Query psy14441
Match_columns 365
No_of_seqs 150 out of 214
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 19:57:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3o_B Transcription initiatio 100.0 1.9E-32 6.6E-37 217.1 8.8 76 256-331 1-76 (76)
2 2hue_C Histone H4; mini beta s 98.4 6.6E-07 2.3E-11 70.8 6.8 77 257-335 7-83 (84)
3 3b0c_W CENP-W, centromere prot 98.3 1.1E-06 3.7E-11 68.2 7.4 70 257-326 1-70 (76)
4 1b67_A Protein (histone HMFA); 98.3 1.6E-06 5.5E-11 65.3 7.3 64 261-325 3-66 (68)
5 1id3_B Histone H4; nucleosome 98.3 1.6E-06 5.4E-11 71.4 7.1 78 256-335 24-101 (102)
6 1ku5_A HPHA, archaeal histon; 98.3 2E-06 6.7E-11 65.5 6.9 64 260-324 6-69 (70)
7 1tzy_D Histone H4-VI; histone- 98.2 3.3E-06 1.1E-10 69.1 7.3 79 255-335 24-102 (103)
8 2yfw_B Histone H4, H4; cell cy 98.1 3.5E-06 1.2E-10 69.1 6.6 78 256-335 25-102 (103)
9 3b0c_T CENP-T, centromere prot 98.0 1.2E-05 4.1E-10 67.0 6.9 74 256-330 3-76 (111)
10 1n1j_A NF-YB; histone-like PAI 98.0 2.6E-05 8.8E-10 62.2 8.3 69 256-324 4-73 (93)
11 1taf_A TFIID TBP associated fa 97.9 4.9E-05 1.7E-09 59.0 8.0 62 264-326 5-66 (68)
12 3nqj_A Histone H3-like centrom 97.7 8.7E-05 3E-09 59.6 7.3 64 260-323 3-72 (82)
13 2hue_B Histone H3; mini beta s 97.6 0.00012 4.2E-09 58.1 7.2 65 260-324 3-71 (77)
14 1f1e_A Histone fold protein; a 97.6 0.00012 4.3E-09 64.4 8.0 71 256-327 78-148 (154)
15 3r45_A Histone H3-like centrom 97.6 8.6E-05 2.9E-09 66.0 6.4 68 256-323 73-146 (156)
16 1jfi_B DR1 protein, transcript 97.5 0.0003 1E-08 63.5 9.1 71 254-324 9-79 (179)
17 2yfv_A Histone H3-like centrom 97.5 0.0002 6.8E-09 59.3 6.3 68 256-323 23-97 (100)
18 1taf_B TFIID TBP associated fa 97.4 0.00089 3E-08 52.3 8.8 66 258-324 4-69 (70)
19 3nqu_A Histone H3-like centrom 97.4 0.0003 1E-08 61.5 6.7 68 256-323 57-130 (140)
20 1tzy_C Histone H3; histone-fol 97.4 0.0005 1.7E-08 59.7 7.8 69 256-324 58-130 (136)
21 2byk_B Chrac-14; nucleosome sl 97.3 0.00068 2.3E-08 57.7 7.4 70 257-326 6-76 (128)
22 3b0b_B CENP-S, centromere prot 97.2 0.00045 1.5E-08 57.8 5.2 59 268-326 27-87 (107)
23 2ly8_A Budding yeast chaperone 97.1 0.00091 3.1E-08 57.1 6.9 62 274-336 60-121 (121)
24 1f1e_A Histone fold protein; a 97.1 0.0014 4.6E-08 57.9 7.6 66 260-325 4-69 (154)
25 3v9r_A MHF1, uncharacterized p 97.1 0.0016 5.4E-08 53.0 7.4 60 268-327 20-81 (90)
26 2l5a_A Histone H3-like centrom 97.0 0.0019 6.7E-08 60.5 8.1 72 262-335 155-234 (235)
27 2nqb_D Histone H2B; nucleosome 96.9 0.0017 5.9E-08 55.7 6.6 60 265-324 38-97 (123)
28 1n1j_B NF-YC; histone-like PAI 96.9 0.0027 9.3E-08 51.2 7.2 77 254-330 13-89 (97)
29 1tzy_B Histone H2B; histone-fo 96.8 0.0024 8.3E-08 55.0 6.5 60 265-324 41-100 (126)
30 4dra_A Centromere protein S; D 96.7 0.0024 8.1E-08 54.1 5.8 52 276-327 45-96 (113)
31 4g92_C HAPE; transcription fac 96.3 0.0085 2.9E-07 50.2 6.9 73 257-329 38-110 (119)
32 2jss_A Chimera of histone H2B. 96.3 0.012 4.1E-07 52.7 8.2 62 264-325 7-68 (192)
33 3b0b_C CENP-X, centromere prot 96.2 0.015 5E-07 46.5 7.3 68 256-323 4-73 (81)
34 3vh5_A CENP-S; histone fold, c 96.2 0.0059 2E-07 53.5 5.2 55 275-329 36-90 (140)
35 1jfi_A Transcription regulator 96.1 0.0099 3.4E-07 48.2 6.1 74 256-330 7-81 (98)
36 4dra_E Centromere protein X; D 95.9 0.031 1.1E-06 45.1 8.1 70 254-323 6-77 (84)
37 2l5a_A Histone H3-like centrom 95.9 0.0089 3.1E-07 56.1 5.4 71 259-330 10-87 (235)
38 2nqb_C Histone H2A; nucleosome 94.1 0.12 4E-06 43.8 6.9 69 257-325 20-88 (123)
39 2f8n_G Core histone macro-H2A. 94.0 0.12 4.2E-06 43.5 6.9 69 257-325 19-87 (120)
40 1tzy_A Histone H2A-IV; histone 93.8 0.14 4.8E-06 43.8 6.9 69 257-325 22-90 (129)
41 2f8n_K Histone H2A type 1; nuc 93.6 0.14 4.7E-06 45.0 6.6 68 257-324 41-108 (149)
42 1id3_C Histone H2A.1; nucleoso 93.6 0.13 4.5E-06 44.0 6.3 70 255-324 20-89 (131)
43 2byk_A Chrac-16; nucleosome sl 92.4 0.16 5.3E-06 43.9 5.2 75 256-330 15-90 (140)
44 1f66_C Histone H2A.Z; nucleoso 92.3 0.28 9.6E-06 41.8 6.5 69 257-325 24-93 (128)
45 2jss_A Chimera of histone H2B. 91.9 0.47 1.6E-05 42.4 7.8 69 257-325 102-171 (192)
46 1bh9_B TAFII28; histone fold, 91.8 0.78 2.7E-05 37.0 8.2 63 260-323 16-79 (89)
47 1v54_K IHQ, cytochrome C oxida 86.3 0.64 2.2E-05 35.3 3.6 31 161-191 15-45 (56)
48 2y69_K Cytochrome C oxidase po 82.5 1.1 3.7E-05 36.1 3.6 67 108-191 3-69 (80)
49 3v9r_B MHF2, uncharacterized p 79.7 2.5 8.6E-05 34.6 4.9 60 261-320 2-70 (88)
50 3uk6_A RUVB-like 2; hexameric 73.4 12 0.00042 33.6 8.2 67 261-327 259-331 (368)
51 1h3o_A Transcription initiatio 65.5 4.8 0.00016 31.8 3.3 48 264-312 10-57 (75)
52 2qby_A CDC6 homolog 1, cell di 62.6 35 0.0012 30.1 8.7 66 261-326 197-272 (386)
53 2ly8_A Budding yeast chaperone 60.8 16 0.00055 31.0 5.9 50 260-309 1-57 (121)
54 2v1u_A Cell division control p 57.4 16 0.00056 32.4 5.7 66 261-326 201-276 (387)
55 2r44_A Uncharacterized protein 56.0 43 0.0015 29.9 8.2 74 257-331 206-302 (331)
56 1g8p_A Magnesium-chelatase 38 54.4 43 0.0015 29.6 7.9 55 276-330 265-326 (350)
57 1bh9_A TAFII18; histone fold, 47.5 56 0.0019 23.2 6.0 41 264-304 4-44 (45)
58 1fnn_A CDC6P, cell division co 46.2 43 0.0015 29.8 6.6 66 261-326 193-274 (389)
59 2qby_B CDC6 homolog 3, cell di 43.2 82 0.0028 28.1 8.0 64 261-326 197-270 (384)
60 3nbx_X ATPase RAVA; AAA+ ATPas 42.0 1.2E+02 0.0043 30.2 9.8 63 257-320 205-280 (500)
61 3bos_A Putative DNA replicatio 41.0 83 0.0028 25.7 7.1 60 264-324 177-241 (242)
62 3h4m_A Proteasome-activating n 37.0 43 0.0015 29.0 4.9 69 260-328 187-260 (285)
63 1r6b_X CLPA protein; AAA+, N-t 35.8 1.7E+02 0.0057 29.7 9.7 76 263-338 351-445 (758)
64 1lv7_A FTSH; alpha/beta domain 34.6 41 0.0014 28.9 4.4 64 262-325 183-251 (257)
65 1elk_A Target of MYB1; superhe 34.2 76 0.0026 26.9 6.0 63 259-332 92-156 (157)
66 3k1j_A LON protease, ATP-depen 33.1 1.1E+02 0.0039 30.5 7.9 50 276-325 312-374 (604)
67 1w5s_A Origin recognition comp 33.0 1.5E+02 0.0052 26.6 8.1 67 260-326 214-293 (412)
68 2c9o_A RUVB-like 1; hexameric 32.3 96 0.0033 29.7 7.0 70 259-328 364-439 (456)
69 1wwi_A Hypothetical protein TT 31.1 82 0.0028 27.8 5.7 61 260-321 2-62 (148)
70 3vlf_B 26S protease regulatory 30.5 25 0.00087 26.8 2.1 42 285-326 26-71 (88)
71 3f9v_A Minichromosome maintena 28.9 36 0.0012 34.4 3.5 64 259-324 500-585 (595)
72 1x5b_A Signal transducing adap 28.4 1.3E+02 0.0045 25.7 6.6 70 259-341 90-160 (163)
73 1v54_D Cytochrome C oxidase su 27.6 15 0.00051 32.2 0.4 43 107-151 34-80 (147)
74 2y69_D Cytochrome C oxidase su 27.1 15 0.00052 32.9 0.4 44 106-151 55-102 (169)
75 1r4v_A Hypothetical protein AQ 25.4 73 0.0025 28.7 4.4 63 258-321 24-86 (171)
76 2qz4_A Paraplegin; AAA+, SPG7, 24.7 68 0.0023 27.1 4.0 66 261-326 177-249 (262)
77 2jv4_A Peptidyl-prolyl CIS/tra 24.4 8.1 0.00028 28.2 -1.6 17 138-155 2-18 (54)
78 1fh1_A NODF, nodulation protei 24.4 41 0.0014 25.4 2.3 26 307-332 39-64 (92)
79 3j20_Q 30S ribosomal protein S 24.2 15 0.00051 32.7 -0.2 42 21-62 81-122 (158)
80 1ixz_A ATP-dependent metallopr 24.1 55 0.0019 28.0 3.4 61 263-323 188-253 (254)
81 2zyc_A Peptidoglycan hydrolase 23.4 42 0.0014 29.2 2.5 42 290-332 1-42 (170)
82 3fi7_A LMO1076 protein; lister 22.4 74 0.0025 28.3 3.9 55 277-332 10-70 (183)
83 3aji_B S6C, proteasome (prosom 21.3 73 0.0025 23.4 3.2 43 295-342 40-82 (83)
