RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14444
(441 letters)
>gnl|CDD|216665 pfam01725, Ham1p_like, Ham1 family. This family consists of the
HAM1 protein and hypothetical archaeal bacterial and C.
elegans proteins. HAM1 controls 6-N-hydroxylaminopurine
(HAP) sensitivity and mutagenesis in S. cerevisiae
inosine triphosphate pyrophosphatase. The HAM1 protein
protects the cell from HAP, either on the level of
deoxynucleoside triphosphate or the DNA level by a yet
unidentified set of reactions.
Length = 181
Score = 183 bits (468), Expect = 2e-56
Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Query: 181 YEKHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAI 240
K K A KA+ V+ +D+ LC +AL G PG Y F + L ++L G ED+SA
Sbjct: 47 LLKAKAAAKALGKPVLADDSGLCVDALNGFPGVYSARFADTLNNEKLLELLEGVEDRSAY 106
Query: 241 AVCTFAFGDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQ 299
VC A D DG V +F G G+I EPRG FG+D F P G+ +T+AEM +E+KN+
Sbjct: 107 FVCVIALADPDGKVLVFEGIVEGEISEEPRGEGGFGYDPIFIPPGYGKTFAEMSEEEKNK 166
Query: 300 ISHRNKAVLKLQDFF 314
ISHR KA+ KL++F
Sbjct: 167 ISHRGKALRKLKEFL 181
Score = 145 bits (369), Expect = 9e-42
Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 323 PYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAFGDRDGSVRLFRGETHGKIV-EPRGP 381
Y F + L ++L G ED+SA +C A D DG V +F G G+I EPRG
Sbjct: 79 VYSARFADTLNNEKLLELLEGVEDRSAYFVCVIALADPDGKVLVFEGIVEGEISEEPRGE 138
Query: 382 DTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFF 424
FG+D F P G+ +T+AEM +E+KN+ISHR KA+ KL++F
Sbjct: 139 GGFGYDPIFIPPGYGKTFAEMSEEEKNKISHRGKALRKLKEFL 181
Score = 57.9 bits (141), Expect = 5e-10
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 3 MIHQDIDLPELQGEIDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPG 53
+ H I++ E ++ K + A K + V+ +D+ LC +AL G PG
Sbjct: 28 LKHFPIEVEETGDTFEENALLKAKAAAKALGKPVLADDSGLCVDALNGFPG 78
>gnl|CDD|238285 cd00515, HAM1, NTPase/HAM1. This family consists of the HAM1
protein and pyrophosphate-releasing xanthosine/ inosine
triphosphatase. HAM1 protects the cell against
mutagenesis by the base analog 6-N-hydroxylaminopurine
(HAP) in E. Coli and S. cerevisiae. A Ham1-related
protein from Methanococcus jannaschii is a novel NTPase
that has been shown to hydrolyze nonstandard nucleotides
such as XTP to XMP and ITP to IMP, but not the standard
nucleotides, in the presence of Mg or Mn ions. The
enzyme exists as a homodimer. The HAM1 protein may be
acting as an NTPase by hydrolyzing the HAP triphosphate.
