Your job contains 1 sequence.
>psy14443
MESSDIDEERVAIREELKGLTFEQLQKLKEEMGTKLFNKKVFNSKSPSSKFKEHENKNFK
RENKNRPREISSKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDD
IREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHTARIQAL
KHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKERSQHNYFE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14443
(235 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038235 - symbol:CG8461 species:7227 "Drosophila m... 294 5.2e-26 1
ZFIN|ZDB-GENE-030131-9751 - symbol:rrp36 "ribosomal RNA p... 269 2.3e-23 1
UNIPROTKB|A6QNR1 - symbol:RRP36 "Ribosomal RNA processing... 258 3.4e-22 1
UNIPROTKB|Q96EU6 - symbol:RRP36 "Ribosomal RNA processing... 249 3.0e-21 1
WB|WBGene00020705 - symbol:T22H9.1 species:6239 "Caenorha... 251 6.5e-21 1
UNIPROTKB|A5GFR5 - symbol:RRP36 "Novel protein similar to... 240 2.7e-20 1
UNIPROTKB|Q58D25 - symbol:KLHDC3 "Kelch domain-containing... 242 1.1e-19 1
RGD|2321693 - symbol:Rrp36 "ribosomal RNA processing 36 h... 215 1.2e-17 1
MGI|MGI:2385053 - symbol:Rrp36 "ribosomal RNA processing ... 212 2.5e-17 1
UNIPROTKB|E2RCI2 - symbol:KLHDC3 "Uncharacterized protein... 218 4.5e-17 1
UNIPROTKB|E1BSD7 - symbol:LOC100858699 "Uncharacterized p... 212 2.0e-16 1
UNIPROTKB|A4R1G4 - symbol:RRP36 "rRNA biogenesis protein ... 161 1.9e-11 1
DICTYBASE|DDB_G0278751 - symbol:DDB_G0278751 "UPF0399 fam... 149 3.5e-10 1
UNIPROTKB|E2RCI7 - symbol:KLHDC3 "Uncharacterized protein... 143 5.2e-10 1
TAIR|locus:2195082 - symbol:AT1G12650 "AT1G12650" species... 141 1.4e-09 1
ASPGD|ASPL0000005620 - symbol:AN6561 species:162425 "Emer... 130 9.1e-07 1
POMBASE|SPAC823.04 - symbol:SPAC823.04 "rRNA processing p... 115 5.5e-05 1
>FB|FBgn0038235 [details] [associations]
symbol:CG8461 species:7227 "Drosophila melanogaster"
[GO:0022008 "neurogenesis" evidence=IMP] EMBL:AE014297
GO:GO:0005634 GO:GO:0022008 GO:GO:0006364 KO:K14795
InterPro:IPR009292 PANTHER:PTHR21738 Pfam:PF06102 eggNOG:NOG265749
OMA:NRPREMS GeneTree:ENSGT00530000064271 EMBL:AY061371
RefSeq:NP_650367.1 UniGene:Dm.1196 IntAct:Q9VFJ1 MINT:MINT-1627285
EnsemblMetazoa:FBtr0082986 GeneID:41758 KEGG:dme:Dmel_CG8461
UCSC:CG8461-RA FlyBase:FBgn0038235 InParanoid:Q9VFJ1
OrthoDB:EOG4ZS7K8 GenomeRNAi:41758 NextBio:825428 Uniprot:Q9VFJ1
Length = 244
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 79/232 (34%), Positives = 116/232 (50%)
Query: 2 ESSDIDEERVAIREELKGLTFEQLQKLKEEMGTKLFNKKVFNSKSPSSXXXXXXXXXXXX 61
E+SD +E + AIRE+LKG++FE++ KLKEE+G K++ + V SKS
Sbjct: 14 EASDDNETQNAIREDLKGMSFEEIMKLKEELGAKVYKEAVLGSKSSRPQKPKAKTDLKRL 73
Query: 62 XXXXXXXXISSKIPQKKFAQQSAPVIPVQKNIP-RDPRFDSLCGTFKEKAFHSAYKFIDD 120
+ + Q F V +KN+ RDPRFD GT+ + F Y+F+
Sbjct: 74 NKNRPREMTTRR--QVPFLGAEHRV-ERKKNVELRDPRFDEKSGTYSAETFKKNYQFVSQ 130
Query: 121 IRXXXXXXXXXXXXXXXXXXXXXXXXYLVQRMENQMREAKQRHEKDQQEKEEHTARIQAL 180
IR +QR+ N+ E K+ H K +Q K+E +A IQ
Sbjct: 131 IRAKEVGQLKKKLDEVEDEAEKHHIKDTMQRLINKNVEDKKWHTKQKQLKKERSA-IQK- 188
Query: 181 KH--GEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKERSQ 230
KH G++P + K E+ LV +FE LK TGK+NKH+EK+ K AK+R +
Sbjct: 189 KHDLGQQPHYLTKKERRAKELVAQFEKLKNTGKLNKHMEKRRKKNAAKDRKR 240