84 1iy2_A ATP-dependent metallopr 20.8 53 0.0018 28.8 2.6 62 262-323 211-277 (278)
85 3f8t_A Predicted ATPase involv 20.8 1.7E+02 0.0057 30.2 6.5 68 257-324 390-481 (506)
86 2chg_A Replication factor C sm 20.8 1.4E+02 0.0048 23.5 4.9 62 261-324 161-224 (226)
87 3kw6_A 26S protease regulatory 20.2 78 0.0027 23.1 3.1 43 285-327 28-74 (78)
No 1
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=1.9e-32 Score=217.13 Aligned_cols=76 Identities=46% Similarity=0.786 Sum_probs=73.1
Q ss_pred CCCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCccc
Q psy14441 256 PNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISI 331 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~I 331 (365)
++++||+|++|++||++|||+++|||||||+|+++|||||++|+++||+|||||||++||+|||||||||+|||+|
T Consensus 1 ~s~~vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~wni~i 76 (76)
T 1h3o_B 1 GSHMVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWI 76 (76)
T ss_dssp --CCSSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHTCCCC
T ss_pred CCcccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhcCCcC
Confidence 3679999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.37 E-value=6.6e-07 Score=70.85 Aligned_cols=77 Identities=21% Similarity=0.386 Sum_probs=70.6
Q ss_pred CCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcccCCCC
Q psy14441 257 NDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGYG 335 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~IPGfg 335 (365)
+.+-|++..+..|++.... ..+.+|+.+.|.++.++|+++|+..|..+|+|-|-.||+..||.+.|++. |..+=||+
T Consensus 7 ~~~~ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~-g~~lYgf~ 83 (84)
T 2hue_C 7 NIQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ-GRTLYGFG 83 (84)
T ss_dssp GCCSSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT-CEEEESCC
T ss_pred cCCCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc-CCCCCCCC
Confidence 4566999999999999854 88999999999999999999999999999999999999999999999998 66666775
No 3
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.35 E-value=1.1e-06 Score=68.25 Aligned_cols=70 Identities=10% Similarity=0.072 Sum_probs=64.5
Q ss_pred CCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhc
Q psy14441 257 NDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKD 326 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~ 326 (365)
|.+.|++..+..+++++.|+..+..|+.++|.+.+++||..+++.|..+|++.+..||..+||+..++.-
T Consensus 1 g~~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 1 GRRTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp ---CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999999999999999999999999999998764
No 4
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.31 E-value=1.6e-06 Score=65.30 Aligned_cols=64 Identities=16% Similarity=0.373 Sum_probs=61.5
Q ss_pred CChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhh
Q psy14441 261 LGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAK 325 (365)
Q Consensus 261 L~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER 325 (365)
|++..++.|++++ +...+..|+.++|.+.+++|+..+++.|...|+|-|-.||..+||++.+++
T Consensus 3 lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 3 LPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp SCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 7899999999999 779999999999999999999999999999999999999999999999875
No 5
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.27 E-value=1.6e-06 Score=71.38 Aligned_cols=78 Identities=18% Similarity=0.385 Sum_probs=70.8
Q ss_pred CCCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcccCCCC
Q psy14441 256 PNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGYG 335 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~IPGfg 335 (365)
++.+-|++..+..|++.... ..+.+|+.+.|.++.++|+++|+..|..+|+|-+-.||+..||.+.|+|. +..+=||+
T Consensus 24 ~~i~~ip~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~-g~~lYGf~ 101 (102)
T 1id3_B 24 DNIQGITKPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ-GRTLYGFG 101 (102)
T ss_dssp CCGGGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT-TCCEESSC
T ss_pred hccCCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc-CCCCCCCC
Confidence 55667999999999999754 88999999999999999999999999999999999999999999999998 45665775
No 6
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.26 E-value=2e-06 Score=65.53 Aligned_cols=64 Identities=20% Similarity=0.430 Sum_probs=60.8
Q ss_pred CCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 260 ILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 260 VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
-|++..+..|+++. +...+++++.+.|.+++++|+.+|+..|...|+|-|-.||..+||++.++
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 58999999999997 56899999999999999999999999999999999999999999999886
No 7
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.19 E-value=3.3e-06 Score=69.10 Aligned_cols=79 Identities=20% Similarity=0.373 Sum_probs=71.3
Q ss_pred CCCCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcccCCC
Q psy14441 255 TPNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGY 334 (365)
Q Consensus 255 ~~~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~IPGf 334 (365)
-+..+-|++..+..|++.... ..+.+++.+.|.++.++|+++|+..|...|+|-+-.||+..||.+.|++. +..+=||
T Consensus 24 r~~~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~-g~~lYGf 101 (103)
T 1tzy_D 24 RDNIQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ-GRTLYGF 101 (103)
T ss_dssp CCGGGGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT-TCEEESC
T ss_pred hhhcccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc-CCCCcCC
Confidence 445566999999999999876 79999999999999999999999999999999999999999999999998 4555577
Q ss_pred C
Q psy14441 335 G 335 (365)
Q Consensus 335 g 335 (365)
+
T Consensus 102 ~ 102 (103)
T 1tzy_D 102 G 102 (103)
T ss_dssp C
T ss_pred C
Confidence 5
No 8
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.15 E-value=3.5e-06 Score=69.08 Aligned_cols=78 Identities=19% Similarity=0.374 Sum_probs=63.7
Q ss_pred CCCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcccCCCC
Q psy14441 256 PNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGYG 335 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~IPGfg 335 (365)
+..+-|++..+..|++.... ..+.+++.+.|.++.++|+++|+..|...|+|-+-.||+..||.+.|++.. ..+=||+
T Consensus 25 ~~~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g-~~lYGf~ 102 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFG 102 (103)
T ss_dssp -----CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--------
T ss_pred hhhccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCcCCC
Confidence 44555999999999999876 799999999999999999999999999999999999999999999999984 4455664
No 9
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.99 E-value=1.2e-05 Score=67.01 Aligned_cols=74 Identities=8% Similarity=0.288 Sum_probs=63.5
Q ss_pred CCCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcc
Q psy14441 256 PNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNIS 330 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~ 330 (365)
+...-|++..+..|++.. +...+.+++.+.|.+++.+|+++|+..|..+|+|-|-.||+..||.+.++|+-...
