RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14444
(441 letters)
>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine
triphosphate pyrophosphohydrolase, inosine
triphosphatase deficiency, ITP, IMP; 1.09A {Homo
sapiens} SCOP: c.51.4.1 PDB: 2j4e_A* 2i5d_A
Length = 196
Score = 208 bits (531), Expect = 1e-65
Identities = 88/140 (62%), Positives = 110/140 (78%), Gaps = 2/140 (1%)
Query: 182 EKHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAIA 241
+K + A++ + V+VEDTCLCFNALGGLPGPY+KWFL+K+ P GLH++LAGFEDKSA A
Sbjct: 57 QKCQEAVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYA 116
Query: 242 VCTFAF--GDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQ 299
+CTFA GD VRLFRG T G+IV PRG FGWD CFQPDG+EQTYAEM K +KN
Sbjct: 117 LCTFALSTGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNA 176
Query: 300 ISHRNKAVLKLQDFFVKMNA 319
+SHR +A+L+LQ++F + A
Sbjct: 177 VSHRFRALLELQEYFGSLAA 196
Score = 166 bits (423), Expect = 1e-49
Identities = 68/109 (62%), Positives = 86/109 (78%), Gaps = 2/109 (1%)
Query: 323 PYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAF--GDRDGSVRLFRGETHGKIVEPRG 380
PY+KWFL+K+ P GL+++LAGFEDKSA A+CTFA GD VRLFRG T G+IV PRG
Sbjct: 88 PYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRTSGRIVAPRG 147
Query: 381 PDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFFVKMNA 429
FGWD CFQPDG++QTYAEMPK +KN +SHR +A+L+LQ++F + A
Sbjct: 148 CQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGSLAA 196
Score = 67.9 bits (167), Expect = 2e-13
Identities = 30/50 (60%), Positives = 39/50 (78%)
Query: 4 IHQDIDLPELQGEIDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPG 53
+ Q IDLPE QGE D++ +KC+ A++ + V+VEDTCLCFNALGGLPG
Sbjct: 38 VAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALGGLPG 87
>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken
structural genomics/prote initiative, RSGI, hydrolase;
HET: CIT; 1.40A {Pyrococcus horikoshii} SCOP: c.51.4.1
PDB: 2dvn_A* 2dvo_A* 2dvp_A 2ehk_A 2zti_A 2e5x_A*
Length = 186
Score = 185 bits (472), Expect = 5e-57
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 181 YEKHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAI 240
+ + ++ED+ L +L G PG Y + + IG G+ K++ G ED+ A
Sbjct: 47 DFGISWLKGKVPEPFMIEDSGLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAY 106
Query: 241 AVCTFAFGDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQ 299
F DG F G T G+I E RG FG+D F P+G E+T+AEM E+KN
Sbjct: 107 FKSVIGFYI-DGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNA 165
Query: 300 ISHRNKAVLKLQDFF 314
+SHR KA+ ++
Sbjct: 166 LSHRGKALKAFFEWL 180
Score = 146 bits (371), Expect = 3e-42
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 323 PYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAFGDRDGSVRLFRGETHGKIV-EPRGP 381
Y + + +G G+ K++ G ED+ A F DG F G T G+I E RG
Sbjct: 79 VYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYI-DGKAYKFSGVTWGRISNEKRGT 137
Query: 382 DTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFF 424
FG+D F P+G ++T+AEM E+KN +SHR KA+ ++
Sbjct: 138 HGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKALKAFFEWL 180
Score = 60.5 bits (148), Expect = 5e-11
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 4 IHQDIDLPELQGE-IDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPG 53
+ + PE+Q E ++DV + + ++ED+ L +L G PG
Sbjct: 28 VQLKHEYPEIQAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFIESLKGFPG 78