Length = 183
Score = 170 bits (434), Expect = 3e-51
Identities = 69/168 (41%), Positives = 91/168 (54%), Gaps = 16/168 (9%)
Query: 162 EIEDELPIQTVYLKFSI------GTYE-----KHKRAIKAINDRVIVEDTCLCFNALGGL 210
EI I+ V LK I T+E K + A +A+ V+ +D+ LC +AL G
Sbjct: 16 EILAPFGIEVVSLKDIIDIEETGSTFEENALLKARAAAEALGLPVLADDSGLCVDALNGF 75
Query: 211 PGPYVKWFLK----KIGPAGLHKMLAGFEDKSAIAVCTFAFGDRDGSVRLFRGETHGKIV 266
PG Y F L ++L G ED+SA VC A D DG +F GE GKIV
Sbjct: 76 PGVYSARFAGEHDDAENNEKLLELLEGDEDRSAYFVCVIALVDPDGEPLVFEGEVEGKIV 135
Query: 267 -EPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISHRNKAVLKLQDF 313
EPRG FG+D F P+G+ +T+AEM E+KN ISHR KA+ KL++F
Sbjct: 136 TEPRGTGGFGYDPIFIPEGYGKTFAEMSPEEKNAISHRGKALRKLKEF 183
Score = 134 bits (340), Expect = 2e-37
Identities = 47/106 (44%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Query: 323 PYVKWFLK----KVGPTGLYKMLAGFEDKSAKAICTFAFGDRDGSVRLFRGETHGKIV-E 377
Y F L ++L G ED+SA +C A D DG +F GE GKIV E
Sbjct: 78 VYSARFAGEHDDAENNEKLLELLEGDEDRSAYFVCVIALVDPDGEPLVFEGEVEGKIVTE 137
Query: 378 PRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDF 423
PRG FG+D F P+G+ +T+AEM E+KN ISHR KA+ KL++F
Sbjct: 138 PRGTGGFGYDPIFIPEGYGKTFAEMSPEEKNAISHRGKALRKLKEF 183
Score = 57.1 bits (139), Expect = 1e-09
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 2 LMIHQDIDLPELQGEIDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPG 53
+ + ID+ E ++ K A + + V+ +D+ LC +AL G PG
Sbjct: 26 VSLKDIIDIEETGSTFEENALLKARAAAEALGLPVLADDSGLCVDALNGFPG 77
>gnl|CDD|223205 COG0127, COG0127, Xanthosine triphosphate pyrophosphatase
[Nucleotide transport and metabolism].
Length = 194
Score = 150 bits (382), Expect = 1e-43
Identities = 56/139 (40%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 181 YEKHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFL----KKIGPAGLHKMLAGFED 236
K + A KA VI +D+ LC +AL G PG Y F IG L K+L G D
Sbjct: 52 LLKARAAAKATGLPVIADDSGLCVDALNGFPGVYSARFAGEADDTIGNEKLLKLLEGVPD 111
Query: 237 KSAIAVCTFAFGDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKE 295
+SA VC G +F GE G+I EPRG FG+D F P+G+ +T+AE+ E
Sbjct: 112 RSAYFVCVIVLARDGGEPIVFEGEVEGEIAREPRGEGGFGYDPIFIPEGYGKTFAELSTE 171
Query: 296 QKNQISHRNKAVLKLQDFF 314
+KN ISHR +A+ KL+++
Sbjct: 172 EKNAISHRARALKKLKEYL 190
Score = 119 bits (301), Expect = 9e-32
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 323 PYVKWFL----KKVGPTGLYKMLAGFEDKSAKAICTFAFGDRDGSVRLFRGETHGKIV-E 377
Y F +G L K+L G D+SA +C G +F GE G+I E
Sbjct: 84 VYSARFAGEADDTIGNEKLLKLLEGVPDRSAYFVCVIVLARDGGEPIVFEGEVEGEIARE 143
Query: 378 PRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFF 424
PRG FG+D F P+G+ +T+AE+ E+KN ISHR +A+ KL+++
Sbjct: 144 PRGEGGFGYDPIFIPEGYGKTFAELSTEEKNAISHRARALKKLKEYL 190
Score = 39.1 bits (92), Expect = 0.002
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 7 DIDLPELQGEIDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPGQ---------AFT 57
+I++ E ++ K A K VI +D+ LC +AL G PG T
Sbjct: 37 EIEVEETGLTFEENALLKARAAAKATGLPVIADDSGLCVDALNGFPGVYSARFAGEADDT 96
Query: 58 KANKTLLRV 66
N+ LL++
Sbjct: 97 IGNEKLLKL 105
>gnl|CDD|232795 TIGR00042, TIGR00042, non-canonical purine NTP pyrophosphatase,
RdgB/HAM1 family. Saccharomyces cerevisiae HAM1
protects against the mutagenic effects of the base
analog 6-N-hydroxylaminopurine, which can be a natural
product of monooxygenase activity on adenine.
