS 577
+ + + + + + G +D IR+W +T +
Sbjct: 282 SAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 131/305 (42%), Gaps = 44/305 (14%)
Query: 330 KKTKSDPNAPPVD--RIPLPPL-KDSEKID-KLKALREATKRVTLGPESLPSIACYTLLN 385
K D NAPP R P + +D E I+ + R + +R+ E+ + C
Sbjct: 84 KNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYC----- 138
Query: 386 ARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECD------- 438
+ D + G ++ IK+W + K + + + ++ D
Sbjct: 139 ---------LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 189
Query: 439 --DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL------L 490
D VR+ D E TL+ H V L F + ++++CS+D +I +W +
Sbjct: 190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDIT 247
Query: 491 LWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCV 550
L R LV GH V + F Y SA DR ++W T + +R GH + C+
Sbjct: 248 LRRVLV---GHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 302
Query: 551 QFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNV 610
Q+ V +GSSD TIRLWD G+ +R+L GH+ V + F + + S DG +
Sbjct: 303 QYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKI 358
Query: 611 HMWDL 615
+WDL
Sbjct: 359 KVWDL 363
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 27/198 (13%)
Query: 471 DRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA 530
D ++S +DNTI++W C + GH V +++ + D R+W
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWD 199
Query: 531 TDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHV---RLLTGHKA 587
++ L + H V ++F N+ + T S DR+I +WD + + + R+L GH+A
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 588 PVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRAL--------CFSRD 639
V + F +++ SA GD + +W+ S + VR L C
Sbjct: 258 AVNVVDFD--DKYIVSASGDRTIKVWNTST----------CEFVRTLNGHKRGIACLQYR 305
Query: 640 GNILASSGQDCSVKLWDF 657
++ S D +++LWD
Sbjct: 306 DRLVVSGSSDNTIRLWDI 323
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
Query: 382 TLLNARQQVTCAEISEDVSILAVGFSESYIKLWSL-VPQKLKAMKSSDQL-QDIEMECDD 439
TL ++ + C + + ++ G S++ I+LW + L+ ++ ++L + I +
Sbjct: 291 TLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR 348
Query: 440 I-------------LVRIMDERNAETT---RTLVGHEGPVRKLSFSPDRSLLLSCSQDNT 483
I LV +D R T RTLV H G V +L F D ++S S D+T
Sbjct: 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT 406
Query: 484 IRLWSLL 490
I +W L
Sbjct: 407 ILIWDFL 413
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 11/216 (5%)
Query: 447 ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW 506
E N +R L GH G + F D ++ S S D T LW + + + GH V
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
+ +P F S D A+LW + F GH SD++ + F PN N ATGS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 567 TIRLWD------CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
T RL+D +T SH ++ G + ++SFS GR L + D N ++WD
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+ V L + DG +A+ D +K+W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 88/216 (40%), Gaps = 15/216 (6%)
Query: 451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP-----V 505
T RTL GH + + + D LL+S SQD L++W K H P V
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG-----KLIIWDSYTTNKVHAIPLRSSWV 100
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDSYHP----LRLFVGHYSDVDCVQFHPNSNYVAT 561
++P G Y A G D + ++ + R GH + C +F + N + T
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 562 GSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXX 621
S D T LWD TG TGH V +LS + R S D + +WD+
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 622 XXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
+ A+CF +GN A+ D + +L+D
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 9/176 (5%)
Query: 538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC 597
R GH + + + + +S + + S D + +WD T + V + + V +++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 598 GRFLASAGGDGNVHMWDL----SNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVK 653
G ++A G D +++L N + F D I+ SSG D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 654 LWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR 709
LWD + H+ D+ + SLA R + + A ++ R + R
Sbjct: 168 LWDI----ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 11/216 (5%)
Query: 447 ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW 506
E N +R L GH G + F D ++ S S D T LW + + + GH V
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
+ +P F S D A+LW + F GH SD++ + F PN N ATGS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 567 TIRLWD------CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
T RL+D +T SH ++ G + ++SFS GR L + D N ++WD
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+ V L + DG +A+ D +K+W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 88/216 (40%), Gaps = 15/216 (6%)
Query: 451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP-----V 505
T RTL GH + + + D LLLS SQD L++W K H P V
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDG-----KLIIWDSYTTNKVHAIPLRSSWV 100
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDSYHP----LRLFVGHYSDVDCVQFHPNSNYVAT 561
++P G Y A G D + ++ + R GH + C +F + N + T
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 562 GSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXX 621
S D T LWD TG TGH V +LS + R S D + +WD+
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 622 XXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
+ A+CF +GN A+ D + +L+D
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 11/216 (5%)
Query: 447 ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW 506
E N +R L GH G + F D ++ S S D T LW + + + GH V
Sbjct: 141 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVM 199
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
+ +P F S D A+LW + F GH SD++ + F PN N ATGS D
Sbjct: 200 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 259
Query: 567 TIRLWD------CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
T RL+D +T SH ++ G + ++SFS GR L + D N ++WD
Sbjct: 260 TCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 315
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+ V L + DG +A+ D +K+W+
Sbjct: 316 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 88/216 (40%), Gaps = 15/216 (6%)
Query: 451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP-----V 505
T RTL GH + + + D LL+S SQD L++W K H P V
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDG-----KLIIWDSYTTNKVHAIPLRSSWV 111
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDSYHP----LRLFVGHYSDVDCVQFHPNSNYVAT 561
++P G Y A G D + ++ + R GH + C +F + N + T
Sbjct: 112 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 170
Query: 562 GSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXX 621
S D T LWD TG TGH V +LS + R S D + +WD+
Sbjct: 171 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 622 XXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
+ A+CF +GN A+ D + +L+D
Sbjct: 231 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 266
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 9/176 (5%)
Query: 538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC 597
R GH + + + + +S + + S D + +WD T + V + + V +++
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 598 GRFLASAGGDGNVHMWDL----SNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVK 653
G ++A G D +++L N + F D I+ SSG D +
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 178
Query: 654 LWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR 709
LWD + H+ D+ + SLA R + + A ++ R + R
Sbjct: 179 LWDI----ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 230
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 11/216 (5%)
Query: 447 ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW 506
E N +R L GH G + F D ++ S S D T LW + + + GH V
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
+ +P F S D A+LW + F GH SD++ + F PN N ATGS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 567 TIRLWD------CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
T RL+D +T SH ++ G + ++SFS GR L + D N ++WD
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+ V L + DG +A+ D +K+W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 104/254 (40%), Gaps = 22/254 (8%)
Query: 420 KLKAMKSSDQLQDIEMECDD-ILVRIMDERN------AETTRTLVGHEGPVRKLSFSPDR 472
+ +A + +Q++D C D L +I + + T RTL GH + + + D
Sbjct: 8 RQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDS 67
Query: 473 SLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP-----VWDIKFSPHGYYFASAGHDRMAR 527
LL+S SQD L++W K H P V ++P G Y A G D +
Sbjct: 68 RLLVSASQDG-----KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 528 LWATDSYHP----LRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLT 583
++ + R GH + C +F + N + T S D T LWD TG T
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 584 GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNIL 643
GH V +LS + R S D + +WD+ + A+CF +GN
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 644 ASSGQDCSVKLWDF 657
A+ D + +L+D
Sbjct: 242 ATGSDDATCRLFDL 255
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 9/176 (5%)
Query: 538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC 597
R GH + + + + +S + + S D + +WD T + V + + V +++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 598 GRFLASAGGDGNVHMWDL----SNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVK 653
G ++A G D +++L N + F D I+ SSG D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 654 LWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLHLIFSRRNILLR 709
LWD + H+ D+ + SLA R + + A ++ R + R
Sbjct: 168 LWDI----ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 11/216 (5%)
Query: 447 ERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW 506
E N +R L GH G + F D ++ S S D T LW + + + GH V
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
+ +P F S D A+LW + F GH SD++ + F PN N ATGS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 567 TIRLWD------CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
T RL+D +T SH ++ G + ++SFS GR L + D N ++WD
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+ V L + DG +A+ D +K+W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 88/216 (40%), Gaps = 15/216 (6%)
Query: 451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP-----V 505
T RTL GH + + + D LLLS SQD L++W K H P V
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDG-----KLIIWDSYTTNKVHAIPLRSSWV 100
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDSYHP----LRLFVGHYSDVDCVQFHPNSNYVAT 561
++P G Y A G D + ++ + R GH + C +F + N + T
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVT 159
Query: 562 GSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXX 621
S D T LWD TG TGH V +LS + R S D + +WD+
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 622 XXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
+ A+CF +GN A+ D + +L+D
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 92/217 (42%), Gaps = 7/217 (3%)
Query: 446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV 505
D+ R L GH V + S D LS S D +RLW L + GH V
Sbjct: 416 DKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDV 475
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDS---YHPLRLFVGHYSDVDCVQFHPNS--NYVA 560
+ FS SA DR +LW T Y GH V CV+F PN+ +
Sbjct: 476 LSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535
Query: 561 TGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
+ S D+T+++W+ L GH V ++ S G AS G DG V +WDL+
Sbjct: 536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
V+ ALCFS + L ++ + +K+WD
Sbjct: 596 LYSLEANS-VIHALCFSPNRYWLCAA-TEHGIKIWDL 630
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 98/219 (44%), Gaps = 17/219 (7%)
Query: 455 TLVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSL--------LLWRCLVVYKGHGHPV 505
T+ H V ++ D + +++S S+D +I LW L + R L GH H V
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT---GHSHFV 433
Query: 506 WDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD 565
D+ S G + S D RLW + R FVGH DV V F ++ + + S D
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493
Query: 566 RTIRLWDCVTGSHVRLL---TGHKAPVYALSFS--VCGRFLASAGGDGNVHMWDLSNXXX 620
RTI+LW+ + + GH+ V + FS + SA D V +W+LSN
Sbjct: 494 RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAK 659
V + S DG++ AS G+D V LWD A+
Sbjct: 554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 9/180 (5%)
Query: 442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC--LVVYK 499
+R+ D +TR VGH V ++FS D ++S S+D TI+LW+ L C +
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEG 512
Query: 500 GHGHPVWD--IKFSPHGY--YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN 555
G GH W ++FSP+ SA D+ ++W + GH V V P+
Sbjct: 513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD 572
Query: 556 SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL 615
+ A+G D + LWD G + L + ++AL FS R+ A + + +WDL
Sbjct: 573 GSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFS-PNRYWLCAATEHGIKIWDL 630
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D V++ + N + TL GH G V ++ SPD SL S +D + LW L + L
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL 599
Query: 499 KGHGHPVWDIKFSPHGYYFASA 520
+ + + + FSP+ Y+ +A
Sbjct: 600 EAN-SVIHALCFSPNRYWLCAA 620
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 128/288 (44%), Gaps = 32/288 (11%)
Query: 345 PLPPLK---DSEKI-DKLKALREATKRVTLGPESLP---SIACYTLLNARQQVTCAEISE 397
P+PP DS+ + D LK ++ L +LP + + L+ V C + S
Sbjct: 17 PIPPFLLDLDSQSVPDALK--KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 74
Query: 398 DVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLV 457
D LA G +++ +++ + L A S D + D N T+ +
Sbjct: 75 DGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAAN------------KDPENLNTSSS-P 120
Query: 458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYF 517
+ +R + FSPD L + ++D IR+W + + +++ +GH ++ + + P G
Sbjct: 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 518 ASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTG 576
S DR R+W + L + V V P + Y+A GS DR +R+WD TG
Sbjct: 181 VSGSGDRTVRIWDLRTGQ-CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 577 SHVRLL-------TGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
V L TGHK VY++ F+ G+ + S D +V +W+L N
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 7/170 (4%)
Query: 508 IKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT 567
+ FSP G + A+ DR+ R+W ++ + + GH D+ + + P+ + + +GS DRT
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 568 IRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNX-------XX 620
+R+WD TG L+ G+++A+ D V +WD
Sbjct: 189 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 248
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEVN 670
D V ++ F+RDG + S D SVKLW+ +++ ++ N
Sbjct: 249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 103/257 (40%), Gaps = 40/257 (15%)
Query: 395 ISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEM------------ECDDILV 442
S D LA G + I++W + +K+ M QDI D V
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 443 RIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLW----SLLLWRCLVV 497
RI D R + + TL +G V ++ SP D + + S D +R+W L+ R
Sbjct: 190 RIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 248
Query: 498 YK---GHGHPVWDIKFSPHGYYFASAGHDRMARLW-------ATDSYHPLR-----LFVG 542
+ GH V+ + F+ G S DR +LW +DS P ++G
Sbjct: 249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 308
Query: 543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF-- 600
H V V N Y+ +GS DR + WD +G+ + +L GH+ V +++ +