>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A
{Methanocaldococcus jannaschii} SCOP: c.51.4.1 PDB:
2mjp_A*
Length = 193
Score = 180 bits (459), Expect = 4e-55
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 181 YEKHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAI 240
K + VIVED+ AL G PG Y K+ + IG G+ K+L G ++++A
Sbjct: 55 EFGAKWVYNILKKPVIVEDSGFFVEALNGFPGTYSKFVQETIGNEGILKLLEGKDNRNAY 114
Query: 241 AVCTFAFGDRDGSVRLFRGETHGKIV-EPRGPDT-FGWDSCFQPDGFEQTYAEMLKEQKN 298
+ D +G VRLF+G G++ E R F +DS F P+ E+T+AEM E+K+
Sbjct: 115 FKTVIGYCDENG-VRLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEEEERTFAEMTTEEKS 173
Query: 299 QISHRNKAVLKLQDFFVK 316
QISHR KA + + F +
Sbjct: 174 QISHRKKAFEEFKKFLLD 191
Score = 143 bits (362), Expect = 1e-40
Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 323 PYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAFGDRDGSVRLFRGETHGKIV-EPRGP 381
Y K+ + +G G+ K+L G ++++A + D +G VRLF+G G++ E R
Sbjct: 87 TYSKFVQETIGNEGILKLLEGKDNRNAYFKTVIGYCDENG-VRLFKGIVKGRVSEEIRSK 145
Query: 382 DT-FGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFFVK 426
F +DS F P+ ++T+AEM E+K++ISHR KA + + F +
Sbjct: 146 GYGFAYDSIFIPEEEERTFAEMTTEEKSQISHRKKAFEEFKKFLLD 191
Score = 64.5 bits (158), Expect = 2e-12
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 5 HQDIDLPELQGEIDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPG 53
I PE+QG +++V + ++ VIVED+ AL G PG
Sbjct: 38 QIKISYPEIQGTLEEVAEFGAKWVYNILKKPVIVEDSGFFVEALNGFPG 86
>1vp2_A Putative xanthosine triphosphate pyrophosphatase/ protein homolog;
structural genomics, joint center for structural
genomics, JCSG; 1.78A {Thermotoga maritima} SCOP:
c.51.4.1
Length = 208
Score = 93.0 bits (232), Expect = 4e-22
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 12/148 (8%)
Query: 183 KHKRAIKAINDRVIVEDTCLCFNALGGLPGPY------VKWFLKKIGPAGLHKMLAGFED 236
K K + V+ +D+ L +LGG PG + +K+ + KML G +D
Sbjct: 64 KAVVYGKKLKHPVMADDSGLVIYSLGGFPGVMSARFMEEHSYKEKM--RTILKMLEG-KD 120
Query: 237 KSAIAVCTFAFGD-RDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLK 294
+ A VC+ F D + ++ G+I E RG FG+D F PDG+++T+ E+
Sbjct: 121 RRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGEI-P 179
Query: 295 EQKNQISHRNKAVLKLQDFFVKMNATES 322
K +ISHR+KA KL K+ +E+
Sbjct: 180 HLKEKISHRSKAFRKLFSVLEKILESEN 207
Score = 89.9 bits (224), Expect = 5e-21
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 337 LYKMLAGFEDKSAKAICTFAFGD-RDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDG 394
+ KML G +D+ A +C+ F D + ++ G+I E RG FG+D F PDG
Sbjct: 112 ILKMLEG-KDRRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDG 170
Query: 395 FKQTYAEMPKEQKNRISHRNKAVLKLQDFFVKM 427
+ +T+ E+P K +ISHR+KA KL K+
Sbjct: 171 YDKTFGEIP-HLKEKISHRSKAFRKLFSVLEKI 202
Score = 30.2 bits (69), Expect = 0.91
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 20/77 (25%)
Query: 36 VIVEDTCLCFNALGGLPG---------QAFTKANKTLLRVSTSMSLIFDNLKFTKAT-RY 85
V+ +D+ L +LGG PG ++ + +T+L+ L+ +
Sbjct: 76 VMADDSGLVIYSLGGFPGVMSARFMEEHSYKEKMRTILK----------MLEGKDRRAAF 125
Query: 86 RKVLVIFIPTDEIKHKV 102
F P + V
Sbjct: 126 VCSATFFDPVENTLISV 142
>3tqu_A Non-canonical purine NTP pyrophosphatase; HAM1 protein, hydrolase;
HET: MSE; 1.90A {Coxiella burnetii}
Length = 203
Score = 91.7 bits (229), Expect = 8e-22
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 25/150 (16%)
