RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14441
(365 letters)
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone
fold domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 107 bits (269), Expect = 8e-30
Identities = 35/74 (47%), Positives = 53/74 (71%)
Query: 258 DQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPK 317
+L K KL +L+R+VD Q+DE+V + +IA+DF++++V ACQLA+HR SSTL+ K
Sbjct: 1 HMVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 60
Query: 318 DLQFVLAKDWNISI 331
D+Q L + WN+ I
Sbjct: 61 DVQLHLERQWNMWI 74
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 42.1 bits (99), Expect = 2e-05
Identities = 11/64 (17%), Positives = 26/64 (40%)
Query: 261 LGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQ 320
L K ++ + RQ ++ ++ DT + + + + A + G TL + L+
Sbjct: 2 LPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLK 61
Query: 321 FVLA 324
+
Sbjct: 62 ALAD 65
Score = 41.7 bits (98), Expect = 2e-05
Identities = 10/78 (12%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 258 DQILGKDKLDELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPK 317
++ G+ + ++++ + + D ++++ + + +A + A G T+ +
Sbjct: 77 GELFGRATVRRILKRAGIE-RASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGE 135
Query: 318 DLQFVLAKDWNISIPGYG 335
D++ + S+P G
Sbjct: 136 DVEKAITY----SMPKGG 149
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 38.6 bits (90), Expect = 7e-05
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 278 QIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVLAKDWNISIPGYG 335
+I +Y+ + F++N++ A +H T+ D+ + L + ++ G+G
Sbjct: 26 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ-GRTLYGFG 82
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 36.7 bits (85), Expect = 2e-04
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 269 LMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVL 323
L+R+ ++ E+ +E ++ I +A + A+H G T+ +D++ +
Sbjct: 11 LIRK-AGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAI 64
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 92
Score = 31.3 bits (71), Expect = 0.044
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 269 LMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQ 320
+++QV I + + ND + I A +LA + ST+ +++Q
Sbjct: 12 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQ 63
>d2cxfa1 a.256.1.1 (A:83-249) Rap2 interacting protein X (RUFY3)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 167
Score = 29.5 bits (66), Expect = 0.46
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 43 QNITQHFNSHSFLFRKQRNVYLHCLLVMLNFMSFNLC 79
+ + F + L ++ + LLV LN + N C
Sbjct: 123 KELLSEFYEVNALMMEEEGAIIAGLLVGLNVIDANFC 159
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 95
Score = 28.2 bits (63), Expect = 0.49
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 268 ELMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQFVL 323
E+ + + L+ E + ++ + A H T+ PKD+Q
Sbjct: 33 EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 88
>d1t56a2 a.121.1.1 (A:95-214) Ethr repressor {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 120
Score = 28.7 bits (64), Expect = 0.50
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 269 LMRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRACQL-AKHRGSSTLDPKDL 319
+ R + EV + +S ++ + TL +L
Sbjct: 26 VTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHEL 77
>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 120
Score = 28.3 bits (63), Expect = 0.69
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 193 LPKNEVLSFPAKDLSMLNSVDSDHSQVMNSFSNSMEVDQNSSQSSTQ 239
L + ++ SF ++L + S+ S S+ + + S +V+ S +S
Sbjct: 29 LQEKKMQSFYQQELETVESLQSLASRPVTHSTGSDQVELKDSGTSGV 75
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId:
10090]}
Length = 85
Score = 27.5 bits (61), Expect = 0.81
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 270 MRQVDSTLQIDEEVYDTFSEIANDFVDNIVHRA 302
+ ++ + E+Y +F EI + + +H
Sbjct: 14 VNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTK 46
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 27.1 bits (60), Expect = 1.3
Identities = 13/75 (17%), Positives = 24/75 (32%)
Query: 41 RIQNITQHFNSHSFLFRKQRNVYLHCLLVMLNFMSFNLCQHSLKAHSHGHASIHDMHMPV 100
RI + + VY +L L L ++ K + + + +
Sbjct: 16 RIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 75
Query: 101 ACHFVLSSLLKALLP 115
L SL+KA +
Sbjct: 76 RGDEELDSLIKATIA 90
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 55
Score = 25.1 bits (55), Expect = 3.1
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 229 VDQNSSQSSTQSPAAQVMQKTNMPSSTPNDQILGKDKLDELMR 271
+D+ SQ + +V+++ + S PND ++EL++
Sbjct: 13 IDEFESQGFEKDKIVEVLRRLGVKSLDPNDNNTANRIIEELLK 55
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 85
Score = 24.7 bits (54), Expect = 6.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 38 ITYRIQNITQHFNSHSFLFRKQRNV 62
+T +I N+ +H H +R +
Sbjct: 30 LTEQINNLNEHLRVHKKDHHSRRGL 54
>d2izpa1 a.250.1.1 (A:1035-1301) Putative membrane antigen BipD
{Burkholderia pseudomallei [TaxId: 28450]}
Length = 267
Score = 26.0 bits (57), Expect = 6.8
Identities = 9/69 (13%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 190 PPTLPKNE--VLSF-PAKDLSMLNSVDSDHSQVMNSFSNSMEVDQNSSQSSTQSPAAQVM 246
+ ++ V++ P K + M +S+ D + + + + + + Q+ ++
Sbjct: 183 GDAVSISDSGVVTINPDKLIKMRDSLPPDGTVWDTARYQAWNTAFSGQKDNIQNDVQTLV 242
Query: 247 QKTNMPSST 255
+K + +S
Sbjct: 243 EKYSHQNSN 251
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 68
Score = 24.3 bits (53), Expect = 8.4
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 280 DEEVYDTFSEIANDFVDNIVHRACQLAKHRGSSTLDPKDLQ 320
+ V + E +V +I+ A A H T+D D++
Sbjct: 20 EPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVR 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.386
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,277,189
Number of extensions: 55927
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 25
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)