Query psy14443
Match_columns 235
No_of_seqs 148 out of 229
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 20:00:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_P Ribosomal protein S16; 32.9 25 0.00086 26.1 2.4 28 77-109 15-42 (88)
2 3pys_P 30S ribosomal protein S 29.0 24 0.00083 25.8 1.7 29 77-110 15-43 (83)
3 3i00_A HIP-I, huntingtin-inter 26.4 2.2E+02 0.0076 21.9 9.2 87 122-208 20-113 (120)
4 1r8i_A TRAC; VIRB5, helical bu 19.7 2.4E+02 0.0084 23.1 6.5 39 121-159 131-169 (213)
5 3r8n_P 30S ribosomal protein S 19.1 23 0.00078 25.9 -0.1 29 77-110 15-43 (82)
6 3osx_A 60 kDa chaperonin; alph 15.0 1.7E+02 0.0057 24.8 4.3 32 122-153 164-195 (201)
7 3m6c_A 60 kDa chaperonin 1; ch 13.9 1.9E+02 0.0064 24.3 4.3 33 122-154 157-189 (194)
8 3bn0_A 30S ribosomal protein S 13.3 24 0.00084 27.3 -1.3 28 77-109 16-43 (112)
9 1zq7_A Hypothetical protein MM 12.8 62 0.0021 27.4 1.0 11 93-103 82-92 (207)
10 2a26_A Calcyclin-binding prote 12.8 3.1E+02 0.011 17.9 6.1 37 122-158 9-45 (50)
No 1
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=32.87 E-value=25 Score=26.06 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=22.2
Q ss_pred cccccCCCCcccCCCCCCCCCCccccCCCcchh
Q psy14443 77 KKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEK 109 (235)
Q Consensus 77 ~r~R~~~~~v~~~~k~~~RDPRFd~~~G~~~~~ 109 (235)
|++| .||. .....||=||-...|.||+.
T Consensus 15 PfYr----IVva-dsr~~RDGr~IE~lG~YnP~ 42 (88)
T 3bbn_P 15 AVYR----IVAI-DVRSRREGRDLQKVGFYDPI 42 (88)
T ss_dssp CCCC----CCCE-ETTSCSSSCCSSCCCCBCTT
T ss_pred CeEE----EEEE-ecCCCCCCCcEeEEEeccCC
Confidence 7888 6554 34467999999999999986
No 2
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=29.04 E-value=24 Score=25.84 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=23.0
Q ss_pred cccccCCCCcccCCCCCCCCCCccccCCCcchhh
Q psy14443 77 KKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKA 110 (235)
Q Consensus 77 ~r~R~~~~~v~~~~k~~~RDPRFd~~~G~~~~~~ 110 (235)
|++| .||. ....+||=||-...|.||+..
T Consensus 15 PfYr----IVva-dsr~~RdGr~IE~lG~YnP~~ 43 (83)
T 3pys_P 15 PHYR----IVVT-DARRKRDGKYIEKIGYYDPRK 43 (83)
T ss_dssp CCCC----CEEE-ESSSCTTCCCSEECCCBCSSC
T ss_pred CeEE----EEEE-ecCCCCCCCceeeeeEEcCCC
Confidence 7888 6654 344689999999999999854
No 3
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.44 E-value=2.2e+02 Score=21.88 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--C-c--ccchhHH
Q psy14443 122 REKEISILKKKLKKEKN--PEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHTARIQALKHGEK--P-L--FRKKSEK 194 (235)
Q Consensus 122 r~~E~~~Lk~~lkk~k~--~~~~e~lk~~l~r~~~q~~~~~~~~~~~e~~~e~kk~e~e~vk~GKk--P-f--flKkse~ 194 (235)
...|+..|+..|...+. ......|+..|..|+..+........+.-+.-+..+.+.+....... | - =+.-.|.
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~e~E~ 99 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIER 99 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566666666666543 34566777888888888876654444444445556666665555432 1 1 1455677
Q ss_pred HHHHHHHHHHHhhh
Q psy14443 195 TMLNLVQKFETLKK 208 (235)
Q Consensus 195 Kk~~l~~kf~~Lk~ 208 (235)
|.....++|..||.
T Consensus 100 kAqa~Eerf~KLKe 113 (120)
T 3i00_A 100 KAQANEQRYSKLKE 113 (120)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 77777888888875
No 4
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=19.68 E-value=2.4e+02 Score=23.14 Aligned_cols=39 Identities=8% Similarity=0.177 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q psy14443 121 IREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREA 159 (235)
Q Consensus 121 ~r~~E~~~Lk~~lkk~k~~~~~e~lk~~l~r~~~q~~~~ 159 (235)
-|-..|..|..+|..++|+.+...|+..|+-....+...