>ZFIN|ZDB-GENE-030131-9751 [details] [associations]
symbol:rrp36 "ribosomal RNA processing 36 homolog
(S. cerevisiae)" species:7955 "Danio rerio" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA]
ZFIN:ZDB-GENE-030131-9751 GO:GO:0005634 GO:GO:0006364 CTD:88745
HOVERGEN:HBG081113 KO:K14795 InterPro:IPR009292 PANTHER:PTHR21738
Pfam:PF06102 OMA:NRPREMS GeneTree:ENSGT00530000064271 EMBL:CR936460
IPI:IPI00488522 RefSeq:NP_001073413.1 UniGene:Dr.18286
Ensembl:ENSDART00000045682 GeneID:321183 KEGG:dre:321183
InParanoid:Q1L876 NextBio:20807270 Uniprot:Q1L876
Length = 320
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 68/217 (31%), Positives = 110/217 (50%)
Query: 13 IREELKGLTFEQLQKLKEEMGTKLFNKKVFNSKSPSSXXXXXXXXXXXXXXXXXXXXISS 72
I++EL ++FE++ L+ ++GTK++NK + ISS
Sbjct: 104 IKKELSTMSFEEIMALQNKVGTKVYNKIAYGDTKQKKKNEPMKRLNKHRPQE-----ISS 158
Query: 73 KIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDDIRXXXXXXXXXX 132
K + F ++ V+PV+K I RDPRFD L G +K + F+ YKFI +I+
Sbjct: 159 K-QRVPFLRK---VVPVKKMISRDPRFDDLSGEYKPEIFNQTYKFIKNIQEKEAQEVRKQ 214
Query: 133 XXXXXXXXXXXXXXYLVQRMENQMREAKQRHEKDQQEKEEHTARIQALK-HGEKPLFRKK 191
L++RM+NQ R A+QR E++++++ E + + L G KP + KK
Sbjct: 215 LKKTKSKAKQEELKALLRRMDNQQR-ARQRQEQEREKELEFKRKQRELVGQGHKPFYLKK 273
Query: 192 SEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKER 228
S+K L L +K+ LKK+GK+ + KK K K+R
Sbjct: 274 SDKKKLELAEKYSELKKSGKLENFLSKKRKRNATKDR 310
>UNIPROTKB|A6QNR1 [details] [associations]
symbol:RRP36 "Ribosomal RNA processing protein 36 homolog"
species:9913 "Bos taurus" [GO:0042274 "ribosomal small subunit
biogenesis" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] GO:GO:0005730
GO:GO:0006364 GO:GO:0042274 GeneTree:ENSGT00700000104278
EMBL:BC148959 IPI:IPI00842054 RefSeq:NP_001098949.1
UniGene:Bt.101030 STRING:A6QNR1 Ensembl:ENSBTAT00000047039
GeneID:100125879 KEGG:bta:100125879 CTD:88745 HOVERGEN:HBG081113
KO:K14795 NextBio:20788862 ArrayExpress:A6QNR1 InterPro:IPR009292
PANTHER:PTHR21738 Pfam:PF06102 Uniprot:A6QNR1
Length = 246
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 68/232 (29%), Positives = 111/232 (47%)
Query: 2 ESSDIDEERVAIREELKGLTFEQLQKLKEEMGTKLFNKKVFNSKSPSSXXXXXXXXXXXX 61
E+ D E+ ++R + ++FE+L +L+ ++GTK + K++ S
Sbjct: 17 EAQDGGEDDGSLRNDTSHMSFEELLELQSQVGTKAY-KQLVTGSSTKKQSSRPPVQKGCV 75
Query: 62 XXXXXXXXISSKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDDI 121
+S+K+ + F +Q V+P+ K + RDPRFD L G + + F Y+F+DDI
Sbjct: 76 ADKHRPLEMSAKV-RVPFLRQ---VVPISKKVARDPRFDDLSGEYNPEVFDKTYQFLDDI 131
Query: 122 RXXXXXXXXXXXXXXXXXXXXXXXXYLVQRMENQMREAKQRHEKDQQE-----KEEHTAR 176
R +L+QRME Q E Q+ K QQE K+E A+
Sbjct: 132 RAREKELVKKQLKKHRSGEEHEKLQHLLQRMEQQ--EMAQKERKRQQELRLALKQERRAQ 189
Query: 177 IQALKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKER 228
Q G +P F KKSE+ L L +KF+ LK++ K+ + +K + K+R
Sbjct: 190 AQ---QGHRPYFLKKSEQRQLVLAEKFKELKRSKKLESFLSRKRRRNAGKDR 238
>UNIPROTKB|Q96EU6 [details] [associations]
symbol:RRP36 "Ribosomal RNA processing protein 36 homolog"
species:9606 "Homo sapiens" [GO:0005730 "nucleolus" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IDA] [GO:0042274 "ribosomal
