Query psy14443
Match_columns 235
No_of_seqs 148 out of 229
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:59:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06102 DUF947: Domain of unk 100.0 2.9E-56 6.4E-61 377.1 18.5 166 60-229 1-168 (168)
2 KOG3190|consensus 100.0 4.2E-52 9E-57 363.5 17.5 201 19-234 48-252 (256)
3 COG0228 RpsP Ribosomal protein 41.6 14 0.00031 28.5 1.2 33 72-110 11-43 (87)
4 PRK10203 hypothetical protein; 40.5 2E+02 0.0044 23.4 9.2 48 111-158 49-99 (122)
5 PF15290 Syntaphilin: Golgi-lo 37.0 2.2E+02 0.0048 26.7 8.3 73 95-168 38-117 (305)
6 KOG3850|consensus 28.1 1.8E+02 0.004 28.5 6.5 50 110-159 289-343 (455)
7 PF15290 Syntaphilin: Golgi-lo 27.5 1.8E+02 0.004 27.2 6.2 42 116-162 82-123 (305)
8 PHA02047 phage lambda Rz1-like 25.2 3.5E+02 0.0076 21.5 6.6 41 113-155 18-63 (101)
9 CHL00005 rps16 ribosomal prote 21.0 44 0.00095 25.5 0.7 28 77-109 15-42 (82)
10 PF14335 DUF4391: Domain of un 19.6 1.9E+02 0.0042 25.2 4.6 29 143-171 185-213 (221)
No 1
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=100.00 E-value=2.9e-56 Score=377.11 Aligned_cols=166 Identities=51% Similarity=0.778 Sum_probs=163.3
Q ss_pred ccccCCCCccccCCCCccccccCCCCcccC--CCCCCCCCCccccCCCcchhhhhhhcCCchHHHHHHHHHHHHHHhhcC
Q psy14443 60 KRENKNRPREISSKIPQKKFAQQSAPVIPV--QKNIPRDPRFDSLCGTFKEKAFHSAYKFIDDIREKEISILKKKLKKEK 137 (235)
Q Consensus 60 kR~nK~aP~E~SSKk~V~r~R~~~~~v~~~--~k~~~RDPRFd~~~G~~~~~~f~k~Y~FL~e~r~~E~~~Lk~~lkk~k 137 (235)
||.|||||+||||++|||++| +||++ +++.+||||||++||+||.++|+++|+||+|||..|+.+|+++|++++
T Consensus 1 KR~~K~aP~E~SSKk~v~r~r----~v~~~~~~k~~~rDPRFd~~~G~~~~~~f~k~Y~FL~d~r~~E~~~Lk~~lk~~k 76 (168)
T PF06102_consen 1 KRSNKNAPREMSSKKPVSRFR----QVVQVEKKKKKRRDPRFDSLSGEFNEDLFRKNYGFLDDYREKEIKELKKQLKKTK 76 (168)
T ss_pred CCCCCCCCccccCCCCCCCcc----cccCccccCCCCCCCCcCccccccCHHHHHHhhhhHHHHHHHHHHHHHHHHHHcC
Confidence 589999999999999999999 99988 889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy14443 138 NPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHTARIQALKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIE 217 (235)
Q Consensus 138 ~~~~~e~lk~~l~r~~~q~~~~~~~~~~~e~~~e~kk~e~e~vk~GKkPfflKkse~Kk~~l~~kf~~Lk~~Gkl~K~le 217 (235)
|+++++.|+.+|++|++++.+.+.++.+++++.+|+++|+++|.+|++|||||+||+++++|.++|++|+++|+|++||+
T Consensus 77 ~~~~~e~lk~~L~~~~~q~~~~~~~~~~~e~~~~~kk~E~e~v~~GKkP~flKkse~Kk~~l~~kf~~lk~~~kl~K~le 156 (168)
