BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14441
(365 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VE65|TAF12_MOUSE Transcription initiation factor TFIID subunit 12 OS=Mus musculus
GN=Taf12 PE=1 SV=1
Length = 161
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 85/111 (76%)
Query: 254 STPNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSST 313
S N+Q+L K KL +L+R+VD Q+DE+V + +IA+DF++++V ACQLA+HR SST
Sbjct: 51 SPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSST 110
Query: 314 LDPKDLQFVLAKDWNISIPGYGTDELKPYKRPMATEAHKQRLALIRKHLKK 364
L+ KD+Q L + WN+ IPG+G++E++PYK+ TEAHKQR+ALIRK KK
Sbjct: 111 LEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161
>sp|Q16514|TAF12_HUMAN Transcription initiation factor TFIID subunit 12 OS=Homo sapiens
GN=TAF12 PE=1 SV=1
Length = 161
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 85/111 (76%)
Query: 254 STPNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSST 313
S N+Q+L K KL +L+R+VD Q+DE+V + +IA+DF++++V ACQLA+HR SST
Sbjct: 51 SPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSST 110
Query: 314 LDPKDLQFVLAKDWNISIPGYGTDELKPYKRPMATEAHKQRLALIRKHLKK 364
L+ KD+Q L + WN+ IPG+G++E++PYK+ TEAHKQR+ALIRK KK
Sbjct: 111 LEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161
>sp|Q3T174|TAF12_BOVIN Transcription initiation factor TFIID subunit 12 OS=Bos taurus
GN=TAF12 PE=2 SV=1
Length = 161
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 85/111 (76%)
Query: 254 STPNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSST 313
S N+Q+L K KL +L+R+VD Q+DE+V + +IA+DF++++V ACQLA+HR SST
Sbjct: 51 SPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSST 110
Query: 314 LDPKDLQFVLAKDWNISIPGYGTDELKPYKRPMATEAHKQRLALIRKHLKK 364
L+ KD+Q L + WN+ IPG+G++E++PYK+ TEAHKQR+ALIRK KK
Sbjct: 111 LEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161
>sp|Q91858|TAF12_XENLA Transcription initiation factor TFIID subunit 12 OS=Xenopus laevis
GN=taf12 PE=2 SV=1
Length = 164
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 85/112 (75%)
Query: 253 SSTPNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSS 312
+S +Q+L K KL +L+R+VD Q+DE+V + +IA+DF++++V ACQLA+HR S+
Sbjct: 53 ASPEANQVLSKKKLHDLVREVDPNEQLDEDVEEMLLQIADDFIESVVSAACQLARHRKSN 112
Query: 313 TLDPKDLQFVLAKDWNISIPGYGTDELKPYKRPMATEAHKQRLALIRKHLKK 364
TL+ KD+Q L + WN+ IPG+G++E++PYK+ TEAHKQR+ALI+K KK
Sbjct: 113 TLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIKKTQKK 164
>sp|P49905|TAF12_DROME Transcription initiation factor TFIID subunit 12 OS=Drosophila
melanogaster GN=Taf12 PE=1 SV=1
Length = 196
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 85/126 (67%)
Query: 240 SPAAQVMQKTNMPSSTPNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIV 299
S ++ T+ + + N +L K +L EL+R+VD+T Q+DE+V + +I +DFV++ V
Sbjct: 71 SGGSKSSNHTSSAAGSENTPMLTKPRLTELVREVDTTTQLDEDVEELLLQIIDDFVEDTV 130
Query: 300 HRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGYGTDELKPYKRPMATEAHKQRLALIR 359
AKHR S+ ++ +D+Q + +N+ IPG+GTDEL+PYKR TEAHKQRLALIR
Sbjct: 131 KSTSAFAKHRKSNKIEVRDVQLHFERKYNMWIPGFGTDELRPYKRAAVTEAHKQRLALIR 190
Query: 360 KHLKKY 365
K +KKY
Sbjct: 191 KTIKKY 196
>sp|Q555L9|TAF12_DICDI Transcription initiation factor TFIID subunit 12 OS=Dictyostelium
discoideum GN=TAF12 PE=3 SV=2
Length = 627
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 259 QILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKD 318
++LGK KL EL++Q+ ++DE+ D S +A+DFV++ V AC LAKHR S+TL+ KD
Sbjct: 440 EVLGKRKLIELLQQISPNEKMDEDAEDILSVLADDFVESTVAFACTLAKHRNSTTLEVKD 499
Query: 319 LQFVLAKDWNISIPGYGT-DELKPYKRPMATEAHKQRLALIRKHL 362