Methanococcus jannaschii MJ0226 and E. coli RdgB are
also characterized as pyrophosphatases active against
non-standard purines NTPs. E. coli RdgB appears to act
by intercepting non-canonical deoxyribonucleotide
triphosphates from replication precursor pools. [DNA
metabolism, DNA replication, recombination, and repair].
Length = 184
Score = 135 bits (343), Expect = 6e-38
Identities = 53/134 (39%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 183 KHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLKKI--GPAGLHKMLAGFEDKSAI 240
K K A K +N VI ED+ L +AL G PG Y + + K+L G E++ A
Sbjct: 49 KAKHAAKILNKPVIAEDSGLFVDALNGFPGIYSARYQGTDIGNLEKILKLLEGVENRQAY 108
Query: 241 AVCTFAFGDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQ 299
VC + D +G +F G GKI EPRG FG+D F P +T+AE+ E+KN+
Sbjct: 109 FVCVIGYCDPNGEPLVFEGIVKGKITREPRGTYGFGYDPIFIPPEEGKTFAELTTEEKNK 168
Query: 300 ISHRNKAVLKLQDF 313
ISHR KA K + F
Sbjct: 169 ISHRGKAFKKFKKF 182
Score = 104 bits (262), Expect = 2e-26
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 323 PYVKWFLKKV--GPTGLYKMLAGFEDKSAKAICTFAFGDRDGSVRLFRGETHGKIV-EPR 379
Y + + K+L G E++ A +C + D +G +F G GKI EPR
Sbjct: 79 IYSARYQGTDIGNLEKILKLLEGVENRQAYFVCVIGYCDPNGEPLVFEGIVKGKITREPR 138
Query: 380 GPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDF 423
G FG+D F P +T+AE+ E+KN+ISHR KA K + F
Sbjct: 139 GTYGFGYDPIFIPPEEGKTFAELTTEEKNKISHRGKAFKKFKKF 182
Score = 44.7 bits (106), Expect = 2e-05
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 2 LMIHQDIDLPELQGE-IDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPG 53
+ D+ PE G ++ K + A K++N VI ED+ L +AL G PG
Sbjct: 26 EIEQLDLGYPEETGLTFEENALLKAKHAAKILNKPVIAEDSGLFVDALNGFPG 78
>gnl|CDD|184834 PRK14821, PRK14821, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 184
Score = 113 bits (284), Expect = 1e-29
Identities = 54/130 (41%), Positives = 73/130 (56%), Gaps = 12/130 (9%)
Query: 191 INDRVIVEDTCLCFNALGGLPGPYVKWFLKKIGPAGLHKMLAGFED-----KSAIAVCTF 245
+N VIVED+ L AL G PGPY + K +G G+ K+L G E+ KS I C
Sbjct: 57 LNRPVIVEDSGLFIEALNGFPGPYSAFVYKTLGNEGILKLLEGEENRRAYFKSVIGYCD- 115
Query: 246 AFGDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISHRN 304
G +LF G GKI E RG FG+D F P+G E+T+AEM E+KN+ISHR
Sbjct: 116 -----PGGEKLFTGIVEGKIANEIRGKGGFGYDPIFIPEGEEKTFAEMTTEEKNKISHRK 170
Query: 305 KAVLKLQDFF 314
+A + +++
Sbjct: 171 RAFDEFKEWL 180
Score = 90.0 bits (224), Expect = 4e-21
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 313 FFV-KMNATESPYVKWFLKKVGPTGLYKMLAGFEDKSA--KAICTFAFGDRDGSVRLFRG 369
F+ +N PY + K +G G+ K+L G E++ A K++ + G +LF G
Sbjct: 68 LFIEALNGFPGPYSAFVYKTLGNEGILKLLEGEENRRAYFKSVIGYC---DPGGEKLFTG 124
Query: 370 ETHGKIV-EPRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFF 424
GKI E RG FG+D F P+G ++T+AEM E+KN+ISHR +A + +++
Sbjct: 125 IVEGKIANEIRGKGGFGYDPIFIPEGEEKTFAEMTTEEKNKISHRKRAFDEFKEWL 180
Score = 31.1 bits (71), Expect = 0.79
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 4 IHQDIDLPELQ-GEIDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPG 53
I+ PE+Q +++V + +N VIVED+ L AL G PG
Sbjct: 28 EQIKIEYPEIQADTLEEVAAFGAKWVYNKLNRPVIVEDSGLFIEALNGFPG 78
>gnl|CDD|234648 PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.