T Consensus 3 ~~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~ 76 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVT 76 (111)
T ss_dssp -------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSB
T ss_pred CCCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcc
Confidence 345678999999999997 67899999999999999999999999999999999999999999999999976654
No 10
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.97 E-value=2.6e-05 Score=62.24 Aligned_cols=69 Identities=17% Similarity=0.317 Sum_probs=63.1
Q ss_pred CCCCCCChhHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 256 PNDQILGKDKLDELMRQVDS-TLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqIDp-~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
+....|++..+..++++..| ...+..|+-++|.+.+++||..+++.|...|+|.|..||..+||...++
T Consensus 4 ~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 4 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp ---CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 35668999999999999944 6899999999999999999999999999999999999999999999998
No 11
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.87 E-value=4.9e-05 Score=59.02 Aligned_cols=62 Identities=16% Similarity=0.307 Sum_probs=55.4
Q ss_pred hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhc
Q psy14441 264 DKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKD 326 (365)
Q Consensus 264 rkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~ 326 (365)
+-+..++++.+. +..+|+|...|++++..++.+|+..|..+|+|.|..||+..||++.++..
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 346677777444 79999999999999999999999999999999999999999999998764
No 12
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=97.71 E-value=8.7e-05 Score=59.61 Aligned_cols=64 Identities=25% Similarity=0.358 Sum_probs=60.5
Q ss_pred CCChhHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHh
Q psy14441 260 ILGKDKLDELMRQVD------STLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVL 323 (365)
Q Consensus 260 VL~KrkLqeLVrqID------p~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~L 323 (365)
+|+|.-.+.||++|. ....+.+++.++|.+.+++|+-++.+.+-..|.|.|--||..||+|+..
T Consensus 3 LI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ 72 (82)
T 3nqj_A 3 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLAR 72 (82)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHH
Confidence 688999999999997 4689999999999999999999999999999999999999999999975
No 13
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=97.65 E-value=0.00012 Score=58.06 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=60.5
Q ss_pred CCChhHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 260 ILGKDKLDELMRQVD----STLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 260 VL~KrkLqeLVrqID----p~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
+|+|.-.+.||++|. +...+..++.+.|.+.+++|+-.+.+.+...|.|.|--||..||+|+...
T Consensus 3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 688999999999992 46899999999999999999999999999999999999999999999863
No 14
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.64 E-value=0.00012 Score=64.42 Aligned_cols=71 Identities=10% Similarity=0.310 Sum_probs=66.8
Q ss_pred CCCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhcc
Q psy14441 256 PNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDW 327 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~w 327 (365)
..+..|++..+..++++- +...+..|+.+.|.++.++|+..|+..|..+|+|-|-.||..+||++.++++.
T Consensus 78 ~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~ 148 (154)
T 1f1e_A 78 YDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSM 148 (154)
T ss_dssp CCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred cccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcC
Confidence 355689999999999998 78899999999999999999999999999999999999999999999999874
No 15
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.60 E-value=8.6e-05 Score=65.96 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=61.7
Q ss_pred CCCCCCChhHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHh
Q psy14441 256 PNDQILGKDKLDELMRQVD------STLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVL 323 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqID------p~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~L 323 (365)
..+-+|.|.-.+.||++|. ....+..++.++|.+.+|+|+.++.+.+..+|.|.|--||..|||||..
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLAr 146 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLAR 146 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHH
Confidence 4556899999999999996 3578899999999999999999999999999999999999999999975
No 16
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.54 E-value=0.0003 Score=63.47 Aligned_cols=71 Identities=10% Similarity=0.312 Sum_probs=66.1
Q ss_pred CCCCCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 254 STPNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 254 s~~~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
++.....|++..+..+++++-|+..+..|+.++|.+.+.+||.-++..|..+|++.+..||...||...|+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~ 79 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE 79 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CchhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 45677889999999999999789999999999999999999999999999999999999999999999998
No 17
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.46 E-value=0.0002 Score=59.29 Aligned_cols=68 Identities=18% Similarity=0.297 Sum_probs=59.1
Q ss_pred CCCCCCChhHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHh
Q psy14441 256 PNDQILGKDKLDELMRQVDS-------TLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVL 323 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqIDp-------~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~L 323 (365)
.++-+|+|.-.+.||++|.. ...+..++.++|.+.+++|+-.+.+.+...|.|.|--||..+|||+..
T Consensus 23 st~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ 97 (100)
T 2yfv_A 23 STDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLAR 97 (100)
T ss_dssp -----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred cchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHH
Confidence 46678999999999999962 578999999999999999999999999999999999999999999975
No 18
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.39 E-value=0.00089 Score=52.25 Aligned_cols=66 Identities=12% Similarity=0.253 Sum_probs=61.6
Q ss_pred CCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 258 DQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 258 ~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
...+++..+..+.++++- +.+.+|+...|.+-++.-+..|+..|+++++|-|..+|...||...|+
T Consensus 4 ~s~lp~~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 457899999999999876 799999999999999999999999999999999999999999998874
No 19
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.37 E-value=0.0003 Score=61.45 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=62.4
Q ss_pred CCCCCCChhHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHh
Q psy14441 256 PNDQILGKDKLDELMRQVD------STLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVL 323 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqID------p~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~L 323 (365)
..+-+|.|.-.+.||++|. ....+..++.++|.+.+|+|+-++.+.+...|.|-|--||..+||||..
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLAr 130 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLAR 130 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHH
Confidence 4566899999999999997 4689999999999999999999999999999999999999999999975
No 20
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.35 E-value=0.0005 Score=59.70 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=63.9
Q ss_pred CCCCCCChhHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 256 PNDQILGKDKLDELMRQVD----STLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqID----p~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
..+-+|+|.-.+.||++|. +...+..++.++|.+.+|+|+-.+.+.+..+|.|.|--||..+||||...
T Consensus 58 st~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 4667999999999999992 46899999999999999999999999999999999999999999999863
No 21
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.26 E-value=0.00068 Score=57.72 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=62.0
Q ss_pred CCCCCChhHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhc
Q psy14441 257 NDQILGKDKLDELMRQVDS-TLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKD 326 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqIDp-~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~ 326 (365)
....|+...+..++++.+| ...+..|+-++|.+.++.||..++..|...|++.+..||..+||...|++.
T Consensus 6 ~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp -----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 4567999999999998776 689999999999999999999999999999999999999999999999974
No 22
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.15 E-value=0.00045 Score=57.80 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=52.4
Q ss_pred HHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhc
Q psy14441 268 ELMRQVD--STLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKD 326 (365)
Q Consensus 268 eLVrqID--p~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~ 326 (365)
.++++.. .+..+.+++...|.+++.+|+.++...+..+|+|-|-.||+..||.|.++|+
T Consensus 27 rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 27 CLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 3444443 3578999999999999999999999999999999999999999999999885
No 23
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00091 Score=57.14 Aligned_cols=62 Identities=15% Similarity=0.427 Sum_probs=56.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcccCCCCC
Q psy14441 274 DSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGYGT 336 (365)
Q Consensus 274 Dp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~IPGfgs 336 (365)
.+-+.+..++.+-+-++.++|.++|+..|+.+|+|.|-.||...||.+.|+|.-. .+=|||+
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~-~lygf~~ 121 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR-TLYGFGG 121 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC-GGGGCCC
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC-cCCCCCC
Confidence 3447899999999999999999999999999999999999999999999998765 7777774
No 24
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.07 E-value=0.0014 Score=57.85 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=61.8
Q ss_pred CCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhh
Q psy14441 260 ILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAK 325 (365)
Q Consensus 260 VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER 325 (365)
-|++..+..++++.=|...+..|+.+.|.+.+.+|+..|+..|..+|+|-|-.||...||...+.+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 378999999999985569999999999999999999999999999999999999999999999854
No 25
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0016 Score=53.00 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=52.7
Q ss_pred HHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhcc
Q psy14441 268 ELMRQVDS--TLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDW 327 (365)
Q Consensus 268 eLVrqIDp--~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~w 327 (365)
.+++++.+ +-.+++++...|.+++.++++++...+-.+|||-|-.||+..||.+.++|+=
T Consensus 20 ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~ 81 (90)
T 3v9r_A 20 ERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQP 81 (90)
T ss_dssp HHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH
T ss_pred HHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCh
Confidence 34555533 3579999999999999999999999999999999999999999999999863
No 26
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0019 Score=60.49 Aligned_cols=72 Identities=14% Similarity=0.401 Sum_probs=63.1
Q ss_pred ChhHHHHHHHhcC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcccCC
Q psy14441 262 GKDKLDELMRQVD--------STLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPG 333 (365)
Q Consensus 262 ~KrkLqeLVrqID--------p~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~IPG 333 (365)
-+.-|.|++. |+ +-..+..++.|-+-++.++|.++|+..|+.+|+|.+-.||.+.||.+.|+|.+ -.+=|
T Consensus 155 ~~~vLrD~i~-i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g-r~lYG 232 (235)
T 2l5a_A 155 YTSVLRDIID-ISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG-RTLYG 232 (235)
T ss_dssp HHHHHHHHHH-HTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH-HHHTT
T ss_pred HHHHHHHhhc-ccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC-Ccccc
Confidence 3566777776 65 55799999999999999999999999999999999999999999999999985 56667
Q ss_pred CC
Q psy14441 334 YG 335 (365)
Q Consensus 334 fg 335 (365)
|+
T Consensus 233 f~ 234 (235)
T 2l5a_A 233 FG 234 (235)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 27
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=96.89 E-value=0.0017 Score=55.75 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 265 KLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 265 kLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
-|-.+++||.|...|..++.++|-.+++|+.+.+...|.+||++.+..||..+|||...+
T Consensus 38 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 38 YIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999999875
No 28
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.87 E-value=0.0027 Score=51.22 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=63.7
Q ss_pred CCCCCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcc
Q psy14441 254 STPNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNIS 330 (365)
Q Consensus 254 s~~~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~ 330 (365)
...+..-|+-.++..+++.-.....+..|+-.++...++.||..+++.|...|++.|..||..+||+..+++.....
