BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14444
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CAR|A Chain A, Crystal Structure Of Human Inosine Triphosphatase
pdb|2CAR|B Chain B, Crystal Structure Of Human Inosine Triphosphatase
pdb|2J4E|A Chain A, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|B Chain B, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|C Chain C, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|D Chain D, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|E Chain E, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|F Chain F, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|G Chain G, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|H Chain H, The Itp Complex Of Human Inosine Triphosphatase
Length = 196
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 117/166 (70%), Gaps = 11/166 (6%)
Query: 165 DELPIQTVYLKFSIGTYE---------KHKRAIKAINDRVIVEDTCLCFNALGGLPGPYV 215
D+ P V K + Y+ K + A++ + V+VEDTCLCFNALGGLPGPY+
Sbjct: 31 DKFPCTLVAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALGGLPGPYI 90
Query: 216 KWFLKKIGPAGLHKMLAGFEDKSAIAVCTFAF--GDRDGSVRLFRGETHGKIVEPRGPDT 273
KWFL+K+ P GLH++LAGFEDKSA A+CTFA GD VRLFRG T G+IV PRG
Sbjct: 91 KWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRTSGRIVAPRGCQD 150
Query: 274 FGWDSCFQPDGFEQTYAEMLKEQKNQISHRNKAVLKLQDFFVKMNA 319
FGWD CFQPDG+EQTYAEM K +KN +SHR +A+L+LQ++F + A
Sbjct: 151 FGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGSLAA 196
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 88/118 (74%), Gaps = 2/118 (1%)
Query: 314 FVKMNATESPYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAF--GDRDGSVRLFRGET 371
F + PY+KWFL+K+ P GL+++LAGFEDKSA A+CTFA GD VRLFRG T
Sbjct: 79 FNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRT 138
Query: 372 HGKIVEPRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFFVKMNA 429
G+IV PRG FGWD CFQPDG++QTYAEMPK +KN +SHR +A+L+LQ++F + A
Sbjct: 139 SGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGSLAA 196
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 3 MIHQDIDLPELQGEIDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPG 53
++ Q IDLPE QGE D++ +KC+ A++ + V+VEDTCLCFNALGGLPG
Sbjct: 37 LVAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALGGLPG 87
>pdb|2I5D|A Chain A, Crystal Structure Of Human Inosine Triphosphate
Pyrophosphatase
Length = 197
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 117/166 (70%), Gaps = 11/166 (6%)
Query: 165 DELPIQTVYLKFSIGTYE---------KHKRAIKAINDRVIVEDTCLCFNALGGLPGPYV 215
D+ P V K + Y+ K + A++ + V+VEDTCLCFNALGGLPGPY+
Sbjct: 32 DKFPCTLVAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALGGLPGPYI 91
Query: 216 KWFLKKIGPAGLHKMLAGFEDKSAIAVCTFAF--GDRDGSVRLFRGETHGKIVEPRGPDT 273
KWFL+K+ P GLH++LAGFEDKSA A+CTFA GD VRLFRG T G+IV PRG
Sbjct: 92 KWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRTSGRIVAPRGCQD 151
Query: 274 FGWDSCFQPDGFEQTYAEMLKEQKNQISHRNKAVLKLQDFFVKMNA 319
FGWD CFQPDG+EQTYAEM K +KN +SHR +A+L+LQ++F + A
Sbjct: 152 FGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGSLAA 197
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 88/118 (74%), Gaps = 2/118 (1%)
Query: 314 FVKMNATESPYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAF--GDRDGSVRLFRGET 371
F + PY+KWFL+K+ P GL+++LAGFEDKSA A+CTFA GD VRLFRG T
Sbjct: 80 FNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRT 139
Query: 372 HGKIVEPRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFFVKMNA 429
G+IV PRG FGWD CFQPDG++QTYAEMPK +KN +SHR +A+L+LQ++F + A
Sbjct: 140 SGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGSLAA 197
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 3 MIHQDIDLPELQGEIDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPG 53
++ Q IDLPE QGE D++ +KC+ A++ + V+VEDTCLCFNALGGLPG
Sbjct: 38 LVAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALGGLPG 88
>pdb|2MJP|A Chain A, Structure-Based Identification Of The Biochemical Function
Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226