Sbjct: 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 368
Query: 601 ----LASAGGDGNVHMW 613
A+ GD +W
Sbjct: 369 EYNVFATGSGDCKARIW 385
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 97/214 (45%), Gaps = 13/214 (6%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVY-------KGHGHPVW 506
TL GH G V +++ +P ++LS S+D TI +W L R Y +GH H V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT--RDETNYGIPQRALRGHSHFVS 90
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
D+ S G + S D RLW + R FVGH DV V F ++ + +GS D+
Sbjct: 91 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 150
Query: 567 TIRLWDCVTGSHVRLL-TGHKAPVYALSFS--VCGRFLASAGGDGNVHMWDLSNXXXXXX 623
TI+LW+ + + H V + FS + S G D V +W+L+N
Sbjct: 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 210
Query: 624 XXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
+ + S DG++ AS G+D LWD
Sbjct: 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 7/181 (3%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +R+ D TTR VGH V ++FS D ++S S+D TI+LW+ L C
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCKYTV 165
Query: 499 KGHGHPVW--DIKFSPHGY--YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP 554
+ H W ++FSP+ S G D++ ++W + +GH ++ V P
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 225
Query: 555 NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD 614
+ + A+G D LWD G H+ L G + AL FS +L +A G ++ +WD
Sbjct: 226 DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATGP-SIKIWD 283
Query: 615 L 615
L
Sbjct: 284 L 284
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 97/214 (45%), Gaps = 13/214 (6%)
Query: 455 TLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVY-------KGHGHPVW 506
TL GH G V +++ +P ++LS S+D TI +W L R Y +GH H V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT--RDETNYGIPQRALRGHSHFVS 67
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
D+ S G + S D RLW + R FVGH DV V F ++ + +GS D+
Sbjct: 68 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 127
Query: 567 TIRLWDCVTGSHVRLL-TGHKAPVYALSFS--VCGRFLASAGGDGNVHMWDLSNXXXXXX 623
TI+LW+ + + H V + FS + S G D V +W+L+N
Sbjct: 128 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 187
Query: 624 XXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
+ + S DG++ AS G+D LWD
Sbjct: 188 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 112/241 (46%), Gaps = 16/241 (6%)
Query: 454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH 513
R L GH V + S D LS S D T+RLW L + GH V + FS
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 514 GYYFASAGHDRMARLWATDSYHPLRLFVGHYSD-VDCVQFHPNSN--YVATGSSDRTIRL 570
S D+ +LW T + +S+ V CV+F PNS+ + + D+ +++
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 571 WDCVTGSHVRLLT---GHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXX 627
W+ ++ +L T GH + ++ S G AS G DG +WDL N
Sbjct: 177 WNL---ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL-NEGKHLYTLDG 232
Query: 628 XDVVRALCFSRDGNIL-ASSGQDCSVKLWDFAK--LSDEVGTEEVNLSHSAD-IKNSSLA 683
D++ ALCFS + L A++G S+K+WD + DE+ E ++ S A+ + +SLA
Sbjct: 233 GDIINALCFSPNRYWLCAATGP--SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 290
Query: 684 Y 684
+
Sbjct: 291 W 291
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 7/181 (3%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +R+ D TTR VGH V ++FS D ++S S+D TI+LW+ L C
Sbjct: 84 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCKYTV 142
Query: 499 KGHGHPVW--DIKFSPHGY--YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP 554
+ H W ++FSP+ S G D++ ++W + +GH ++ V P
Sbjct: 143 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 202
Query: 555 NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWD 614
+ + A+G D LWD G H+ L G + AL FS +L +A G ++ +WD
Sbjct: 203 DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATGP-SIKIWD 260
Query: 615 L 615
L
Sbjct: 261 L 261
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 4/187 (2%)
Query: 454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH 513
R L GH V ++ S + + +S S D+++RLW+L +C + GH V + FSP
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 514 GYYFASAGHDRMARLWATDSYHPLRLFVGHYSD-VDCVQFHP--NSNYVATGSSDRTIRL 570
S G D R+W L G ++D V CV+F P ++ + +G D +++
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 571 WDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDV 630
WD TG V L GH V +++ S G AS+ DG +WDL+
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAP- 239
Query: 631 VRALCFS 637
+ +CFS
Sbjct: 240 INQICFS 246
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 5/165 (3%)
Query: 499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY 558
+GH V D+ S +G + SA D RLW + F+GH DV V F P++
Sbjct: 64 EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQ 123
Query: 559 VATGSSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFS--VCGRFLASAGGDGNVHMWD 614
+ +G D +R+W+ V G + L+ H V + FS + + S G D V +WD
Sbjct: 124 IVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 615 LSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAK 659
L+ + V ++ S DG++ ASS +D +LWD K
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 14/229 (6%)
Query: 442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGH 501
+R+ + +N + +GH V ++FSPD ++S +DN +R+W++ C+
Sbjct: 91 LRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG-ECMHTLSRG 149
Query: 502 GHPVW--DIKFSPH--GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSN 557
H W ++FSP S G D + ++W + + GH + V V P+ +
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 558 YVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
A+ D RLWD G + + AP+ + FS R+ A + + ++DL N
Sbjct: 210 LCASSDKDGVARLWDLTKGEALSEMAA-GAPINQICFSP-NRYWMCAATEKGIRIFDLEN 267
Query: 618 XXXXXXXXXXXDVVR-------ALCFSRDGNILASSGQDCSVKLWDFAK 659
+ ++ +S DG+ L S D +++W ++
Sbjct: 268 KDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSE 316
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS 595
P R GH + V V N N+ + S D ++RLW+ G GH V +++FS
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 596 VCGRFLASAGGDGNVHMWDLSNXXX-XXXXXXXXDVVRALCF--SRDGNILASSGQDCSV 652
R + S G D + +W++ D V + F S D ++ S G D V
Sbjct: 119 PDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 653 KLWDFA 658
K+WD A
Sbjct: 179 KVWDLA 184
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 542 GHYSDVDCVQFHPNSNYVATGSSDRTIRLW---------DCVTGSHVRLLTGHKAPVYAL 592
G + + C Q + V + S D+T+ W +C G R L GH A V +
Sbjct: 14 GWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDV 73
Query: 593 SFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSV 652
+ S G F SA D ++ +W+L N V ++ FS D + S G+D ++
Sbjct: 74 ALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNAL 133
Query: 653 KLWD 656
++W+
Sbjct: 134 RVWN 137
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D LV++ D L GH V ++ SPD SL S +D RLW L L
Sbjct: 175 DNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM 234
Query: 499 KGHGHPVWDIKFSPHGYYFASA 520
G P+ I FSP+ Y+ +A
Sbjct: 235 AA-GAPINQICFSPNRYWMCAA 255
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 16/116 (13%)
Query: 390 VTCAEISEDVSILAVGFSESYIKLWSLVP-QKLKAMKSSDQLQDIEME--------CDDI 440
VT +S D S+ A + +LW L + L M + + I +
Sbjct: 199 VTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEK 258
Query: 441 LVRIMDERNAETTRTLV-GHEGPVR------KLSFSPDRSLLLSCSQDNTIRLWSL 489
+RI D N + L H+G + +++S D S L S DN IR+W +
Sbjct: 259 GIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 4/214 (1%)
Query: 446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV 505
+E A +++ H + SF+ +L+ S D T LW + + L + GHG V
Sbjct: 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 199
Query: 506 WDIKFSPH--GYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGS 563
+ +P G F S G D+ A +W S ++ F H SDV+ V+++P+ + A+GS
Sbjct: 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
Query: 564 SDRTIRLWDCVTGSHVRLLTGHKAPVYALS--FSVCGRFLASAGGDGNVHMWDLSNXXXX 621
D T RL+D V + + A S FS+ GR L + D +++WD+
Sbjct: 260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 319
Query: 622 XXXXXXXDVVRALCFSRDGNILASSGQDCSVKLW 655
+ V L S DG S D ++++W
Sbjct: 320 SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 91/248 (36%), Gaps = 30/248 (12%)
Query: 429 QLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWS 488
+L D+E+ V + + +T RTL GH V + + D+ ++S SQD +
Sbjct: 33 KLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKV---- 88
Query: 489 LLLWRCLVVYKGHGHP-----VWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRL---- 539
++W K H V ++P G A G D S +PL
Sbjct: 89 -IVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC------SVYPLTFDKNE 141
Query: 540 --------FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYA 591
H + + F + + T S D T LWD +G ++ GH A V
Sbjct: 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLC 201
Query: 592 LSF--SVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQD 649
L S G S G D +WD+ + V ++ + G+ AS D
Sbjct: 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD 261
Query: 650 CSVKLWDF 657
+ +L+D
Sbjct: 262 ATCRLYDL 269
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 2/130 (1%)
Query: 444 IMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHG- 502
+ D R+ + + HE V + + P S S D T RL+ L R + +Y
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI 283
Query: 503 -HPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVAT 561
+ FS G + +D +W + + GH + V ++ P+ +
Sbjct: 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 562 GSSDRTIRLW 571
GS D T+R+W
Sbjct: 344 GSWDHTLRVW 353
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 438 DDILVRIMDERNAETTRTLVGHEGPVRKLS---FSPDRSLLLSCSQDNTIRLWSLLLWRC 494
DD R+ D R A+ + E + S FS LL + D TI +W +L
Sbjct: 260 DDATCRLYDLR-ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318
Query: 495 LVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWA 530
+ + GH + V ++ SP G F S D R+WA
Sbjct: 319 VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 5/189 (2%)
Query: 433 IEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL- 491
I + DD +R+ + E H +R ++ P + +LS S D T++LW+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 492 WRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHP-LRLFVGHYSDVDC 549
W ++GH H V + F+P FAS DR ++W+ P L G V+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 550 VQFHP--NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
V ++P + Y+ T S D TI++WD T S V L GH + V F + S D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 608 GNVHMWDLS 616
G + +W+ S
Sbjct: 250 GTLKIWNSS 258
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
Query: 437 CDDILVRIMDERNAETTRTLV-GHEGPVRKLSFSP--DRSLLLSCSQDNTIRLWSLLLWR 493
C D V++ + TL G E V + + P D+ +++ S D TI++W
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 494 CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFH 553
C+ +GH V F P S D ++W + +Y + C+ H
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH 279
Query: 554 PNS--NYVATG 562
P NY+A+G
Sbjct: 280 PTGRKNYIASG 290
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 44/111 (39%)
Query: 547 VDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG 606
V + FHP +V T + +W+ T VR + + PV A F ++
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 607 DGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
D + +++ + D +R++ + S D +VKLW++
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 2/154 (1%)
Query: 508 IKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT 567
I F P + + + +W ++ +R + V +F N++ GS D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 568 IRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXX 627
IR+++ TG V H + +++ ++ S D V +W+ N
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
Query: 628 XD-VVRALCFS-RDGNILASSGQDCSVKLWDFAK 659
+ V + F+ +D + AS D +VK+W +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 5/201 (2%)
Query: 421 LKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQ 480
++A K + I + DD +R+ + E H +R ++ P + +LS S
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 481 DNTIRLWSLLL-WRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHP-L 537
D T++LW+ W ++GH H V + F+P FAS DR ++W+ P
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 538 RLFVGHYSDVDCVQFHP--NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS 595
L G V+ V ++P + Y+ T S D TI++WD T S V L GH + V F
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 596 VCGRFLASAGGDGNVHMWDLS 616
+ S DG + +W+ S
Sbjct: 238 PTLPIIISGSEDGTLKIWNSS 258
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
Query: 437 CDDILVRIMDERNAETTRTLV-GHEGPVRKLSFSP--DRSLLLSCSQDNTIRLWSLLLWR 493
C D V++ + TL G E V + + P D+ +++ S D TI++W
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 494 CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFH 553
C+ +GH V F P S D ++W + +Y + C+ H
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH 279
Query: 554 PNS--NYVATG 562
P NY+A+G
Sbjct: 280 PTGRKNYIASG 290
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 46/120 (38%)
Query: 538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC 597
+ F V + FHP +V T + LW+ T VR + + PV A F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 598 GRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
++ D + +++ + D +R++ + S D +VKLW++
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 2/154 (1%)
Query: 508 IKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT 567
I F P + + + LW ++ +R + V +F N++ GS D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 568 IRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXX 627
IR+++ TG V H + +++ ++ S D V +W+ N
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
Query: 628 XD-VVRALCFS-RDGNILASSGQDCSVKLWDFAK 659
+ V + F+ +D + AS D +VK+W +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 5/201 (2%)
Query: 421 LKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQ 480
++A K + I + DD +R+ + E H +R ++ P + +LS S
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 481 DNTIRLWSLLL-WRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHP-L 537
D T++LW+ W ++GH H V + F+P FAS DR ++W+ P
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 538 RLFVGHYSDVDCVQFHP--NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFS 595
L G V+ V ++P + Y+ T S D TI++WD T S V L GH + V F
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 596 VCGRFLASAGGDGNVHMWDLS 616
+ S DG + +W+ S
Sbjct: 238 PTLPIIISGSEDGTLKIWNSS 258
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
Query: 437 CDDILVRIMDERNAETTRTLV-GHEGPVRKLSFSP--DRSLLLSCSQDNTIRLWSLLLWR 493
C D V++ + TL G E V + + P D+ +++ S D TI++W
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 494 CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFH 553
C+ +GH V F P S D ++W + +Y + C+ H
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH 279
Query: 554 PNS--NYVATG 562
P NY+A+G
Sbjct: 280 PTGRKNYIASG 290
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 46/120 (38%)
Query: 538 RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC 597
+ F V + FHP +V T + LW+ T VR + + PV A F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 598 GRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
++ D + +++ + D +R++ + S D +VKLW++
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 2/154 (1%)
Query: 508 IKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT 567
I F P + + + LW ++ +R + V +F N++ GS D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 568 IRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXX 627
