RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14441
(365 letters)
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits;
transcription/TBP-associated factors, TBP-associated
factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Length = 76
Score = 108 bits (272), Expect = 7e-30
Identities = 35/75 (46%), Positives = 54/75 (72%)
Query: 257 NDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDP 316
+ +L K KL +L+R+VD Q+DE+V + +IA+DF++++V ACQLA+HR SSTL+
Sbjct: 2 SHMVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEV 61
Query: 317 KDLQFVLAKDWNISI 331
KD+Q L + WN+ I
Sbjct: 62 KDVQLHLERQWNMWI 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.1 bits (168), Expect = 6e-13
Identities = 83/413 (20%), Positives = 143/413 (34%), Gaps = 100/413 (24%)
Query: 8 SLASCARKYLPCDILLKIQSVPTIPQVEQNITYRI---QNITQHFNSHSFLFRK--QRNV 62
+L +C P +L +Q + Q++ N T R NI +S R+ +
Sbjct: 188 NLKNCNS---PETVLEMLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 63 YLHCLLVMLN------FMSFNL-CQ-----------HSLKAHSHGHASIHDMHMPVACHF 104
Y +CLLV+LN + +FNL C+ L A + H S+ M +
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 105 VLSSLLKAL------LPVIGSQMVQQVRRSH--------AYSKKPPVTIDDLPVPQGSWK 150
V S LLK L LP ++V ++ + T D +WK
Sbjct: 303 VKSLLLKYLDCRPQDLP-------REVLTTNPRRLSIIAESIRDGLATWD-------NWK 348
Query: 151 AHYDKQNTKYNIQLLVGTVSLAATIGYLAVSDVFIWNFFPPTLPKNEVLSFPAKDLSML- 209
H + I+ + + A + + FPP+ P LS++
Sbjct: 349 -HVNCDKLTTIIESSLNVLEPAEYRKMF--DRLSV---FPPSAH------IPTILLSLIW 396
Query: 210 -NSVDSDHSQVMNSFSNSMEVDQNSSQSSTQSPAAQVMQKTNMPSSTPNDQILGKDKLD- 267
+ + SD V+N V++ +S+ P+ + K + N+ L + +D
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL----ENEYALHRSIVDH 452
Query: 268 -ELMRQVDSTLQIDEEVYDTFSEIAND--FVDNIVHRACQLAKHRGSSTLDPK---DLQF 321
+ + DS D D F +I H +H TL D +F
Sbjct: 453 YNIPKTFDS---------DDLIPPYLDQYFYSHIGHHLKN-IEHPERMTLFRMVFLDFRF 502
Query: 322 VLAK----DWNISIPGYGTD---ELKPYKRPMA--TEAHKQRLALIRKHLKKY 365
+ K + G + +LK YK + +++ + I L K
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Score = 31.7 bits (71), Expect = 0.50
Identities = 14/117 (11%), Positives = 39/117 (33%), Gaps = 25/117 (21%)
Query: 259 QILGKDKLDELMRQVDSTLQIDEEVYDTF----SEIANDFVDNIVHR-----ACQLAKHR 309
IL K+++D ++ D+ ++ T E+ FV+ ++ + +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTL-RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 310 GSSTLDPKDLQFVLAKDWNISIPGYGTDELKPY--KRPMATEAHKQRLALIRKHLKK 364
++ + + +N Y R + + + +R+ L +
Sbjct: 103 RQPSMMTRMYIEQRDRLYN------DNQVFAKYNVSRL---QPYLK----LRQALLE 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 1e-06
Identities = 65/374 (17%), Positives = 120/374 (32%), Gaps = 121/374 (32%)
Query: 2 SSRALTSLASC---ARKYLP--CDILLKIQSVPTIPQVEQNITYRIQNITQHFNSHSFLF 56
S+ L+ L A K +IL +++ P + ++ I S