Length = 196
Score = 90.1 bits (225), Expect = 4e-21
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 22/133 (16%)
Query: 195 VIVEDTCLCFNALGGLPGPY-VKWFLKKIGPAGLH--------KMLA-----GFEDKSAI 240
+ +D+ LC +ALGG PG Y ++ AG K+L ED+ A
Sbjct: 64 ALADDSGLCVDALGGAPGVYSARY-------AGEGASDAANNEKLLEELKGVPDEDRRAR 116
Query: 241 AVCTFAFGDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQ 299
VC D + + G G+I+ EPRG + FG+D F P G+ +T+AE+ E+KN
Sbjct: 117 FVCVLVLVRPDPTPLVAEGRWEGEILWEPRGENGFGYDPIFFPPGYGKTFAELTPEEKNA 176
Query: 300 ISHRNKAVLKLQD 312
ISHR KA+ L +
Sbjct: 177 ISHRGKALKLLLE 189
Score = 85.5 bits (213), Expect = 2e-19
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 343 GFEDKSAKAICTFAFGDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFKQTYAE 401
ED+ A+ +C D + + G G+I+ EPRG + FG+D F P G+ +T+AE
Sbjct: 109 PDEDRRARFVCVLVLVRPDPTPLVAEGRWEGEILWEPRGENGFGYDPIFFPPGYGKTFAE 168
Query: 402 MPKEQKNRISHRNKAVLKLQD 422
+ E+KN ISHR KA+ L +
Sbjct: 169 LTPEEKNAISHRGKALKLLLE 189
>gnl|CDD|184835 PRK14822, PRK14822, nucleoside-triphosphatase; Provisional.
Length = 200
Score = 83.8 bits (208), Expect = 9e-19
Identities = 51/148 (34%), Positives = 69/148 (46%), Gaps = 20/148 (13%)
Query: 181 YEKHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLKKIGPAGLHK----------- 229
K + A KA+N VI +D+ L +AL G PG Y + AG K
Sbjct: 52 ILKAEAAAKALNKPVIADDSGLEVDALNGAPGVYSARY------AGEAKDDAANNEKLLK 105
Query: 230 MLAG--FEDKSAIAVCTFAFGDRDGSVRLFRGETHGKIVE-PRGPDTFGWDSCFQPDGFE 286
L G FE ++A C A G + G G+I+E PRG + FG+D F
Sbjct: 106 ELGGVPFEKRTARFHCVIAVAFPGGETKTVEGTCEGEILEEPRGENGFGYDPLFYVPEKG 165
Query: 287 QTYAEMLKEQKNQISHRNKAVLKLQDFF 314
+T AE+ E+KN ISHR KA+ KL+
Sbjct: 166 KTMAELSSEEKNAISHRGKALKKLEAEL 193
Score = 77.2 bits (191), Expect = 2e-16
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 337 LYKMLAG--FEDKSAKAICTFAFGDRDGSVRLFRGETHGKIVE-PRGPDTFGWDSCFQPD 393
L K L G FE ++A+ C A G + G G+I+E PRG + FG+D F
Sbjct: 103 LLKELGGVPFEKRTARFHCVIAVAFPGGETKTVEGTCEGEILEEPRGENGFGYDPLFYVP 162
Query: 394 GFKQTYAEMPKEQKNRISHRNKAVLKLQDFF 424
+T AE+ E+KN ISHR KA+ KL+
Sbjct: 163 EKGKTMAELSSEEKNAISHRGKALKKLEAEL 193
Score = 28.7 bits (65), Expect = 4.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 23 KKCERAIKVINDRVIVEDTCLCFNALGGLPG 53
K E A K +N VI +D+ L +AL G PG
Sbjct: 53 LKAEAAAKALNKPVIADDSGLEVDALNGAPG 83
>gnl|CDD|237823 PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase;
Provisional.