T Consensus 13 ~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~ 89 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFD 89 (97)
T ss_dssp -------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGG
T ss_pred CCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHH
Confidence 34566789999999999984333789999999999999999999999999999999999999999999998776554
No 29
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=96.77 E-value=0.0024 Score=55.03 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 265 KLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 265 kLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
-|-.+++||.|...|..++.++|-.+++|+.+.+...|.+||++.+..||..+|||...+
T Consensus 41 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999999875
No 30
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=96.69 E-value=0.0024 Score=54.13 Aligned_cols=52 Identities=15% Similarity=0.305 Sum_probs=49.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhcc
Q psy14441 276 TLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDW 327 (365)
Q Consensus 276 ~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~w 327 (365)
+..+++++...|.+++.+|++++...+-.+|||-|-.||+..||.+.++|+=
T Consensus 45 ~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~ 96 (113)
T 4dra_A 45 EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSN 96 (113)
T ss_dssp TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCH
Confidence 4679999999999999999999999999999999999999999999999863
No 31
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=96.32 E-value=0.0085 Score=50.15 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=65.1
Q ss_pred CCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCc
Q psy14441 257 NDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNI 329 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI 329 (365)
...-|+-.++..+++.-.....+..++-.++...++.||..+++.|...|+.++..||..+||+..+++.-..
T Consensus 38 k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~ 110 (119)
T 4g92_C 38 KIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMF 110 (119)
T ss_dssp SCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGG
T ss_pred ccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchh
Confidence 3455899999999997545579999999999999999999999999999999999999999999999875433
No 32
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.29 E-value=0.012 Score=52.73 Aligned_cols=62 Identities=18% Similarity=0.316 Sum_probs=57.8
Q ss_pred hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhh
Q psy14441 264 DKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAK 325 (365)
Q Consensus 264 rkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER 325 (365)
.-|...++||.|...+..++.+.|-.+.+|+.+.+...|++|+++.+..|+..+|||...+.
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999988874
No 33
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=96.20 E-value=0.015 Score=46.52 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=59.4
Q ss_pred CCCCCCChhHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHh
Q psy14441 256 PNDQILGKDKLDELMRQV--DSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVL 323 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqI--Dp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~L 323 (365)
+++.-+++.-|..|++.. +.+.++.+|+-.++.++.|-||...+.+|+.-|+-++++.||+.|+.=++
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~ 73 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVL 73 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHH
Confidence 356778999999999987 56899999999999999999999999999999999999999999986543
No 34
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=96.15 E-value=0.0059 Score=53.46 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=50.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCc
Q psy14441 275 STLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNI 329 (365)
Q Consensus 275 p~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI 329 (365)
.+..+.+++...|.+++.+|++++...+-.+|||-|-.||+..||.+.+.|+=.+
T Consensus 36 ~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L 90 (140)
T 3vh5_A 36 KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSL 90 (140)
T ss_dssp HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHH
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHH
Confidence 3567999999999999999999999999999999999999999999999987443
No 35
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.11 E-value=0.0099 Score=48.17 Aligned_cols=74 Identities=15% Similarity=0.311 Sum_probs=58.0
Q ss_pred CCCCCCChhHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcc
Q psy14441 256 PNDQILGKDKLDELMRQVDST-LQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNIS 330 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqIDp~-e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~ 330 (365)
..+--++-.++..+++. |+. ..+..++--++....+-|+..+++.|...|+++|..+|..+||+..++++-...
T Consensus 7 k~~~~fPvaRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~ 81 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPA 81 (98)
T ss_dssp ---CCCCHHHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC------
T ss_pred ccCCCCChHHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhh
Confidence 34556888999999997 555 799999999999999999999999999999999999999999999998755544
No 36
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=95.92 E-value=0.031 Score=45.06 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=59.4
Q ss_pred CCCCCCCCChhHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHh
Q psy14441 254 STPNDQILGKDKLDELMRQV--DSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVL 323 (365)
Q Consensus 254 s~~~~~VL~KrkLqeLVrqI--Dp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~L 323 (365)
+.+++..+++.-|..|++.- |.+.++.+|+-.++.++.|-||...+.+|+..|+-.+...||+.|+.=++
T Consensus 6 ~~~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 6 GAGAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp -----CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 34566789999999999975 57899999999999999999999999999999999999999999986443
No 37
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0089 Score=56.08 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCChhHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcc
Q psy14441 259 QILGKDKLDELMRQVDS-------TLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNIS 330 (365)
Q Consensus 259 ~VL~KrkLqeLVrqIDp-------~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~ 330 (365)
-+|+|.-.+.||++|.. ...+..++..+|.+.|+.|+-...+.+...|-|.|--||.+||+||.. |-.|.+
T Consensus 10 ~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLar-rirg~~ 87 (235)
T 2l5a_A 10 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLAR-RIRGQF 87 (235)
T ss_dssp -CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHH-TSSCSC
T ss_pred ccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHH-HHhhcc
Confidence 47899999999999932 468999999999999999999999999999999999999999999985 333443
No 38
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=94.13 E-value=0.12 Score=43.83 Aligned_cols=69 Identities=10% Similarity=0.206 Sum_probs=63.0
Q ss_pred CCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhh
Q psy14441 257 NDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAK 325 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER 325 (365)
.+-.++-.++..++++-...+.+..++-..|..+-|.+..+|++.|...|++.+..++..+||++.+..
T Consensus 20 agL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 344678899999999976778999999999999999999999999999999999999999999998763
No 39
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=94.04 E-value=0.12 Score=43.54 Aligned_cols=69 Identities=10% Similarity=0.192 Sum_probs=62.8
Q ss_pred CCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhh
Q psy14441 257 NDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAK 325 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER 325 (365)
.+-.++-.++..++++-.-.+.+..++-..|..+-|.+..+|++.|...|++.+..+|..+||++.+..
T Consensus 19 agLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 344678889999999977678999999999999999999999999999999999999999999998763
No 40
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=93.85 E-value=0.14 Score=43.77 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=63.1
Q ss_pred CCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhh
Q psy14441 257 NDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAK 325 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER 325 (365)
.+-.++-.++..++++-...+.+..++-..|..+-|.|...|++.|...|++.+..+|..+||++.+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 345688899999999976778999999999999999999999999999999999999999999998763
No 41
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=93.64 E-value=0.14 Score=45.05 Aligned_cols=68 Identities=12% Similarity=0.206 Sum_probs=62.6
Q ss_pred CCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 257 NDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
.+-.++-.++..++++-...+.+..++-..|..+-|.+...|++.|...|++.+..+|..+||++.+.
T Consensus 41 agLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 34467889999999998777899999999999999999999999999999999999999999999876
No 42
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=93.57 E-value=0.13 Score=44.01 Aligned_cols=70 Identities=13% Similarity=0.215 Sum_probs=63.8
Q ss_pred CCCCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 255 TPNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 255 ~~~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
.-.+-.++-.++..++++-...+.+..++-..|..+-|.|...|++.|...|++.+..+|..+||++.+.
T Consensus 20 ~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 20 AKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp GGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 3445578899999999997667799999999999999999999999999999999999999999999876
No 43
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=92.45 E-value=0.16 Score=43.95 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=53.7
Q ss_pred CCCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhCCCCCCchhhHHHhhhccCcc
Q psy14441 256 PNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLA-KHRGSSTLDPKDLQFVLAKDWNIS 330 (365)
Q Consensus 256 ~~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LA-KHRkSdtLEvkDVql~LER~wNI~ 330 (365)
.....|+-.++..+++.-.....+..++--++...++-||..++..|...| +.++..||..+||...+++.-...