LQ L K+WNI +PG+G ++ K +K+P E HK R+A ++K +
Sbjct: 500 LQCHLEKNWNIRVPGFGNVEQYKTFKKPHFPENHKLRVAAMKKSI 544
>sp|Q03761|TAF12_YEAST Transcription initiation factor TFIID subunit 12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF12 PE=1
SV=1
Length = 539
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 32/180 (17%)
Query: 207 SMLNSVDSDHSQVMNSFSNSMEVDQNSSQSSTQSPAAQVMQKTNMPS------------S 254
SMLN++ S S + ++ + +N S T++PA V ++N P+ +
Sbjct: 342 SMLNNISSSKSAIFKQTEPAIPISENIS---TKTPAP-VAYRSNRPTITGGSAMNASALN 397
Query: 255 TP-----------NDQILGKDKLDELMRQV-----DSTLQIDEEVYDTFSEIANDFVDNI 298
TP +++ K KL EL++ V D ID +V + ++A+DFV N+
Sbjct: 398 TPATTKLPPYEMDTQRVMSKRKLRELVKTVGIDEGDGETVIDGDVEELLLDLADDFVTNV 457
Query: 299 VHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGYGTDELKPYKRPMATEAHKQRLALI 358
+C+LAKHR S L+ +D+Q L ++WNI IPGY DE++ ++ ++ + Q+L I
Sbjct: 458 TAFSCRLAKHRKSDNLEARDIQLHLERNWNIRIPGYSADEIRSTRKWNPSQNYNQKLQSI 517
>sp|O13722|TAF12_SCHPO Transcription initiation factor TFIID subunit 12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf12 PE=1 SV=1
Length = 450
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 258 DQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPK 317
+++L K KL +L++Q+DS +I+ EV + EIA++FV+++ + AC+LAKHR S TLD +
Sbjct: 340 NRLLSKRKLHDLLQQIDSEEKIEPEVEELLLEIADEFVESVTNFACRLAKHRKSDTLDVR 399
Query: 318 DLQFVLAKDWNISIPGYGTDEL-KPYKRPMATEAHKQRLALI 358
D+Q L ++WNI +PG+ +D++ K ++ T +++Q+ I
Sbjct: 400 DVQLHLERNWNIRLPGFASDDIVKSARKTGPTPSYQQKQNAI 441
>sp|B1JKZ8|SYI_YERPY Isoleucine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=ileS PE=3 SV=1
Length = 938
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 152 HYDKQNTKYNIQL-LVGTVSLAATIGYLAVSD---VFIWNFFPPTLPKNEVLSFPAKDLS 207
+YDK + +++ V T ++AA G AV+ + IW P TLP N +S A+ L
Sbjct: 202 YYDKTSQSIDVRFNAVDTATVAAKFGVSAVNGPISLVIWTTTPWTLPANRAISLNAEYLY 261
Query: 208 MLNSVDSD 215
L V+ +
Sbjct: 262 QLVQVEGE 269
>sp|Q66ES4|SYI_YERPS Isoleucine--tRNA ligase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=ileS PE=3 SV=1
Length = 938
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 152 HYDKQNTKYNIQL-LVGTVSLAATIGYLAVSD---VFIWNFFPPTLPKNEVLSFPAKDLS 207
+YDK + +++ V T ++AA G AV+ + IW P TLP N +S A+ L
Sbjct: 202 YYDKTSQSIDVRFNAVDTATVAAKFGVSAVNGPISLVIWTTTPWTLPANRAISLNAEYLY 261
Query: 208 MLNSVDSD 215
L V+ +
Sbjct: 262 QLVQVEGE 269
>sp|A4TQF3|SYI_YERPP Isoleucine--tRNA ligase OS=Yersinia pestis (strain Pestoides F)
GN=ileS PE=3 SV=1
Length = 938
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 152 HYDKQNTKYNIQL-LVGTVSLAATIGYLAVSD---VFIWNFFPPTLPKNEVLSFPAKDLS 207
+YDK + +++ V T ++AA G AV+ + IW P TLP N +S A+ L
Sbjct: 202 YYDKTSQSIDVRFNAVDTATVAAKFGVSAVNGPISLVIWTTTPWTLPANRAISLNAEYLY 261
Query: 208 MLNSVDSD 215
L V+ +
Sbjct: 262 QLVQVEGE 269
>sp|Q1CMV1|SYI_YERPN Isoleucine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=ileS PE=3 SV=1
Length = 938
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 152 HYDKQNTKYNIQL-LVGTVSLAATIGYLAVSD---VFIWNFFPPTLPKNEVLSFPAKDLS 207
+YDK + +++ V T ++AA G AV+ + IW P TLP N +S A+ L
Sbjct: 202 YYDKTSQSIDVRFNAVDTATVAAKFGVSAVNGPISLVIWTTTPWTLPANRAISLNAEYLY 261
Query: 208 MLNSVDSD 215
L V+ +
Sbjct: 262 QLVQVEGE 269
>sp|A9R008|SYI_YERPG Isoleucine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=ileS PE=3 SV=1
Length = 938
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 152 HYDKQNTKYNIQL-LVGTVSLAATIGYLAVSD---VFIWNFFPPTLPKNEVLSFPAKDLS 207
+YDK + +++ V T ++AA G AV+ + IW P TLP N +S A+ L
Sbjct: 202 YYDKTSQSIDVRFNAVDTATVAAKFGVSAVNGPISLVIWTTTPWTLPANRAISLNAEYLY 261
Query: 208 MLNSVDSD 215