Length = 191
Score = 81.7 bits (202), Expect = 5e-18
Identities = 50/130 (38%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Query: 198 EDTCLCFNALGGLPGPYVKWFL--KKIGPAGLHKMLAGFED--------KSAIAVCTFAF 247
+DT L AL G PG Y + + A + K+L E ++ IA+
Sbjct: 67 DDTGLEVEALNGAPGVYSARYAGGEHNAEANMRKLLEELEGKDNRKAQFRTVIAL----- 121
Query: 248 GDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISHRNKA 306
DG LF G G+I+ E RG FG+D F P+G+++T+AE+ E KNQISHR KA
Sbjct: 122 -ILDGKEHLFEGIIKGEIIKEKRGDSGFGYDPIFVPEGYDKTFAELGLEIKNQISHRAKA 180
Query: 307 VLKLQDFFVK 316
V KL DF K
Sbjct: 181 VQKLIDFLSK 190
Score = 75.9 bits (187), Expect = 5e-16
Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 361 DGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLK 419
DG LF G G+I+ E RG FG+D F P+G+ +T+AE+ E KN+ISHR KAV K
Sbjct: 124 DGKEHLFEGIIKGEIIKEKRGDSGFGYDPIFVPEGYDKTFAELGLEIKNQISHRAKAVQK 183
Query: 420 LQDFFVK 426
L DF K
Sbjct: 184 LIDFLSK 190
>gnl|CDD|237824 PRK14824, PRK14824, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 201
Score = 69.8 bits (171), Expect = 8e-14
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 337 LYKMLAGFEDKSAKAICTFAFGDRDGSVRLF-RGETHGKIV-EPRGPDTFGWDSCFQPDG 394
L ++L G +++ A+ + G ++ GE GKI EPRG FG+D F P+G
Sbjct: 108 LLRLLEGKQNRKARFVAFVVL--YFGDWGIWTEGECRGKIAEEPRGSGGFGYDPVFIPEG 165
Query: 395 FKQTYAEMPKEQKNRISHRNKAVLKL 420
+ +T AE+ E+KN+ISHR KAV KL
Sbjct: 166 YNKTMAELSPEEKNKISHRGKAVRKL 191
Score = 69.4 bits (170), Expect = 8e-14
Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 24/135 (17%)
Query: 195 VIVEDTCLCFNALGGLPGPYVKWFLKKIGPAG---------------LHKMLAGFEDKSA 239
V+ +D+ L AL G PG Y F + I G L ++L G +++ A
Sbjct: 62 VLADDSGLEVPALEGYPGVYSSRFYQ-IEFGGKEEVVESKDEANIRKLLRLLEGKQNRKA 120
Query: 240 --IAVCTFAFGDRDGSVRLF-RGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKE 295
+A FGD ++ GE GKI EPRG FG+D F P+G+ +T AE+ E
Sbjct: 121 RFVAFVVLYFGD----WGIWTEGECRGKIAEEPRGSGGFGYDPVFIPEGYNKTMAELSPE 176
Query: 296 QKNQISHRNKAVLKL 310
+KN+ISHR KAV KL
Sbjct: 177 EKNKISHRGKAVRKL 191
>gnl|CDD|238485 cd00985, Maf_Ham1, Maf_Ham1. Maf, a nucleotide binding protein, has
been implicated in inhibition of septum formation in
eukaryotes, bacteria and archaea. A Ham1-related protein
from Methanococcus jannaschii is a novel NTPase that has
been shown to hydrolyze nonstandard nucleotides, such as
hypoxanthine/xanthine NTP, but not standard nucleotides.