small subunit biogenesis" evidence=IDA] GO:GO:0005730 EMBL:AL136304
GO:GO:0006364 GO:GO:0042274 OrthoDB:EOG4K0QNG CTD:88745
HOVERGEN:HBG081113 KO:K14795 InterPro:IPR009292 PANTHER:PTHR21738
Pfam:PF06102 eggNOG:NOG265749 EMBL:BC006293 EMBL:BC011933
EMBL:AF161371 IPI:IPI00106638 IPI:IPI00787473 RefSeq:NP_149103.1
UniGene:Hs.309231 ProteinModelPortal:Q96EU6 STRING:Q96EU6
PhosphoSite:Q96EU6 DMDM:74751848 PaxDb:Q96EU6 PRIDE:Q96EU6
Ensembl:ENST00000244496 GeneID:88745 KEGG:hsa:88745 UCSC:uc003otp.1
GeneCards:GC06P042995 HGNC:HGNC:21374 HPA:HPA029904 MIM:613475
neXtProt:NX_Q96EU6 PharmGKB:PA165618219 InParanoid:Q96EU6
OMA:NRPREMS GenomeRNAi:88745 NextBio:76220 Bgee:Q96EU6
CleanEx:HS_C6orf153 Genevestigator:Q96EU6
GermOnline:ENSG00000124541 Uniprot:Q96EU6
Length = 259
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 69/229 (30%), Positives = 108/229 (47%)
Query: 8 EERVAIREELKG---LTFEQLQKLKEEMGTKLFNKKVFNSKSPSSXXXXXXXXXXXXXXX 64
E R+ L+G ++FE+L +L+ ++GTK + K++ SP
Sbjct: 33 EPAAVARDLLRGTSNMSFEELLELQSQVGTKTY-KQLVAGNSPKKQASRPPIQNACVADK 91
Query: 65 XXXXXISSKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDDIRXX 124
+S+KI + F +Q V+P+ K + RDPRFD L G + + F Y+F++DIR
Sbjct: 92 HRPLEMSAKI-RVPFLRQ---VVPISKKVARDPRFDDLSGEYNPEVFDKTYQFLNDIRAK 147
Query: 125 XXXXXXXXXXXXXXXXXXXXXXYLVQRMENQMREAKQRHEKDQQE-----KEEHTARIQA 179
L+QRME Q E Q+ K QQE K+E A+ Q
Sbjct: 148 EKELVKKQLKKHLSGEEHEKLQQLLQRMEQQ--EMAQQERKQQQELHLALKQERRAQAQ- 204
Query: 180 LKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKER 228
G +P F KKSE+ L L +KF+ LK++ K+ + +K + K+R
Sbjct: 205 --QGHRPYFLKKSEQRQLALAEKFKELKRSKKLENFLSRKRRRNAGKDR 251
>WB|WBGene00020705 [details] [associations]
symbol:T22H9.1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
InterPro:IPR009292 PANTHER:PTHR21738 Pfam:PF06102 eggNOG:NOG265749
GeneTree:ENSGT00530000064271 EMBL:FO081740
ProteinModelPortal:Q8MNX1 PaxDb:Q8MNX1 EnsemblMetazoa:T22H9.1.1
EnsemblMetazoa:T22H9.1.2 UCSC:T22H9.1 WormBase:T22H9.1
HOGENOM:HOG000016328 InParanoid:Q8MNX1 OMA:EAPIFRT NextBio:901644
Uniprot:Q8MNX1
Length = 457
Score = 251 (93.4 bits), Expect = 6.5e-21, P = 6.5e-21
Identities = 61/232 (26%), Positives = 105/232 (45%)
Query: 2 ESSDIDEERVAIREELKGLTFEQLQKLKEEMGTKLFNKKVFNSKSPSSXXXXXXXXXXXX 61
E D ++ER+ REE+ + +++++KE++G KLFNK F +
Sbjct: 214 EEEDDEDERLKFREEISKMPLGKVKEMKEKLGIKLFNKTYFGTSEADKKRADEKKKAAEK 273
Query: 62 XXXXXXX--XISSKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFID 119
+SSK P F +K DPRFD+ G FKE F + Y+F+D
Sbjct: 274 ADKGQHRPREMSSKRPVSAFRNIYGGHEQEKKKKKWDPRFDARAGDFKEVCFENNYQFLD 333
Query: 120 DIRXXXXXXXXXXXXXXXXXXXXXXXXYL---VQRMENQMREAKQRHEKDQQEKEEHTAR 176
+IR L + +ME + + ++ + KE H
Sbjct: 334 EIRTGEMQDLRNEYNTARAEGDEKKAERLKNTLHKMETREKTRAEKRRHAETRKELHDDN 393
Query: 177 IQALKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKER 228
I+ + GE P+FR K++ ++ +K+E LKK K++K++++K K AK++
Sbjct: 394 IERMLRGEAPIFRTKAQVRRIDAEKKYEELKKDNKLDKYLQRKAKKESAKQK 445
>UNIPROTKB|A5GFR5 [details] [associations]
symbol:RRP36 "Novel protein similar to vertebrate
chromosome 6 open reading frame 153 (C6orf153)" species:9823 "Sus