T PF06102_consen 77 DPEEREELKRELQRMESQLKARKRKDREREVKKEHKKEEREKVKQGKKPFFLKKSEKKKLELKEKFKELKKSGKLDKYLE 156 (168)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhc
Q psy14443 218 KKTKALKAKERS 229 (235)
Q Consensus 218 kkRKK~~~Ke~k 229 (235)
++|||+++||++
T Consensus 157 kkrKK~~~Ke~k 168 (168)
T PF06102_consen 157 KKRKKNASKERK 168 (168)
T ss_pred HHHhhhcccccC
Confidence 999999999986
No 2
>KOG3190|consensus
Probab=100.00 E-value=4.2e-52 Score=363.53 Aligned_cols=201 Identities=35% Similarity=0.567 Sum_probs=174.4
Q ss_pred CCCHHHHHHHHHHhChhhhhhhhccCCCCCCccccccchhhccccCCCCccccCCCCccccccCCCCcccCCCCCCCCCC
Q psy14443 19 GLTFEQLQKLKEEMGTKLFNKKVFNSKSPSSKFKEHENKNFKRENKNRPREISSKIPQKKFAQQSAPVIPVQKNIPRDPR 98 (235)
Q Consensus 19 ~~sF~~L~k~q~~~g~k~~~e~~~~~~~~~~~~k~~~~~~~kR~nK~aP~E~SSKk~V~r~R~~~~~v~~~~k~~~RDPR 98 (235)
+++|+++.+||..+|+++|-....+...... ...+-.+||||+|||||+|||||| +||+++++..||||
T Consensus 48 ~~~~ee~~klqs~~~~kty~~~~~~~~~~~q-------~k~k~k~KHrP~E~SSKkpVsr~R----~Vv~~~kk~~rDPR 116 (256)
T KOG3190|consen 48 GKVFEEKEKLQSKLGNKTYFGTSEQDKKRGQ-------AKKKAKGKHRPREMSSKKPVSRFR----NVVGGPKKKKRDPR 116 (256)
T ss_pred cccHHHHHHHHHhhcccccccccccccchhh-------cccccccccCchhhhccCCchHHh----hccCCccccccCcc
Confidence 6779999999999999998876654322211 123348999999999999999999 99999999999999
Q ss_pred ccccCCCcchhhhhhhcCCchHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q psy14443 99 FDSLCGTFKEKAFHSAYKFIDDIREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAKQRHE----KDQQEKEEHT 174 (235)
Q Consensus 99 Fd~~~G~~~~~~f~k~Y~FL~e~r~~E~~~Lk~~lkk~k~~~~~e~lk~~l~r~~~q~~~~~~~~~----~~e~~~e~kk 174 (235)
||+++|.||+++|++||.|||+||..|| +|++.|..++.++++.++.+ .|..++.+.+.+.. ..++..+++.
T Consensus 117 FD~lsG~l~~~~~~knYqFLde~R~~E~-eLkk~l~~~k~~~~~~q~~r---q~~~~~~s~ker~~~ekr~~~~~~elk~ 192 (256)
T KOG3190|consen 117 FDALSGDLDEECFRKNYQFLDEIRVKEI-ELKKELNKAKAEEKIDQLER---QMTQHLMSTKERTQAEKRHAETRKELKD 192 (256)
T ss_pred hhhccCccCHHHHHhhhhhHhhhhhhHH-HHHHHHHhhhchHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999 89999999998887776655 44444444433333 4589999999
Q ss_pred HHHHHHHcCCCCcccchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhhhhhhhccCCCC
Q psy14443 175 ARIQALKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKERSQHNYF 234 (235)
Q Consensus 175 ~e~e~vk~GKkPfflKkse~Kk~~l~~kf~~Lk~~Gkl~K~lekkRKK~~~Ke~k~l~~~ 234 (235)
.+++++++|++|||||+|+++++++.++|++|+.+++|++||+|+|||+|+||+++|||.