T Consensus 15 ~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~d 90 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLE 90 (140)
T ss_dssp --------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTG
T ss_pred ccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhh
Confidence 355678888888888874333789999999999999999999999999999 989999999999999999764444
No 44
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=92.30 E-value=0.28 Score=41.83 Aligned_cols=69 Identities=10% Similarity=0.132 Sum_probs=61.7
Q ss_pred CCCCCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhh
Q psy14441 257 NDQILGKDKLDELMRQVD-STLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAK 325 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqID-p~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER 325 (365)
.+-.++-.++..++++-. ..+.+..++-..|..+-|.|..+|++.|...|++.+..+|..+||++.+..
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 445688899999999865 346999999999999999999999999999999999999999999998753
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=91.91 E-value=0.47 Score=42.42 Aligned_cols=69 Identities=9% Similarity=0.188 Sum_probs=61.4
Q ss_pred CCCCCChhHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhh
Q psy14441 257 NDQILGKDKLDELMRQVDS-TLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAK 325 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqIDp-~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER 325 (365)
.+-.++-.++..++++-.. .+.+..++-..|..+-|.++..|++.|...|+|.|..++..+||++.+..
T Consensus 102 agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 3446788999999998633 47999999999999999999999999999999999999999999998753
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=91.78 E-value=0.78 Score=37.00 Aligned_cols=63 Identities=21% Similarity=0.388 Sum_probs=51.3
Q ss_pred CCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCCchhhHHHh
Q psy14441 260 ILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSS-TLDPKDLQFVL 323 (365)
Q Consensus 260 VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSd-tLEvkDVql~L 323 (365)
-++|+++..|++++. +..+.++|..+|.-+|-.||-++++.|..+.+.++.. .|..+.|.-.+
T Consensus 16 ~f~k~~vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~ 79 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAV 79 (89)
T ss_dssp CCCHHHHHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 478999999999996 5688999999999999999999999999999887632 44444444333
No 47
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=86.32 E-value=0.64 Score=35.27 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcceeeecCCCC
Q psy14441 161 NIQLLVGTVSLAATIGYLAVSDVFIWNFFPP 191 (365)
Q Consensus 161 N~~Ll~Gi~~l~gTi~~~~~SGii~lN~~pP 191 (365)
|++|+.|.+|.++..+|+.+.-=|.+|++|=
T Consensus 15 n~~L~~Ga~FC~a~W~y~~TQ~GIeWnlSPV 45 (56)
T 1v54_K 15 NAVLASGATFCVAVWVYMATQIGIEWNPSPV 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCCCCCCT
T ss_pred ceeeecchhhhHhhHhhhheeeceeeccCcc
Confidence 8999999999999999999987778999985
No 48
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.47 E-value=1.1 Score=36.11 Aligned_cols=67 Identities=25% Similarity=0.261 Sum_probs=31.9
Q ss_pred HHHHHHhhhhhhhhHHhhhccCCCCCCCCCCcCCCCCCCCChHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhcceeeec
Q psy14441 108 SLLKALLPVIGSQMVQQVRRSHAYSKKPPVTIDDLPVPQGSWKAHYDKQNTKYNIQLLVGTVSLAATIGYLAVSDVFIWN 187 (365)
Q Consensus 108 ~~~~~l~p~~~~~~~~q~r~~~~ps~~k~~TmnDLPvP~GdW~e~y~akq~kYN~~Ll~Gi~~l~gTi~~~~~SGii~lN 187 (365)
.|+|.-|-+++-...+|+..-...+. +.-||-.-|. |++|+.|.+|.++..+|+.+.-=|.+|
T Consensus 3 p~ak~AL~~l~~rsiqq~~~Rq~H~k-----------~~pdFHdKYG------n~~L~~Ga~FC~a~W~y~~TQ~GIeWn 65 (80)
T 2y69_K 3 PLAKNALSRLRVQSIQQAVARQIHQK-----------RAPDFHDKYG------NAVLASGATFCVAVWVYMATQIGIEWN 65 (80)
T ss_dssp --------------------------------------CCCHHHHHH------HHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred hHHHHHHHHhhhhhHHHHHHHhcccc-----------CCCchhhhcC------ceeeecchhHHHhhHHHhheecceeec
Confidence 35667777777777788732222221 1124544443 899999999999999999997777799
Q ss_pred CCCC
Q psy14441 188 FFPP 191 (365)
Q Consensus 188 ~~pP 191 (365)
++|=
T Consensus 66 lSPV 69 (80)
T 2y69_K 66 PSPV 69 (80)
T ss_dssp CCCT
T ss_pred CCcc
Confidence 9985
No 49
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=79.73 E-value=2.5 Score=34.56 Aligned_cols=60 Identities=27% Similarity=0.379 Sum_probs=44.4
Q ss_pred CChhHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-------CCCCchhhH
Q psy14441 261 LGKDKLDELMRQV--DSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGS-------STLDPKDLQ 320 (365)
Q Consensus 261 L~KrkLqeLVrqI--Dp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkS-------dtLEvkDVq 320 (365)
|++.-|..|+..- +.+.+|.+|+-+++.+..|-||...+-+|..-.+--+. -.|++.|+.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLE 70 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLE 70 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHH
Confidence 6677777777754 67789999999999999999999999999654433222 257777753
No 50
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.41 E-value=12 Score=33.62 Aligned_cols=67 Identities=12% Similarity=0.296 Sum_probs=54.6
Q ss_pred CChhHHHHHHHhcC--CCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhcc
Q psy14441 261 LGKDKLDELMRQVD--STLQIDEEVYDTFSEIAND----FVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDW 327 (365)
Q Consensus 261 L~KrkLqeLVrqID--p~e~LD~dVEElLLeLADD----FVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~w 327 (365)
++...+.++++..- .+..+++++.+.|.+.++. .+.+++..|+.+|..++.+.|+..||.-.++.-.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 36677777777542 3467999999999999983 7788999999999999999999999998887543
No 51
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=65.49 E-value=4.8 Score=31.84 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=32.0
Q ss_pred hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy14441 264 DKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSS 312 (365)
Q Consensus 264 rkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSd 312 (365)
++|.+..++ -+-..+.+||++.+.--+++=+.++++.-+..|+||...
T Consensus 10 kri~~I~~k-~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R~~~ 57 (75)
T 1h3o_A 10 RRILEIGKK-HGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKNFS 57 (75)
T ss_dssp HHHHHHHHT-TTCCEECTTHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHh-cCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344444443 233678999999999999999999999999999999865
No 52
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.58 E-value=35 Score=30.10 Aligned_cols=66 Identities=6% Similarity=0.119 Sum_probs=51.5
Q ss_pred CChhHHHHHHHhc----CCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhc
Q psy14441 261 LGKDKLDELMRQV----DSTLQIDEEVYDTFSEIAN------DFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKD 326 (365)
Q Consensus 261 L~KrkLqeLVrqI----Dp~e~LD~dVEElLLeLAD------DFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~ 326 (365)
++...+.++++.. -....+++++.+.+.+.++ ..+.+++..++.+|..++...++..|+.-.+++.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 4567777877753 2346899999999999988 2455788999999998888899999998666543
No 53
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=60.83 E-value=16 Score=31.03 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=43.8
Q ss_pred CCChhHHHHHHHhcC----C---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14441 260 ILGKDKLDELMRQVD----S---TLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHR 309 (365)
Q Consensus 260 VL~KrkLqeLVrqID----p---~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHR 309 (365)
+|+|.-.+.||++|. + .....+++-.+|.+-+++|+-+..+.+-..|-|.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA 57 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHL 57 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcC
Confidence 477888899999872 2 4688999999999999999999999999999986
No 54
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=57.43 E-value=16 Score=32.35 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=53.8
Q ss_pred CChhHHHHHHHhcC----CCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhc
Q psy14441 261 LGKDKLDELMRQVD----STLQIDEEVYDTFSEIAN------DFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKD 326 (365)
Q Consensus 261 L~KrkLqeLVrqID----p~e~LD~dVEElLLeLAD------DFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~ 326 (365)
++...+.++++..- ....+++++.+.+.+.++ ..+.+++..++.+|..++..+++..|+.-.+++.
T Consensus 201 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 201 YTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 45778888887641 346889999999999998 4667899999999999899999999998877654
No 55
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=56.05 E-value=43 Score=29.91 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=55.5
Q ss_pred CCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhhhCCCC
Q psy14441 257 NDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDF-----------------------VDNIVHRACQLAKHRGSST 313 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDF-----------------------VdsVvs~AC~LAKHRkSdt 313 (365)
...+++.+.++++-+.+ .+..+++++.+.+.+++... ..+++..+..+|..++.+.