IR+++ TG V H + +++ ++ S D V +W+ N
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
Query: 628 XD-VVRALCFS-RDGNILASSGQDCSVKLWDFAK 659
+ V + F+ +D + AS D +VK+W +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 37/225 (16%)
Query: 412 KLWSL-VPQKLKAMKSSD-QLQDIEMECDDI-LVRIMDERNAETTRTLVGHEGPVRKLSF 468
K+WS Q + A S+D +++ + ++ DD L+ ++DE H+ +R +++
Sbjct: 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDE---------TAHKKAIRSVAW 66
Query: 469 SPDRSLLLSCSQDNTIRLWS-------LLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAG 521
P SLL + S D+T+ +W+ L + +GH + V + +S GYY A+
Sbjct: 67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS 126
Query: 522 HDRMARLWATD----SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRL------- 570
D+ +W TD Y + + H DV V +HP+ +A+ S D T+R+
Sbjct: 127 RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186
Query: 571 WDCVTGSHVRLLTGHKAPVYALSFSVC-GRF-LASAGGDGNVHMW 613
W+CV +L GH+ V++ F G F L S D V +W
Sbjct: 187 WECVA-----VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 552 FHPNSNYVATGSSDRTIRL----WDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
F + +ATGS+DR I+L +D T V T HK + ++++ LA+ D
Sbjct: 20 FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79
Query: 608 GNVHMWDLSNXXXXXXXXXXXDV-------VRALCFSRDGNILASSGQDCSVKLWDFAKL 660
V +W + V+ + +S DG LA+ +D SV +W+ +
Sbjct: 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139
Query: 661 SDEVGTEEVNLSHSADIKN 679
+E V HS D+K+
Sbjct: 140 GEEYECISVLQEHSQDVKH 158
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 439 DILVRIMDE--RNAETTRTLVGHEGPVRKLSFSPDRSLLLSCS--QDNTIRLWSLL---- 490
D VRI + + E L GHEG V F + CS D+T+R+W +
Sbjct: 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233
Query: 491 ----LWRCLVVY-KGHGHPVWDIKFSPHGYYFASAGHD 523
W C + H V+++ + +G AS G D
Sbjct: 234 DDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGAD 270
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 5/189 (2%)
Query: 433 IEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL- 491
I + DD +R+ + E H +R ++ P + +LS S D T++LW+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 492 WRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDSYHP-LRLFVGHYSDVDC 549
W ++GH H V + F+P FAS DR ++W+ P L G V+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 550 VQFHP--NSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
V ++P + Y+ T S D TI++WD T S V L GH + V F + S D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 608 GNVHMWDLS 616
G + +W+ S
Sbjct: 250 GTLKIWNSS 258
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
Query: 437 CDDILVRIMDERNAETTRTLV-GHEGPVRKLSFSP--DRSLLLSCSQDNTIRLWSLLLWR 493
C D V++ + TL G E V + + P D+ +++ S D TI++W
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219
Query: 494 CLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFH 553
C+ +GH V F P S D ++W + +Y + C+ H
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH 279
Query: 554 PNS--NYVATG 562
P NY+A+G
Sbjct: 280 PTGRKNYIASG 290
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 44/111 (39%)
Query: 547 VDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG 606
V + FHP +V T + LW+ T VR + + PV A F ++
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 607 DGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
D + +++ + D +R++ + S D +VKLW++
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 2/154 (1%)
Query: 508 IKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT 567
I F P + + + LW ++ +R + V +F N++ GS D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 568 IRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXX 627
IR+++ TG V H + +++ ++ S D V +W+ N
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
Query: 628 XD-VVRALCFS-RDGNILASSGQDCSVKLWDFAK 659
+ V + F+ +D + AS D +VK+W +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 125/303 (41%), Gaps = 32/303 (10%)
Query: 397 EDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQD--IEMECDDILVRIMDERNAETTR 454
E++ IL ++ ++ + + + ++ + Q +D + DD ++R+ D N +
Sbjct: 97 ENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLL 156
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPV--WDIKFSP 512
L GH+G V L ++ +L+S S D T+R+W + C V++GH V DI
Sbjct: 157 QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 513 HGYYFASAGHDRMARLW-----------ATDSYHPLRL--------FVG----HYSDVDC 549
+ Y + D +W + +PL FVG H + V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 550 VQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGN 609
V H N V +GS D T+ +WD + +L+GH +Y+ + + SA D
Sbjct: 276 VSGH--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333
Query: 610 VHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEVGTEEV 669
+ +WDL N +V L S L S+ D S++ WD S +
Sbjct: 334 IRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT 391
Query: 670 NLS 672
NLS
Sbjct: 392 NLS 394
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 23/233 (9%)
Query: 447 ERNAETTRTLVGHEGPVRKLSFSPDR-SLLLSCSQDNTIRLWSLLLWRCLVVY-----KG 500
+ N +R L GH+G + PD+ + L++ S D T LW + + + ++ G
Sbjct: 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203
Query: 501 HGHPVWDIKF-SPHGYYFASAGHDRMARLWATD-SYHPLRLFVGHYSDVDCVQFHPNSNY 558
H V + S + F S D RLW + +R + GH D++ V+F P+
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR 263
Query: 559 VATGSSDRTIRLWDCVTGSHVRLLTGHKAP---------VYALSFSVCGRFLASAGGDGN 609
TGS D T RL+D TG +++ ++ P V +++FS+ GR L + +G+
Sbjct: 264 FGTGSDDGTCRLFDMRTGHQLQVY--NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321
Query: 610 VHMWD--LSNXXXXXXXXXXXDVVRALC--FSRDGNILASSGQDCSVKLWDFA 658
++WD L+ R C S DG+ L + D ++K+W F+
Sbjct: 322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Query: 454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH 513
RTL GH G V L ++P+++ ++S SQD + +W+ L + K H V + F+P+
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 514 GYYFASAGHDRMARLWA------TDSYHPL-RLFVGHYSDVDCVQFHPNS-NYVATGSSD 565
G A G D ++ D P+ R+ GH Q+ P+ + TGS D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 566 RTIRLWDCVTGSHVRLL-----TGHKAPVYALSF-SVCGRFLASAGGDGNVHMWDL 615
+T LWD TG + + +GH A V +LS S+ S D V +WDL
Sbjct: 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 13/148 (8%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +R+ D R T + VGH+ V ++FSPD +LS + I+LW++L
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 499 KGHGHPVW------------DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSD 546
+ H W K P YFAS G D ++W T+ + F H S+
Sbjct: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESN 215
Query: 547 VDCVQFHPNSNYVATGSSDRTIRLWDCV 574
V+ + PN Y+ATG D+ + +WD +
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIWDIL 243
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 16/216 (7%)
Query: 454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH 513
+ L GH V L+ S + +S S D T+RLW L + GH V+ + FSP
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 514 GYYFASAGHDRMARLWAT--DSYHPLRLFVGHYSDVDCVQF----------HPNSNYVAT 561
SAG +R +LW + H V CV++ P + Y A+
Sbjct: 130 NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189
Query: 562 GSSDRTIRLWDCVTGSHVRL-LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXX 620
D +++W+ T +R H++ V LS S G+++A+ G D + +WD+ N
Sbjct: 190 VGWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247
Query: 621 XXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+ + F+ +A G D VK+++
Sbjct: 248 PQREFDAGSTINQIAFNPKLQWVA-VGTDQGVKIFN 282
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 24/212 (11%)
Query: 471 DRSLLLSCSQDNTIRLWSLLLWRCLVVY-------KGHGHPVWDIKFSPHGYYFASAGHD 523
D +L+S S+D T+ +W L + GH H V D+ S + S+ D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 524 RMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLW----DCVTGSHV 579
+ RLW + + FVGH S+V V F P++ + + ++R I+LW +C S
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157
Query: 580 RLLTGHKAPVYALSFSVCGR----------FLASAGGDGNVHMWDLSNXXXXXXXXXXXD 629
+ H V + +S + + AS G DG + +W+ +N
Sbjct: 158 K--ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES 214
Query: 630 VVRALCFSRDGNILASSGQDCSVKLWDFAKLS 661
V L S +G +A+ G+D + +WD L+
Sbjct: 215 NVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 106/261 (40%), Gaps = 30/261 (11%)
Query: 437 CDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV 496
DD +R+ D N + L GH+G V L ++ +L+S S D T+R+W + C
Sbjct: 139 ADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTH 197
Query: 497 VYKGHGHPV--WDIKFSPHGYYFASAGHDRMARLW-----------ATDSYHPLRL---- 539
V++GH V DI + Y + D +W + +PL
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 540 ----FVG----HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYA 591
FVG H + V V H N V +GS D T+ +WD + +L+GH +Y+
Sbjct: 258 ENPYFVGVLRGHXASVRTVSGH--GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYS 315
Query: 592 LSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCS 651
+ + SA D + +WDL N +V L S L S+ D S
Sbjct: 316 TIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGS 373
Query: 652 VKLWDFAKLSDEVGTEEVNLS 672
++ WD S + NLS
Sbjct: 374 IRGWDANDYSRKFSYHHTNLS 394
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 111/279 (39%), Gaps = 35/279 (12%)
Query: 405 GFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVR 464
GF+ +KL QK + D+L+ +E IL + + TL GH V
Sbjct: 70 GFNSLNLKL----SQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHXTSVI 125
Query: 465 K-LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHD 523
L F + +++ + D IR++ + + L+ GH VW +K++ HG S D
Sbjct: 126 TCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVSGSTD 182
Query: 524 RMARLWATDSYHPLRLFVGHYSDVDCVQF--HPNSNYVATGSSDRTIRLWDCVTGS---- 577
R R+W +F GH S V C+ + N Y+ TGS D T+ +W S
Sbjct: 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 242
Query: 578 -------------------HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNX 618
V +L GH A V +S G + S D + +WD++
Sbjct: 243 HGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGH--GNIVVSGSYDNTLIVWDVAQX 300
Query: 619 XXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
D + + + + S+ D ++++WD
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Query: 529 WATDSYHPLRLFV-GHYSDV-DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHK 586
W + P R + GH + V C+QF NYV TG+ D+ IR++D + + L+GH
Sbjct: 105 WYNPKFVPQRTTLRGHXTSVITCLQFE--DNYVITGADDKXIRVYDSINKKFLLQLSGHD 162
Query: 587 APVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNI--LA 644
V+AL ++ G L S D V +WD+ VR L NI +
Sbjct: 163 GGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221
Query: 645 SSGQDCSVKLWDFAKLS 661
+ +D ++ +W K S
Sbjct: 222 TGSRDNTLHVWKLPKES 238
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL--WRCLVVYKGHGHPVWDIKFSPHGY 515
GH+ VRK+++SP + L S S D T +W + C+ +GH + V + ++P G
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 516 YFASAGHDRMARLWAT---DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRL-- 570
A+ D+ +W D Y + + H DV V +HP+ +A+ S D T++L
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 571 -----WDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW 613
W C L GH++ V++L+F G+ LAS D V +W
Sbjct: 179 EEEDDWVCCA-----TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 20/205 (9%)
Query: 466 LSFSPDRSLLLSCSQDNTIRLWSLL--LWRCL-VVYKGHGHPVWDIKFSPHGYYFASAGH 522
L+++P +LL SC D IR+W W C V+ +GH V + +SP G Y ASA
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 523 DRMARLWAT--DSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLW--------D 572
D +W D + + GH ++V V + P+ N +AT S D+++ +W +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 573 CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW--DLSNXXXXXXXXXXXDV 630
CV+ +L H V + + LASA D V ++ + +
Sbjct: 142 CVS-----VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST 196
Query: 631 VRALCFSRDGNILASSGQDCSVKLW 655
V +L F G LAS D +V++W
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 451 ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL---LLWRCLVVYKGHGHPVWD 507
E TL GHE V+ ++++P +LL +CS+D ++ +W + + C+ V H V
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155
Query: 508 IKFSPHGYYFASAGHDRMARLW--ATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSD 565
+ + P ASA +D +L+ D + GH S V + F P+ +A+ S D
Sbjct: 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215
Query: 566 RTIRLWD----------CVTGSH-----VRLLTG-HKAPVYALSFSVCGRFLASAGGDGN 609
RT+R+W +GS + L+G H +Y +++ LA+A GD
Sbjct: 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA 275
Query: 610 VHM 612
+ +
Sbjct: 276 IRV 278
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 18/127 (14%)
Query: 502 GHP---VWDIKFSPHGYYFASAGHDRMARLWAT--DSYHPLRLFV-GHYSDVDCVQFHPN 555
HP W + ++P G AS G DR R+W T DS+ + GH V V + P
Sbjct: 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC 72
Query: 556 SNYVATGSSDRTIRLW-------DCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDG 608
NY+A+ S D T +W +CVT L GH+ V +++++ G LA+ D
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFECVT-----TLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 609 NVHMWDL 615
+V +W++
Sbjct: 128 SVWVWEV 134
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 446 DERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLL-------------- 491
+E + TL GHE V L+F P L SCS D T+R+W L
Sbjct: 180 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239
Query: 492 -WRCLVVYKG-HGHPVWDIKFSPHGYYFASAGHDRMARLWA----TDSYHPL-----RLF 540
W+C+ G H ++DI + A+A D R++ +D P L
Sbjct: 240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH 299
Query: 541 VGHYSDVDCVQFHPNS-NYVATGSSDRTIRLW 571
H DV+CV ++P +A+ S D + W
Sbjct: 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 550 VQFHPNSNYVATGSSDRTIRLWDCVTGSHVR---LLTGHKAPVYALSFSVCGRFLASAGG 606
+ ++P +A+ DR IR+W S + L GH+ V +++S CG +LASA
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 607 DGNVHMW--DLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDEV 664
D +W + + + V+++ ++ GN+LA+ +D SV +W+ + DE
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE-EDEY 140
Query: 665 GTEEVNLSHSADIKN 679
V SH+ D+K+
Sbjct: 141 ECVSVLNSHTQDVKH 155
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 32/235 (13%)
Query: 456 LVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSL-------LLWRCLVVYKGHGHPVWD 507
L GH+ LS++P+ LLS S D+TI LW + + ++ GH V D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 508 IKFS-PHGYYFASAGHDRMARLWAT---DSYHPLRLFVGHYSDVDCVQFHPNSNYV-ATG 562
+ + H F S D+ +W T ++ P H ++V+C+ F+P S ++ ATG
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 563 SSDRTIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNXX 619
S+D+T+ LWD + ++L HK ++ + +S LAS+G D +H+WDLS
Sbjct: 297 SADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355
Query: 620 XXXXXXXXXDVVRALCFSRDGN---------------ILASSGQDCSVKLWDFAK 659
D L F G+ I+ S +D +++W A+
Sbjct: 356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 32/235 (13%)
Query: 456 LVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSL-------LLWRCLVVYKGHGHPVWD 507
L GH+ LS++P+ LLS S D+TI LW + + ++ GH V D
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 508 IKFS-PHGYYFASAGHDRMARLWAT---DSYHPLRLFVGHYSDVDCVQFHPNSNYV-ATG 562
+ + H F S D+ +W T ++ P H ++V+C+ F+P S ++ ATG
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 563 SSDRTIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNXX 619
S+D+T+ LWD + ++L HK ++ + +S LAS+G D +H+WDLS
Sbjct: 299 SADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 357
Query: 620 XXXXXXXXXDVVRALCFSRDGN---------------ILASSGQDCSVKLWDFAK 659
