Query psy14443
Match_columns 235
No_of_seqs 148 out of 229
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 20:00:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14443.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14443hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sjpa2 c.8.5.1 (A:189-372) Gr 19.8 59 0.0043 24.6 4.6 32 122-153 151-182 (184)
2 d1kida_ c.8.5.1 (A:) GroEL, A 18.2 98 0.0071 23.5 5.7 35 120-154 157-191 (193)
3 d1j2jb_ a.7.8.1 (B:) ADP-ribos 16.8 1E+02 0.0075 18.1 5.4 33 124-156 5-37 (41)
4 d1r8ia_ a.8.7.1 (A:) Typo IV s 16.3 1.6E+02 0.012 21.4 6.5 57 122-181 125-181 (187)
5 d1vaja1 d.309.1.1 (A:3-205) Hy 9.8 43 0.0031 26.1 1.0 11 93-103 85-95 (203)
6 d2gy9p1 d.27.1.1 (P:1-78) Ribo 9.2 37 0.0027 22.7 0.4 28 77-109 15-42 (78)
7 d2uubp1 d.27.1.1 (P:1-83) Ribo 8.9 31 0.0023 23.4 -0.2 28 77-109 15-42 (83)
8 d1zq7a1 d.309.1.1 (A:1-199) Hy 8.4 52 0.0038 25.6 1.0 11 93-103 82-92 (199)
9 d1wsca1 d.309.1.1 (A:3-227) Hy 7.9 57 0.0041 25.9 1.0 11 93-103 94-104 (225)
10 d1iyjb5 b.40.4.3 (B:2980-3117) 7.2 52 0.0038 24.5 0.4 18 94-111 9-26 (138)
No 1
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Probab=19.83 E-value=59 Score=24.63 Aligned_cols=32 Identities=6% Similarity=0.294 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q psy14443 122 REKEISILKKKLKKEKNPEEKEKVKYLVQRME 153 (235)
Q Consensus 122 r~~E~~~Lk~~lkk~k~~~~~e~lk~~l~r~~ 153 (235)
-..=+++|+.+|..+.++.+++.|+..|.+|.
T Consensus 151 I~~Ri~~Lk~~l~~~~~~~e~~~L~eRLAkLs 182 (184)
T d1sjpa2 151 IAGRVAQIRQEIENSDSDYDREKLQERLAKLA 182 (184)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45568899999999999999999999998874
No 2
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}
Probab=18.23 E-value=98 Score=23.53 Aligned_cols=35 Identities=9% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q psy14443 120 DIREKEISILKKKLKKEKNPEEKEKVKYLVQRMEN 154 (235)
Q Consensus 120 e~r~~E~~~Lk~~lkk~k~~~~~e~lk~~l~r~~~ 154 (235)
+..+.=+.+|+.+|..+.++.+++.|+..|.+|..
T Consensus 157 ~~I~~Ri~~Lk~~l~~~~~~~~~e~L~eRlakLsG 191 (193)
T d1kida_ 157 AAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAG 191 (193)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 34566689999999999999999999999988764
No 3
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.75 E-value=1e+02 Score=18.12 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q psy14443 124 KEISILKKKLKKEKNPEEKEKVKYLVQRMENQM 156 (235)
Q Consensus 124 ~E~~~Lk~~lkk~k~~~~~e~lk~~l~r~~~q~ 156 (235)
.|...|=..|=+.++|++....-++|.+|..+.
T Consensus 5 EeksklL~~LLkS~~PeDLqaANrLIK~mVked 37 (41)
T d1j2jb_ 5 EEKSKMLARLLKSSHPEDLRAANKLIKEMVQED 37 (41)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 366777788888999999999999999887654
No 4
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC {Escherichia coli [TaxId: 562]}
Probab=16.31 E-value=1.6e+02 Score=21.42 Aligned_cols=57 Identities=9% Similarity=0.138 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14443 122 REKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHTARIQALK 181 (235)
Q Consensus 122 r~~E~~~Lk~~lkk~k~~~~~e~lk~~l~r~~~q~~~~~~~~~~~e~~~e~kk~e~e~vk 181 (235)
|-..|..|..+|..++|+.+...|+..|+-....+.... ..-++.......+..++.