Query: 186 RAI-KAINDRVIVEDTCLCFNALGGLPGPY-VKWFLKKIGPAGLH--------KMLA--- 232
R K + +D+ L AL PG + ++ AG + K+L
Sbjct: 58 RHAAKQTGLPALADDSGLTIAALNSAPGVFSSRY-------AGKNATDAERIQKVLEALE 110
Query: 233 --GFEDKSA--IAVCTFAFGDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQ 287
D+SA V + D + + G G+I EPRG + FG+D F ++
Sbjct: 111 AADDSDRSASFHCVIALMENENDPAPLICHGVWEGEIAREPRGKNGFGYDPIFYVPSHQR 170
Query: 288 TYAEMLKEQKNQISHRNKAVLKLQDFFVKM 317
T AE+ ++KN ISHR +A+ +L +
Sbjct: 171 TAAELDPQEKNAISHRGQALEQLSTVLTEA 200
Score = 87.5 bits (218), Expect = 3e-20
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 345 EDKSAKAICT--FAFGDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFKQTYAE 401
D+SA C + D + + G G+I EPRG + FG+D F ++T AE
Sbjct: 115 SDRSASFHCVIALMENENDPAPLICHGVWEGEIAREPRGKNGFGYDPIFYVPSHQRTAAE 174
Query: 402 MPKEQKNRISHRNKAVLKLQDFFVKM 427
+ ++KN ISHR +A+ +L +
Sbjct: 175 LDPQEKNAISHRGQALEQLSTVLTEA 200
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered
Se-Met, structural genomics, putative ribosomal protein,
PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1
PDB: 2q16_A* 2pyu_A*
Length = 221
Score = 87.6 bits (218), Expect = 4e-20
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 25/147 (17%)
Query: 186 RAI-KAINDRVIVEDTCLCFNALGGLPGPY-VKWFLKKIGPAGLH--------KMLA--- 232
R K I +D+ L + LGG PG Y ++ +G K+L
Sbjct: 77 RHAAKVTALPAIADDSGLAVDVLGGAPGIYSARY-------SGEDATDQKNLQKLLETMK 129
Query: 233 --GFEDKSAIAVCTFAF--GDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQ 287
+ + A C + D + + G G I EP G FG+D F +
Sbjct: 130 DVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGK 189
Query: 288 TYAEMLKEQKNQISHRNKAVLKLQDFF 314
T AE+ +E+K+ ISHR +A+ L D
Sbjct: 190 TAAELTREEKSAISHRGQALKLLLDAL 216
Score = 83.7 bits (208), Expect = 8e-19
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 345 EDKSAKAICTFAF--GDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFKQTYAE 401
+ + A+ C + D + + G G I EP G FG+D F +T AE
Sbjct: 134 DQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAE 193
Query: 402 MPKEQKNRISHRNKAVLKLQDFF 424
+ +E+K+ ISHR +A+ L D
Sbjct: 194 LTREEKSAISHRGQALKLLLDAL 216
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 3e-08
Identities = 43/332 (12%), Positives = 87/332 (26%), Gaps = 96/332 (28%)
Query: 84 RYRKVLVIFIPT---D-EIKHKVDFLHSLRKKTETQN-HHQFDSTTTIRY---------S 129
+Y+ +L +F + + K D S+ K E + D+ +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 130 NI------GMKNLDLYTWL----KLENIVPTLYTSTYTYLKFEIEDELPIQTVYLKFSIG 179
+ + ++ Y +L K E P++ T Y + + ++ V+ K+++
Sbjct: 77 EMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---VFAKYNV- 131
Query: 180 TYEKHKRAIKAINDRVIVEDTCLCFNALGGL-PGPYVKWFLKKIGPAGLHKMLAGFEDKS 238
+ + ++ AL L P V + + G K+
Sbjct: 132 SRLQPYLKLR---------------QALLELRPAKNV----------LIDGV-LGS-GKT 164
Query: 239 --AIAVCTFAFGDRDGSV-RLFRGETH----GKIVEPRGPDTFGWDSCFQPDGFEQTYAE 291
A+ VC V + P +Q + +
Sbjct: 165 WVALDVC------LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTS 215
Query: 292 MLKEQKNQISHRNKAVLKLQDFFVKMNATESPYVKWFLKKVGPTGLYKMLAGFEDKSAKA 351
N + +L+ PY L +L ++ KA
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLL-----KSKPYENCLL----------VLLNVQNA--KA 258
Query: 352 ICTFAFG------DRDGSVRLFRGETHGKIVE 377
F R V F +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Score = 48.3 bits (114), Expect = 4e-06
Identities = 53/372 (14%), Positives = 106/372 (28%), Gaps = 105/372 (28%)