D L F G+ I+ S +D +++W A+
Sbjct: 358 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 412
>pdb|2J4B|A Chain A, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|B Chain B, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|C Chain C, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|D Chain D, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|E Chain E, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
Length = 138
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 146 EDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPH 205
E +Y LK +IE+SLD++K +L +LYP+ +H+Y +L+ +A E K+ DH
Sbjct: 9 ETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK 68
Query: 206 YQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKHTVLLNIVQ 265
E++++ S+ I N A TF+++++ + M R LL L+E+ T +L I+
Sbjct: 69 -SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILN 127
Query: 266 EHLYFDMYEG 275
+HL +Y G
Sbjct: 128 QHLDIKVYVG 137
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 32/235 (13%)
Query: 456 LVGHEGPVRKLSFSPD-RSLLLSCSQDNTIRLWSL-------LLWRCLVVYKGHGHPVWD 507
L GH+ LS++P+ LLS S D+TI LW + + ++ GH V D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 508 IKFS-PHGYYFASAGHDRMARLWAT---DSYHPLRLFVGHYSDVDCVQFHPNSNYV-ATG 562
+ + H F S D+ +W T ++ P H ++V+C+ F+P S ++ ATG
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 563 SSDRTIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNXX 619
S+D+T+ LWD + ++L HK ++ + +S LAS+G D +H+WDLS
Sbjct: 301 SADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 359
Query: 620 XXXXXXXXXDVVRALCFSRDGN---------------ILASSGQDCSVKLWDFAK 659
D L F G+ I+ S +D +++W A+
Sbjct: 360 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 414
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 496 VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN 555
+V + H V+ FS G AS G D+ +++ ++ L H +V C F +
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 675
Query: 556 SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGR--FLASAGGDGNVHMW 613
+Y+AT S+D+ +++WD TG V H V F+ LA+ D + +W
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 614 DLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
DL+ + V FS D +LAS D +++LWD
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 2/159 (1%)
Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA 518
H V FS D + SC D T++++ L+ K H V FS Y A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 519 SAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY--VATGSSDRTIRLWDCVTG 576
+ D+ ++W + + + + H V+C F SN+ +ATGS+D ++LWD
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 577 SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL 615
+ GH V FS LAS DG + +WD+
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 17/232 (7%)
Query: 438 DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC--L 495
+D ++I++ N + VGH+ VR + F+ D L+S S+D+ I++W+ W+
Sbjct: 988 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---WQTGDY 1044
Query: 496 VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN 555
V + H V D + S D ++W + R F H V +
Sbjct: 1045 VFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1103
Query: 556 SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL 615
+ ++ S+D+T ++W S + L GH V +FS+ G LA+ +G + +W++
Sbjct: 1104 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Query: 616 SN---------XXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
S+ V +CFS D L S+G +K W+ A
Sbjct: 1164 SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVA 1213
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 22/238 (9%)
Query: 389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKL--KAMKSSDQLQDIEMECD-------- 438
QV+C +S + +A G + IK+ L ++ + ++ I+ D
Sbjct: 970 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1029
Query: 439 -DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV 497
D ++++ + + + L H+ V+ D S LLS S D T+++W+++ R
Sbjct: 1030 EDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIERD 1087
Query: 498 YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSN 557
+ H V S F+S D+ A++W+ D PL GH V C F +
Sbjct: 1088 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1147
Query: 558 YVATGSSDRTIRLWD---------CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG 606
+ATG + IR+W+ C S H V + FS + L SAGG
Sbjct: 1148 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG 1205
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 32/255 (12%)
Query: 389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAM--KSSDQLQDIEME---------- 436
+V C S D S +A ++ +K+W KL + S+Q+
Sbjct: 666 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT 725
Query: 437 -CDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW-------- 487
+D +++ D E T+ GH V FSPD LL SCS D T+RLW
Sbjct: 726 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Query: 488 -SLLLWRCLVVYKGHGHPVWDIK-------FSPHGYYFASAGHDRMARLWATDSYHPLRL 539
S+ + R + P D++ +S G A +++ S +
Sbjct: 786 KSINVKR---FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 842
Query: 540 FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGR 599
GH+S + F P + S + LW+ + V GH + V+ + FS G
Sbjct: 843 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 902
Query: 600 FLASAGGDGNVHMWD 614
+A D + +W+
Sbjct: 903 SFLTASDDQTIRVWE 917
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +++ E + HE V +FS D S + +CS D +++W + + Y
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 702
Query: 499 KGHGHPVWDIKFSPHGYY--FASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNS 556
H V F+ + A+ +D +LW + GH + V+ +F P+
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 557 NYVATGSSDRTIRLWD 572
+A+ S+D T+RLWD
Sbjct: 763 ELLASCSADGTLRLWD 778
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 128/334 (38%), Gaps = 65/334 (19%)
Query: 388 QQVTCAEISEDVS--ILAVGFSESYIKLWSLVPQKLK--AMKSSDQLQDIEMECDDILV- 442
+QV C + + +LA G ++ ++KLW L ++ + ++ + DD L+
Sbjct: 707 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA 766
Query: 443 --------RIMDERNAE------TTRTLVGHEGP-------VRKLSFSPDRSLLLSCSQD 481
R+ D R+A R + E P V+ S+S D ++ ++
Sbjct: 767 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK- 825
Query: 482 NTIRLWSLLLWRCLV-VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF 540
N + L+ + L ++ GH + FSP+ + A LW DS +
Sbjct: 826 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 885
Query: 541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD----CVTGSHV----------------- 579
GH S V V F P+ + T S D+TIR+W+ C + V
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 945
Query: 580 --------RLLTGHKAPVYAL---SFSVCG-----RFLASAGGDGNVHMWDLSNXXXXXX 623
+L+ G + L S C ++A DG + + +L N
Sbjct: 946 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 1005
Query: 624 XXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
VR + F+ DG L SS +D +++W++
Sbjct: 1006 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1039
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 86/241 (35%), Gaps = 39/241 (16%)
Query: 458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWS----------LLLWRCLVVYKGHGHPVWD 507
GH V + FSPD S L+ S D TIR+W +L VV++ + V
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 946
Query: 508 IK---------------------------FSPHGYYFASAGHDRMARLWATDSYHPLRLF 540
+ SPH Y A D ++ +
Sbjct: 947 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 1006
Query: 541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF 600
VGH V +QF + + + S D I++W+ TG +V L H+ V R
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRL 1065
Query: 601 LASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKL 660
L S DG V +W++ V + S D +S+ D + K+W F L
Sbjct: 1066 L-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 661 S 661
S
Sbjct: 1125 S 1125
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 6/201 (2%)
Query: 460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFAS 519
E V SP + +D I++ L R GH V I+F+ G S
Sbjct: 968 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1027
Query: 520 AGHDRMARL--WATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS 577
+ D + ++ W T Y L+ H V + +S + + S D T+++W+ +TG
Sbjct: 1028 SSEDSVIQVWNWQTGDYVFLQ---AHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGR 1083
Query: 578 HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFS 637
R T H+ V + + S +S D +W VR FS
Sbjct: 1084 IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1143
Query: 638 RDGNILASSGQDCSVKLWDFA 658
DG +LA+ + +++W+ +
Sbjct: 1144 LDGILLATGDDNGEIRIWNVS 1164
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 88/237 (37%), Gaps = 15/237 (6%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFS--PDRSLLLSCSQDNTIRLWSLLLWRCLV 496
D V+I D + T H V F+ + LL + S D ++LW L C
Sbjct: 685 DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 744
Query: 497 VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP-----LRLFVGHYSD----- 546
GH + V +FSP AS D RLW S + ++ F D
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 547 ---VDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLAS 603
V C + + + + + ++ + +G + TGH + + FS
Sbjct: 805 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 604 AGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKL 660
A V +W++ + V + FS DG+ ++ D ++++W+ K+
Sbjct: 865 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 921
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 496 VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN 555
+V + H V+ FS G AS G D+ +++ ++ L H +V C F +
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 668
Query: 556 SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGR--FLASAGGDGNVHMW 613
+Y+AT S+D+ +++WD TG V H V F+ LA+ D + +W
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 614 DLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
DL+ + V FS D +LAS D +++LWD
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 2/159 (1%)
Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA 518
H V FS D + SC D T++++ L+ K H V FS Y A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 519 SAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY--VATGSSDRTIRLWDCVTG 576
+ D+ ++W + + + + H V+C F SN+ +ATGS+D ++LWD
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 577 SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL 615
+ GH V FS LAS DG + +WD+
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 17/232 (7%)
Query: 438 DDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC--L 495
+D ++I++ N + VGH+ VR + F+ D L+S S+D+ I++W+ W+
Sbjct: 981 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---WQTGDY 1037
Query: 496 VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN 555
V + H V D + S D ++W + R F H V +
Sbjct: 1038 VFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1096
Query: 556 SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDL 615
+ ++ S+D+T ++W S + L GH V +FS+ G LA+ +G + +W++
Sbjct: 1097 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Query: 616 SN---------XXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
S+ V +CFS D L S+G +K W+ A
Sbjct: 1157 SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVA 1206
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 22/238 (9%)
Query: 389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKL--KAMKSSDQLQDIEMECD-------- 438
QV+C +S + +A G + IK+ L ++ + ++ I+ D
Sbjct: 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1022
Query: 439 -DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVV 497
D ++++ + + + L H+ V+ D S LLS S D T+++W+++ R
Sbjct: 1023 EDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIERD 1080
Query: 498 YKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSN 557
+ H V S F+S D+ A++W+ D PL GH V C F +
Sbjct: 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140
Query: 558 YVATGSSDRTIRLWD---------CVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG 606
+ATG + IR+W+ C S H V + FS + L SAGG
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG 1198
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 32/255 (12%)
Query: 389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAM--KSSDQLQDIEME---------- 436
+V C S D S +A ++ +K+W KL + S+Q+
Sbjct: 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT 718
Query: 437 -CDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW-------- 487
+D +++ D E T+ GH V FSPD LL SCS D T+RLW
Sbjct: 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Query: 488 -SLLLWRCLVVYKGHGHPVWDIK-------FSPHGYYFASAGHDRMARLWATDSYHPLRL 539
S+ + R + P D++ +S G A +++ S +
Sbjct: 779 KSINVKR---FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 835
Query: 540 FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGR 599
GH+S + F P + S + LW+ + V GH + V+ + FS G
Sbjct: 836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 895
Query: 600 FLASAGGDGNVHMWD 614
+A D + +W+
Sbjct: 896 SFLTASDDQTIRVWE 910
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +++ E + HE V +FS D S + +CS D +++W + + Y
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695
Query: 499 KGHGHPVWDIKFSPHGYY--FASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNS 556
H V F+ + A+ +D +LW + GH + V+ +F P+
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 557 NYVATGSSDRTIRLWD 572
+A+ S+D T+RLWD
Sbjct: 756 ELLASCSADGTLRLWD 771
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 128/334 (38%), Gaps = 65/334 (19%)
Query: 388 QQVTCAEISEDVS--ILAVGFSESYIKLWSLVPQKLK--AMKSSDQLQDIEMECDDILV- 442
+QV C + + +LA G ++ ++KLW L ++ + ++ + DD L+
Sbjct: 700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA 759
Query: 443 --------RIMDERNAE------TTRTLVGHEGP-------VRKLSFSPDRSLLLSCSQD 481
R+ D R+A R + E P V+ S+S D ++ ++
Sbjct: 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK- 818
Query: 482 NTIRLWSLLLWRCLV-VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF 540
N + L+ + L ++ GH + FSP+ + A LW DS +
Sbjct: 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878
Query: 541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWD----CVTGSHV----------------- 579
GH S V V F P+ + T S D+TIR+W+ C + V
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938
Query: 580 --------RLLTGHKAPVYAL---SFSVCG-----RFLASAGGDGNVHMWDLSNXXXXXX 623
+L+ G + L S C ++A DG + + +L N
Sbjct: 939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 998
Query: 624 XXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
VR + F+ DG L SS +D +++W++
Sbjct: 999 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 86/241 (35%), Gaps = 39/241 (16%)
Query: 458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWS----------LLLWRCLVVYKGHGHPVWD 507
GH V + FSPD S L+ S D TIR+W +L VV++ + V
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939
Query: 508 IK---------------------------FSPHGYYFASAGHDRMARLWATDSYHPLRLF 540
+ SPH Y A D ++ +
Sbjct: 940 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 999
Query: 541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF 600
VGH V +QF + + + S D I++W+ TG +V L H+ V R
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRL 1058
Query: 601 LASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKL 660
L S DG V +W++ V + S D +S+ D + K+W F L
Sbjct: 1059 L-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 661 S 661
S
Sbjct: 1118 S 1118
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 6/201 (2%)
Query: 460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFAS 519
E V SP + +D I++ L R GH V I+F+ G S