scrofa" [GO:0042274 "ribosomal small subunit biogenesis"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] GO:GO:0005730 GO:GO:0006364
GO:GO:0042274 EMBL:CR956379 HOVERGEN:HBG081113 KO:K14795
InterPro:IPR009292 PANTHER:PTHR21738 Pfam:PF06102 OMA:NRPREMS
GeneTree:ENSGT00530000064271 RefSeq:NP_001116562.1
UniGene:Ssc.17083 STRING:A5GFR5 Ensembl:ENSSSCT00000001846
GeneID:100141407 KEGG:ssc:100141407 CTD:100141407
HOGENOM:HOG000243254 ArrayExpress:A5GFR5 Uniprot:A5GFR5
Length = 246
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 65/229 (28%), Positives = 107/229 (46%)
Query: 5 DIDEERVAIREELKGLTFEQLQKLKEEMGTKLFNKKVFNSKSPSSXXXXXXXXXXXXXXX 64
D +E+ +R ++FE+L +L+ ++GTK + K++ S
Sbjct: 20 DGEEDGGGLRNGTSDMSFEELLELQSQVGTKTY-KQLVTGNSTKKQSSRPPVQKACVADK 78
Query: 65 XXXXXISSKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDDIRXX 124
+S+K+ + F +Q V+P+ K + RDPRFD L G + + F Y+F++DIR
Sbjct: 79 HRPLEMSAKV-RVPFLRQ---VVPISKKVARDPRFDDLSGEYNPEVFDKTYQFLNDIRAR 134
Query: 125 XXXXXXXXXXXXXXXXXXXXXXYLVQRMENQMREAKQRHEKDQQE-----KEEHTARIQA 179
L+QRME Q + Q+ K QQE K+E A+ Q
Sbjct: 135 EKELVKKQLKKRRSGEEHEKLQQLLQRMEQQ--DMAQQERKRQQELRLALKQERRAQAQ- 191
Query: 180 LKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKER 228
G +P F KKSE+ L L +KF+ LK++ K+ + +K + K+R
Sbjct: 192 --QGHRPYFLKKSEQRQLVLAEKFKELKRSKKLESFLSRKRRRNAGKDR 238
>UNIPROTKB|Q58D25 [details] [associations]
symbol:KLHDC3 "Kelch domain-containing protein 3"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] InterPro:IPR011498 InterPro:IPR015915
Pfam:PF07646 GO:GO:0005737 GO:GO:0003682 GO:GO:0000790
Gene3D:2.120.10.80 GeneTree:ENSGT00700000104278
HOGENOM:HOG000276538 HOVERGEN:HBG071311 OrthoDB:EOG4K0QNG
InterPro:IPR009292 Pfam:PF06102 EMBL:DAAA02055080 EMBL:BT021772
IPI:IPI00712059 STRING:Q58D25 Ensembl:ENSBTAT00000016944
InParanoid:Q58D25 Uniprot:Q58D25
Length = 550
Score = 242 (90.2 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 64/214 (29%), Positives = 102/214 (47%)
Query: 20 LTFEQLQKLKEEMGTKLFNKKVFNSKSPSSXXXXXXXXXXXXXXXXXXXXISSKIPQKKF 79
++FE+L +L+ ++GTK + K++ S +S+K+ + F
Sbjct: 339 MSFEELLELQSQVGTKAY-KQLVTGSSTKKQSSRPPVQKGCVADKHRPLEMSAKV-RVPF 396
Query: 80 AQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDDIRXXXXXXXXXXXXXXXXX 139
+Q V+P+ K + RDPRFD L G + + F Y+F+DDIR
Sbjct: 397 LRQ---VVPISKKVARDPRFDDLSGEYNPEVFDKTYQFLDDIRAREKELVKKQLKKHRSG 453
Query: 140 XXXXXXXYLVQRMENQMREAKQRHEKDQQE-----KEEHTARIQALKHGEKPLFRKKSEK 194
+L+QRME Q E Q+ K QQE K+E A+ Q G +P F KKSE+
Sbjct: 454 EEHEKLQHLLQRMEQQ--EMAQKERKRQQELRLALKQERRAQAQ---QGHRPYFLKKSEQ 508
Query: 195 TMLNLVQKFETLKKTGKINKHIEKKTKALKAKER 228
L L +KF+ LK++ K+ + +K + K+R
Sbjct: 509 RQLVLAEKFKELKRSKKLESFLSRKRRRNAGKDR 542
>RGD|2321693 [details] [associations]
symbol:Rrp36 "ribosomal RNA processing 36 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0006364 "rRNA processing"
evidence=IEA;ISO] [GO:0042274 "ribosomal small subunit biogenesis"
evidence=IEA;ISO] RGD:2321693 GO:GO:0005730 GO:GO:0006364
GO:GO:0042274 OrthoDB:EOG4K0QNG InterPro:IPR009292
PANTHER:PTHR21738 Pfam:PF06102 OMA:NRPREMS
GeneTree:ENSGT00530000064271 IPI:IPI00373748