pdb|2MJP|B Chain B, Structure-Based Identification Of The Biochemical Function
Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226
pdb|1B78|A Chain A, Structure-Based Identification Of The Biochemical Function
Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226
pdb|1B78|B Chain B, Structure-Based Identification Of The Biochemical Function
Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226
Length = 193
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 195 VIVEDTCLCFNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAIAVCTFAFGDRDGSV 254
VIVED+ AL G PG Y K+ + IG G+ K+L G ++++A + D +G V
Sbjct: 69 VIVEDSGFFVEALNGFPGTYSKFVQETIGNEGILKLLEGKDNRNAYFKTVIGYCDENG-V 127
Query: 255 RLFRGETHGKIVEPRGPDTFG--WDSCFQPDGFEQTYAEMLKEQKNQISHRNKAVLKLQD 312
RLF+G G++ E +G +DS F P+ E+T+AEM E+K+QISHR KA + +
Sbjct: 128 RLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEEEERTFAEMTTEEKSQISHRKKAFEEFKK 187
Query: 313 FFV 315
F +
Sbjct: 188 FLL 190
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 306 AVLKLQDFFVK-MNATESPYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAFGDRDGSV 364
+++ FFV+ +N Y K+ + +G G+ K+L G ++++A + D +G V
Sbjct: 69 VIVEDSGFFVEALNGFPGTYSKFVQETIGNEGILKLLEGKDNRNAYFKTVIGYCDENG-V 127
Query: 365 RLFRGETHGKIVEPRGPDTFG--WDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQD 422
RLF+G G++ E +G +DS F P+ ++T+AEM E+K++ISHR KA + +
Sbjct: 128 RLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEEEERTFAEMTTEEKSQISHRKKAFEEFKK 187
Query: 423 FFV 425
F +
Sbjct: 188 FLL 190
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 8 IDLPELQGEIDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPG 53
I PE+QG +++V + ++ VIVED+ AL G PG
Sbjct: 41 ISYPEIQGTLEEVAEFGAKWVYNILKKPVIVEDSGFFVEALNGFPG 86
>pdb|1V7R|A Chain A, Structure Of Nucleotide Triphosphate Pyrophosphatase From
Pyrococcus Horikoshii Ot3
pdb|2DVN|A Chain A, Structure Of Ph1917 Protein With The Complex Of Imp From
Pyrococcus Horikoshii
pdb|2DVN|B Chain B, Structure Of Ph1917 Protein With The Complex Of Imp From
Pyrococcus Horikoshii
pdb|2DVO|A Chain A, Structure Of Ph1917 Protein With The Complex Of Itp From
Pyrococcus Horikoshii
pdb|2DVP|A Chain A, Structure Of Ntpase From Pyroccous Horikoshii
pdb|2ZTI|A Chain A, Structures Of Dimeric Nonstandard Nucleotide Triphosphate
Pyrophosphatase From Pyrococcus Horikoshii Ot3:
Functional Significance Of Interprotomer Conformational
Changes
Length = 186
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 191 INDRVIVEDTCLCFNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAIAVCTFAFGDR 250
+ + ++ED+ L +L G PG Y + + IG G+ K++ G ED+ A F
Sbjct: 57 VPEPFMIEDSGLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGF-YI 115
Query: 251 DGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISHRNKAVLK 309
DG F G T G+I E RG FG+D F P+G E+T+AEM E+KN +SHR KA
Sbjct: 116 DGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKA--- 172
Query: 310 LQDFF 314
L+ FF
Sbjct: 173 LKAFF 177
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 9/112 (8%)
Query: 324 YVKWFLKKVGPTGLYKMLAGFEDKSA--KAICTFAFGDRDGSVRLFRGETHGKIV-EPRG 380
Y + + +G G+ K++ G ED+ A K++ F DG F G T G+I E RG
Sbjct: 80 YSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYI---DGKAYKFSGVTWGRISNEKRG 136
Query: 381 PDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFFVKMNANLR 432
FG+D F P+G ++T+AEM E+KN +SHR KA L+ FF + NL+
Sbjct: 137 THGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKA---LKAFFEWLKVNLK 185
>pdb|2E5X|A Chain A, Structure Of Nucleotide Triphosphate Pyrophosphatase From
Pyrococcus Horikoshii Ot3
Length = 186
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 191 INDRVIVEDTCLCFNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAIAVCTFAFGDR 250
+ + ++ED+ L +L G PG Y + + IG G+ K++ G ED+ A F
Sbjct: 57 VPEPFMIEDSGLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGF-YI 115
Query: 251 DGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISHRNKAVLK 309
DG F G T G+I E RG FG+D F P+G ++T+AEM E+KN +SHR KA