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI----------SCP- 239
Query: 57 RKQRNVYLHCLLVMLNFMSFNLCQHS------LKAHSHGHASIHDMHMPVAC-------- 102
L ++ + +++ + L+++ G A+ H + A
Sbjct: 240 -------LIGVIQLAHYVVT--AKLLGFTPGELRSYLKG-ATGHSQGLVTAVAIAETDSW 289
Query: 103 -HFVLSSLLKAL--LPVIGSQMVQQVRRSH-AYSKK--PPVTIDD-------LPVP---- 145
F S+ KA+ L IG R + AY PP ++D +P P
Sbjct: 290 ESF-FVSVRKAITVLFFIGV-------RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 146 QGSWKAHYDKQNTKYNIQLLVG-TVSLAATIGYLAVSDVFIWNFFPPTLPKNEVLSFPAK 204
+ K N L G V ++ G KN V+S P +
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-----------------AKNLVVSGPPQ 384
Query: 205 DLSMLNSVDSDHSQVMNSFSNSMEVDQNSSQSSTQSPAAQ---VMQKTNMPSSTP-NDQI 260
L LN + +DQ ++ P ++ +P ++P + +
Sbjct: 385 SLYGLNL-------TLRKAKAPSGLDQ------SRIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 261 LG--KDKLDELMRQVD-----STLQIDEEVYDTF---------SEIANDFVDNIVHRAC- 303
L D +++ + + + +QI VYDTF I+ VD I+
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQI--PVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 304 --QLAKHRGSSTLD 315
+ + + LD
Sbjct: 490 WETTTQFKATHILD 503
Score = 47.0 bits (111), Expect = 7e-06
Identities = 38/271 (14%), Positives = 83/271 (30%), Gaps = 80/271 (29%)
Query: 81 HSLKAHSHGHASI-HDMHMPVACHFVLSSLLKALLPVIGSQMVQQVRRSHAYSKKPPVTI 139
+S + + H S+ H + +P A F+ S Q++
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIAS----------------QLQEQFN--------- 38
Query: 140 DDLPVPQGSWKAHYDKQNTKYNIQLLVGTVSLAAT-IGYLA-------------VSDVFI 185
LP P + A D+ T L +GY++ V ++ +
Sbjct: 39 KILPEPTEGF-AADDEPTTP---------AELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 186 WNFFPPTLPKNEVLSFPAKDLSMLNSVDSDHSQVMNSFSNSMEVDQNSSQSSTQSP---A 242
F L N++ + AK L ++ +++ ++ + + + + S A
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 243 AQVMQKTNMPSSTPNDQILG-----KDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDN 297
+ I G D +EL ++Y T+ + D +
Sbjct: 149 VGEGNAQLVA-------IFGGQGNTDDYFEEL-----------RDLYQTYHVLVGDLIKF 190
Query: 298 IVHRACQLAKHRGSST-LDPKDLQFVLAKDW 327
+L + + + + L + +W
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNIL---EW 218
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens}
SCOP: a.22.1.3
Length = 97
Score = 38.0 bits (88), Expect = 5e-04
Identities = 15/85 (17%), Positives = 32/85 (37%)
Query: 242 AAQVMQKTNMPSSTPNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHR 301
+ + + N+ Q L ++ ++M+ + I E F++ A F+ + R
Sbjct: 1 GSHMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLR 60
Query: 302 ACQLAKHRGSSTLDPKDLQFVLAKD 326
A + TL D+ + K
Sbjct: 61 AWIHTEDNKRRTLQRNDIAMAITKF 85
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B
3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B
3azf_B 3afa_B 3azh_B 3azk_B ...