T Consensus 131 ~rl~~I~~L~~~I~~a~d~K~~aDLq~rI~aE~a~iqne 169 (213)
T 1r8i_A 131 QELSDMQALTEQIKSTPDLKSIADLQARIQTSQGAIQGE 169 (213)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999887766655443
No 5
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=19.10 E-value=23 Score=25.94 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=22.7
Q ss_pred cccccCCCCcccCCCCCCCCCCccccCCCcchhh
Q psy14443 77 KKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKA 110 (235)
Q Consensus 77 ~r~R~~~~~v~~~~k~~~RDPRFd~~~G~~~~~~ 110 (235)
|++| .||- .....||=||-...|.||+..
T Consensus 15 PfYr----IVva-dsr~~RdGr~IE~lG~YnP~~ 43 (82)
T 3r8n_P 15 PFYQ----VVVA-DSRNARNGRFIERVGFFNPIA 43 (82)
T ss_dssp CCEE----EEEE-ETTSCTTSCEEEEEEEECTTC
T ss_pred CEEE----EEEe-ecCCCCCCCceeeeeEEcCCC
Confidence 7888 6554 344689999999999999863
No 6
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=15.01 E-value=1.7e+02 Score=24.77 Aligned_cols=32 Identities=9% Similarity=0.325 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q psy14443 122 REKEISILKKKLKKEKNPEEKEKVKYLVQRME 153 (235)
Q Consensus 122 r~~E~~~Lk~~lkk~k~~~~~e~lk~~l~r~~ 153 (235)
-+.-+.+|+.+|..+....++++|+..|.+|.
T Consensus 164 I~~Rv~qIr~qie~t~S~ydkEKLqERLAKLs 195 (201)
T 3osx_A 164 IAARVTQIRQQIEESTSDYDREKLQERVAKLA 195 (201)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 45678999999999999999999999998774
No 7
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=13.86 E-value=1.9e+02 Score=24.29 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q psy14443 122 REKEISILKKKLKKEKNPEEKEKVKYLVQRMEN 154 (235)
Q Consensus 122 r~~E~~~Lk~~lkk~k~~~~~e~lk~~l~r~~~ 154 (235)
-+.-+.+++.+|..+....++++|+..|.+|..
T Consensus 157 I~~Rv~qIr~~ie~t~s~ydkEKLqERlAkLsG 189 (194)
T 3m6c_A 157 VANRAKHLRAEIDKSDSDWDREKLGERLAKLAG 189 (194)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999999988753
No 8
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=13.27 E-value=24 Score=27.30 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=17.1
Q ss_pred cccccCCCCcccCCCCCCCCCCccccCCCcchh
Q psy14443 77 KKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEK 109 (235)
Q Consensus 77 ~r~R~~~~~v~~~~k~~~RDPRFd~~~G~~~~~ 109 (235)
|++| .||. ....+||=||-...|.|||.
T Consensus 16 PfYr----IVVa-DsR~~RDGr~IE~lG~YnP~ 43 (112)
T 3bn0_A 16 PIYR----IVVM-DAKSPREGKYIDILGTYDPK 43 (112)
T ss_dssp EEEE----EEEE-ECC------CSEEEEEEETT
T ss_pred CeEE----EEEE-ecCCCCCCCCEeEeeeccCC
Confidence 7888 5554 34468999999999999997
No 9
>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1
Probab=12.83 E-value=62 Score=27.36 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=9.1
Q ss_pred CCCCCCccccC
Q psy14443 93 IPRDPRFDSLC 103 (235)
Q Consensus 93 ~~RDPRFd~~~ 103 (235)
-.+||||.++.
T Consensus 82 A~~DpRF~Pl~ 92 (207)
T 1zq7_A 82 ATRDPRFPTVE 92 (207)
T ss_dssp HHSCTTSCCCC
T ss_pred ccCCCCCCCCC
Confidence 46799999985
No 10
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=12.81 E-value=3.1e+02 Score=17.89 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q psy14443 122 REKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMRE 158 (235)
Q Consensus 122 r~~E~~~Lk~~lkk~k~~~~~e~lk~~l~r~~~q~~~ 158 (235)
-..++++|+.-+..++.|.-+.-|...++.++..+..
T Consensus 9 L~~DL~El~~Ll~~AkR~rVk~~L~~ei~~lE~ei~~ 45 (50)
T 2a26_A 9 LQKDLEEVKVLLEKATRKRVRDALTAEKSKIETEIKN 45 (50)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999887763
Done!