Length = 131
Score = 62.9 bits (154), Expect = 4e-12
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 181 YEKHKRAIKAINDR-VIVEDTCLCFNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSA 239
K + + + D VI +DT L + G PG F A +ML G ++A
Sbjct: 47 LLKARAVAERLPDAPVIADDTGLVVD---GRPGGKPARF------AEALEMLRGLSGRTA 97
Query: 240 IAVCTFAFGDRDGSVRLFRGETHGKI 265
V A D DG + F GET GKI
Sbjct: 98 EFVTAVALVDPDGKIITFEGETEGKI 123
Score = 38.6 bits (91), Expect = 0.001
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 338 YKMLAGFEDKSAKAICTFAFGDRDGSVRLFRGETHGKI 375
+ML G ++A+ + A D DG + F GET GKI
Sbjct: 86 LEMLRGLSGRTAEFVTAVALVDPDGKIITFEGETEGKI 123
Score = 32.1 bits (74), Expect = 0.20
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 4 IHQDIDLPELQGEIDDVCT------KKCERAIKVINDR-VIVEDTCLCFNALGGLPG 53
D+ E + + T K + + D VI +DT L + G PG
Sbjct: 23 EVLPSDIDETGLKGEPEDTVEELALLKARAVAERLPDAPVIADDTGLVVD---GRPG 76
>gnl|CDD|173287 PRK14826, PRK14826, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 222
Score = 59.3 bits (144), Expect = 4e-10
Identities = 44/134 (32%), Positives = 59/134 (44%), Gaps = 23/134 (17%)
Query: 196 IVEDTCLCFNALGGLPGPYVKWFLKKIGPAG------------LHKMLAGFEDKSAIAVC 243
+ +DT L +ALGG PG Y F P G L +M G ++SA
Sbjct: 81 LADDTGLEVDALGGAPGVYSARFAPV--PEGEKPTYEDNVRHLLSEM-EGKTERSARFRT 137
Query: 244 TFAFGDR----DGSVRLFR---GETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKE 295
A R +G+ G G I E +G FG+D F+ + +T+AEM E
Sbjct: 138 VIALKGRLPGKNGAFEFEETAEGVVEGSITTEKKGDGGFGYDPIFRVEATGKTFAEMSTE 197
Query: 296 QKNQISHRNKAVLK 309
+KN ISHR AV K
Sbjct: 198 EKNTISHRALAVQK 211
Score = 57.8 bits (140), Expect = 1e-09
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 369 GETHGKIV-EPRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLK 419
G G I E +G FG+D F+ + +T+AEM E+KN ISHR AV K
Sbjct: 160 GVVEGSITTEKKGDGGFGYDPIFRVEATGKTFAEMSTEEKNTISHRALAVQK 211
>gnl|CDD|179431 PRK02491, PRK02491, putative deoxyribonucleotide triphosphate
pyrophosphatase/unknown domain fusion protein; Reviewed.