Length = 103
Score = 36.5 bits (84), Expect = 0.002
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 279 IDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGYG 335
I +Y+ + F++N++ A +H T+ D+ + L + YG
Sbjct: 47 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR---TLYG 100
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding
prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B
1aoi_B 3kwq_B* 1hio_D 2yfv_B
Length = 84
Score = 35.6 bits (82), Expect = 0.003
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 279 IDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGYG 335
I +Y+ + F++N++ A +H T+ D+ + L + YG
Sbjct: 28 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR---TLYG 81
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA,
nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB:
3vh5_D 3vh6_D
Length = 81
Score = 33.7 bits (77), Expect = 0.011
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 274 DSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLA 324
D +++ + +E+ FV RA + A+ +D + ++ VL
Sbjct: 24 DGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLP 74
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair,
histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB:
4drb_J
Length = 84
Score = 32.5 bits (74), Expect = 0.032
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 263 KDKLDELMRQV--DSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQ 320
K+ + L+ D ++ + E+ FV R + A+ + +D L+
Sbjct: 15 KELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLE 74
Query: 321 FVLA 324
VL
Sbjct: 75 KVLP 78
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A
{Pyrococcus horikoshii} SCOP: a.22.1.2
Length = 70
Score = 32.0 bits (73), Expect = 0.034
Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 261 LGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQ 320
L +D L+R+ + ++ E+ +E ++ I +A + A+H G T+ +D++
Sbjct: 7 LPIAPVDRLIRKAGAE-RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIK 65
Query: 321 FVL 323
+
Sbjct: 66 LAI 68
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus
fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A
1bfm_A
Length = 68
Score = 31.1 bits (71), Expect = 0.061
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 279 IDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAK 325
+ ++ +++ + + I A +LAKH G T+ +D++
Sbjct: 20 VSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A
single chain of CSE4+SCM3+H4, fusion protein; NMR
{Saccharomyces cerevisiae}
Length = 235
Score = 31.5 bits (70), Expect = 0.32
Identities = 15/113 (13%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 230 DQNSSQSSTQSPAAQVMQKTNMPSSTPNDQILGKDKLDELMRQVDSTLQ-------IDEE 282
D ++ ++ +ST + + L +++ D I
Sbjct: 123 DLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYTSVLRDIIDISDEEDGDKGGVKRISGL 182
Query: 283 VYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGYG 335
+Y+ + F+++++ + +H T+ D+ + L K ++ G+G
Sbjct: 183 IYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYAL-KRQGRTLYGFG 234
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 31.2 bits (70), Expect = 0.57
Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 266 LDELMRQVD-----STLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQ 320
+++MR + S +D + S+I N + + +++ +D ++
Sbjct: 146 WNDIMRSTNEGKDISIYLLDNNKREKESDI-NKEFATLFNDFMNMSESHAEGVVDEDEIS 204
Query: 321 FVLAKD 326
+L
Sbjct: 205 KLLTMK 210
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding
prote; 1.70A {Xenopus laevis}
Length = 77
Score = 27.5 bits (61), Expect = 1.5
Identities = 10/55 (18%), Positives = 20/55 (36%)
Query: 268 ELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFV 322
E+ + + L+ E + ++ + A H T+ PKD+Q
Sbjct: 15 EIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLA 69
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore,
centromere, histone chaperone, BUDD; 2.32A
{Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Length = 100
Score = 28.2 bits (62), Expect = 1.5
Identities = 10/77 (12%), Positives = 24/77 (31%)
Query: 247 QKTNMPSSTPNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLA 306
Q++ + ++ + L+ E + ++ ++ LA
Sbjct: 21 QRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLA 80
Query: 307 KHRGSSTLDPKDLQFVL 323
H T+ KD+Q
Sbjct: 81 LHAKRITIMRKDMQLAR 97
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.9
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 10/35 (28%)