Ensembl:ENSRNOT00000024010 UCSC:RGD:2321693 Uniprot:D3ZDJ5
Length = 244
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 55/164 (33%), Positives = 81/164 (49%)
Query: 70 ISSKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDDIRXXXXXXX 129
+S+K+P F +Q V+P+ K + RDPRFD L G + + F Y+F++DIR
Sbjct: 82 MSAKVPVP-FLRQ---VVPISKKVARDPRFDDLSGEYNPEVFDKTYQFLNDIRAKEKQLV 137
Query: 130 XXXXXXXXXXXXXXXXXYLVQRMENQMREAKQRHEKDQQE-----KEEHTARIQALKHGE 184
L+QRME Q E Q+ K QQE K+E A Q G
Sbjct: 138 KRQLKKHRSGEKHEKLQQLLQRMEQQ--EMAQQERKQQQELRLALKQERRALAQ---QGH 192
Query: 185 KPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKER 228
+P F KKSE+ L L +KF+ LK++ K+ + +K + K+R
Sbjct: 193 RPYFLKKSEQRQLALAEKFKDLKRSKKLESFLSRKRRRNAGKDR 236
>MGI|MGI:2385053 [details] [associations]
symbol:Rrp36 "ribosomal RNA processing 36 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0042274 "ribosomal small subunit biogenesis"
evidence=ISO] MGI:MGI:2385053 GO:GO:0005730 GO:GO:0006364
GO:GO:0042274 OrthoDB:EOG4K0QNG CTD:88745 HOVERGEN:HBG081113
KO:K14795 InterPro:IPR009292 PANTHER:PTHR21738 Pfam:PF06102
eggNOG:NOG265749 EMBL:AK148237 EMBL:BC011248 IPI:IPI00128482
RefSeq:NP_659106.1 UniGene:Mm.45101 STRING:Q3UFY0
PhosphoSite:Q3UFY0 PRIDE:Q3UFY0 Ensembl:ENSMUST00000024766
GeneID:224823 KEGG:mmu:224823 UCSC:uc008ctu.1
GeneTree:ENSGT00530000064271 InParanoid:Q3UFY0 NextBio:377393
Bgee:Q3UFY0 CleanEx:MM_BC011248 Genevestigator:Q3UFY0
GermOnline:ENSMUSG00000023971 Uniprot:Q3UFY0
Length = 244
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 63/233 (27%), Positives = 107/233 (45%)
Query: 1 MESSDIDEERVAIREELKGLTFEQLQKLKEEMGTKLFNKKVFNSKSPSSXXXXXXXXXXX 60
ME ++ +R ++ + ++FE+L +L+ + K + V + +S
Sbjct: 19 MEGGEVTGDR--LKADTPDVSFEELLRLQGQGRPKAHKQLV----AGNSTRTRSPQQPVC 72
Query: 61 XXXXXXXXXISSKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDD 120
+S+K+ + F +Q V+P+ K + RDPRFD L G + + F Y+F++D
Sbjct: 73 VADKHRPLEMSAKV-RVPFLRQ---VVPISKKVARDPRFDDLSGDYNPEVFDKTYQFLND 128
Query: 121 IRXXXXXXXXXXXXXXXXXXXXXXXXYLVQRMENQMREAKQRHEKDQQE-----KEEHTA 175
IR L+QRME Q E Q+ K QQE K+E A
Sbjct: 129 IRAKEKQLVKKQLKRHRSGEERDKLQQLLQRMEQQ--EMAQQERKQQQELRLALKQERRA 186
Query: 176 RIQALKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKER 228
+ Q G +P F KKSE+ L L +KF+ L+++ K+ + +K + K+R
Sbjct: 187 QAQ---QGHRPYFLKKSEQRQLALAEKFKELRRSKKLESFLSRKRRRNAGKDR 236
>UNIPROTKB|E2RCI2 [details] [associations]
symbol:KLHDC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] InterPro:IPR011498 InterPro:IPR015915 Pfam:PF07646
GO:GO:0005737 GO:GO:0003682 GO:GO:0000790 Gene3D:2.120.10.80
GeneTree:ENSGT00700000104278 InterPro:IPR009292 Pfam:PF06102
EMBL:AAEX03008332 Ensembl:ENSCAFT00000002776 OMA:LIDDIVY
Uniprot:E2RCI2
Length = 553
Score = 218 (81.8 bits), Expect = 4.5e-17, P = 4.5e-17
Identities = 62/217 (28%), Positives = 101/217 (46%)
Query: 20 LTFEQLQKLKEEMGTKLFNKKVFNSKSPSSXXXXXXXXXXXXXXXXXXXXISSKIPQKKF 79
++FE+L +L+ ++GTK + K++ S +S+K+ + F
Sbjct: 339 MSFEELLELQSQVGTKTY-KRLVAGNSSKKEGSRPRVQNACVADKHRPLEMSAKV-RVPF 396
Query: 80 AQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDDIRXXXXXXXXXXXXXXXXX 139
+Q V+P+ K + RDPRFD L G + + F Y+F++DIR