T Consensus 206 ~~~~~~~~~i~~~~~~~-~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~ 284 (331)
T 2r44_A 206 VQKIVSKNDVLEIRNEI-NKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDY 284 (331)
T ss_dssp CCCCSCHHHHHHHHHHH-HTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSB
T ss_pred ccccCCHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCC
Confidence 35667777777776554 46789999999999988543 2345677778899999999
Q ss_pred CCchhhHHHhhhccCccc
Q psy14441 314 LDPKDLQFVLAKDWNISI 331 (365)
Q Consensus 314 LEvkDVql~LER~wNI~I 331 (365)
++..||+-.++.-+.-++
T Consensus 285 v~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 285 VLPEDIKEVAYDILNHRI 302 (331)
T ss_dssp CCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHhHhhc
Confidence 999999988876655443
No 56
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=54.41 E-value=43 Score=29.65 Aligned_cols=55 Identities=11% Similarity=0.078 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcc
Q psy14441 276 TLQIDEEVYDTFSEIAND-------FVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNIS 330 (365)
Q Consensus 276 ~e~LD~dVEElLLeLADD-------FVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~ 330 (365)
...+++++.+.|.+++.. =+.+++..|..+|..++.++++..||.-.++.-..-+
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhc
Confidence 348999999999999874 5678999999999999999999999987776544444
No 57
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=47.45 E-value=56 Score=23.16 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=33.5
Q ss_pred hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14441 264 DKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQ 304 (365)
Q Consensus 264 rkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~ 304 (365)
+.|+.|+=-..-...-.+|..++|=++.-+||.+++..|++
T Consensus 4 ~ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 4 KELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34777777666666777888999999999999999999886
No 58
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=46.19 E-value=43 Score=29.82 Aligned_cols=66 Identities=15% Similarity=0.289 Sum_probs=52.0
Q ss_pred CChhHHHHHHHhcC----CCCCCCHHHHHHHHHHH---------H---HHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 261 LGKDKLDELMRQVD----STLQIDEEVYDTFSEIA---------N---DFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 261 L~KrkLqeLVrqID----p~e~LD~dVEElLLeLA---------D---DFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
++...+.+++++.- ....+++++.+.+.+.+ . -++.+++..++.+|..++...++..|+.-.++
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 45667777776642 23579999999999999 2 34678899999999999999999999988776
Q ss_pred hc
Q psy14441 325 KD 326 (365)
Q Consensus 325 R~ 326 (365)
..
T Consensus 273 ~~ 274 (389)
T 1fnn_A 273 EV 274 (389)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=43.20 E-value=82 Score=28.13 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=49.8
Q ss_pred CChhHHHHHHHhc----CCCCCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhc
Q psy14441 261 LGKDKLDELMRQV----DSTLQIDEEVYDTFSEIAN---D---FVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKD 326 (365)
Q Consensus 261 L~KrkLqeLVrqI----Dp~e~LD~dVEElLLeLAD---D---FVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~ 326 (365)
+++..+.++++.. -....+++++.+.+.+.++ - ..-+++..+..+|. +..+++..||.-.+++.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 4677888888764 2346899999999999987 2 45578888888887 66789999999888764
No 60
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=42.05 E-value=1.2e+02 Score=30.18 Aligned_cols=63 Identities=11% Similarity=0.228 Sum_probs=52.5
Q ss_pred CCCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhhCCCCCCchhhH
Q psy14441 257 NDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIAND-------------FVDNIVHRACQLAKHRGSSTLDPKDLQ 320 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADD-------------FVdsVvs~AC~LAKHRkSdtLEvkDVq 320 (365)
...+++...+.++.+.+. ...+++++.+.+.+++.. -...++..|...|..++.+.++..||.
T Consensus 205 ~~~~~~~e~l~~~~~~~~-~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 205 DALQVTDEEYERWQKEIG-EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp TTTSBCHHHHHHHHHHHT-TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred ccceecHHHHHHHHhcCC-cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 356788899988887775 467999999999999853 344578888899999999999999999
No 61
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=40.97 E-value=83 Score=25.66 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=42.2
Q ss_pred hHHHHHHHhc--CCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 264 DKLDELMRQV--DSTLQIDEEVYDTFSEIAN---DFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 264 rkLqeLVrqI--Dp~e~LD~dVEElLLeLAD---DFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
..+.++++.. ..+..+++++.+.|.+.++ .-+.++++.++..|...+. .|+..||.-.|+
T Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 177 DEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp GGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 4445555443 1245789999998888876 3466778888888866664 589999987664
No 62
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=37.01 E-value=43 Score=28.98 Aligned_cols=69 Identities=10% Similarity=0.095 Sum_probs=47.9
Q ss_pred CCChhHHHHHHHhcCCCCCCCHH-HHHHHHHHHHH----HHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccC
Q psy14441 260 ILGKDKLDELMRQVDSTLQIDEE-VYDTFSEIAND----FVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWN 328 (365)
Q Consensus 260 VL~KrkLqeLVrqIDp~e~LD~d-VEElLLeLADD----FVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wN 328 (365)
..+.+...++++..-....++++ ..+.|.+.++. =+..++..|...|-.++.+.|+.+|+.-.+++...
T Consensus 187 ~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 187 APDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHh
Confidence 34566677777766444444333 23444555444 47788999999999999999999999999987643
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=35.83 E-value=1.7e+02 Score=29.72 Aligned_cols=76 Identities=12% Similarity=0.197 Sum_probs=54.7
Q ss_pred hhHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHHhh----hCCCCCCchhhHHHh
Q psy14441 263 KDKLDELMRQVD------STLQIDEEVYDTFSEIANDF---------VDNIVHRACQLAKH----RGSSTLDPKDLQFVL 323 (365)
Q Consensus 263 KrkLqeLVrqID------p~e~LD~dVEElLLeLADDF---------VdsVvs~AC~LAKH----RkSdtLEvkDVql~L 323 (365)
.+...++++.+- ....+++++.+.+.++++.| +-+++..+|..++. .+...++..||.-.+
T Consensus 351 ~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 351 IEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHH
Confidence 444445554432 35678999999999999886 34677888887776 345678999999999
Q ss_pred hhccCcccCCCCCCC
Q psy14441 324 AKDWNISIPGYGTDE 338 (365)
Q Consensus 324 ER~wNI~IPGfgsDe 338 (365)
++..++.++....++
T Consensus 431 ~~~~~ip~~~~~~~~ 445 (758)
T 1r6b_X 431 ARIARIPEKSVSQSD 445 (758)
T ss_dssp HHHSCCCCCCSSSSH
T ss_pred HHhcCCCccccchhH
Confidence 998887766655444
No 64
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=34.63 E-value=41 Score=28.87 Aligned_cols=64 Identities=8% Similarity=0.110 Sum_probs=42.7
Q ss_pred ChhHHHHHHHhcCCCCCCCHHH-HHHHHHHHHH----HHHHHHHHHHHHHhhhCCCCCCchhhHHHhhh
Q psy14441 262 GKDKLDELMRQVDSTLQIDEEV-YDTFSEIAND----FVDNIVHRACQLAKHRGSSTLDPKDLQFVLAK 325 (365)
Q Consensus 262 ~KrkLqeLVrqIDp~e~LD~dV-EElLLeLADD----FVdsVvs~AC~LAKHRkSdtLEvkDVql~LER 325 (365)
+.+.-.++++..-....+++++ .+.+.+-.+. =+.+++..|+..|..++.+.|+..|+.-.+++
T Consensus 183 ~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 183 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 3444455666554444555554 2333332222 36788999999999999999999999988875
No 65
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=34.17 E-value=76 Score=26.94 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=43.3
Q ss_pred CCCChhHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-CchhhHHHhhhccCcccC
Q psy14441 259 QILGKDKLDE-LMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTL-DPKDLQFVLAKDWNISIP 332 (365)
Q Consensus 259 ~VL~KrkLqe-LVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtL-EvkDVql~LER~wNI~IP 332 (365)
.|-+|+-|++ |++-+.+....+.+|.+-++++...|-+.. ++...+ .+.|+---|+++ |+.+|
T Consensus 92 eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f----------~~~p~l~~i~~~Y~~Lk~~-G~~FP 156 (157)
T 1elk_A 92 LVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF----------RSSPDLTGVVTIYEDLRRK-GLEFP 156 (157)
T ss_dssp HHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH----------TTCTTCHHHHHHHHHHHHH-TCCCC
T ss_pred HHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc----------CCCcchHHHHHHHHHHHHc-CCCCC
Confidence 4778889999 888888776667789988888888887743 222212 255655566665 66665
No 66
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=33.14 E-value=1.1e+02 Score=30.49 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhh
Q psy14441 276 TLQIDEEVYDTFSEIAN-------------DFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAK 325 (365)
Q Consensus 276 ~e~LD~dVEElLLeLAD-------------DFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER 325 (365)
...+++++.+.|.+.+. .-+.+++..|+.+|+.++++.++..||+-.+++
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 35789999888888763 457789999999999999999999999888754
No 67
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=32.99 E-value=1.5e+02 Score=26.56 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=52.6
Q ss_pred CCChhHHHHHHHhc----CCCCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhc
Q psy14441 260 ILGKDKLDELMRQV----DSTLQIDEEVYDTFSEIAN---------DFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKD 326 (365)
Q Consensus 260 VL~KrkLqeLVrqI----Dp~e~LD~dVEElLLeLAD---------DFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~ 326 (365)
-++.+.+.++++.. .....+++++.+.+.+.+. -++..++..++.+|..++...++..|+.-.+++.