Query: 4 RALTSLASCARKYLPCDILLKIQSVPTI---PQVE 35
+AL L + + Y D S P + +E
Sbjct: 20 QALKKLQASLKLYAD-D------SAPALAIKATME 47
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein;
2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB:
2bym_A
Length = 140
Score = 28.5 bits (63), Expect = 1.9
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 234 SQSSTQSPAAQVMQKTNMPSSTPNDQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIAND 293
S +T +P S ++ +M+ T I EV ++
Sbjct: 3 EPRSQPPVERPPTAETFLPLS----------RVRTIMKSSMDTGLITNEVLFLMTKCTEL 52
Query: 294 FVDNIVHRACQLAKHRGSS-TLDPKDLQFVLAKD 326
FV ++ A + L + L V+ K+
Sbjct: 53 FVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86
>3ce2_A Putative peptidase; structural genomics, unknown function, P
protein structure initiative; 2.60A {Chlamydophila
abortus}
Length = 618
Score = 29.3 bits (66), Expect = 2.2
Identities = 21/158 (13%), Positives = 46/158 (29%), Gaps = 22/158 (13%)
Query: 195 KNEVLSFPAKDLSMLNSVDSDHSQVMNSFSNSMEVDQNSSQSSTQSP-------AAQVMQ 247
L +K S L+ + Q +S NS + + QS +
Sbjct: 174 AFTPLEVASKAFSSLSDSEIPFGQATDSEGNSHPLSHALASLYMQSTDRELRKTSYLAQC 233
Query: 248 KT-----NMPSSTPNDQILGKDKLDELMRQVDSTLQ-------IDEEVYDTFSEIANDFV 295
+ + ++ N +I + ++ +S LQ I VY +I
Sbjct: 234 ERYHSYRHTFANLLNGKIQAHVFYAKN-KRYNSCLQAALYHNNIPTTVYTNLIDIVKKNS 292
Query: 296 DNIVHRACQL-AKHRGSSTLDPKDLQFVLAKDWNISIP 332
++ + + + D+ L++
Sbjct: 293 S-LITKYFSIKQRCLNLKDFHFYDVYAPLSQSKEKKYT 329
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 29.3 bits (66), Expect = 2.3
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Query: 278 QIDEEVYDTFSEIANDFVDNIVHRACQL-AKHRGSSTLDPKDLQFVLAKDWNISIPGYGT 336
+ E+ F + + I + + + G L D FV +P
Sbjct: 227 DYNAEMVAKFRKQVEKHIVPIAVKLRERQRERIGVEKLKYYDEAFVFPTG--NPMPKGDA 284
Query: 337 DELK 340
+ +
Sbjct: 285 NWII 288
>1j5u_A Archease, possible chaperone; structural genomics, joint center for
structural G JCSG, protein structure initiative, PSI;
2.00A {Thermotoga maritima} SCOP: d.208.1.1
Length = 136
Score = 27.4 bits (60), Expect = 4.2
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 261 LGKDKL----DELMRQVDSTLQIDEEVY-----DTFSEIANDFVDNIVHRACQLAKHRGS 311
+G DK+ + + ++ T I E+ + E N ++ K +
Sbjct: 1 MGSDKIHHHHHHMRKPIEHTADIAYEISGNSYEELLEEARNILLEEEGIVLDTEEKEKMY 60
Query: 312 STLDPKDLQFVLAKDWNISI-PGYGTDELK 340
+ +D F DW + I G+ +K
Sbjct: 61 PLEETEDAFFDTVNDWILEISKGWAPWRIK 90
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor
suppressor, MIX lineage leukemia, unknown function;
1.95A {Nematostella vectensis}
Length = 472
Score = 28.2 bits (62), Expect = 4.7
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 280 DEEVYDTFSEIANDFVDNIVHRACQLAKHRGSST----LDPKDLQFVLA 324
DEE+Y F EIAND + NI+ A A G+ + DPK VL
Sbjct: 335 DEEMYKEFHEIANDLIPNILKDAVAKADPSGTGSTNLTSDPKFFALVLQ 383
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription,
epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A
3u86_A 3u88_A*
Length = 550
Score = 28.3 bits (62), Expect = 4.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 280 DEEVYDTFSEIANDFVDNIVHRACQLAKHRGSST 313
DEE+Y F E+AND + N++ A L +
Sbjct: 357 DEEIYKEFFEVANDVIPNLLKEAASLLEAGEERP 390
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone
fold, complex (TWO transcr factors); 2.00A {Drosophila
melanogaster} SCOP: a.22.1.3
Length = 68
Score = 26.0 bits (57), Expect = 5.0
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 280 DEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQ 320
+ V + E +V +I+ A A H T+D D++
Sbjct: 20 EPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVR 60
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 27.5 bits (61), Expect = 5.1
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 275 STLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHR 309
L ++ + Y +I +++ N + +L +
Sbjct: 72 KVLVVEGQRYHDLDQIIVEYLQNKIRLLNELTSNE 106
>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea}
Length = 90
Score = 25.7 bits (57), Expect = 9.0
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 39 TYRIQNITQHFNSH 52
T +I+ +T H H
Sbjct: 30 TNKIRRLTLHLELH 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.386
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,257,285
Number of extensions: 296024
Number of successful extensions: 745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 738
Number of HSP's successfully gapped: 33
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)