Sbjct: 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020
Query: 520 AGHDRMARL--WATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS 577
+ D + ++ W T Y L+ H V + +S + + S D T+++W+ +TG
Sbjct: 1021 SSEDSVIQVWNWQTGDYVFLQ---AHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGR 1076
Query: 578 HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFS 637
R T H+ V + + S +S D +W VR FS
Sbjct: 1077 IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1136
Query: 638 RDGNILASSGQDCSVKLWDFA 658
DG +LA+ + +++W+ +
Sbjct: 1137 LDGILLATGDDNGEIRIWNVS 1157
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 88/237 (37%), Gaps = 15/237 (6%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFS--PDRSLLLSCSQDNTIRLWSLLLWRCLV 496
D V+I D + T H V F+ + LL + S D ++LW L C
Sbjct: 678 DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 737
Query: 497 VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP-----LRLFVGHYSD----- 546
GH + V +FSP AS D RLW S + ++ F D
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 547 ---VDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLAS 603
V C + + + + + ++ + +G + TGH + + FS
Sbjct: 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 604 AGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKL 660
A V +W++ + V + FS DG+ ++ D ++++W+ K+
Sbjct: 858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 12/238 (5%)
Query: 427 SDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRL 486
S LQ I ++ + I++ N ++ H+ V + F+ D L+S S D I++
Sbjct: 976 SPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQV 1035
Query: 487 WSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSD 546
W+ L +C+ + +GH V D + + S D ++W + + + FV H
Sbjct: 1036 WNWQLDKCIFL-RGHQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDFVCHQGT 1093
Query: 547 VDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG 606
V ++ ++ S+D+T ++W + L GH V +FSV LA+
Sbjct: 1094 VLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD 1153
Query: 607 DGNVHMWDLSNXX--------XXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+G + +W++SN V LCFS DG +L S+G +K W+
Sbjct: 1154 NGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG--YIKWWN 1209
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 496 VVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPN 555
+V + H V+ FS G AS G D+ +++ ++ L H +V C F +
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD 674
Query: 556 SNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGR--FLASAGGDGNVHMW 613
++AT S D+ +++W+ +TG V H V F+ LA+ D + +W
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 614 DLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
DL+ + V FS D +LAS D ++KLWD
Sbjct: 735 DLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA 518
H V FS D + SC D T++++ L+ K H V FS + A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 519 SAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYV--ATGSSDRTIRLWDCVTG 576
+ D+ ++W + + + + H V+C F +S+++ ATGSSD ++LWD
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK 739
Query: 577 SHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
+ GH V FS + LAS DG + +WD ++
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 19/236 (8%)
Query: 389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKL--KAMKSSDQLQDIEMECDD-ILVRIM 445
QV+C +S + +A G I++ LV ++ + + I+ D+ L+
Sbjct: 969 QVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSS 1028
Query: 446 DERNAETTR-------TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D+ + L GH+ V+ + S LLS S D T+++W+++ +
Sbjct: 1029 DDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKN-SRLLSWSFDGTVKVWNIITGNKEKDF 1087
Query: 499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY 558
H V S F+S D+ A++W+ D PL GH V C F +S
Sbjct: 1088 VCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTL 1147
Query: 559 VATGSSDRTIRLWDCVTGSHVRLL--------TGHKAPVYALSFSVCGRFLASAGG 606
+ATG + IR+W+ G + L H V L FS G+ L SAGG
Sbjct: 1148 LATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG 1203
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D +++ E + HE V +FS D + +CS D +++W+ + + Y
Sbjct: 642 DKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTY 701
Query: 499 KGHGHPVWDIKF--SPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNS 556
H V F S H A+ D +LW + GH + V+ +F P+
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 761
Query: 557 NYVATGSSDRTIRLWDCVTGS 577
+A+ S+D T++LWD + +
Sbjct: 762 KLLASCSADGTLKLWDATSAN 782
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 98/252 (38%), Gaps = 26/252 (10%)
Query: 389 QVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAM--KSSDQLQDIEME---------- 436
+V C S D +A + +K+W+ + +L + S+Q+
Sbjct: 665 EVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLAT 724
Query: 437 -CDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW---SLLLW 492
D +++ D E T+ GH V FSPD LL SCS D T++LW S
Sbjct: 725 GSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANER 784
Query: 493 RCLVV---YKGHGHPVWDIK-------FSPHGYYFASAGHDRMARLWATDSYHPLRLFVG 542
+ + V + P D++ +S G A +++ S + G
Sbjct: 785 KSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTG 844
Query: 543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLA 602
H+S + F P ++ S + LW+ + S V GH + V+ + FS G
Sbjct: 845 HHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFL 904
Query: 603 SAGGDGNVHMWD 614
++ D + +W+
Sbjct: 905 TSSDDQTIRLWE 916
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 89/238 (37%), Gaps = 17/238 (7%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSF--SPDRSLLLSCSQDNTIRLWSLLLWRCLV 496
D V+I + E T H V F S LL + S D ++LW L C
Sbjct: 684 DKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRN 743
Query: 497 VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHP-----LRLFVGHYSD----- 546
GH + V +FSP AS D +LW S + ++ F + D
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDM 803
Query: 547 ---VDCVQFHPNSNYVATGSSDRTIRLWDC-VTGSHVRLLTGHKAPVYALSFSVCGRFLA 602
V C + + + + ++ I L+D +G + TGH + + FS
Sbjct: 804 EVIVKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAV 862
Query: 603 SAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKL 660
A V +W+ + V + FS DG+ +S D +++LW+ K+
Sbjct: 863 VALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKV 920
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 68/194 (35%), Gaps = 37/194 (19%)
Query: 458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYF 517
GH ++ FSP L + + LW+ + +GH V + FSP G F
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 518 ASAGHDRMARLW-----------------------------ATDSYHPLRLFVGHYSDVD 548
++ D+ RLW A D L+L G +D
Sbjct: 904 LTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQID 963
Query: 549 --------CVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF 600
C P+ Y+A G + I + + V + HK V+ + F+ +
Sbjct: 964 YLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKT 1023
Query: 601 LASAGGDGNVHMWD 614
L S+ D + +W+
Sbjct: 1024 LISSSDDAEIQVWN 1037
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 80/237 (33%), Gaps = 39/237 (16%)
Query: 458 GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWS----------LLLWRCLVVYKGHGHPVWD 507
GH V + FSPD S L+ S D TIRLW +L VV++ + V
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA 945
Query: 508 IK---------------------------FSPHGYYFASAGHDRMARLWATDSYHPLRLF 540
+ SPH Y A + + + +
Sbjct: 946 VDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSR 1005
Query: 541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF 600
H V +QF + + + S D I++W+ + L GH+ V R
Sbjct: 1006 FQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNSRL 1064
Query: 601 LASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
L S DG V +W++ V + S D +S+ D + K+W F
Sbjct: 1065 L-SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF 1120
>pdb|2J49|A Chain A, Crystal Structure Of Yeast Taf5 N-Terminal Domain
Length = 148
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 81/142 (57%), Gaps = 4/142 (2%)
Query: 142 PNLYEDAYQDLKKFIENSLDVYKYELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMD 201
P Y AY LK ++++SL++YK EL ++YP+ +++++ LV + A + D
Sbjct: 7 PENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVY-ARRFFDRFSPD 65
Query: 202 HEPHYQEDLRKLSSVTKRDQIRTNEIAETFRSTEFIIRMSRDTLSLLKRHLQEKKH---T 258
+ + ++ +L SV D I+ NE+A F+S ++ I MS+ TL+LL L E + +
Sbjct: 66 FKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGS 125
Query: 259 VLLNIVQEHLYFDMYEGEATRQ 280
++++++ +HL ++ E R+
Sbjct: 126 LIISVINQHLDPNIVESVTARE 147
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 32/235 (13%)
Query: 456 LVGHEGPVRKLSFSPDRSL-LLSCSQDNTIRLWSL-------LLWRCLVVYKGHGHPVWD 507
L GH+ LS++P+ S LLS S D+TI LW + + ++ GH V D
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 508 IKFS-PHGYYFASAGHDRMARLWATDSYH---PLRLFVGHYSDVDCVQFHPNSNYV-ATG 562
+ + H F S D+ +W T S + P H ++V+C+ F+P S ++ ATG
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 563 SSDRTIRLWDCVTGSHVRL--LTGHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNXX 619
S+D+T+ LWD + ++L HK ++ + +S LAS+G D +++WDLS
Sbjct: 293 SADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG 351
Query: 620 XXXXXXXXXDVVRALCFSRDGN---------------ILASSGQDCSVKLWDFAK 659
D L F G+ ++ S +D +++W A+
Sbjct: 352 EEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 32/235 (13%)
Query: 456 LVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSL-------LLWRCLVVYKGHGHPVWD 507
L GH+ LS++ + S LLS S D+T+ LW + + ++ GH V D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 508 IKFS-PHGYYFASAGHDRMARLWATDS---YHPLRLFVGHYSDVDCVQFHPNSNYV-ATG 562
+ + H F S D+ +W T S P L H ++V+C+ F+P S ++ ATG
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 563 SSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNXX 619
S+D+T+ LWD + ++L T HK ++ + +S LAS+G D +++WDLS
Sbjct: 295 SADKTVALWD-LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 620 XXXXXXXXXDVVRALCFSRDGN---------------ILASSGQDCSVKLWDFAK 659
D L F G+ ++ S +D +++W A+
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 17/202 (8%)
Query: 456 LVGHEGPVRKLSFSPDRS-LLLSCSQDNTIRLWSL-------LLWRCLVVYKGHGHPVWD 507
L GH+ LS++ + S LLS S D+T+ LW + + ++ GH V D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 508 IKFS-PHGYYFASAGHDRMARLWATDS---YHPLRLFVGHYSDVDCVQFHPNSNYV-ATG 562
+ + H F S D+ +W T S P L H ++V+C+ F+P S ++ ATG
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 563 SSDRTIRLWDCVTGSHVRLLT--GHKAPVYALSFSVCGR-FLASAGGDGNVHMWDLSNXX 619
S+D+T+ LWD + ++L T HK ++ + +S LAS+G D +++WDLS
Sbjct: 295 SADKTVALWD-LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 620 XXXXXXXXXDVVRALCFSRDGN 641
D L F G+
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGH 375
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 11/223 (4%)
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV-VYK 499
LV I D + RT+ GH+ V LS+ +R +L S S+ I + + + +
Sbjct: 157 LVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ 214
Query: 500 GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNY 558
GH V + + G AS G+D + ++W S P H + V V + P SN
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 559 VATGSS--DRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGG--DGNVHMWD 614
+ATG D+ I W+ TG+ V + + V +L +S + + S G D N+ +W
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333
Query: 615 LSNXXXXXXXXXXXDVVRAL--CFSRDGNILASSGQDCSVKLW 655
S+ R L S DG IL+++ D ++K W
Sbjct: 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 6/155 (3%)
Query: 508 IKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT 567
+K+S G + + + + ++ +S LR GH + V C+ + N + +++GS
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGA 197
Query: 568 IRLWDCVTGSH-VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXX 626
I D +H + L GH + V L++ G LAS G D V +WD +
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN 257
Query: 627 XXDVVRALCFS-RDGNILASSG--QDCSVKLWDFA 658
V+A+ + N+LA+ G D + W+ A
Sbjct: 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 9/161 (5%)
Query: 427 SDQLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSC---SQDNT 483
SD LQ + +D +V+I D R++ T H V+ +++ P +S LL+ + D
Sbjct: 227 SDGLQ-LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285
Query: 484 IRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGH--DRMARLWATDSYHPLRL-- 539
I W+ V G V + +SPH S D +W+ S +
Sbjct: 286 IHFWNAAT-GARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD 344
Query: 540 FVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR 580
H + V P+ ++T +SD ++ W G HV+
Sbjct: 345 IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D ++ I D + TL GH P+R L+FSPD LL++ S D I+++ +
Sbjct: 185 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244
Query: 499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY 558
GH V ++ F P +F S+ D+ ++W + + F H V V+++ N +
Sbjct: 245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSK 304
Query: 559 VATGSSDRTIRLWDC 573
+ + D+ I ++DC
Sbjct: 305 IVSVGDDQEIHIYDC 319
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 2/222 (0%)
Query: 439 DILVRIMDERNA--ETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV 496
D LV++ R+ + +L GH+ V + S + S S D IRLW L + +
Sbjct: 57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK 116
Query: 497 VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNS 556
W + FSP Y A+ H ++ +S + + + P+
Sbjct: 117 SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG 176
Query: 557 NYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS 616
Y+A+G+ D I ++D TG + L GH P+ +L+FS + L +A DG + ++D+
Sbjct: 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Query: 617 NXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFA 658
+ V + F D SS D SVK+WD
Sbjct: 237 HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 4/220 (1%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRK--LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLV 496
D +R+ D N + +++ GPV L+FSPD L + + + ++ + +
Sbjct: 101 DAHIRLWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158
Query: 497 VYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNS 556
G + I +SP G Y AS D + ++ + L GH + + F P+S
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218
Query: 557 NYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS 616
+ T S D I+++D + L+GH + V ++F S+ D +V +WD+
Sbjct: 219 QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278
Query: 617 NXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWD 656
D V + ++ +G+ + S G D + ++D
Sbjct: 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%)
Query: 381 YTLLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSD------------ 428
++L + V +IS + I A +++I+LW L + K +KS D
Sbjct: 74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL--ENGKQIKSIDAGPVDAWTLAFS 131
Query: 429 -QLQDIEMECDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLW 487
Q + V I + + +L + +++SPD L S + D I ++
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191
Query: 488 SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDV 547
+ + L +GH P+ + FSP +A D +++ + GH S V
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 251
Query: 548 DCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGD 607
V F P+ + + SSD+++++WD T + V H+ V+ + ++ G + S G D
Sbjct: 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311
Query: 608 GNVHMWD 614
+H++D
Sbjct: 312 QEIHIYD 318
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 455 TLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY--KGHGHPVWDIK--- 509
TL+GH+G V LSF +++S S D T ++W +VY + H VWD K
