RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14443
         (235 letters)



>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 32.4 bits (73), Expect = 0.044
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 12/54 (22%)

Query: 115 YKFIDDIRE------------KEISILKKKLKKEKNPEEKEKVKYLVQRMENQM 156
             FI DIR             KE++ ++ K K +K  +   K KY+ + +   +
Sbjct: 6   AVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFL 59


>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 126

 Score = 27.5 bits (61), Expect = 0.83
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 109 KAFHSAYKFIDDIREKEISILKKKLKKEKNPE 140
           K+  +  K  +  R +E+++LK+KL +  + E
Sbjct: 92  KSMRNLVKKYEPPRSEEVAVLKQKLDRCHSAE 123


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 27.4 bits (60), Expect = 1.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 116 KFIDDIREKEISILKKKLKKEKNPEEKEKVKYLVQRM 152
           K+    ++ EI  LK +L  EK  + KE VK ++  M
Sbjct: 2   KYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAM 38


>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
           SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 129

 Score = 25.5 bits (56), Expect = 4.0
 Identities = 8/60 (13%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 121 IREKEISILKKKLKKEKNPEEKEKVKYLVQRMENQMREAKQRHEKDQQEKEEHTARIQAL 180
           ++ ++I+ L   L       E E+++ +   ++ ++ E +    +  ++KE+    + ++
Sbjct: 67  LKTRQINKLIDSLPGVDVSAE-EQLRKI-DMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 124


>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 330

 Score = 25.8 bits (56), Expect = 4.7
 Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 99  FDSLCGTFKEKAFHSAYKFIDDIREKEISILKKKLKKEKNPEEKEKVKYLVQR 151
            DS+  +      +   +FI      EI+   +  + ++    ++ V+ LV++
Sbjct: 51  LDSVISSLLA---NPTRRFIYV----EIAFFSRWWR-QQTNATQKIVRELVRQ 95


>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
           and 4 {Archaeon Methanobacterium thermoautotrophicum
           [TaxId: 145262]}
          Length = 128

 Score = 24.7 bits (54), Expect = 6.7
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 101 SLCGTFKEKAFHSAYKFIDDIREKEISILKKKLKKEKNPEEKEKVKYLVQ 150
           ++      K  H       DI E    ILK++L  +   EE + +  + +
Sbjct: 71  AIKDAVYGKTIHEGDTLYVDIPENHYHILKEQLSGDLTDEELDLMDKIAE 120


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.127    0.339 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 834,552
Number of extensions: 40769
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 80
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.9 bits)