Sbjct: 397 LRQ---VVPISKKVARDPRFDDLSGEYNPEVFDKTYEFLNDIRAKEKENVELVKKQLKKH 453
Query: 140 XXXXXXX---YLVQRMENQMREAKQRHEKDQQE-----KEEHTARIQALKHGEKPLFRKK 191
L+QRME Q E Q+ + QQE K+E AR Q G +P F KK
Sbjct: 454 HSGQEHEKLQQLLQRMEQQ--EMAQQERRRQQELRLALKQEQRARAQ---QGHRPYFLKK 508
Query: 192 SEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKER 228
SE+ L L +KF+ LK++ ++ + +K + K+R
Sbjct: 509 SEQRQLVLAEKFKELKRSKRLESFLSRKRRRNAGKDR 545
>UNIPROTKB|E1BSD7 [details] [associations]
symbol:LOC100858699 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR011498 InterPro:IPR015915
Pfam:PF07646 GO:GO:0005737 GO:GO:0003682 GO:GO:0000790
Gene3D:2.120.10.80 GeneTree:ENSGT00700000104278 InterPro:IPR009292
Pfam:PF06102 OMA:LIDDIVY EMBL:AADN02044230 EMBL:AADN02044231
IPI:IPI00600215 Ensembl:ENSGALT00000013911 Uniprot:E1BSD7
Length = 551
Score = 212 (79.7 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 55/167 (32%), Positives = 82/167 (49%)
Query: 70 ISSKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDDIRXXXXXXX 129
+S+K P F +Q V+PV K + RDPRFD L G + + F Y F+D I+
Sbjct: 388 MSAKKPMP-FLRQ---VVPVTKKVHRDPRFDDLSGEYNPEIFMKTYSFLDTIKKQEKEMV 443
Query: 130 XXXXXXXXXXXXXXXXXYLVQRMENQMREAKQRHEKDQQEKEEHTARIQALKHGEKPLFR 189
L+ RM Q + K++ ++ ++E + + K G+KP F
Sbjct: 444 QKQLKKCRNVEQKEKLQQLLNRMTQQEQAQKKQQKRRERELTLKRQQRELAKQGKKPFFL 503
Query: 190 KKSEKTMLNLVQKFETLKKTGKINKHIEKKTK--ALKAKER--SQHN 232
KKSEK L L +K+ LK++GK+ + KK K A+K K R SQ N
Sbjct: 504 KKSEKRKLELAEKYAELKRSGKLESFLNKKRKRNAVKDKRRLPSQKN 550
>UNIPROTKB|A4R1G4 [details] [associations]
symbol:RRP36 "rRNA biogenesis protein RRP36" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0005730 GO:GO:0030529 EMBL:CM001231
GO:GO:0006364 KO:K14795 InterPro:IPR009292 PANTHER:PTHR21738
Pfam:PF06102 eggNOG:NOG265749 OrthoDB:EOG4STWF3
RefSeq:XP_003709678.1 STRING:A4R1G4 EnsemblFungi:MGG_06938T0
GeneID:2685111 KEGG:mgr:MGG_06938 Uniprot:A4R1G4
Length = 316
Score = 161 (61.7 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 48/165 (29%), Positives = 81/165 (49%)
Query: 70 ISSKIPQKKFAQQSAPVIPVQKNIPRDPRFDS-LCGTFKEKAFHSAYKFIDDIRXXXXXX 128
+SSK P ++ + P P + PRD RF+ L G ++ F Y F+D+ R
Sbjct: 147 MSSKRPVSRYREVVKPP-PNARPKPRDVRFEQELTGEDYQR-FRRNYAFLDEYRNDEMAK 204
Query: 129 XXXXXXXXXXXXXXXX--XXYLVQRMENQMREAKQRHEKDQQEKEEHTARIQAL-KHGEK 185
+++ME++ R ++ R +++ + EH + + L K G+K
Sbjct: 205 LREIIARKKGVTPADREDAKLKLRKMEDEKR-SQDRKDREHELMREHKKKEKELVKQGKK 263
Query: 186 PLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKERSQ 230
P F KKSE+ L L+ K+ + K G+++K IEKK K + KE+ Q
Sbjct: 264 PFFLKKSEQKKLLLMDKYAGMSK-GQVDKAIEKKRKKVAGKEKKQ 307
>DICTYBASE|DDB_G0278751 [details] [associations]
symbol:DDB_G0278751 "UPF0399 family protein"
species:44689 "Dictyostelium discoideum" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] dictyBase:DDB_G0278751 GO:GO:0005730
EMBL:AAFI02000024 GO:GO:0006364 KO:K14795 InterPro:IPR009292
PANTHER:PTHR21738 Pfam:PF06102 eggNOG:NOG265749 RefSeq:XP_641913.1
EnsemblProtists:DDB0206170 GeneID:8621674 KEGG:ddi:DDB_G0278751
OMA:ERMESTW ProtClustDB:CLSZ2497232 Uniprot:Q54XT8
Length = 298