T Consensus 193 ~e~e~~k~G~~Py~LKKsE~Rkl~~~~Ky~~lK~skkLdkylerKRkk~a~Ke~k~~P~~ 252 (256)
T KOG3190|consen 193 DERERAKEGKRPYFLKKSEQRKLDQEEKYKELKKSKKLDKYLERKRKKRAGKEKKHLPFE 252 (256)
T ss_pred HHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhcCccc
Confidence 999999999999999999999999999999999999999999999999999999999984
No 3
>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=41.62 E-value=14 Score=28.54 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=25.0
Q ss_pred CCCCccccccCCCCcccCCCCCCCCCCccccCCCcchhh
Q psy14443 72 SKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKA 110 (235)
Q Consensus 72 SKk~V~r~R~~~~~v~~~~k~~~RDPRFd~~~G~~~~~~ 110 (235)
+|+. |++| .||.. ...+||=||=...|.|||..
T Consensus 11 ~kk~-P~Yr----IVVaD-srs~RDGr~IE~lG~ynP~~ 43 (87)
T COG0228 11 SKKR-PFYR----IVVAD-SRSPRDGRFIERLGTYNPLL 43 (87)
T ss_pred CccC-CeEE----EEEec-cCCCCCCcchhhhcccCCCC
Confidence 4444 7888 66543 44689999999999999955
No 4
>PRK10203 hypothetical protein; Provisional
Probab=40.53 E-value=2e+02 Score=23.44 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=36.9
Q ss_pred hhhhcCCchHH--HHHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHHHHHH
Q psy14443 111 FHSAYKFIDDI--REKEISILKKKLKKEKNPEEK-EKVKYLVQRMENQMRE 158 (235)
Q Consensus 111 f~k~Y~FL~e~--r~~E~~~Lk~~lkk~k~~~~~-e~lk~~l~r~~~q~~~ 158 (235)
.-+|-+||.+. -.+|+..|...|..+.++.++ ..+...|.-++-++..
T Consensus 49 ilknag~lP~el~LrKE~~~l~~~l~~~~d~~~~~~~~~k~L~~l~lr~~~ 99 (122)
T PRK10203 49 LLKNAGCLPPELEQRREAIQLLDLLKGIREDDPQYQEVSRRLSLLELKLRQ 99 (122)
T ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 55778899875 578999999999998876655 4788888777776653
No 5
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=36.97 E-value=2.2e+02 Score=26.69 Aligned_cols=73 Identities=27% Similarity=0.413 Sum_probs=42.5
Q ss_pred CCCCccccCCCcchhhhhhhcCCchHHHHHHHHH--HHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14443 95 RDPRFDSLCGTFKEKAFHSAYKFIDDIREKEISI--LKKKLKKEKN-----PEEKEKVKYLVQRMENQMREAKQRHEKDQ 167 (235)
Q Consensus 95 RDPRFd~~~G~~~~~~f~k~Y~FL~e~r~~E~~~--Lk~~lkk~k~-----~~~~e~lk~~l~r~~~q~~~~~~~~~~~e 167 (235)
|.-|+-+ ||.-....--.-=.+|--..++|+.. |+..|+.+-+ .-++++|+-+|.||..--.+.+=-..+.+
T Consensus 38 r~~rY~~-C~dNHGikPP~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQ 116 (305)
T PF15290_consen 38 RSGRYMS-CGDNHGIKPPNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQ 116 (305)
T ss_pred CCCceee-cccCCCCCCCCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445543 66432222222223577777777654 7777776532 45788888888888766655554444444
Q ss_pred H
Q psy14443 168 Q 168 (235)
Q Consensus 168 ~ 168 (235)
+
T Consensus 117 L 117 (305)
T PF15290_consen 117 L 117 (305)
T ss_pred H
Confidence 4
No 6
>KOG3850|consensus
Probab=28.10 E-value=1.8e+02 Score=28.45 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=33.2
Q ss_pred hhhhhcCCchHHHHHHH---HHHHHHHhhcCC--HHHHHHHHHHHHHHHHHHHHH
