RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14443
(235 letters)
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 89.3 bits (222), Expect = 2e-22
Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 60 KRENKNRPREISSKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFID 119
KR++K+ P E+SSK P + + +K RDPRFDSL G F YKF+D
Sbjct: 1 KRKSKHAPMELSSKKPVSRKRDI--IEVEKKKPKVRDPRFDSLSGKLNLDKFRKNYKFLD 58
Query: 120 DIREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHTARIQA 179
D REKEI L+K LKK K+ EEKE++K +Q M+++++ K + + + KE +
Sbjct: 59 DYREKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKEL 118
Query: 180 LKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKER 228
+K G+KP + KKSE L L +KF+ LKK+ +++K +EKK K KE+
Sbjct: 119 IKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEK 167
>gnl|CDD|237953 PRK15378, PRK15378, inositol phosphate phosphatase SopB;
Provisional.
Length = 564
Score = 31.8 bits (72), Expect = 0.29
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 135 KEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHTARIQALKH--GEKPLFRKKS 192
+ P+ E V L +++++ +H KD E + R+ L + P + KS
Sbjct: 408 LAQYPDNYEVVNTLARQIKDIW--KNNQHHKDGGEPYKLAQRLAMLAYEIDAVPAWNCKS 465
Query: 193 EKT---MLNLVQKFETLKK--TGKINKHIEKKTK 221
K M++ K E + TG ++ +
Sbjct: 466 GKDRTGMMDSEIKREIISLHQTGMLSAPGSLPSS 499
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.3 bits (72), Expect = 0.43
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 140 EEKEKVKYLVQRMENQMREAKQRHE--KDQQEKEEHTARIQALKHGEKPLFRKKSEKTML 197
++ + L + +E + + ++ + ++ EKE A +A K ++ + + +
Sbjct: 541 ALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGG 600
Query: 198 NLVQKFETLK-KTGKINKHIEKKTKALKAKERSQHN 232
K L ++NK EKK K K ++ Q
Sbjct: 601 YASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
Score = 29.0 bits (66), Expect = 2.7
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 140 EEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHTARIQALKHGEKPLFRKKSEKTMLNL 199
E+KEK+ L+ +E RE +Q+ E+ + +E + L+ +K +++ +K +
Sbjct: 513 EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEE-KKEKLQEEEDKLLEEA 571
Query: 200 VQKFETLKKTGKINKHIEKKTKALKAKERSQH 231
++ + K K K ++ K L+ ++ +
Sbjct: 572 EKEAQQAIKEAK--KEADEIIKELRQLQKGGY 601
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 31.3 bits (72), Expect = 0.49
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 115 YKFIDDIREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHT 174
K I + + KE K++ +E E + K + + ++ + + EK+ +E+
Sbjct: 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE- 83
Query: 175 ARIQALKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKERS 229
L+ EK L +K+ NL +K E L+K + +EKK K L+ K++
Sbjct: 84 -----LQKLEKRLLQKEE-----NLDRKLELLEKR---EEELEKKEKELEQKQQE 125
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 30.4 bits (69), Expect = 0.78
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 149 VQRMENQMREAKQRHEKDQQEKEEHTARIQALKHGEKPLFRKKSEKTMLNLVQKFETLKK 208
++RM ++EA+ E+D++ KEE AR A ++EKT+ K +K
Sbjct: 503 IERM---VKEAEANAEEDKKRKEEIEARNNADS------LAYQAEKTLKEAGDKLPAEEK 553
Query: 209 TGKINKHIEKKTKALKAK 226
KI K + + +ALK +
Sbjct: 554 E-KIEKAVAELKEALKGE 570
>gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional.
Length = 341
Score = 29.4 bits (66), Expect = 1.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 1 MESSDIDEERVAIREELKGLTFEQLQKLKEEMGTKL 36
ME +D+ + I E K ++ E L K E+ G +L
Sbjct: 150 MEITDVVDAVNKILENSKEVSLEGLSKASEKAGDEL 185
>gnl|CDD|148701 pfam07246, Phlebovirus_NSM, Phlebovirus nonstructural protein NS-M.
This family consists of several Phlebovirus
nonstructural NS-M proteins which represent the
N-terminal region of the M polyprotein precursor. The
function of this family is unknown.
