BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14441
         (365 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H3O|B Chain B, Crystal Structure Of The Human Taf4-Taf12
           (Tafii135-Tafii20) Complex
 pdb|1H3O|D Chain D, Crystal Structure Of The Human Taf4-Taf12
           (Tafii135-Tafii20) Complex
          Length = 76

 Score = 74.7 bits (182), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 52/72 (72%)

Query: 260 ILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDL 319
           +L K KL +L+R+VD   Q+DE+V +   +IA+DF++++V  ACQLA+HR SSTL+ KD+
Sbjct: 5   VLTKKKLQDLVREVDPNEQLDEDVEEXLLQIADDFIESVVTAACQLARHRKSSTLEVKDV 64

Query: 320 QFVLAKDWNISI 331
           Q  L + WN  I
Sbjct: 65  QLHLERQWNXWI 76


>pdb|4GPQ|A Chain A, Structural Insights Into Inhibition Of The Bivalent
           Menin-Mll Interaction By Small Molecules In Leukemia
 pdb|4GQ3|A Chain A, Human Menin With Bound Inhibitor Mi-2
 pdb|4GQ4|A Chain A, Human Menin With Bound Inhibitor Mi-2-2
 pdb|4GQ6|A Chain A, Human Menin In Complex With Mll Peptide
          Length = 489

 Score = 36.6 bits (83), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 280 DEEVYDTFSEIANDFVDNIVHRACQL--AKHRGSSTLDPK 317
           DEE+Y  F E+AND + N++  A  L  A  +GS+  DP+
Sbjct: 342 DEEIYKEFFEVANDVIPNLLKEAASLLEAGSQGSALQDPE 381


>pdb|3RE2|A Chain A, Crystal Structure Of Menin Reveals The Binding Site For
           Mixed Lineage Leukemia (Mll) Protein
          Length = 472

 Score = 36.2 bits (82), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 280 DEEVYDTFSEIANDFVDNIVHRACQLAKHRGSS----TLDPKDLQFVL 323
           DEE+Y  F EIAND + NI+  A   A   G+     T DPK    VL
Sbjct: 335 DEEMYKEFHEIANDLIPNILKDAVAKADPSGTGSTNLTSDPKFFALVL 382


>pdb|3U84|A Chain A, Crystal Structure Of Human Menin
 pdb|3U84|B Chain B, Crystal Structure Of Human Menin
 pdb|3U85|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1
 pdb|3U86|A Chain A, Crystal Structure Of Human Menin In Complex With Jund
 pdb|3U88|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1 And
           Ledgf
 pdb|3U88|B Chain B, Crystal Structure Of Human Menin In Complex With Mll1 And
           Ledgf
          Length = 550

 Score = 32.0 bits (71), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 280 DEEVYDTFSEIANDFVDNIVHRACQL 305
           DEE+Y  F E+AND + N++  A  L
Sbjct: 357 DEEIYKEFFEVANDVIPNLLKEAASL 382


>pdb|2BOE|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
           From Thermobifida Fusca
 pdb|2BOF|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
           From Thermobifida Fusca In Complex With Cellotetrose
 pdb|2BOG|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
           From Thermobifida Fusca In Complex With Methyl
           Cellobiosyl- 4-Thio-Beta-Cellobioside
          Length = 286

 Score = 28.1 bits (61), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 127 RSHAYSKKPPVTIDDLP-VPQGSWKAHYDKQNTKYNIQLLVGTVSLAATIGYLAVSDV 183
           R++    + PV  D +  VPQG+W AH++       +  L+     A  I  L VS+ 
Sbjct: 18  RNNPNDPRTPVIRDRIASVPQGTWFAHHNPGQITGQVDALMSAAQAAGKIPILVVSNA 75


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,981,457
Number of Sequences: 62578
Number of extensions: 380582
Number of successful extensions: 880
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 874
Number of HSP's gapped (non-prelim): 8
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)