Score = 149 (57.5 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 52/241 (21%), Positives = 98/241 (40%)
Query: 2 ESSDIDEERVAIREELKGLTFEQLQKLKEEMGTKLFN----------KKVFNSKSPSSXX 51
E D +EE + I+++L ++F L K K+ T N +K F +
Sbjct: 49 EDDDENEEEL-IKQQLSNVSFSSLLKYKKNGPTDKLNLNTITKNLQQQKSFKKEEQQEKE 107
Query: 52 XXXXXXXXXXXXXXXXXXI--SSKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCG-TFKE 108
+ ++ P +F Q V + N+ RDPRFDSL G + E
Sbjct: 108 EMNSKNKYKIKRESSDAPVEMTAMKPVSRFRQ--VVVNKTKMNV-RDPRFDSLSGGKYNE 164
Query: 109 KAFHSAYKFIDDIRXXXXXXXXXXXXXXXXXXXXXXXXYLVQRMENQMREAKQRHEKDQQ 168
+ Y F+DD+ +Q ++Q++ + + +K +
Sbjct: 165 DLYRKRYGFLDDVIKRDVERMESTWKQMDDCRERDQLYKKIQSKKSQLKTQQLKDQKRET 224
Query: 169 EKEEHTARIQALKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKER 228
+ + + I+++K G+ P L +KF+ LK + K++K +E K K + +KE+
Sbjct: 225 KNKLWSNEIESVKKGKTPYHISNKTVKQFELQEKFKQLKASNKLDKFMETKRKRISSKEK 284
Query: 229 S 229
+
Sbjct: 285 T 285
>UNIPROTKB|E2RCI7 [details] [associations]
symbol:KLHDC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] GO:GO:0005634 GO:GO:0006364
GeneTree:ENSGT00700000104278 InterPro:IPR009292 PANTHER:PTHR21738
Pfam:PF06102 EMBL:AAEX03008332 Ensembl:ENSCAFT00000002771
NextBio:20850844 Uniprot:E2RCI7
Length = 167
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 32/115 (27%), Positives = 59/115 (51%)
Query: 8 EERVAIREELKGLTFEQLQKLKEEMGTKLFNKKVFNSKSPSSXXXXXXXXXXXXXXXXXX 67
E+ +R++ ++FE+L +L+ ++GTK + K++ S
Sbjct: 23 EDSGGLRKDTSDMSFEELLELQSQVGTKTY-KRLVAGNSSKKEGSRPRVQNACVADKHRP 81
Query: 68 XXISSKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDDIR 122
+S+K+ + F +Q V+P+ K + RDPRFD L G + + F Y+F++DIR
Sbjct: 82 LEMSAKV-RVPFLRQ---VVPISKKVARDPRFDDLSGEYNPEVFDKTYEFLNDIR 132
>TAIR|locus:2195082 [details] [associations]
symbol:AT1G12650 "AT1G12650" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0051604 "protein maturation" evidence=RCA]
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006364
KO:K14795 InterPro:IPR009292 PANTHER:PTHR21738 Pfam:PF06102
eggNOG:NOG265749 HOGENOM:HOG000243254 EMBL:AF446361 EMBL:AY101527
IPI:IPI00540029 RefSeq:NP_001031031.1 RefSeq:NP_001077524.1
RefSeq:NP_001077525.1 RefSeq:NP_172725.2 UniGene:At.28455
IntAct:Q8W1E4 PaxDb:Q8W1E4 PRIDE:Q8W1E4 EnsemblPlants:AT1G12650.1
EnsemblPlants:AT1G12650.2 EnsemblPlants:AT1G12650.3
EnsemblPlants:AT1G12650.4 GeneID:837821 KEGG:ath:AT1G12650
TAIR:At1g12650 InParanoid:Q8W1E4 OMA:SKIVFED PhylomeDB:Q8W1E4
ProtClustDB:CLSN2690399 Genevestigator:Q8W1E4 Uniprot:Q8W1E4
Length = 248
Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 55/221 (24%), Positives = 92/221 (41%)
Query: 15 EELKGLTFEQLQKLKEEMGTKLFNKKVFNSKSPSSXXXXXXXXXXXXXXXXXXXXISSKI 74
E K LTFE++ KL+ + G+K K K +SSK
Sbjct: 38 ETEKELTFEEIHKLRAD-GSKAVPWKPNQVKKTGRARANKNRPME----------VSSKK 86
Query: 75 PQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDDIRXXXXXXXXXXXX 134
P ++ + V+ V K RDPRF+ L GT + F Y F + +
Sbjct: 87 PVSRYRE----VVHVPKKEVRDPRFNQLGGTLDVEGFRKRYNFFFEDKLPVEREELKKKL 142
Query: 135 XXXXXXXXXXXXYLVQRMENQMR--EAKQRHEKDQQEK-----EEHTARI-QALKHGEKP 186
+ ++NQ+ E ++E Q K EH + +A K G++P
Sbjct: 143 KKTKNPEE------IDELKNQLTYVEKMLKYEPSTQNKGAAILTEHKKKEREAAKEGKRP 196