Length = 264
Score = 29.5 bits (65), Expect = 1.5
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Query: 117 FIDDIREKEISILKKKLKKEKNPEEKEKVKYL-VQRMENQMREAKQRHEKDQQEKEEHTA 175
FI +I E S K +KN EEK+ + ME R HE Q++ E
Sbjct: 128 FIRNITTGEQSPRVDYEKLKKNAEEKDATIQRKTKEMEEDSRNQIAHHEIQQKKNEIQKL 187
Query: 176 RIQALKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAK 226
R + E + + E++M + E LK+ +H + + ++L+ K
Sbjct: 188 RNDLKRGQEHRDAKLRVEESMARVKGLKEELKQLTDELQHAKSEMQSLRKK 238
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 29.1 bits (65), Expect = 2.1
Identities = 15/80 (18%), Positives = 30/80 (37%)
Query: 115 YKFIDDIREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHT 174
+ F +D+ E+E + + K L ++ R ++ EK +KE
Sbjct: 754 FCFNEDLEEEEFEYPRMYEEASGKSVRKVNTAVLSTTIKAAARAKQKPKEKGPNDKEIKI 813
Query: 175 ARIQALKHGEKPLFRKKSEK 194
GE+ +++ EK
Sbjct: 814 ESPSVETEGERCTIKQREEK 833
>gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.
Length = 423
Score = 29.0 bits (66), Expect = 2.2
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 115 YKFIDDIREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQM-----REAKQRHEKDQQE 169
+ ++IRE+E+ KKL ++ E E ++ L + + N++ K+ E+ E
Sbjct: 349 REQAEEIREEELERALKKLGPGEDEE--EVLEKLARSLVNKLLHAPTVRLKEAAEEGDDE 406
Query: 170 KEE 172
E
Sbjct: 407 YLE 409
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 28.5 bits (64), Expect = 2.6
Identities = 8/38 (21%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 150 QRMENQMREAKQRHEKDQQEKEEHTARIQALKHGEKPL 187
Q ++ Q++ ++++ D+Q+ ++Q +HG P+
Sbjct: 62 QELQPQIKALQKKYGNDRQKMALEMQKLQK-EHGFNPI 98
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 28.7 bits (64), Expect = 2.9
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 136 EKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKE-EHTARIQALKHGEKPLFRKKSEK 194
E E+K + ++R + + +AK++ K + + E A++QA + + KKSEK
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEK 64
>gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional.
Length = 250
Score = 28.2 bits (63), Expect = 3.1
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 150 QRMENQMREAKQRHEKDQQEKEEHTARIQALKHGEKPLFRKKSEK 194
QR+ N+ ++A+QR ++ QE E + + Q+L+ + E
Sbjct: 39 QRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEA 83
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 28.5 bits (64), Expect = 3.4
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 107 KEKAFHSAYKFIDDIREKEISILKKKLKKEKNPEEKEKVKYLVQRME-NQMREAKQRHEK 165
+E+ + ++DI + K+KL+K K+ +EK K K + + + M + K + K
Sbjct: 239 EEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAK-KLGISIILFDDMTKNKTTNYK 297
Query: 166 DQQEKEEHTARI 177
Q E + I
Sbjct: 298 IQNEDPDFITSI 309
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 28.5 bits (64), Expect = 3.5
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 166 DQQEKEEHTARIQALKHGEKPLFR-------KKSEKTMLNLVQKFETL 206
D E E+ R+ L+HG+K F K +EKT L Q F TL
Sbjct: 481 DSAEAEQQLTRLLTLRHGKKDFFTWNMDSVLKTAEKTTRTL-QLFLTL 527
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 28.6 bits (63), Expect = 3.5
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 122 REKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMR--EAKQRHEKDQQEKEEHTARIQA 179
E E + K + ++K E K+K ++ E + + EAK++ E+D+++ +E A
Sbjct: 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416
Query: 180 LKHGEKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKERSQ 230
K ++ + + +K +K E KK + K E+ KA +AK++++
Sbjct: 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE 1467
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 28.5 bits (64), Expect = 4.2
Identities = 26/169 (15%), Positives = 63/169 (37%), Gaps = 28/169 (16%)
Query: 31 EMGTKLFNK-----------KVFNSKSPSSKFKEHENKN---FKRENKNRPREISSKIPQ 76
E GTK FN +FN+ + E + + +RP+E+ +I +
Sbjct: 754 EEGTKKFNILLQEIAYDVIVSLFNNPNAEKILIITEILSDGINNSDINDRPQELIDQIIE 813
Query: 77 KKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFIDDIREKEISIL------K 130
+ + A I ++ + R + + ++ + +I+E E I
Sbjct: 814 SEEERLKALRIQREEMLMRPEELELI-NEEQKNLKQEIKLELSEIQEAEEEIQNINENKN 872
Query: 131 KKLKKEKNPE-------EKEKVKYLVQRMENQMREAKQRHEKDQQEKEE 172
+ ++ + +P+ K+ + LV + ++ K +K + ++
Sbjct: 873 EFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKT 921
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 28.0 bits (62), Expect = 4.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 148 LVQRMENQMREAKQRHEKDQQEKEEH 173
+V ++E +R+ Q H K+ +E E H
Sbjct: 3 VVSKIEEALRKNGQTHTKNAREMENH 28