Length = 328
Score = 60.2 bits (146), Expect = 6e-10
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 195 VIVEDTCLCFNALGGLPGPYVKWFLKKIGPAG---------LHKMLAGFE--DKSAIAVC 243
V+ +D+ L +ALGGLPG W + GP LH++ F+ D+SA
Sbjct: 192 VLADDSGLKVDALGGLPG---VWSARFSGPDATDAENNAKLLHELAMVFDLKDRSAQFHT 248
Query: 244 TFAFGDRDGSVRLFRGETHGKI-VEPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISH 302
T + + + G I EP+G + FG+D F + AE+ E+KNQ+SH
Sbjct: 249 TLVVAAPNKDSLVVEADWPGYIATEPKGENGFGYDPLFLVGETGRHAAELTAEEKNQLSH 308
Query: 303 RNKAVLKLQDFF 314
R +AV KL + F
Sbjct: 309 RGQAVKKLMEVF 320
Score = 47.5 bits (113), Expect = 6e-06
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 340 MLAGFEDKSAKAICTFAFGDRDGSVRLFRGETHGKI-VEPRGPDTFGWDSCFQPDGFKQT 398
M+ +D+SA+ T + + + G I EP+G + FG+D F +
Sbjct: 235 MVFDLKDRSAQFHTTLVVAAPNKDSLVVEADWPGYIATEPKGENGFGYDPLFLVGETGRH 294
Query: 399 YAEMPKEQKNRISHRNKAVLKLQDFF 424
AE+ E+KN++SHR +AV KL + F
Sbjct: 295 AAELTAEEKNQLSHRGQAVKKLMEVF 320
>gnl|CDD|173286 PRK14825, PRK14825, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 199
Score = 52.2 bits (125), Expect = 7e-08
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 15/172 (8%)
Query: 159 LKFEIEDELPIQTVYLKFSIGTYEKHKRAIKAINDR--VIVEDTCLCFNALGGLPGPYVK 216
+K EI I+ F + K K + +N++ V ED+ LC AL PG Y K
Sbjct: 26 IKIEIPQNFDIKETGKTFKENSLLKAKALFEILNNKQPVFSEDSGLCIEALNLEPGIYSK 85
Query: 217 WF-----LKKIGPAGLHKMLAGF----EDKSAIAVCTFAFGDRDGSVRLFRGETHGKI-- 265
+ KK+ + ++ ++++A +C ++ +DG++ F G G I
Sbjct: 86 RYDQYKLGKKLSTNEKNHLIIDLMKNEKNRTAYFICNISYISKDGTILNFEGIIKGTIAL 145
Query: 266 -VEPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISHRNKAVLKLQDFFVK 316
++ + FG+D F + +E+ E+KN+ISHR A K + F ++
Sbjct: 146 SIDDYKKNGFGYDPIFLTKN-NKRLSELTLEEKNKISHRGIAFDKFKKFLMQ 196
Score = 44.9 bits (106), Expect = 2e-05
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 345 EDKSAKAICTFAFGDRDGSVRLFRGETHGKI---VEPRGPDTFGWDSCFQPDGFKQTYAE 401
++++A IC ++ +DG++ F G G I ++ + FG+D F K+ +E
Sbjct: 113 KNRTAYFICNISYISKDGTILNFEGIIKGTIALSIDDYKKNGFGYDPIFLTKNNKR-LSE 171
Query: 402 MPKEQKNRISHRNKAVLKLQDFFVK 426
+ E+KN+ISHR A K + F ++
Sbjct: 172 LTLEEKNKISHRGIAFDKFKKFLMQ 196
>gnl|CDD|180163 PRK05611, rpmD, 50S ribosomal protein L30; Reviewed.
Length = 59
Score = 28.5 bits (65), Expect = 0.92
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 178 IGTYEKHKRAIKA-----INDRVIVEDT 200
IG K + ++ IN V +EDT
Sbjct: 13 IGRKPKQRATLRGLGLRKINSTVELEDT 40
>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein. This model represents
the DJ-1 clade of the so-called ThiJ/PfpI family of
proteins. PfpI, represented by a distinct model, is a
putative intracellular cysteine protease. DJ-1 is
described as an oncogene that acts cooperatively with
H-Ras. Many members of the DJ-1 clade are annotated
(apparently incorrectly) as ThiJ, a protein of thiamine
biosynthesis. However, published reports of ThiJ
activity and identification of a ThiJ/ThiD bifunctional
protein describe an unrelated locus mapping near ThiM,
rather than the DJ-1 homolog of E. coli. The ThiJ
designation for this family may be spurious; the cited
paper PMID:8885414 refers to a locus near thiD and thiM
in E. coli, unlike the gene represented here. Current
public annotation reflects ThiJ/ThiD bifunctional
activity, apparently a property of ThiD and not of this
locus [Unknown function, General].