Sbjct: 99 TLIGHQGNVCSLSFQD--GVVISGSWDKTAKVWK----EGSLVYNLQAHNASVWDAKVVS 152
Query: 510 FSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIR 569
FS + + ASA D+ +LW D ++ F G ++DV + + + S+D I+
Sbjct: 153 FSENKFLTASA--DKTIKLWQNDKV--IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIK 208
Query: 570 LWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
L D TG +R GH++ VY + G + S G D V +W N
Sbjct: 209 LVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKEN 255
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 473 SLLLSCSQDNTIRLWSL-LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMAR---L 528
S + S S+D T+RLWS W VVY G G + + G D L
Sbjct: 30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLN-SVCYDSEKELLLFGGKDTXINGVPL 88
Query: 529 WATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAP 588
+AT PL +GH +V + F V +GS D+T ++W GS V L H A
Sbjct: 89 FATSGEDPLYTLIGHQGNVCSLSFQD--GVVISGSWDKTAKVWK--EGSLVYNLQAHNAS 144
Query: 589 VY---ALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILAS 645
V+ +SFS +FL +A D + +W ++ DVVR L DG+ ++
Sbjct: 145 VWDAKVVSFSE-NKFL-TASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGHFISC 201
Query: 646 SGQDCSVKLWD 656
S D +KL D
Sbjct: 202 S-NDGLIKLVD 211
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 448 RNAETTRTLVG-HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVW 506
+N + +T G H VR L+ D + SCS D I+L L Y+GH V+
Sbjct: 171 QNDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVY 229
Query: 507 DIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
IK P+G S G DR R+W+ ++ ++ + V N + + GSSD
Sbjct: 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIV-GSSDN 287
Query: 567 TIRL 570
+R+
Sbjct: 288 LVRI 291
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 127/348 (36%), Gaps = 71/348 (20%)
Query: 336 PNAPPVDRIPLPPLKDSEKIDKLKALREATKRVTLGPESLPSIACYTLLNARQQVTCAEI 395
P+ P R L ++ DK++ T T+ SL YT Q T A+
Sbjct: 11 PSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT--EHSHQTTVAKT 67
Query: 396 SEDVSILAVGFSESYIKLWSLVPQKLKAMKS-----SDQLQDIEMECDDILVRIMDER-- 448
S A G +++W Q +K+ S ++DI + + + + E
Sbjct: 68 SPSGYYCASGDVHGNVRIWDTT-QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 126
Query: 449 ---------NAETTRTLVGHEGPVRKLSFSPDRSL-LLSCSQDNTIRLWSLLLWRCLVVY 498
+ L G + + F P R ++S S DNT+ ++ ++ +
Sbjct: 127 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 186
Query: 499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLF-------VGHYSDVDCVQ 551
H V ++++P G FAS G D L+ +F V H V +
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246
Query: 552 FHPNSNYVATGSSDRTIRLWDCVT------------------------------------ 575
+ P+ +A+ S+D+TI++W+ T
Sbjct: 247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306
Query: 576 -------GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS 616
GS ++ GH + ALS S G+ L SA +G+++ WD+S
Sbjct: 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 20/220 (9%)
Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL-----LLWRCLVVYKGHGHPVWDIKFSPH 513
H+ V K S P S +R+W +L + V+ G PV DI +
Sbjct: 60 HQTTVAKTS--PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG---PVKDISWDSE 114
Query: 514 GYYFASAGH--DRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY-VATGSSDRTIRL 570
A+ G +R ++ D+ G ++ V F P+ + + +GS D T+ +
Sbjct: 115 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174
Query: 571 WDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXX------- 623
++ H V+++ ++ G AS GGDG + +++ +
Sbjct: 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234
Query: 624 XXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKLSDE 663
V L +S DG +AS+ D ++K+W+ A L E
Sbjct: 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
Query: 466 LSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHP--VWDIKFSPHGYYFASAGHD 523
++ S D+ + QD+ + ++ L V K HP + + FS +G + +
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEV-KTIVHPAEITSVAFSNNGAFLVATDQS 512
Query: 524 RMARLWATDSYHPL---RLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGS-HV 579
R ++ + L + H + V CV + P++ +ATGS D ++ +W+ S H
Sbjct: 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 572
Query: 580 RLLTG-HKAPVYALSFSVCGRFLASAGGDGNVHMWDL 615
++ G H + + SAG D N+ W++
Sbjct: 573 IIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 391 TCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKS---SDQLQDIEMECDDILVRIMDE 447
+C +S D +AVG +S + ++ L + +K+ ++ + + + D+
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ 511
Query: 448 ----------RNAET--TRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
N E T + H V +S+SPD L + S DN++ +W++
Sbjct: 512 SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 43/146 (29%)
Query: 456 LVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGY 515
L GHE P+ ++ ++ + LL SCS+D++ +W L L GH +W I
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI------- 80
Query: 516 YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVT 575
DVDC + Y TGS+D +I+LWD
Sbjct: 81 ------------------------------DVDCF-----TKYCVTGSADYSIKLWDVSN 105
Query: 576 GSHVRLLTGHKAPVYALSFSVCGRFL 601
G V PV + FS CG +
Sbjct: 106 GQCVATWKS-PVPVKRVEFSPCGNYF 130
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 449 NAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDI 508
N E TL GH G + + ++ S D +I+LW + +C+ +K PV +
Sbjct: 63 NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSP-VPVKRV 121
Query: 509 KFSPHGYYF 517
+FSP G YF
Sbjct: 122 EFSPCGNYF 130
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%)
Query: 541 VGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRF 600
GH + V+++ + + + S D + +W + G + L GH ++++ ++
Sbjct: 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKY 88
Query: 601 LASAGGDGNVHMWDLSN 617
+ D ++ +WD+SN
Sbjct: 89 CVTGSADYSIKLWDVSN 105
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 35/235 (14%)
Query: 455 TLVGHEGPVRKLSFSPDR--SLLLSCSQDNTIRLWSLL--LWRCLVVYKGHGHPVWDIKF 510
TL GHEGPV ++ ++ + ++L SCS D + +W W + V+ H V +++
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 511 SPHGY-----YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP----------- 554
+PH Y +S G + + P+ + H V+ + P
Sbjct: 108 APHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 555 --NSNYVATGSSDRTIRLW----DCVTGSHVRLLTGHKAPVYALSFS---VCGRFLASAG 605
S TG +D +++W D T L GH V +++S + +LAS
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 606 GDGNVHMWDLSN-----XXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLW 655
D +W N DV+ +S GN+LA SG D V LW
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 559 VATGSSDRTIRLWDCVTGSH--VRLLTGHKAPVYALSFS--VCGRFLASAGGDGNVHMWD 614
+AT SSD+TI++++ +H + LTGH+ PV+ + ++ G LAS DG V +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 615 LSN 617
N
Sbjct: 84 EEN 86
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 35/235 (14%)
Query: 455 TLVGHEGPVRKLSFSPDR--SLLLSCSQDNTIRLWSL--LLWRCLVVYKGHGHPVWDIKF 510
TL GHEGPV ++ ++ + ++L SCS D + +W W + V+ H V +++
Sbjct: 50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 109
Query: 511 SPHGY-----YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP----------- 554
+PH Y +S G + + P+ + H V+ + P
Sbjct: 110 APHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 168
Query: 555 --NSNYVATGSSDRTIRLW----DCVTGSHVRLLTGHKAPVYALSFS---VCGRFLASAG 605
S TG +D +++W D T L GH V +++S + +LAS
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228
Query: 606 GDGNVHMWDLSNXXXXXXXXXXX-----DVVRALCFSRDGNILASSGQDCSVKLW 655
D +W N DV+ +S GN+LA SG D V LW
Sbjct: 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 559 VATGSSDRTIRLWDCVTGSH--VRLLTGHKAPVYALSFS--VCGRFLASAGGDGNVHMWD 614
+AT SSD+TI++++ +H + LTGH+ PV+ + ++ G LAS DG V +W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 615 LSN 617
N
Sbjct: 86 EEN 88
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 53/223 (23%)
Query: 442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC-LVVYKG 500
V++ D + + R + H V LS+ + +L S S+ I + + + G
Sbjct: 171 VQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG 228
Query: 501 HGHPVWDIKFSPHGYYFASAGHDRMARLWAT----DSYHPLRLFVGHYSDVDCVQFHP-N 555
H V ++++P G + AS G+D + +W + + PL+ F H V V + P
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 556 SNYVATG--SSDRTIRLWDCVTGS------------------------------------ 577
SN +ATG +SDR IR+W+ +G+
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 348
Query: 578 -------HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW 613
V L GH + V +L+ S G +ASA D + +W
Sbjct: 349 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 454 RTLVGHEGPVRKLSFSPDRSLLLSC---SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKF 510
+T H+G V+ +++ P +S +L+ + D IR+W++ CL H V I +
Sbjct: 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILW 328
Query: 511 SPHGYYFASAGHDRMAR---LWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT 567
SPH Y +GH +W + + GH S V + P+ VA+ ++D T
Sbjct: 329 SPH-YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 387
Query: 568 IRLWDC 573
+RLW C
Sbjct: 388 LRLWRC 393
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 523 DRMARLWATDSYHPLRLFV----GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH 578
D LW+ S L+L G Y + V + NY+A G+S ++LWD
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEY--ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181
Query: 579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS-NXXXXXXXXXXXDVVRALCFS 637
+R +T H A V +LS++ L+S G++H D+ V L ++
Sbjct: 182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239
Query: 638 RDGNILASSGQDCSVKLWDFA 658
DG LAS G D V +W A
Sbjct: 240 PDGRHLASGGNDNLVNVWPSA 260
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 53/223 (23%)
Query: 442 VRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRC-LVVYKG 500
V++ D + + R + H V LS+ + +L S S+ I + + + G
Sbjct: 182 VQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG 239
Query: 501 HGHPVWDIKFSPHGYYFASAGHDRMARLWAT----DSYHPLRLFVGHYSDVDCVQFHP-N 555
H V ++++P G + AS G+D + +W + + PL+ F H V V + P
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 556 SNYVATG--SSDRTIRLWDCVTGS------------------------------------ 577
SN +ATG +SDR IR+W+ +G+
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 359
Query: 578 -------HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW 613
V L GH + V +L+ S G +ASA D + +W
Sbjct: 360 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 12/180 (6%)
Query: 404 VGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDERNAETT----RTLVGH 459
V +E ++ S Q++ ++ + + + +D LV + E +T H
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 286
Query: 460 EGPVRKLSFSPDRSLLLSC---SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYY 516
+G V+ +++ P +S +L+ + D IR+W++ CL H V I +SPH Y
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPH-YK 344
Query: 517 FASAGHDRMAR---LWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDC 573
+GH +W + + GH S V + P+ VA+ ++D T+RLW C
Sbjct: 345 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 404
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 523 DRMARLWATDSYHPLRLFV----GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH 578
D LW+ S L+L G Y + V + NY+A G+S ++LWD
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEY--ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 192
Query: 579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS-NXXXXXXXXXXXDVVRALCFS 637
+R +T H A V +LS++ L+S G++H D+ V L ++
Sbjct: 193 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 250
Query: 638 RDGNILASSGQDCSVKLWDFA 658
DG LAS G D V +W A
Sbjct: 251 PDGRHLASGGNDNLVNVWPSA 271
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 35/235 (14%)
Query: 455 TLVGHEGPVRKLSFSPDR--SLLLSCSQDNTIRLWSL--LLWRCLVVYKGHGHPVWDIKF 510
TL GHEGPV ++ ++ + ++L SCS D + +W W + V+ H V +++
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 511 SPHGY-----YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP----------- 554
+PH Y +S G + + P+ + H V+ + P
Sbjct: 108 APHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 555 --NSNYVATGSSDRTIRLW----DCVTGSHVRLLTGHKAPVYALSFS---VCGRFLASAG 605
S TG +D +++W D T L GH V +++S + +LAS
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 606 GDGNVHMWDLSNXXXXXXXXXXX-----DVVRALCFSRDGNILASSGQDCSVKLW 655
D +W N DV+ +S GN+LA SG D V LW
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 559 VATGSSDRTIRLWDCVTGSH--VRLLTGHKAPVYALSFS--VCGRFLASAGGDGNVHMWD 614
+AT SSD+TI++++ +H + LTGH+ PV+ + ++ G LAS DG V +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 615 LSN 617
N
Sbjct: 84 EEN 86
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 35/235 (14%)
Query: 455 TLVGHEGPVRKLSFSPDR--SLLLSCSQDNTIRLWSL--LLWRCLVVYKGHGHPVWDIKF 510
TL GHEGPV ++ ++ + ++L SCS D + +W W + V+ H V +++
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 511 SPHGY-----YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP----------- 554
+PH Y +S G + + P+ + H V+ + P
Sbjct: 108 APHEYGPMLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 555 --NSNYVATGSSDRTIRLW----DCVTGSHVRLLTGHKAPVYALSFS---VCGRFLASAG 605
S TG +D +++W D T L GH V +++S + ++AS
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226
Query: 606 GDGNVHMWDLSNXXXXXXXXXXX-----DVVRALCFSRDGNILASSGQDCSVKLW 655
D +W N DV+ +S GN+LA SG D V LW
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 559 VATGSSDRTIRLWDCVTGSH--VRLLTGHKAPVYALSFS--VCGRFLASAGGDGNVHMWD 614
+AT SSD+TI++++ +H + LTGH+ PV+ + ++ G LAS DG V +W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 615 LSN 617
N
Sbjct: 84 EEN 86
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 102/258 (39%), Gaps = 52/258 (20%)
Query: 448 RNAETTRTLVG------------HEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSL----- 489
R AE+TR ++G H G + L P + +LS D I L+ L
Sbjct: 19 RRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR 78
Query: 490 -LLWRCLVVYK-GHGHP------VWDIKFSPHGY-YFASAGHDRMARLWATDSYHPLRLF 540
+ C V G HP V +++ PH F S+ D+ ++W T++ +F
Sbjct: 79 QSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF 138
Query: 541 VGHYSDVDCVQFHPNSN---YVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVC 597
V P S VA G+ ++L D +GS +L GH+ + A+S+S
Sbjct: 139 -NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP- 196
Query: 598 GRF---LASAGGDGNVHMWDL----------------SNXXXXXXXXXXXDVVRALCFSR 638
R+ LA+A D V +WD+ + V LCF+
Sbjct: 197 -RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255
Query: 639 DGNILASSGQDCSVKLWD 656
DG L + G D ++LW+
Sbjct: 256 DGLHLLTVGTDNRMRLWN 273
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 87/227 (38%), Gaps = 52/227 (22%)
Query: 369 TLGPE----SLPSIACYTLLNA-RQQVTCAEISEDVS-ILAVGFSESYIKLWSLVPQKLK 422
T GP+ L S +C +L RQ++ S ILA ++S +KLW
Sbjct: 163 TRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW-------- 214
Query: 423 AMKSSDQLQDIEMECDDILVRIMDERNAETTRTL----VGHEGPVRKLSFSPDRSLLLSC 478
D+ ++ +D+ N + ++ + H G V L F+ D LL+
Sbjct: 215 ---------DVRRASGCLIT--LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263
Query: 479 SQDNTIRLW-------SLLLWR--CLVVYKGHGHPVW-----DIKFSPHGYYFASAGHDR 524
DN +RLW +L+ + C KG V + F P+G A
Sbjct: 264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIA------ 317
Query: 525 MARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLW 571
++ S + + GHY VDC F N + +GS D I W
Sbjct: 318 ---VYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 35/235 (14%)
Query: 455 TLVGHEGPVRKLSFSPDR--SLLLSCSQDNTIRLWSL--LLWRCLVVYKGHGHPVWDIKF 510
TL GHEGPV ++ ++ + ++L SCS D + +W W + V+ H V +++