>gnl|CDD|233242 TIGR01035, hemA, glutamyl-tRNA reductase. This enzyme, together
with glutamate-1-semialdehyde-2,1-aminomutase
(TIGR00713), leads to the production of
delta-amino-levulinic acid from Glu-tRNA [Biosynthesis
of cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 417
Score = 27.7 bits (62), Expect = 5.3
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 115 YKFIDDIREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHT 174
+ +REKE+ KKL + + +E ++ L +++ N++ A K +KEE
Sbjct: 346 RSLAEIVREKELEKALKKL-PGLSKDVEEVLEDLARKLINKLLHAPTVRLKQLADKEESE 404
Query: 175 ARIQALK 181
++ALK
Sbjct: 405 VCLEALK 411
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 28.0 bits (63), Expect = 5.4
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 119 DDIREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHTARIQ 178
K+I + +K +K++ E+KEK K + + +E ++ EK+++E+E+ +
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKK---KAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461
Query: 179 ALKHGEKPLFRKKSEKT 195
A + E+ +KK + T
Sbjct: 462 AEEEKEEEEEKKKKQAT 478
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 27.3 bits (60), Expect = 5.8
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 60 KRENKNRPREISSKIPQKKFAQQSAPVIPVQKNIPRDPRFDSLCGTFKEKAFHSAYKFID 119
KR ++P I S K A+ SA V P +P + ++F + +
Sbjct: 119 KRVPCSQPVSILSPN-TLKEAEPSAEVQPTTMTLPIAEHPTIT----ENQSFQPWPERLH 173
Query: 120 DIREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEE 172
+ E+ + + K K + L+ +++ ++E K ++ Q+E+EE
Sbjct: 174 NNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEE 226
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 27.5 bits (62), Expect = 6.2
Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 134 KKEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHTARIQALKHGEKPLF 188
+ E E +++ ++++E ++R+ + +EK ++E E + ++ LK PL
Sbjct: 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK--SPPLI 54
>gnl|CDD|188618 cd09898, H3TH_53EXO, H3TH domain of the 5'-3' exonuclease of Taq
DNA polymerase I and homologs. H3TH
(helix-3-turn-helix) domains of the 5'-3' exonuclease
(53EXO) of mutli-domain DNA polymerase I and single
domain protein homologs are included in this family. Taq
DNA polymerase I contains a polymerase domain for
synthesizing a new DNA strand and a 53EXO domain for
cleaving RNA primers or damaged DNA strands. Taq's 53EXO
recognizes and endonucleolytically cleaves a
structure-specific DNA substrate that has a bifurcated
downstream duplex and an upstream template-primer duplex
that overlaps the downstream duplex by 1 bp. The 53EXO
cleaves the unpaired 5'-arm of the overlap flap DNA
substrate. 5'-3' exonucleases are members of the
structure-specific, 5' nuclease family that catalyzes
hydrolysis of DNA duplex-containing nucleic acid
structures during DNA replication, repair, and
recombination. These nucleases contain a PIN (PilT N
terminus) domain with a helical arch/clamp region/I
domain (not included here) and inserted within the PIN
domain is an atypical helix-hairpin-helix-2 (HhH2)-like
region. This atypical HhH2 region, the H3TH domain, has
an extended loop with at least three turns between the
first two helices, and only three of the four helices
appear to be conserved. Both the H3TH domain and the
helical arch/clamp region are involved in DNA binding.
Studies suggest that a glycine-rich loop in the H3TH
domain contacts the phosphate backbone of the template
strand in the downstream DNA duplex. The nucleases
within this family have a carboxylate rich active site
that is involved in binding essential divalent metal ion
cofactors (i. e., Mg2+ or Mn2+ or Zn2+) required for
nuclease activity. The first metal binding site is
composed entirely of Asp/Glu residues from the PIN
domain, whereas, the second metal binding site is
composed generally of two Asp residues from the PIN
domain and two Asp residues from the H3TH domain.
Together with the helical arch and network of amino
acids interacting with metal binding ions, the H3TH
region defines a positively charged active-site
DNA-binding groove in structure-specific 5' nucleases.
Length = 73
Score = 25.8 bits (58), Expect = 6.2
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 193 EKTMLNLVQKFETLKKTGKINKHIEKKTKALKAK 226
KT L+Q++ +L+ I ++++ L+ K
Sbjct: 26 PKTAAKLLQEYGSLE---NILANLDELKGKLREK 56
>gnl|CDD|222689 pfam14335, DUF4391, Domain of unknown function (DUF4391). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 220 and
257 amino acids in length.