Length = 179
Score = 29.6 bits (67), Expect = 2.3
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 24 KCERAIKVINDRVIVEDTCLCFNAL---GGLPGQAFTKANKTLLRVSTSMS 71
K R +K++ D + + F+ + GG+PG + +K LL + S
Sbjct: 43 KGSRGVKILADASLEDVDLEKFDVIVLPGGMPGAENLRNSKLLLNILKSQE 93
>gnl|CDD|193317 pfam12843, DUF3820, Protein of unknown function (DUF3820). This a
bacterial family that is functionally uncharacterized.
Length = 67
Score = 27.0 bits (61), Expect = 3.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 210 LPGPYVKWFLKKIGPAG-LHKMLA 232
LP PY+ WF +K P G L ++LA
Sbjct: 27 LPEPYLVWFARKGFPKGKLGRLLA 50
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 29.0 bits (65), Expect = 6.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 174 LKFSIGTYEKHKRAIKAINDRVIVEDTCL---CFNALGGL 210
++F GT + HK I + EDT L CF+A GGL
Sbjct: 75 VRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGL 114
>gnl|CDD|99848 cd06145, REX1_like, DEDDh 3'-5' exonuclease domain of RNA
exonuclease 1, -3 and similar eukaryotic proteins. This
subfamily is composed of RNA exonuclease 1 (REX1 or
Rex1p), REX3 (or Rex3p), and similar eukaryotic
proteins. In yeast, REX1 and REX3 are required for 5S
rRNA and MRP (mitochondrial RNA processing) RNA
maturation, respectively. They are DEDDh-type DnaQ-like
3'-5' exonucleases containing three conserved sequence
motifs termed ExoI, ExoII and ExoIII, with a specific
Hx(4)D conserved pattern at ExoIII. These motifs are
clustered around the active site and contain four
conserved acidic residues that serve as ligands for the
two metal ions required for catalysis. REX1 is the major
exonuclease responsible for pre-tRNA trail trimming and
may also be involved in nuclear CCA turnover. REX
proteins function in the processing and maturation of
many RNA species, similar to the function of Escherichia
coli RNase T.
Length = 150
Score = 27.8 bits (63), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 27 RAIKVINDRVIVEDTCLCFNALGGLP 52
+A+K+I+ RVI DT + F G P
Sbjct: 89 KALKLIHPRVI--DTAILFPHPRGPP 112
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 28.7 bits (65), Expect = 7.0
Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 32/117 (27%)
Query: 138 LYTWLKLENIVPTLYTSTYTYLKFEIEDELPIQTVYLKFSI--GTYEKHKRAIKAINDRV 195
+ WL L + P T L +EL + T L F + Y+K +A
Sbjct: 205 IQKWLAL-QLAPLASTGLPHVL-----EELLLHTFPLPFFLVKSDYDKLYDFFRASATEA 258
Query: 196 IV---------EDTC------LCFNALGGLPGPYVKWF---LKKIGPAG--LHKMLA 232
+ E+ L FNA GG +F LK +G AG L LA
Sbjct: 259 LDLAEKFGISREEALHNLLFVLGFNAFGGF----KIFFPALLKWVGRAGEELQARLA 311
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.423
Gapped
Lambda K H
0.267 0.0855 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,469,085
Number of extensions: 2178412
Number of successful extensions: 1676
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1645
Number of HSP's successfully gapped: 44
Length of query: 441
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 341
Effective length of database: 6,502,202
Effective search space: 2217250882
Effective search space used: 2217250882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.0 bits)