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 511 SPHGY-----YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP----------- 554
+PH Y +S G + + P+ + H V+ + P
Sbjct: 108 APHEYGPXLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 555 --NSNYVATGSSDRTIRLW----DCVTGSHVRLLTGHKAPVYALSFS---VCGRFLASAG 605
S TG +D +++W D T L GH V +++S + + AS
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVS 226
Query: 606 GDGNVHMWDLSNXXXXXXXXXXX-----DVVRALCFSRDGNILASSGQDCSVKLW 655
D +W N DV+ +S GN+LA SG D V LW
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 50/169 (29%)
Query: 495 LVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWAT----DSYHPLRLFVGHYSDVDCV 550
+ GH V ++++P G + AS G+D + +W + + PL+ F H V V
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 551 QFHP-NSNYVATG--SSDRTIRLWDCVTGS------------------------------ 577
+ P SN +ATG +SDR IR+W+ +G+
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262
Query: 578 -------------HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMW 613
V L GH + V +L+ S G +ASA D + +W
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 454 RTLVGHEGPVRKLSFSPDRSLLLSC---SQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKF 510
+T H+G V+ +++ P +S +L+ + D IR+W++ CL H V I +
Sbjct: 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILW 248
Query: 511 SPHGYYFASAGHDRMAR---LWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRT 567
SPH Y +GH +W + + GH S V + P+ VA+ ++D T
Sbjct: 249 SPH-YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307
Query: 568 IRLWDC 573
+RLW C
Sbjct: 308 LRLWRC 313
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 523 DRMARLWATDSYHPLRLFV----GHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSH 578
D LW+ S L+L G Y + V + NY+A G+S ++LWD
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEY--ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101
Query: 579 VRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLS-NXXXXXXXXXXXDVVRALCFS 637
+R +T H A V +LS++ L+S G++H D+ V L ++
Sbjct: 102 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159
Query: 638 RDGNILASSGQDCSVKLWDFA 658
DG LAS G D V +W A
Sbjct: 160 PDGRHLASGGNDNLVNVWPSA 180
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 56/270 (20%)
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVY- 498
++RI++ + + VGH + +L F P D +LLLS S+D+ +RLW++ + ++
Sbjct: 132 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 191
Query: 499 --KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS------------YHP---LRLFV 541
+GH V + G S G D +LW +S Y+P R F+
Sbjct: 192 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 251
Query: 542 G---HYSD----------VDCVQFHPNSNYVATGSSDRTIRLW---------DCV--TGS 577
H+ D VDCV++ + + + S + I W D + + S
Sbjct: 252 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 309
Query: 578 HVRLLTGH---KAPVYALSFSV--CGRFLASAGGDGNVHMWDL------SNXXXXXXXXX 626
+V +L + ++ + FS+ + LA G +++WDL
Sbjct: 310 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 369
Query: 627 XXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+R FSRD +IL + D S+ WD
Sbjct: 370 CGAAIRQTSFSRDSSILIAVCDDASIWRWD 399
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 517 FASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVT 575
A AG + R+ + ++ +VGH + ++ ++FHP + N + + S D +RLW+ T
Sbjct: 124 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 183
Query: 576 GSHVRL---LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
+ V + + GH+ V + + + G + S G D ++ +W +++
Sbjct: 184 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 228
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 474 LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATD 532
LL IR+ + + +C+ Y GHG+ + ++KF P S D RLW
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 533 SYHPLRLFV---GHYSDVDCVQFHPNSNYVATGSSDRTIRLW 571
+ + +F GH +V + + + D +++LW
Sbjct: 183 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 56/270 (20%)
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVY- 498
++RI++ + + VGH + +L F P D +LLLS S+D+ +RLW++ + ++
Sbjct: 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 155
Query: 499 --KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS------------YHP---LRLFV 541
+GH V + G S G D +LW +S Y+P R F+
Sbjct: 156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 215
Query: 542 G---HYSD----------VDCVQFHPNSNYVATGSSDRTIRLW---------DCV--TGS 577
H+ D VDCV++ + + + S + I W D + + S
Sbjct: 216 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 273
Query: 578 HVRLLTGH---KAPVYALSFSV--CGRFLASAGGDGNVHMWDL------SNXXXXXXXXX 626
+V +L + ++ + FS+ + LA G +++WDL
Sbjct: 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333
Query: 627 XXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+R FSRD +IL + D S+ WD
Sbjct: 334 CGAAIRQTSFSRDSSILIAVCDDASIWRWD 363
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 517 FASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVT 575
A AG + R+ + ++ +VGH + ++ ++FHP + N + + S D +RLW+ T
Sbjct: 88 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147
Query: 576 GSHVRL---LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
+ V + + GH+ V + + + G + S G D ++ +W +++
Sbjct: 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 474 LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATD 532
LL IR+ + + +C+ Y GHG+ + ++KF P S D RLW
Sbjct: 87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 533 SYHPLRLF---VGHYSDVDCVQFHPNSNYVATGSSDRTIRLW 571
+ + +F GH +V + + + D +++LW
Sbjct: 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 56/270 (20%)
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVY- 498
++RI++ + + VGH + +L F P D +LLLS S+D+ +RLW++ + ++
Sbjct: 91 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 150
Query: 499 --KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS------------YHP---LRLFV 541
+GH V + G S G D +LW +S Y+P R F+
Sbjct: 151 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 210
Query: 542 G---HYSD----------VDCVQFHPNSNYVATGSSDRTIRLW---------DCV--TGS 577
H+ D VDCV++ + + + S + I W D + + S
Sbjct: 211 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 268
Query: 578 HVRLLTGH---KAPVYALSFSV--CGRFLASAGGDGNVHMWDL------SNXXXXXXXXX 626
+V +L + ++ + FS+ + LA G +++WDL
Sbjct: 269 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 328
Query: 627 XXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+R FSRD +IL + D S+ WD
Sbjct: 329 CGAAIRQTSFSRDSSILIAVCDDASIWRWD 358
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 517 FASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVT 575
A AG + R+ + ++ +VGH + ++ ++FHP + N + + S D +RLW+ T
Sbjct: 83 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 142
Query: 576 GSHVRL---LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
+ V + + GH+ V + + + G + S G D ++ +W +++
Sbjct: 143 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 187
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 474 LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATD 532
LL IR+ + + +C+ Y GHG+ + ++KF P S D RLW
Sbjct: 82 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 533 SYHPLRLFV---GHYSDVDCVQFHPNSNYVATGSSDRTIRLW 571
+ + +F GH +V + + + D +++LW
Sbjct: 142 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 28/229 (12%)
Query: 500 GHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDS-------YHPLRLFVGHYSDVDCVQ 551
GH PV DI + PH AS D +W P+ GH V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 552 FHPNS-NYVATGSSDRTIRLWDCVTGSHVRLLTG--HKAPVYALSFSVCGRFLASAGGDG 608
+HP + N + + D I +WD TG+ V L H +Y++ +S G + ++ D
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 609 NVHMWDLSNXXXXXXXXXXXDVVRAL--CFSRDGNILASSGQDCS---VKLWDFAKLSDE 663
V + + + R + F +G IL + S V LWD L +
Sbjct: 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP 258
Query: 664 VGTEEVNLSHSADI----KNSSLAYL-------VRSYK-TKASPLLHLI 700
+ +E++ S + ++++ YL +R ++ T +P LH +
Sbjct: 259 LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL 307
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 539 LFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGS-------HVRLLTGHKAPVY 590
L GH + V + + P N N +A+GS D T+ +W+ G V L GH V
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 591 ALSF-SVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXX--DVVRALCFSRDGNILASSG 647
+++ L SAG D + +WD+ D + ++ +SRDG ++ +S
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 648 QDCSVKL 654
+D V++
Sbjct: 196 RDKRVRV 202
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 56/270 (20%)
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVY- 498
++RI++ + + VGH + +L F P D +LLLS S+D+ +RLW++ + ++
Sbjct: 95 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 154
Query: 499 --KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS------------YHP---LRLFV 541
+GH V + G S G D +LW +S Y+P R F+
Sbjct: 155 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 214
Query: 542 G---HYSD----------VDCVQFHPNSNYVATGSSDRTIRLW---------DCV--TGS 577
H+ D VDCV++ + + + S + I W D + + S
Sbjct: 215 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 272
Query: 578 HVRLLTGH---KAPVYALSFSV--CGRFLASAGGDGNVHMWDL------SNXXXXXXXXX 626
+V +L + ++ + FS+ + LA G +++WDL
Sbjct: 273 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 332
Query: 627 XXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+R FSRD +IL + D S+ WD
Sbjct: 333 CGAAIRQTSFSRDSSILIAVCDDASIWRWD 362
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 517 FASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVT 575
A AG + R+ + ++ +VGH + ++ ++FHP + N + + S D +RLW+ T
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
Query: 576 GSHVRL---LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
+ V + + GH+ V + + + G + S G D ++ +W +++
Sbjct: 147 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 474 LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATD 532
LL IR+ + + +C+ Y GHG+ + ++KF P S D RLW
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 533 SYHPLRLF---VGHYSDVDCVQFHPNSNYVATGSSDRTIRLW 571
+ + +F GH +V + + + D +++LW
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 110/270 (40%), Gaps = 56/270 (20%)
Query: 441 LVRIMDERNAETTRTLVGHEGPVRKLSFSP-DRSLLLSCSQDNTIRLWSLLLWRCLVVY- 498
++RI++ + + VGH + +L F P D +LLLS S+D+ +RLW++ + ++
Sbjct: 95 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 154
Query: 499 --KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDS------------YHP---LRLFV 541
+GH V + G S G D +LW +S Y+P R F+
Sbjct: 155 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 214
Query: 542 G---HYSD----------VDCVQFHPNSNYVATGSSDRTIRLW---------DCV--TGS 577
H+ D VDCV++ + + + S + I W D + + S
Sbjct: 215 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 272
Query: 578 HVRLLTGH---KAPVYALSFSV--CGRFLASAGGDGNVHMWDL------SNXXXXXXXXX 626
+V +L + ++ + FS + LA G +++WDL
Sbjct: 273 NVTILGRFDYSQCDIWYMRFSTDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 332
Query: 627 XXDVVRALCFSRDGNILASSGQDCSVKLWD 656
+R FSRD +IL + D S+ WD
Sbjct: 333 CGAAIRQTSFSRDSSILIAVCDDASIWRWD 362
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 517 FASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVT 575
A AG + R+ + ++ +VGH + ++ ++FHP + N + + S D +RLW+ T
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
Query: 576 GSHVRL---LTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
+ V + + GH+ V + + + G + S G D ++ +W +++
Sbjct: 147 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 474 LLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASAGHDRMARLWATD 532
LL IR+ + + +C+ Y GHG+ + ++KF P S D RLW
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 533 SYHPLRLF---VGHYSDVDCVQFHPNSNYVATGSSDRTIRLW 571
+ + +F GH +V + + + D +++LW
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 28/229 (12%)
Query: 500 GHGHPVWDIKFSPHG-YYFASAGHDRMARLWATDS-------YHPLRLFVGHYSDVDCVQ 551
GH PV DI + PH AS D +W P+ GH V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 552 FHPNS-NYVATGSSDRTIRLWDCVTGSHVRLLTG--HKAPVYALSFSVCGRFLASAGGDG 608
+HP + N + + D I +WD TG+ V L H +Y++ +S G + ++ D
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 609 NVHMWDLSNXXXXXXXXXXXDVVRAL--CFSRDGNILASSGQDCS---VKLWDFAKLSDE 663
V + + + R + F +G IL + S V LWD L +
Sbjct: 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP 258
Query: 664 VGTEEVNLSHSADI----KNSSLAYL-------VRSYK-TKASPLLHLI 700
+ +E++ S + ++++ YL +R ++ T +P LH +
Sbjct: 259 LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL 307
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 539 LFVGHYSDVDCVQFHP-NSNYVATGSSDRTIRLWDCVTGS-------HVRLLTGHKAPVY 590
L GH + V + + P N N +A+GS D T+ +W+ G V L GH V
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 591 ALSF-SVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXX--DVVRALCFSRDGNILASSG 647
+++ L SAG D + +WD+ D + ++ +SRDG ++ +S
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 648 QDCSVKL 654
+D V++
Sbjct: 196 RDKRVRV 202
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 104/271 (38%), Gaps = 39/271 (14%)
Query: 439 DILVRIMDERNAETT--RTLVGHEGPVRKLSFSPD--RSLLLSCSQDNTIRLW--SLLLW 492
D V+I D RN L GHEGPV +++++ ++L SCS D + +W W
Sbjct: 34 DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93
Query: 493 RCLVVYKGHGHPVWDIKFSPHGYYF-----ASAGHDRMARLWATDSYHPLRLFVGHYSDV 547
+ GH V + ++PH Y +S G + + ++ H
Sbjct: 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC 153
Query: 548 DCVQF-----------HPNS---NYV---ATGSSDRTIRLWDCVTGSHVR---LLTGHKA 587
+ V + HP+ NY+ A+G D I+LW + L H
Sbjct: 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213
Query: 588 PV----YALSFSVCGRFLASAGGDGNVHMWDL----SNXXXXXXXXXXXDVVRALCFSRD 639
V +A S + +AS DG V +W SN DVV + +S
Sbjct: 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT 273
Query: 640 GNILASSGQDCSVKLWDFAKLSDEVGTEEVN 670
NILA SG D V LW + V +VN
Sbjct: 274 ANILAVSGGDNKVTLWKESVDGQWVCISDVN 304
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY 558
+ H + +KF P G S+ D ++W+ R +GH + V +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 559 VATGSSDRTIRLWDCVTGSHVRLLTGHKAP 588
V + S D TIRLW+C TG+ + + P
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENP 222
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLA 602
H S++ ++F P+ + + S D +++W GS+ R L GH+A V ++ GR +
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 603 SAGGDGNVHMWD 614
SA DG + +W+
Sbjct: 195 SASLDGTIRLWE 206
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%)
Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA 518
H + KL F P L+S SQD +++WS+ GH V DI G
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 519 SAGHDRMARLWATDSYHPLRLF 540
SA D RLW + + F
Sbjct: 195 SASLDGTIRLWECGTGTTIHTF 216
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 79/215 (36%), Gaps = 55/215 (25%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D+ ++I ++ RTL+GH V ++ +LS S D TIR LW C
Sbjct: 157 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR-----LWEC---- 207
Query: 499 KGHGHPV--WDIKFSPHGYYFASA---GHDRMARLWATDSYHPLR-------LFVGHYSD 546
G G + ++ K +PH + A G DR +T + L + GH S
Sbjct: 208 -GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 266
Query: 547 VDCV--------------QF----------HPNSNYVATGSSDRTIRLWD-----CVTGS 577
V V +F N+NY+ G + + WD C G
Sbjct: 267 VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG- 325
Query: 578 HVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHM 612
L P+ + F+ G S+G D ++ +
Sbjct: 326 --EFLINEGTPINNVYFA-AGALFVSSGFDTSIKL 357