L V+ +
Sbjct: 262 QLVQVEGE 269
>sp|Q8ZIM0|SYI_YERPE Isoleucine--tRNA ligase OS=Yersinia pestis GN=ileS PE=3 SV=1
Length = 938
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 152 HYDKQNTKYNIQL-LVGTVSLAATIGYLAVSD---VFIWNFFPPTLPKNEVLSFPAKDLS 207
+YDK + +++ V T ++AA G AV+ + IW P TLP N +S A+ L
Sbjct: 202 YYDKTSQSIDVRFNAVDTATVAAKFGVSAVNGPISLVIWTTTPWTLPANRAISLNAEYLY 261
Query: 208 MLNSVDSD 215
L V+ +
Sbjct: 262 QLVQVEGE 269
>sp|B2K3M6|SYI_YERPB Isoleucine--tRNA ligase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=ileS PE=3 SV=1
Length = 938
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 152 HYDKQNTKYNIQL-LVGTVSLAATIGYLAVSD---VFIWNFFPPTLPKNEVLSFPAKDLS 207
+YDK + +++ V T ++AA G AV+ + IW P TLP N +S A+ L
Sbjct: 202 YYDKTSQSIDVRFNAVDTATVAAKFGVSAVNGPISLVIWTTTPWTLPANRAISLNAEYLY 261
Query: 208 MLNSVDSD 215
L V+ +
Sbjct: 262 QLVQVEGE 269
>sp|Q1C0J3|SYI_YERPA Isoleucine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=ileS PE=3 SV=1
Length = 938
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 152 HYDKQNTKYNIQL-LVGTVSLAATIGYLAVSD---VFIWNFFPPTLPKNEVLSFPAKDLS 207
+YDK + +++ V T ++AA G AV+ + IW P TLP N +S A+ L
Sbjct: 202 YYDKTSQSIDVRFNAVDTATVAAKFGVSAVNGPISLVIWTTTPWTLPANRAISLNAEYLY 261
Query: 208 MLNSVDSD 215
L V+ +
Sbjct: 262 QLVQVEGE 269
>sp|Q9Z8N1|PHSG_CHLPN Glycogen phosphorylase OS=Chlamydia pneumoniae GN=glgP PE=3 SV=1
Length = 824
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 301 RACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGYGTD 337
R RG D D Q VLA ++I IPGYG D
Sbjct: 195 RVIHYTDSRGKQVADLVDTQEVLAMAYDIPIPGYGND 231
>sp|A7FMD7|SYI_YERP3 Isoleucine--tRNA ligase OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=ileS PE=3 SV=1
Length = 938
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 152 HYDKQNTKYNIQL-LVGTVSLAATIGYLAVSD---VFIWNFFPPTLPKNEVLSFPAKDLS 207
+YDK + +++ V T ++AA G V+ + IW P TLP N +S A+ L
Sbjct: 202 YYDKTSQSIDVRFNAVDTATVAAKFGVSVVNGPISLVIWTTTPWTLPANRAISLNAEYLY 261
Query: 208 MLNSVDSD 215
L V+ +
Sbjct: 262 QLVQVEGE 269
>sp|Q499Y0|XPO4_XENLA Exportin-4 OS=Xenopus laevis GN=xpo4 PE=2 SV=1
Length = 1150
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 177 YLAVSD-VFIWNFFPPTLPKNEVLSFPAKDLSMLNSVDSDHSQVMNS 222
YLA+++ V WNF PP L ++ + F + ML +S ++NS
Sbjct: 225 YLALANQVLSWNFLPPNLGRHYIAMFESSQNVMLKPTESWRETLLNS 271
>sp|Q10057|PDI1_SCHPO Putative protein disulfide-isomerase C1F5.02 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1F5.02 PE=3 SV=1
Length = 492
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 220 MNSFSNSMEVDQNSSQSSTQSPAAQVMQKTNMPSSTPNDQILGKDKLDELMRQVDSTLQI 279
+N F N ++ Q S + + M+K +P+ P + KD L+ + + D +
Sbjct: 98 LNVFKNGKQISQYSGPRKHDA-LVKYMRKQLLPTVKP----ISKDTLENFVEKADDLAVV 152
Query: 280 ----DEEVYDTFSEIANDFVDNIVHRAC---QLAKHRGSS 312
D+++ DT++E+A D+ V A +LAK GS+
Sbjct: 153 AFFKDQKLNDTYTEVAEVMKDDFVFAASDDKELAKSLGSN 192
>sp|O28779|HAF2_ARCFU Probable archaeal histone A1-2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-2 PE=3 SV=1
Length = 67
Score = 31.6 bits (70), Expect = 9.8, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 266 LDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324
+D L+R+ + ++ + + E+ D+ + +A ++AKH G T+ D++ L+
Sbjct: 9 VDRLIRKAGAE-RVSADAVEKMVEVLEDYAITVAKKAVEIAKHSGRKTVTADDIKLALS 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,048,602
Number of Sequences: 539616
Number of extensions: 5111250
Number of successful extensions: 15886
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 15817
Number of HSP's gapped (non-prelim): 108
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)