T Consensus 125 rl~~i~~L~~~I~~a~D~K~~~DLq~rI~~E~a~iqne~---~kLq~~~~~~~ae~~l~~ 181 (187)
T d1r8ia_ 125 ELSDMQALTEQIKSTPDLKSIADLQARIQTSQGAIQGEQ---AKLNLMNMLQQSQDKLLR 181 (187)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999988876666554433 223333333444444443
No 5
>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=9.78 E-value=43 Score=26.15 Aligned_cols=11 Identities=36% Similarity=0.600 Sum_probs=9.0
Q ss_pred CCCCCCccccC
Q psy14443 93 IPRDPRFDSLC 103 (235)
Q Consensus 93 ~~RDPRFd~~~ 103 (235)
-..||||.++.
T Consensus 85 A~~DpRF~Pl~ 95 (203)
T d1vaja1 85 AVDDPRFPPVK 95 (203)
T ss_dssp HHCCTTSCCCC
T ss_pred HhCCCCCCCCC
Confidence 35799999885
No 6
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
Probab=9.18 E-value=37 Score=22.70 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=22.2
Q ss_pred cccccCCCCcccCCCCCCCCCCccccCCCcchh
Q psy14443 77 KKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEK 109 (235)
Q Consensus 77 ~r~R~~~~~v~~~~k~~~RDPRFd~~~G~~~~~ 109 (235)
|++| .|+- .....||=+|-...|.||+.
T Consensus 15 P~Yr----IVv~-d~r~~rdgk~iE~lG~YnP~ 42 (78)
T d2gy9p1 15 PFYQ----VVVA-DSRNARNGRFIERVGFFNPI 42 (78)
T ss_dssp CCEE----EEEE-ETTSCTTSCCSEECCEECSS
T ss_pred CeEE----EEEe-ecCCCCCCcceeeeeeECCc
Confidence 6788 5554 45578999999999999984
No 7
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}
Probab=8.90 E-value=31 Score=23.38 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=22.2
Q ss_pred cccccCCCCcccCCCCCCCCCCccccCCCcchh
Q psy14443 77 KKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEK 109 (235)
Q Consensus 77 ~r~R~~~~~v~~~~k~~~RDPRFd~~~G~~~~~ 109 (235)
|+|| .|+. ....+||=+|-...|.||+.
T Consensus 15 P~yr----IVv~-d~r~~rdGk~IE~lG~YnP~ 42 (83)
T d2uubp1 15 PHYR----IVVT-DARRKRDGKYIEKIGYYDPR 42 (83)
T ss_dssp CCEE----EEEE-ETTSCTTSCCSEEEEEECTT
T ss_pred CeEE----EEEE-ecCCCCCCcceeeeeEECCC
Confidence 6888 6554 44468999999999999995
No 8
>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484 {Methanosarcina mazei [TaxId: 2209]}
Probab=8.42 E-value=52 Score=25.63 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=9.0
Q ss_pred CCCCCCccccC
Q psy14443 93 IPRDPRFDSLC 103 (235)
Q Consensus 93 ~~RDPRFd~~~ 103 (235)
-.+||||.++.
T Consensus 82 A~~DpRF~pl~ 92 (199)
T d1zq7a1 82 ATRDPRFPTVE 92 (199)
T ss_dssp HHSCTTSCCCC
T ss_pred HhCCCCCCCCC
Confidence 46799999886
No 9
>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=7.86 E-value=57 Score=25.90 Aligned_cols=11 Identities=45% Similarity=0.697 Sum_probs=8.8
Q ss_pred CCCCCCccccC
Q psy14443 93 IPRDPRFDSLC 103 (235)
Q Consensus 93 ~~RDPRFd~~~ 103 (235)
-..||||.++.
T Consensus 94 A~~DpRF~Pl~ 104 (225)
T d1wsca1 94 AFSDPRFPPLS 104 (225)
T ss_dssp HHTCTTSCCCC
T ss_pred HhCCCCcCCCC
Confidence 46799998874
No 10
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.19 E-value=52 Score=24.45 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=13.9
Q ss_pred CCCCCccccCCCcchhhh
Q psy14443 94 PRDPRFDSLCGTFKEKAF 111 (235)
Q Consensus 94 ~RDPRFd~~~G~~~~~~f 111 (235)
.-||=|.+.||++|...+
T Consensus 9 l~~~~F~pp~~EvD~VGi 26 (138)
T d1iyjb5 9 LSDPAFQPPCSEVDVVGV 26 (138)
T ss_dssp GGCTTCCCGGGEEEEEEE
T ss_pred ccCcccCCCccceeEEEE
Confidence 459999999999886543
Done!