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 35667788887542 2335689999999999998 3788899999999999998889999988777654
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=32.25 E-value=96 Score=29.71 Aligned_cols=70 Identities=14% Similarity=0.315 Sum_probs=54.7
Q ss_pred CCCChhHHHHHHHhcCC--CCCCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccC
Q psy14441 259 QILGKDKLDELMRQVDS--TLQIDEEVYDTFSEIA-N---DFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWN 328 (365)
Q Consensus 259 ~VL~KrkLqeLVrqIDp--~e~LD~dVEElLLeLA-D---DFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wN 328 (365)
.-++...+.+.++.... +..+++++.+.+.++| + .-..++++.|..+|..++.+.|+..||.-.++.-.+
T Consensus 364 ~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 364 MLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 34567788888876532 3468999999999998 4 256677888889999999999999999988876444
No 69
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=31.10 E-value=82 Score=27.78 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=49.5
Q ss_pred CCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHH
Q psy14441 260 ILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQF 321 (365)
Q Consensus 260 VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql 321 (365)
+++=.+++.+.+... +.-+|++=-+-+.+++++=+.+...-|-+-||.-+.++++..|+=+
T Consensus 2 vm~~~~~e~lFR~aa-~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPI 62 (148)
T 1wwi_A 2 LMKVAEFERLFRQAA-GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPI 62 (148)
T ss_dssp CSCHHHHHHHHHHHH-CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCC
T ss_pred cCCHHHHHHHHHHHh-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 566788999999854 4455666556678999999999999999999999999999888644
No 70
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=30.48 E-value=25 Score=26.80 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=34.5
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhhCCCCCCchhhHHHhhhc
Q psy14441 285 DTFSEIANDF----VDNIVHRACQLAKHRGSSTLDPKDLQFVLAKD 326 (365)
Q Consensus 285 ElLLeLADDF----VdsVvs~AC~LAKHRkSdtLEvkDVql~LER~ 326 (365)
+.|.+..+.| |.+++..|+..|-.|+...|+.+|+.-.+++-
T Consensus 26 ~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 26 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 3455555556 88999999999999999999999999999874
No 71
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=28.89 E-value=36 Score=34.44 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=47.4
Q ss_pred CCCChhHHHHHHHh----cCCCCCCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhhhCCCCCCc
Q psy14441 259 QILGKDKLDELMRQ----VDSTLQIDEEVYDTFSEIAND------------------FVDNIVHRACQLAKHRGSSTLDP 316 (365)
Q Consensus 259 ~VL~KrkLqeLVrq----IDp~e~LD~dVEElLLeLADD------------------FVdsVvs~AC~LAKHRkSdtLEv 316 (365)
..++...|.+++.. +.| .+++++.+.|.+...+ -+++++..|..+|+.|+++.++.
T Consensus 500 ~~l~~~~l~~~i~~ar~~~~p--~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~ 577 (595)
T 3f9v_A 500 NIIDIDTLRKYIAYARKYVTP--KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTR 577 (595)
T ss_dssp STTCCTTTHHHHHHHHHHHCC--CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSH
T ss_pred cCCCHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCH
Confidence 44555555555532 233 7888888888887543 25788999999999999999999
Q ss_pred hhhHHHhh
Q psy14441 317 KDLQFVLA 324 (365)
Q Consensus 317 kDVql~LE 324 (365)
.||.-.++
T Consensus 578 ~dv~~Ai~ 585 (595)
T 3f9v_A 578 EDAERAIN 585 (595)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987664
No 72
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=28.43 E-value=1.3e+02 Score=25.67 Aligned_cols=70 Identities=10% Similarity=0.233 Sum_probs=49.9
Q ss_pred CCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-CchhhHHHhhhccCcccCCCCCC
Q psy14441 259 QILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTL-DPKDLQFVLAKDWNISIPGYGTD 337 (365)
Q Consensus 259 ~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtL-EvkDVql~LER~wNI~IPGfgsD 337 (365)
.|-+|+-|++|++-+++ ..+++|.+-++++...|-+..- +...+ .++|+---|+++ |+.+|+...+
T Consensus 90 evas~~Fl~el~~l~~~--~~~~~Vk~kil~li~~W~~~f~----------~~~~l~~i~~~Y~~Lk~~-G~~FP~~~~~ 156 (163)
T 1x5b_A 90 EVCSRDFATEVRAVIKN--KAHPKVCEKLKSLMVEWSEEFQ----------KDPQFSLISATIKSMKEE-GITFPPAGSQ 156 (163)
T ss_dssp HHTSHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHTT----------TCSTTHHHHHHHHHHHTT-TCCCCCCSSC
T ss_pred HHhhHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHhc----------CCcccHHHHHHHHHHHHc-CCCCCCCCCC
Confidence 56678999999988864 4688999999999888876421 22222 256777777777 8999988766
Q ss_pred CCCC
Q psy14441 338 ELKP 341 (365)
Q Consensus 338 eirp 341 (365)
...|
T Consensus 157 ~~~~ 160 (163)
T 1x5b_A 157 TSGP 160 (163)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 73
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=27.63 E-value=15 Score=32.24 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=24.5
Q ss_pred HHHHHHHhhhh----hhhhHHhhhccCCCCCCCCCCcCCCCCCCCChHH
Q psy14441 107 SSLLKALLPVI----GSQMVQQVRRSHAYSKKPPVTIDDLPVPQGSWKA 151 (365)
Q Consensus 107 ~~~~~~l~p~~----~~~~~~q~r~~~~ps~~k~~TmnDLPvP~GdW~e 151 (365)
++.+++|.-+= +.++.+-.++-|--|- + .|+-+|..|.|.|+.
T Consensus 34 t~~i~aLreKeKgdWk~LT~eEKkAlYrisF-~-~t~ae~~~p~gewK~ 80 (147)
T 1v54_D 34 SASQKALKEKEKASWSSLSIDEKVELYRLKF-K-ESFAEMNRSTNEWKT 80 (147)
T ss_dssp CHHHHHHHHHTTSCGGGSCHHHHHHHHHHHC-S-SCHHHHTCCCSHHHH
T ss_pred cHHHHHHHHHhcCCHHHcCHHHHHHHHHHHh-c-cccccccCCCCchhH
Confidence 45555555543 4455444443332222 1 477788899999976
No 74
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=27.12 E-value=15 Score=32.88 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhh----hhhhHHhhhccCCCCCCCCCCcCCCCCCCCChHH
Q psy14441 106 LSSLLKALLPVI----GSQMVQQVRRSHAYSKKPPVTIDDLPVPQGSWKA 151 (365)
Q Consensus 106 ~~~~~~~l~p~~----~~~~~~q~r~~~~ps~~k~~TmnDLPvP~GdW~e 151 (365)
|++..++|.-+= +.+..+-.++-|--+-+ .|+-+|..|.|.|+.
T Consensus 55 ~t~~i~aLreKEKgdWk~LT~eEKKAlYriSF~--qt~aE~~~ptgEWK~ 102 (169)
T 2y69_D 55 LSASQKALKEKEKASWSSLSIDEKVELYRLKFK--ESFAEMNRSTNEWKT 102 (169)
T ss_dssp CCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCS--SCHHHHTCCCSHHHH
T ss_pred CcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhc--cccccccCCCCchhH
Confidence 356777777665 55666555544432221 477788899999976
No 75
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=25.41 E-value=73 Score=28.74 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=53.2
Q ss_pred CCCCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHH
Q psy14441 258 DQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQF 321 (365)
Q Consensus 258 ~~VL~KrkLqeLVrqIDp~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql 321 (365)
..+++=.+++.|.+.. .+.-+|.+=-+-+.+++++=+.+.+.-|-+-||.-+.++++..|+=+
T Consensus 24 m~vmg~~kferlFR~a-agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPI 86 (171)
T 1r4v_A 24 LRPKGFDKLDHYFRTE-LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNI 86 (171)
T ss_dssp TSCTTHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCC
T ss_pred HhcCChHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 4589999999999984 34566677667788999999999999999999999999999888744
No 76
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=24.66 E-value=68 Score=27.07 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=34.6
Q ss_pred CChhHHHHHHHhcCCC--CCCCHHH-HHHHHHHHHH----HHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhc
Q psy14441 261 LGKDKLDELMRQVDST--LQIDEEV-YDTFSEIAND----FVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKD 326 (365)
Q Consensus 261 L~KrkLqeLVrqIDp~--e~LD~dV-EElLLeLADD----FVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~ 326 (365)
.+.+...++++..-.. ...++++ .+.|.+..+. -+.+++..|+..|..++...|+..|+.-.+++.