Sbjct: 116 DGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSQKTFAEMTIEEKNALSHRGKA--- 172
Query: 310 LQDFF 314
L+ FF
Sbjct: 173 LKAFF 177
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 9/112 (8%)
Query: 324 YVKWFLKKVGPTGLYKMLAGFEDKSA--KAICTFAFGDRDGSVRLFRGETHGKIV-EPRG 380
Y + + +G G+ K++ G ED+ A K++ F DG F G T G+I E RG
Sbjct: 80 YSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYI---DGKAYKFSGVTWGRISNEKRG 136
Query: 381 PDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFFVKMNANLR 432
FG+D F P+G ++T+AEM E+KN +SHR KA L+ FF + NL+
Sbjct: 137 THGFGYDPIFIPEGSQKTFAEMTIEEKNALSHRGKA---LKAFFEWLKVNLK 185
>pdb|1VP2|A Chain A, Crystal Structure Of A Putative Xanthosine Triphosphate
PyrophosphataseHAM1 PROTEIN HOMOLOG (TM0159) FROM
THERMOTOGA Maritima At 1.78 A Resolution
pdb|1VP2|B Chain B, Crystal Structure Of A Putative Xanthosine Triphosphate
PyrophosphataseHAM1 PROTEIN HOMOLOG (TM0159) FROM
THERMOTOGA Maritima At 1.78 A Resolution
pdb|3S86|A Chain A, Crystal Structure Of Tm0159 With Bound Imp
pdb|3S86|B Chain B, Crystal Structure Of Tm0159 With Bound Imp
pdb|3S86|C Chain C, Crystal Structure Of Tm0159 With Bound Imp
pdb|3S86|D Chain D, Crystal Structure Of Tm0159 With Bound Imp
Length = 208
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 8/140 (5%)
Query: 189 KAINDRVIVEDTCLCFNALGGLPGPYVKWFLK----KIGPAGLHKMLAGFEDKSAIAVCT 244
K + V+ +D+ L +LGG PG F++ K + KML G +D+ A VC+
Sbjct: 70 KKLKHPVMADDSGLVIYSLGGFPGVMSARFMEEHSYKEKMRTILKMLEG-KDRRAAFVCS 128
Query: 245 FAFGDR-DGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISH 302
F D + ++ G+I E RG FG+D F PDG+++T+ E + K +ISH
Sbjct: 129 ATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGE-IPHLKEKISH 187
Query: 303 RNKAVLKLQDFFVKMNATES 322
R+KA KL K+ +E+
Sbjct: 188 RSKAFRKLFSVLEKILESEN 207
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 337 LYKMLAGFEDKSAKAICTFAFGDR-DGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDG 394
+ KML G +D+ A +C+ F D + ++ G+I E RG FG+D F PDG
Sbjct: 112 ILKMLEG-KDRRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDG 170
Query: 395 FKQTYAEMPKEQKNRISHRNKAVLKL 420
+ +T+ E+P K +ISHR+KA KL
Sbjct: 171 YDKTFGEIP-HLKEKISHRSKAFRKL 195
>pdb|3TQU|A Chain A, Structure Of A Ham1 Protein From Coxiella Burnetii
pdb|3TQU|B Chain B, Structure Of A Ham1 Protein From Coxiella Burnetii
pdb|3TQU|C Chain C, Structure Of A Ham1 Protein From Coxiella Burnetii
pdb|3TQU|D Chain D, Structure Of A Ham1 Protein From Coxiella Burnetii
Length = 203
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 183 KHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLKKIGPAG--LHKMLAGFE----- 235
K + A K + +D+ L AL PG + + K + K+L E
Sbjct: 56 KARHAAKQTGLPALADDSGLTIAALNSAPGVFSSRYAGKNATDAERIQKVLEALEAADDS 115
Query: 236 DKSAIAVCTFAF--GDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEM 292
D+SA C A + D + + G G+I EPRG + FG+D F ++T AE+
Sbjct: 116 DRSASFHCVIALXENENDPAPLICHGVWEGEIAREPRGKNGFGYDPIFYVPSHQRTAAEL 175
Query: 293 LKEQKNQISHRNKAVLKLQDFFVK 316
++KN ISHR +A+ +L +
Sbjct: 176 DPQEKNAISHRGQALEQLSTVLTE 199
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 300 ISHRNKAVLKLQDFFVKMNATESPYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAF-- 357
I+ N A + NAT++ ++ L+ + A D+SA C A
Sbjct: 77 IAALNSAPGVFSSRYAGKNATDAERIQKVLEAL-------EAADDSDRSASFHCVIALXE 129
Query: 358 GDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKA 416
+ D + + G G+I EPRG + FG+D F ++T AE+ ++KN ISHR +A
Sbjct: 130 NENDPAPLICHGVWEGEIAREPRGKNGFGYDPIFYVPSHQRTAAELDPQEKNAISHRGQA 189
Query: 417 VLKLQDFFVK 426
+ +L +
Sbjct: 190 LEQLSTVLTE 199
>pdb|1K7K|A Chain A, Crystal Structure Of Rdgb- Inosine Triphosphate
Pyrophosphatase From E. Coli
Length = 221
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 183 KHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLKK--IGPAGLHKMLAGFED---- 236
K + A K I +D+ L + LGG PG Y + + L K+L +D
Sbjct: 75 KARHAAKVTALPAIADDSGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETXKDVPDD 134