Q psy14443 110 AFHSAYKFIDDIREKEI---SILKKKLKKEKN--PEEKEKVKYLVQRMENQMREA 159 (235)
Q Consensus 110 ~f~k~Y~FL~e~r~~E~---~~Lk~~lkk~k~--~~~~e~lk~~l~r~~~q~~~~ 159 (235)
.|.+.|.|+-+-.+.|. +.|.++|..... ..+...|+.+|-+|+.++.-+
T Consensus 289 ~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQ 343 (455)
T KOG3850|consen 289 QIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQ 343 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777665554443 445666665543 467888999999999988543
No 7
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=27.48 E-value=1.8e+02 Score=27.20 Aligned_cols=42 Identities=29% Similarity=0.382 Sum_probs=30.7
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14443 116 KFIDDIREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAKQR 162 (235)
Q Consensus 116 ~FL~e~r~~E~~~Lk~~lkk~k~~~~~e~lk~~l~r~~~q~~~~~~~ 162 (235)
.=|.| |+.||.+|+.||..-...+ |..+-.|++.|+.-.+.|
T Consensus 82 ~~l~d-RetEI~eLksQL~RMrEDW----IEEECHRVEAQLALKEAR 123 (305)
T PF15290_consen 82 NRLHD-RETEIDELKSQLARMREDW----IEEECHRVEAQLALKEAR 123 (305)
T ss_pred HHHHh-hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 33444 8999999999999876444 777788888888654443
No 8
>PHA02047 phage lambda Rz1-like protein
Probab=25.19 E-value=3.5e+02 Score=21.46 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=22.4
Q ss_pred hhcCCchHHHH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q psy14443 113 SAYKFIDDIRE-----KEISILKKKLKKEKNPEEKEKVKYLVQRMENQ 155 (235)
Q Consensus 113 k~Y~FL~e~r~-----~E~~~Lk~~lkk~k~~~~~e~lk~~l~r~~~q 155 (235)
-+|+|.--||- .+.+.|..+|... .-....+++..+-++++
T Consensus 18 ~~y~~~~~~r~~g~~h~~a~~la~qLE~a--~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 18 ASYGFVQSYRALGIAHEEAKRQTARLEAL--EVRYATLQRHVQAVEAR 63 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 35777766654 5667777776554 22334444444444444
No 9
>CHL00005 rps16 ribosomal protein S16
Probab=20.97 E-value=44 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=22.4
Q ss_pred cccccCCCCcccCCCCCCCCCCccccCCCcchh
Q psy14443 77 KKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEK 109 (235)
Q Consensus 77 ~r~R~~~~~v~~~~k~~~RDPRFd~~~G~~~~~ 109 (235)
|.+| .|+- ....+||=||-...|.||+.
T Consensus 15 P~Yr----IVva-dsr~~RdGk~iE~lG~YnP~ 42 (82)
T CHL00005 15 AVYR----IVAI-DVRSRREGRDLEKVGFYDPI 42 (82)
T ss_pred CeEE----EEEE-eCCCCCCCcceeEeeeccCC
Confidence 6888 5553 44568999999999999996
No 10
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=19.61 E-value=1.9e+02 Score=25.18 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14443 143 EKVKYLVQRMENQMREAKQRHEKDQQEKE 171 (235)
Q Consensus 143 e~lk~~l~r~~~q~~~~~~~~~~~e~~~e 171 (235)
++|..+|.+++.+++....-.++-++-.+
T Consensus 185 ~~L~kei~~L~~~~~kEkq~nrkveln~e 213 (221)
T PF14335_consen 185 EKLEKEIAKLKKKIKKEKQFNRKVELNTE 213 (221)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44444444444444443333333333333
Done!