Length = 221
Score = 27.2 bits (61), Expect = 6.2
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 123 EKEISILKKKLKKEKNPEEK 142
EKEI+ LKKKLKKEK K
Sbjct: 188 EKEIAKLKKKLKKEKQFNRK 207
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 27.5 bits (62), Expect = 7.0
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 118 IDDIREKEISILKKKLKKEKNPEE-KEKVKYLVQRMENQM 156
DD + E+ L++K++K K P+E KEK + ++++E
Sbjct: 244 EDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMS 283
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 27.5 bits (61), Expect = 7.3
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 125 EISILKKKLKKEKNPEEKEKVKYLVQRMENQMREA-KQRHEKDQQEKEEHTARIQALKHG 183
E + +KK EKN E K + K + Q+ RE ++ ++ AR A+K
Sbjct: 328 ENAEIKKTRTAEKN-EAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAK 386
Query: 184 EKPLFRKKSEKTMLNLVQKFETLKKTGKINKHIEKKTKALKAKERSQ 230
+K L +++ +E T A +E SQ
Sbjct: 387 KKGL------IDASPNEDTPSENEESKGSPPQVEATTTAEPNREPSQ 427
>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 581
Score = 27.3 bits (61), Expect = 7.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 9 ERVAIREELKGLTFEQLQKLKEEMGTKLFNK 39
E++ +LK L+ ++L++L E+ T L K
Sbjct: 4 EKINSPADLKKLSLDELEQLASEIRTALLEK 34
>gnl|CDD|233791 TIGR02231, TIGR02231, conserved hypothetical protein. This family
consists of proteins over 500 amino acids long in
Caenorhabditis elegans and several bacteria (Pseudomonas
aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans,
etc.). The function is unknown.
Length = 525
Score = 27.4 bits (61), Expect = 8.0
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 116 KFIDDIREKEISILKKKLKKEKNPEEKEK-----VKYLVQRMENQMREAKQRHEKDQQEK 170
KF++DIRE +K K+ + ++ ++R+ + REA++R + +++
Sbjct: 102 KFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQL 161
Query: 171 EEHTARIQALKHGEKPLFRK 190
E + AL G+
Sbjct: 162 SELQNELNALLTGKSQRSHT 181
>gnl|CDD|216312 pfam01125, G10, G10 protein.
Length = 145
Score = 26.5 bits (59), Expect = 8.5
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 131 KKLKKEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHTARIQALKH 182
+ + +K PE +K++ + E +MR+A + + + K+E I + H
Sbjct: 5 RTSRTKKPPEGFDKIEPTLDEFEAKMRDA-ENEPHEGKRKKELLWPIFRIHH 55
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 27.0 bits (59), Expect = 8.8
Identities = 21/65 (32%), Positives = 42/65 (64%), Gaps = 8/65 (12%)
Query: 119 DDIREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAK----QRHEKDQQEKEEHT 174
DDI++K+ I++++ + EK +E+E+++ +RME + RE K + E+ ++E+EE T
Sbjct: 113 DDIKKKKSLIIRQE-QIEKARQEREELE---ERMEWERREEKIDEREDQEEQEREREEQT 168
Query: 175 ARIQA 179
Q+
Sbjct: 169 IEEQS 173
>gnl|CDD|181462 PRK08537, PRK08537, 2-oxoglutarate ferredoxin oxidoreductase
subunit gamma; Validated.
Length = 177
Score = 26.6 bits (59), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 112 HSAY-KFIDDIREKEISILKKKLKKEKNPEEKEKVKY 147
AY K++DD++E I+ L + E ++KVK
Sbjct: 76 QEAYDKYLDDLKEGGTVIVDPDLVPIREIEYEKKVKV 112
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 27.3 bits (61), Expect = 9.9
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 126 ISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHTARIQALKHGEK 185
KKLK+ EE+E+ + ++ + KQ QE + E
Sbjct: 219 SPFFTKKLKETSETEEREEETDVEIETTSETKGTKQE-----QEGSTEEDPSLFSEEKED 273
Query: 186 PLFRKKSEKTMLNLVQKFETL 206
P + +K + +K E L
Sbjct: 274 PDKTEDLDKLEILKEKKDEEL 294
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.127 0.339
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,744,732
Number of extensions: 1114036
Number of successful extensions: 2951
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2611
Number of HSP's successfully gapped: 484
Length of query: 235
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 141
Effective length of database: 6,768,326
Effective search space: 954333966
Effective search space used: 954333966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.8 bits)