T Consensus 177 p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3445555565543222 2333332 2444444333 467888889999988888999999999888764
No 77
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=24.39 E-value=8.1 Score=28.23 Aligned_cols=17 Identities=18% Similarity=0.616 Sum_probs=13.9
Q ss_pred CcCCCCCCCCChHHHHHh
Q psy14441 138 TIDDLPVPQGSWKAHYDK 155 (365)
Q Consensus 138 TmnDLPvP~GdW~e~y~a 155 (365)
+|.|-+.|.| |.+.+++
T Consensus 2 ~m~~~~LP~G-W~~~~~~ 18 (54)
T 2jv4_A 2 SMVNTGLPAG-WEVRHSN 18 (54)
T ss_dssp CCCCCCCCSS-CCEEECS
T ss_pred CCCCCCCCCC-cEEEEEC
Confidence 6888889988 8887765
No 78
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=24.37 E-value=41 Score=25.38 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=12.7
Q ss_pred hhhCCCCCCchhhHHHhhhccCcccC
Q psy14441 307 KHRGSSTLDPKDLQFVLAKDWNISIP 332 (365)
Q Consensus 307 KHRkSdtLEvkDVql~LER~wNI~IP 332 (365)
.--|-+.|+.-++...||+.||+.||
T Consensus 39 ~dlg~DSl~~vel~~~lE~~fgi~i~ 64 (92)
T 1fh1_A 39 TSLGIDSLGLADVLWDLEQLYGIKIE 64 (92)
T ss_dssp -------CTTTTHHHHHHHC------
T ss_pred hhcCCChHHHHHHHHHHHHHhCCccC
Confidence 34567889999999999999999999
No 79
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.17 E-value=15 Score=32.69 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=31.2
Q ss_pred hhcccccCCCccccccchhhhhhhhhhhccccccchhccchh
Q psy14441 21 ILLKIQSVPTIPQVEQNITYRIQNITQHFNSHSFLFRKQRNV 62 (365)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (365)
||-+---.|.||.--.++|.||.++|.||..|--=+-.+|..
T Consensus 81 iLk~~gl~p~iPEDL~~Lt~RI~~Lt~HLk~hkKD~hSrRgL 122 (158)
T 3j20_Q 81 ILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGL 122 (158)
T ss_dssp HHHHHTCSCSSCHHHHHHHHHHHHHHHHHHHCCCCSHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 333334478999888899999999999999886555555543
No 80
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=24.12 E-value=55 Score=28.01 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=39.3
Q ss_pred hhHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHHHhhhCCCCCCchhhHHHh
Q psy14441 263 KDKLDELMRQVDSTLQIDEEV-YDTFSEIANDF----VDNIVHRACQLAKHRGSSTLDPKDLQFVL 323 (365)
Q Consensus 263 KrkLqeLVrqIDp~e~LD~dV-EElLLeLADDF----VdsVvs~AC~LAKHRkSdtLEvkDVql~L 323 (365)
.....++++....+..+++++ .+.|.+..+.| +.+++..|+..|..++..+|+..|+.-.+
T Consensus 188 ~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 188 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 344445555544444555554 34444444433 56889999999988888889999987544
No 81
>2zyc_A Peptidoglycan hydrolase FLGJ; 1.74A {Sphingomonas SP} PDB: 3k3t_A
Probab=23.42 E-value=42 Score=29.25 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcccC
Q psy14441 290 IANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIP 332 (365)
Q Consensus 290 LADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~IP 332 (365)
+.++||+.+...|.+.||.-+-.. .+-=.|-.||-.||-+..
T Consensus 1 ~~~~FI~~~~~~A~~~~~~~gI~~-sv~lAQA~LESgwG~S~l 42 (170)
T 2zyc_A 1 MAQAFVDATWPQAAKAAQSLGVPA-HFLVAQAALETGWGKSQI 42 (170)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTSCH-HHHHHHHHHHHTTTTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHcCCCCCcc
Confidence 357999999999999999998763 555567889999988753
No 82
>3fi7_A LMO1076 protein; listeria monocytogenes, autolysin, N acetylglucosaminidase, peptidoglycan hydrolase, autoinhibition, GH73, hydrolase; 2.35A {Undefined}
Probab=22.44 E-value=74 Score=28.33 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcccC
Q psy14441 277 LQIDEEVYDTFSEI------ANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIP 332 (365)
Q Consensus 277 e~LD~dVEElLLeL------ADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~IP 332 (365)
..|++-+.+.+..+ .++||+.+...|.+.++.-|-. -.+-=.|-.||-.||-+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~FI~~i~~~A~~~~~~~gi~-~s~~laQa~lESgwG~s~l 70 (183)
T 3fi7_A 10 FSLEQNRDDAMAALASTPTFQQTFINSISTQAMDLCKKYNLY-PSVMIAQAALESNWGRSEL 70 (183)
T ss_dssp CCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHTTTTSTT
T ss_pred hHHHHhhhhhcccccCCCccHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHccCCCCcc
Confidence 34444444444444 6789999999999999998876 3566678899999988653
No 83
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=21.34 E-value=73 Score=23.42 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCCchhhHHHhhhccCcccCCCCCCCCCCC
Q psy14441 295 VDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGYGTDELKPY 342 (365)
Q Consensus 295 VdsVvs~AC~LAKHRkSdtLEvkDVql~LER~wNI~IPGfgsDeirp~ 342 (365)
|..++..|+..|-.|+...|+..|+.-.+++- .|+.+ ++++-|
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~----~ps~~-~~l~~y 82 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTV----IKKDE-QEHEFY 82 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH----CC----------
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH----ccCch-HHHHhc
Confidence 56788888888888888899999998888763 46665 554433
No 84
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=20.83 E-value=53 Score=28.79 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=39.6
Q ss_pred ChhHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHHHhhhCCCCCCchhhHHHh
Q psy14441 262 GKDKLDELMRQVDSTLQIDEEV-YDTFSEIANDF----VDNIVHRACQLAKHRGSSTLDPKDLQFVL 323 (365)
Q Consensus 262 ~KrkLqeLVrqIDp~e~LD~dV-EElLLeLADDF----VdsVvs~AC~LAKHRkSdtLEvkDVql~L 323 (365)
+.+...++++.......+++++ .+.|.+..+.| +.+++..|+..|..++...|+..|+.-.+
T Consensus 211 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 3444455665544445555554 33444433332 56889999999998888889999987554
No 85
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=20.81 E-value=1.7e+02 Score=30.19 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=50.8
Q ss_pred CCCCCChhHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhhCCC
Q psy14441 257 NDQILGKDKLDELMRQVD---STLQIDEEVYDTFSEIANDFV---------------------DNIVHRACQLAKHRGSS 312 (365)
Q Consensus 257 ~~~VL~KrkLqeLVrqID---p~e~LD~dVEElLLeLADDFV---------------------dsVvs~AC~LAKHRkSd 312 (365)
...+++...|.+++..+- ..-.+++++++.|.++..+-= +.++..|-..||-|+++
T Consensus 390 ~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~ 469 (506)
T 3f8t_A 390 DTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD 469 (506)
T ss_dssp ----CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcC
Confidence 346788888888777654 256899999999998865432 24667788899999999
Q ss_pred CCCchhhHHHhh
Q psy14441 313 TLDPKDLQFVLA 324 (365)
Q Consensus 313 tLEvkDVql~LE 324 (365)
.++..||+-.++
T Consensus 470 ~V~~eDV~~Ai~ 481 (506)
T 3f8t_A 470 DVEPEDVDIAAE 481 (506)
T ss_dssp EECHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999987764
No 86
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=20.76 E-value=1.4e+02 Score=23.53 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=40.8
Q ss_pred CChhHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHhh
Q psy14441 261 LGKDKLDELMRQVDS--TLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324 (365)
Q Consensus 261 L~KrkLqeLVrqIDp--~e~LD~dVEElLLeLADDFVdsVvs~AC~LAKHRkSdtLEvkDVql~LE 324 (365)
++...+.+++++.-. +..+++++.+.|.+.++--+..+.....+++... ++++.+||.-.+.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 456677777766532 3458898888888887755555555555544332 6899999876654
No 87
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=20.24 E-value=78 Score=23.07 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhhCCCCCCchhhHHHhhhcc
Q psy14441 285 DTFSEIANDF----VDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDW 327 (365)
Q Consensus 285 ElLLeLADDF----VdsVvs~AC~LAKHRkSdtLEvkDVql~LER~w 327 (365)
+.|.+.++.| |.+++..|+..|-.|+...|+.+|+.-.|++-.
T Consensus 28 ~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 28 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3455555656 788999999999999999999999999888743
Done!