BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14443
         (235 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
           Mycobacterium Abscessus
          Length = 415

 Score = 32.0 bits (71), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 18  KGLTFEQLQKLKEEMGTKLFNKKVFNSKSPSS 49
            GL+  +   L E+MG  LF   VFN  +P S
Sbjct: 84  GGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDS 115


>pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
           Dicer
          Length = 265

 Score = 27.3 bits (59), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 192 SEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKERSQHNY 233
           +EKT+ +L+  FET +K  KIN   + K   L+A   + ++Y
Sbjct: 4   AEKTLNHLISGFETFEK--KINYRFKNKAYLLQAFTHASYHY 43


>pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
           Dicer
          Length = 265

 Score = 27.3 bits (59), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 192 SEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKERSQHNY 233
           +EKT+ +L+  FET +K  KIN   + K   L+A   + ++Y
Sbjct: 4   AEKTLNHLISGFETFEK--KINYRFKNKAYLLQAFTHASYHY 43


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.128    0.345 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,995,092
Number of Sequences: 62578
Number of extensions: 147036
Number of successful extensions: 393
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 5
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)