Query: 237 -KSAIAVCTFAF--GDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEM 292
+ A C + D + + G G I EP G FG+D F +T AE+
Sbjct: 135 QRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAEL 194
Query: 293 LKEQKNQISHRNKAVLKLQD 312
+E+K+ ISHR +A+ L D
Sbjct: 195 TREEKSAISHRGQALKLLLD 214
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 377 EPRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQD 422
EP G FG+D F +T AE+ +E+K+ ISHR +A+ L D
Sbjct: 169 EPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLLLD 214
>pdb|2PYU|A Chain A, Structure Of The E. Coli Inosine Triphosphate
Pyrophosphatase Rgdb In Complex With Imp
Length = 219
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 10/142 (7%)
Query: 183 KHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLKK--IGPAGLHKMLAGFED---- 236
K + A K I + + L + LGG PG Y + + L K+L +D
Sbjct: 73 KARHAAKVTALPAIADASGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDD 132
Query: 237 -KSAIAVCTFAF--GDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEM 292
+ A C + D + + G G I EP G FG+D F +T AE+
Sbjct: 133 QRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAEL 192
Query: 293 LKEQKNQISHRNKAVLKLQDFF 314
+E+K+ ISHR +A+ L D
Sbjct: 193 TREEKSAISHRGQALKLLLDAL 214
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 377 EPRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFF 424
EP G FG+D F +T AE+ +E+K+ ISHR +A+ L D
Sbjct: 167 EPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLLLDAL 214
>pdb|2Q16|A Chain A, Structure Of The E. Coli Inosine Triphosphate
Pyrophosphatase Rgdb In Complex With Itp
pdb|2Q16|B Chain B, Structure Of The E. Coli Inosine Triphosphate
Pyrophosphatase Rgdb In Complex With Itp
Length = 219
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 10/142 (7%)
Query: 183 KHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLKK--IGPAGLHKMLAGFED---- 236
K + A K I + + L + LGG PG Y + + L K+L +D
Sbjct: 73 KARHAAKVTALPAIADASGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETXKDVPDD 132
Query: 237 -KSAIAVCTFAF--GDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEM 292
+ A C + D + + G G I EP G FG+D F +T AE+
Sbjct: 133 QRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAEL 192
Query: 293 LKEQKNQISHRNKAVLKLQDFF 314
+E+K+ ISHR +A+ L D
Sbjct: 193 TREEKSAISHRGQALKLLLDAL 214
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 377 EPRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFF 424
EP G FG+D F +T AE+ +E+K+ ISHR +A+ L D
Sbjct: 167 EPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLLLDAL 214
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 204 FNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAI 240
NA+ GLPG ++K ++K GPA LAG ED+ I
Sbjct: 24 LNAIRGLPGSFIKE-VQKGGPAD----LAGLEDEDVI 55
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 204 FNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAI 240
NA+ GLPG ++K ++K GPA LAG ED+ I
Sbjct: 20 LNAIRGLPGSFIKE-VQKGGPAD----LAGLEDEDVI 51
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 204 FNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAI 240
NA+ GLPG ++K ++K GPA LAG ED+ I
Sbjct: 20 LNAIRGLPGSFIKE-VQKGGPAD----LAGLEDEDVI 51
>pdb|2HWZ|L Chain L, Fab Fragment Of Humanized Anti-viral Antibody Medi-493
(synagis Tm)
Length = 213
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 24/105 (22%)
Query: 190 AINDRVIVEDTCLCFNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAIAVCTFAFGD 249
++ DRV + TC C ++G Y+ W+ +K G A K+L D S +A
Sbjct: 14 SVGDRVTI--TCKCQLSVG-----YMHWYQQKPGKA--PKLL--IYDTSKLA-------- 54
Query: 250 RDGSVRLFRGETHGK----IVEPRGPDTFGWDSCFQPDGFEQTYA 290
G F G G + PD F CFQ G+ T+
Sbjct: 55 -SGVPSRFSGSGSGTAFTLTISSLQPDDFATYYCFQGSGYPFTFG 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,525,475
Number of Sequences: 62578
Number of extensions: 575818
Number of successful extensions: 1214
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1172
Number of HSP's gapped (non-prelim): 33
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)