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 499 KGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNY 558
+ H + +KF P G S+ D ++W+ R +GH + V +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 559 VATGSSDRTIRLWDCVTGSHVRLLTGHKAP 588
V + S D TIRLW+C TG+ + + P
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENP 225
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 543 HYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLA 602
H S++ ++F P+ + + S D +++W GS+ R L GH+A V ++ GR +
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 603 SAGGDGNVHMWD 614
SA DG + +W+
Sbjct: 198 SASLDGTIRLWE 209
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%)
Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHGYYFA 518
H + KL F P L+S SQD +++WS+ GH V DI G
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 519 SAGHDRMARLWATDSYHPLRLF 540
SA D RLW + + F
Sbjct: 198 SASLDGTIRLWECGTGTTIHTF 219
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 75/207 (36%), Gaps = 54/207 (26%)
Query: 439 DILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVY 498
D+ ++I ++ RTL+GH V ++ +LS S D TIR LW C
Sbjct: 160 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR-----LWEC---- 210
Query: 499 KGHGHPV--WDIKFSPHGYYFASA---GHDRMARLWATDSYHPLR-------LFVGHYSD 546
G G + ++ K +PH + A G DR +T + L + GH S
Sbjct: 211 -GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269
Query: 547 VDCV--------------QF----------HPNSNYVATGSSDRTIRLWD-----CVTGS 577
V V +F N+NY+ G + + WD C G
Sbjct: 270 VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG- 328
Query: 578 HVRLLTGHKAPVYALSFSVCGRFLASA 604
L P+ + F+ F++S
Sbjct: 329 --EFLINEGTPINNVYFAAGALFVSSG 353
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 49/289 (16%)
Query: 388 QQVTCAEISEDVSILAVGFSESYIKLWSLVPQKLKAMKSSDQLQDIEMECDDILVRIMDE 447
QVTC S D + + G ++LW+ L +
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNF--------------------- 147
Query: 448 RNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK-------- 499
H P+ + ++ D + ++S +N LW+++ + ++
Sbjct: 148 -----------HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196
Query: 500 -------GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQF 552
G G D+++ F G ++ P +GH+ + ++F
Sbjct: 197 INAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF 255
Query: 553 HPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHM 612
+ + + + S D T+R+W G+ GH + + S+ V + S DG+V +
Sbjct: 256 NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW-VGDDKVISCSMDGSVRL 314
Query: 613 WDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDFAKLS 661
W L + A S+DG A + D V ++D KL+
Sbjct: 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 466 LSFSPDR---SLLLSCSQDNTIRLWSLLLWRCLV--VYKGHGHPVWDIKFSPHGYYFASA 520
LSFSP + L++ S N +R W + + + H PV D+ +S G +A
Sbjct: 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104
Query: 521 GHDRMARLWATDSYHPLRLFVGHYSDVDCVQF--HPNSNYVATGSSDRTIRLWD 572
D+ A++W S +++ H + V + + PN + V TGS D+T++ WD
Sbjct: 105 SCDKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKF--SPHGYY 516
H GPV + +S D S + + S D T ++W L + + + + H PV I + +P+
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSC 143
Query: 517 FASAGHDRMARLWATDSYHPLRL 539
+ D+ + W T S +P+ +
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMV 166
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 517 FASAGHDRMARLWATDSYHPLR-LFVGHYSD--VDCVQFHPNS---NYVATGSSDRTIRL 570
F ++G TD+++P++ + V D + C+ F P + N++ GS +R
Sbjct: 10 FGTSGTSMFGSA-TTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRC 68
Query: 571 WDCVTGSHV--RLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSN 617
W+ + H PV + +S G + +A D MWDLS+
Sbjct: 69 WEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 589 VYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILA 644
V ++F LA+ G DG WD + A CF+ +GNI A
Sbjct: 276 VNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA 331
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 554 PNSNYVATGSSDRTIRLWDCVTGSHVRL---LTGHKAPVYALSFSVCGRFLASAGGDGNV 610
P+ + G T+ +WD + R+ LT YAL+ S + S DGN+
Sbjct: 107 PDGCTLIVGGEASTLSIWD-LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165
Query: 611 HMWDLSNXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKLWDF 657
+WDL N D + S DG L + G D +V+ WD
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 89/243 (36%), Gaps = 9/243 (3%)
Query: 463 VRKLSFSPDRSLLLSCSQDNTIRLWSLL--LWRCLVVYKGHGHPVWDIKFSPHGYYFASA 520
+R PD L+ + +T+ +W L R + + SP S
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 521 GHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLWDCVTGSHVR 580
D +W + +R F GH C+ + + TG D T+R WD G R
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---R 216
Query: 581 LLTGH--KAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDVVRALCFSR 638
L H + +++L + G +LA NV + + N V +L F+
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV-NKPDKYQLHLHESCVLSLKFAY 275
Query: 639 DGNILASSGQDCSVKLWDFAKLSDEVGTEEVNLSHSADIKNSSLAYLVRSYKTKASPLLH 698
G S+G+D + W + ++E + S DI Y+V K + +
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD-KYIVTGSGDKKATVYE 334
Query: 699 LIF 701
+I+
Sbjct: 335 VIY 337
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/246 (18%), Positives = 89/246 (36%), Gaps = 16/246 (6%)
Query: 383 LLNARQQVTCAEISEDVSILAVGFSESYIKLWSLVPQ--KLKAMKSSDQLQDIEME---- 436
LN + ++ D L VG S + +W L ++KA +S +
Sbjct: 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152
Query: 437 -------CDDILVRIMDERNAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL 489
C D + + D N R GH + S D + L + DNT+R W L
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Query: 490 LLWRCLVVYKGHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDC 549
R L + ++ + + P G + A + + +L + H S V
Sbjct: 213 REGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVLS 270
Query: 550 VQFHPNSNYVATGSSDRTIRLWDCVTGSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGN 609
++F + + D + W G+ + + + V + SV +++ + GD
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKK 329
Query: 610 VHMWDL 615
++++
Sbjct: 330 ATVYEV 335
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 549 CVQFHPNSNYV-ATGSSDRTIRLWDCVTGSH-VRLLTGHKAPVYALSFSVCG-RFLASAG 605
CV HPN +V ATG D + +WD G+ V LL H+A ++ + F L +
Sbjct: 241 CVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCS 300
Query: 606 GDGNVHMWDLS 616
DG++ WD S
Sbjct: 301 EDGSLWHWDAS 311
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 12/207 (5%)
Query: 460 EGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK----GHGHPVWDIKFSPHGY 515
E V +++ ++ +L++ S + LW +L L+V K H V + G
Sbjct: 94 EAGVTDVAWVSEKGILVA-SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT 152
Query: 516 YFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHPNSN--YVATGSSDRTIRLWDC 573
S G D ++W L+ + H S+V+CV P + +++ G R I LWD
Sbjct: 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR-ILLWDT 211
Query: 574 VT---GSHVRLLTGHKAPVYALSFSVCGRFLASAGGDGNVHMWDLSNXXXXXXXXXXXDV 630
+ + P A GNV + ++ N
Sbjct: 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN 271
Query: 631 VRALCFSRDGN-ILASSGQDCSVKLWD 656
+ L +S + LAS +DC+V + D
Sbjct: 272 ITGLAYSYHSSPFLASISEDCTVAVLD 298
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 629 DVVRALCFSRDGNILASSGQDCSVKLWDFAK 659
D+V+ L DG S G+D SVK+WD ++
Sbjct: 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL--LLWRCLVVYKGHGHPVWDIKFSPHGYY 516
H G V + ++PD + +++C D +W+L W+ +V ++++P+
Sbjct: 51 HNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 517 FASAGHDRMARL--------WATDSY--HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
FA R+ + W + P+R S V + +HPNS +A GS D
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIR------STVLSLDWHPNSVLLAAGSCDF 164
Query: 567 TIRL 570
R+
Sbjct: 165 KCRI 168
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 462 PVRKLSFSPDRSLLLSCSQDNTIRLW--SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFAS 519
P+ +++ DR+ + C ++ + ++ S W + K H V I ++P +
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 520 AGHDRMARLWATD--SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRL 570
G DR A +W ++ P + + CV++ PN A GS R I +
Sbjct: 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 409 SYIKLWSLVPQKLKAM----KSSDQLQDIEMECDDILVRIMDERNAETT-RTL-VGHEGP 462
SY S + Q+L + K+S ++ +D + I D RNA T +TL GH+
Sbjct: 205 SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG 264
Query: 463 VRKLSFS-PDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPHG-YYFASA 520
+ L + D LLLS +DNT+ LW+ L + G+ + KF+P FA A
Sbjct: 265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACA 324
Query: 521 GHDR 524
D
Sbjct: 325 SFDN 328
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSL--LLWRCLVVYKGHGHPVWDIKFSPHGYY 516
H G V + ++PD + +++C D +W+L W+ +V ++++P+
Sbjct: 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 517 FASAGHDRMARL--------WATDSY--HPLRLFVGHYSDVDCVQFHPNSNYVATGSSDR 566
FA R+ + W + P+R S V + +HPNS +A GS D
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIR------STVLSLDWHPNSVLLAAGSCDF 164
Query: 567 TIRL 570
R+
Sbjct: 165 KCRI 168
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 462 PVRKLSFSPDRSLLLSCSQDNTIRLW--SLLLWRCLVVYKGHGHPVWDIKFSPHGYYFAS 519
P+ +++ DR+ + C ++ + ++ S W + K H V + ++P +
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 520 AGHDRMARLWATD--SYHPLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRL 570
G DR A +W ++ P + + CV++ PN A GS R I +
Sbjct: 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 439 DILVRIMDERNAETTRTLV---GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL 495
D V+I D R + + H PV FSPD + LL+ Q + IR++S W C
Sbjct: 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP 331
Query: 496 VVYKGHGH 503
+ H H
Sbjct: 332 LGLIPHPH 339
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 439 DILVRIMDERNAETTRTLV---GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL 495
D V+I D R + + H PV FSPD + LL+ Q + IR++S W C
Sbjct: 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP 331
Query: 496 VVYKGHGH 503
+ H H
Sbjct: 332 LGLIPHPH 339
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 439 DILVRIMDERNAETTRTLV---GHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCL 495
D V+I D R + + H PV FSPD + LL+ Q + IR++S W C
Sbjct: 273 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP 332
Query: 496 VVYKGHGH 503
+ H H
Sbjct: 333 LGLIPHPH 340
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 585 HKAPVYALSFSVCGRFLASAGGDGNVHMW 613
H V+++S+++ G L+SAG DG V +W
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 585 HKAPVYALSFSVCGRFLASAGGDGNVHMW 613
H V+++S+++ G L+SAG DG V +W
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 585 HKAPVYALSFSVCGRFLASAGGDGNVHMW 613
H V+++S+++ G L+SAG DG V +W
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 52/218 (23%)
Query: 454 RTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLL---LWRCLVVYKGHGHPVWDIKF 510
RT H+ V + ++P + +++CSQD ++ W+ +V +++
Sbjct: 49 RTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRW 108
Query: 511 SPHGYYFASAGHDRMARL--------WATDSY--HPLRLFVGHYSDVDCVQFHPNSNYVA 560
SP+ FA R+ + W + PLR S + + +HPN+ +A
Sbjct: 109 SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR------STILSLDWHPNNVLLA 162
Query: 561 TGSSDRTIRLWDCVTGSHVRLLTGH-KAPVYA--LSF-SVCGRFLASAGGDGNVHMWDLS 616
G +DR V ++VR + +A V+ L F +VC + +GG W
Sbjct: 163 AGCADRKAY----VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGG------W--- 207
Query: 617 NXXXXXXXXXXXDVVRALCFSRDGNILASSGQDCSVKL 654
V A+ FS GN LA +G D SV +
Sbjct: 208 --------------VHAVGFSPSGNALAYAGHDSSVTI 231
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 584 GHKAPVYALSFSVCGRFLASAGGDGNVHMWDL 615
H + V +LSF+ G L SAG DG + WD+
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 32/124 (25%)
Query: 449 NAETTRTLVGHEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYK--------- 499
N E+ +++ + +R + FSP SLL N+ C+ +Y+
Sbjct: 222 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF--------GCITLYETEFGERIGS 273
Query: 500 ---------------GHGHPVWDIKFSPHGYYFASAGHDRMARLWATDSYHPLRLFVGHY 544
H V + F+ G SAG D R W + + H
Sbjct: 274 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 333
Query: 545 SDVD 548
D++
Sbjct: 334 DDIE 337
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 584 GHKAPVYALSFSVCGRFLASAGGDGNVHMWDL 615
H + V +LSF+ G L SAG DG + WD+
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 330
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 65/170 (38%), Gaps = 19/170 (11%)
Query: 459 HEGPVRKLSFSPDRSLLLSCSQDNTIRLWSLLLWRCLVVYKGHGHPVWDIKFSPH-GYYF 517
H+ V +S + +S S+D I++W L L Y+ H V + SPH F
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 518 ASAGHDRMARLWATDSYHPLRLFVGHYSDVDC---------VQFHPNSNYVAT-GSSDRT 567
S D LW T P S + C + +HP + V G + T
Sbjct: 186 LSCSEDNRILLWDTRCPKP-------ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238
Query: 568 IRLWDCVTGSHVRLLTGHKAPVYALSFSV-CGRFLASAGGDGNVHMWDLS 616
+ L D + S V H V L FS FLAS D ++ + D S
Sbjct: 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 501 HGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP---NS 556
G V D++FSP G + + G DR + S L+ V F +S
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 264
Query: 557 NYVATGSSDRTIRLWDCVTGSHVRLLT 583
AT +D TIR+WD T V+ T
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWT 291
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 501 HGHPVWDIKFSP-HGYYFASAGHDRMARLWATDSYHPLRLFVGHYSDVDCVQFHP---NS 556
G V D++FSP G + + G DR + S L+ V F +S
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 264
Query: 557 NYVATGSSDRTIRLWDCVTGSHVRLLT 583
AT +D TIR+WD T V+ T
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWT 291
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 536 PLRLFVGHYSDVDCVQFHPNSNYVATGSSDRTIRLW---DCVTGSHVRLLTGHKAPVYAL 592
P+ V +DV ++ ++ T D I++ C + L GHK V ++
Sbjct: 190 PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD--KWLFGHKHFVSSI 247
Query: 593 SFSVCGR--FLASAGGDGNVHMWD 614
CG+ L SAGGD + WD
Sbjct: 248 ---CCGKDYLLLSAGGDDKIFAWD 268
>pdb|2Y4Q|A Chain A, Solution Structure Of The Ef-Hand Domain Of Human
Polycystin 2
Length = 79
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 84 GKAPDKNTLITMLKLLRQYNLRGTEEQLKKEINVNDLGIDPNDSEIGDLLSAYESEGDPN 143
G + KNT+ + + LRQ + ++L++++ G D+EI + + Y+ +GD
Sbjct: 1 GGSLKKNTVDDISESLRQGGGKLNFDELRQDLK----GKGHTDAEIEAIFTKYDQDGDQE 56
Query: 144 LYEDAYQDLKKFIE 157
L E +Q ++ +E
Sbjct: 57 LTEHEHQQMRDDLE 70
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 543 HYSDVDCVQFHPNSNYVATGSSDR---TIRLWDCVTGSHVRLLTGHKA-PVYALSF---S 595
+Y+ DC ++ +V G+ R I+L++ G L KA P+ +F S
Sbjct: 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATS 77
Query: 596 VCGRFLASAGGDGNVHMWDL 615
+ R+LA+ GN+H+W+L
Sbjct: 78 LQQRYLATGDFGGNLHIWNL 97
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 165 YELGLVLYPVLVHMYIELVYNGHEHQATEMLHKHLMDHEPHYQEDLRK 212
Y +G+VLY +LV E +NG A + KH+ D P+ D+RK
Sbjct: 196 YSIGIVLYEMLVG---EPPFNGE--TAVSIAIKHIQDSVPNVTTDVRK 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,472,733
Number of Sequences: 62578
Number of extensions: 762345
Number of successful extensions: 3390
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2073
Number of HSP's gapped (non-prelim): 461
length of query: 711
length of database: 14,973,337
effective HSP length: 106
effective length of query: 605
effective length of database: 8,340,069
effective search space: 5045741745
effective search space used: 5045741745
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)