Query: 187 LFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKE 227
+ KKSE L++K+ +LK++GK+ +++K+ K K+
Sbjct: 197 YYLKKSEIRKQTLIEKYNSLKESGKLTSYLDKRRKKNATKD 237
>ASPGD|ASPL0000005620 [details] [associations]
symbol:AN6561 species:162425 "Emericella nidulans"
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000469 "cleavage involved in rRNA processing" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
GO:GO:0005730 EMBL:BN001301 GO:GO:0030529 EMBL:AACD01000109
GO:GO:0006364 KO:K14795 InterPro:IPR009292 PANTHER:PTHR21738
Pfam:PF06102 eggNOG:NOG265749 RefSeq:XP_664165.1 STRING:Q5AYR9
EnsemblFungi:CADANIAT00007335 GeneID:2870329 KEGG:ani:AN6561.2
HOGENOM:HOG000201208 OMA:MSYYFKN OrthoDB:EOG4STWF3 Uniprot:Q5AYR9
Length = 352
Score = 130 (50.8 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 43/166 (25%), Positives = 72/166 (43%)
Query: 74 IPQKKFAQQSAPVIPVQKNIP--RDPRFDSLC----GTFKEKAFHSAYKFIDDIRXXXXX 127
+ K+A I ++P RDPRFD G A AY F+DD R
Sbjct: 166 VQSSKYAVSRKRTIIEPPSVPKSRDPRFDPTIVGGRGGSGSSAPSDAYAFLDDYRAAELR 225
Query: 128 XXXXXXXXXXXXXXXXXXXYLVQRMENQMREAKQRHEKDQQEKEEHTARI-QALKHGEK- 185
++ M +++R + H+++++ EH R Q ++ G+K
Sbjct: 226 ALKEQLAKTKDVRRREALQREIRSMTDRLRTI-ENHKREKEILSEHKKREKQLIREGKKA 284
Query: 186 -PLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKERSQ 230
P F KKS+ L++K+E +K + K +E++ K AKER +
Sbjct: 285 TPYFLKKSDIKKQALLKKYEGMKSKDRA-KALERRRKKAAAKERKE 329
>POMBASE|SPAC823.04 [details] [associations]
symbol:SPAC823.04 "rRNA processing protein Rrp36, DUF947
family (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0000469 "cleavage involved in rRNA processing" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0030686
"90S preribosome" evidence=ISO] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=ISO] EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0030686 GO:GO:0000462 GO:GO:0000469
InterPro:IPR009292 PANTHER:PTHR21738 Pfam:PF06102 eggNOG:NOG265749
OrthoDB:EOG4STWF3 RefSeq:NP_593831.3 STRING:Q9P6P2
EnsemblFungi:SPAC823.04.1 GeneID:2543403 NextBio:20804418
Uniprot:Q9P6P2
Length = 265
Score = 115 (45.5 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 32/135 (23%), Positives = 64/135 (47%)
Query: 98 RFDSLCGTFKEKAFHSAYKFIDDIRXXXXXXXXXXXXXXXXXXXXXXXXYLVQRMENQMR 157
+FDSL G + Y F+++ R ++ + ++M
Sbjct: 120 KFDSLSGNLSKDKVKKNYGFLNEYRVSEIQQLRDELKICKDQERAESIRQTLKSLLSKM- 178
Query: 158 EAKQRH-EKDQQEKEEHTARIQA---LKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKIN 213
+RH E+++ E+ H R Q +K G+KP + K++E+ L + K+++++ T ++
Sbjct: 179 ---ERHLEEERAERVMHEFRAQEKERVKEGKKPFYLKRNEQKKLIQMDKYKSMEGTKALD 235
Query: 214 KHIEKKTKALKAKER 228
K+IEKK + KE+
Sbjct: 236 KYIEKKRRRRAQKEK 250
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.128 0.345 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 235 191 0.00094 110 3 11 23 0.37 33
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 551 (59 KB)
Total size of DFA: 136 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 22.15u 0.08s 22.23t Elapsed: 00:00:07
Total cpu time: 22.16u 0.08s 22.24t Elapsed: 00:00:12
Start: Thu Aug 15 11:10:05 2013 End: Thu Aug 15 11:10:17 2013