Query: 17 IDDVCTKK--------CE-----RAIKVIND-------RVIVEDTC----------LCFN 46
+ +V K C+ R +V + + ++ L
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 47 ALG----GLPGQAFTKANKTLLRVSTSMSLIFDNLKFTKAT--RYRKVLVIFIPTDEIKH 100
L LP + N L S+I ++++ AT ++ V D++
Sbjct: 310 YLDCRPQDLPREV-LTTNPRRL------SIIAESIRDGLATWDNWKHVN-----CDKLTT 357
Query: 101 KVD-FLHSLRKKTETQNHHQFDSTTTIRYS-NIGMKNLDLYTWLKL-----ENIVPTLYT 153
++ L+ L + E + FD + S +I L L W + +V L+
Sbjct: 358 IIESSLNVL-EPAEYR--KMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHK 413
Query: 154 ST--------YTYLKFEIEDELPIQTVYLKFSI---GTYEKHKRAIKAINDRVIVEDTCL 202
+ T I +YL+ + Y H+ + N
Sbjct: 414 YSLVEKQPKESTI---SIPS------IYLELKVKLENEYALHRSIVDHYNIPK-----TF 459
Query: 203 CFNALGGLPG-PYVKWF----LKKIGPAGLHKMLAG-FEDKSAIAVCTFAFGDR----DG 252
+ L Y LK I + F D F F ++ D
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--------FRFLEQKIRHDS 511
Query: 253 SVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISHRNKAVLKLQD 312
+ G + + + + D+ + + + L + + +K L+
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP-KIEENLICSKYTDLLR- 569
Query: 313 FFVKMNATESPY 324
M E+ +
Sbjct: 570 -IALMAEDEAIF 580
Score = 42.5 bits (99), Expect = 3e-04
Identities = 57/487 (11%), Positives = 128/487 (26%), Gaps = 123/487 (25%)
Query: 5 HQDIDLPELQGEIDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPGQAFTKAN-KTL 63
H D + E Q + D+ + V D V++ + +P +K +
Sbjct: 6 HMDFETGEHQYQYKDI--------LSVFEDA-FVDN--FDCKDVQDMPKSILSKEEIDHI 54
Query: 64 LRVSTSMS---LIFDNLKFTKATRYRKVLVIFIPTDEIKHKVDFLHSLRKKTETQ----N 116
+ ++S +F L + +K F+ + ++ FL S KTE +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQK----FV-EEVLRINYKFLMS-PIKTEQRQPSMM 108
Query: 117 HHQFDSTTTIRYSNI------GMKNLDLYTWLK--LENIVPTLYTSTY------------ 156
+ Y++ + L Y L+ L + P
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 157 -TYLKFEIEDELPIQTVYLKFSIGTYEKHKRAIKAINDRVIVEDTCLCFNALGGLPGPYV 215
L ++++ ++ + +L ++ + ++ + + D +
Sbjct: 169 DVCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 216 ---------KWFLKKIGPAGL--------HKMLAGFEDKSAIAVCTFAFGDRDGSVRLFR 258
+ K L K F I + T R V F
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-----RFKQVTDFL 281
Query: 259 GETHGKIVEPRGPDTFGWDSCFQPDGFEQTYAE------------MLKEQKNQISHRNKA 306
+ + L + + R +
Sbjct: 282 SAATTTHIS----------LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 307 VL--KLQDFFV-----------KMNATESPYVKWFLKKVGPT---GLYKMLAGFEDK--- 347
++ ++D K+ ++ L + P ++ L+ F
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 348 SAKAICTFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGFKQTYAEMPKEQK 407
+ F V + + H + + P + P Y E+ + +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES---TISIPSI----YLELKVKLE 440
Query: 408 NRIS-HR 413
N + HR
Sbjct: 441 NEYALHR 447
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.003
Identities = 62/435 (14%), Positives = 123/435 (28%), Gaps = 144/435 (33%)
Query: 54 QAFTKANKTLLRVSTSM--SLIFDNLKFTKATRYRKVLVIF-----IPT--DEIKH---- 100
+ + A R S +F + A +++ IF +E++
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNA----QLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 101 ----KVDFLHSLRK--KTETQNHHQFDSTTTIRYSNIGMKNLDLYTWLKLENIVP-TLYT 153
D + + + + ++ + L++ WL+ + P Y
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKV----FT----QGLNILEWLENPSNTPDKDYL 231
Query: 154 STYTYLKFEIEDELPI----QTV-Y------LKFSIGTYEKHKRAIKAINDRVIV----- 197
+ P+ Q Y L F+ G + + + ++
Sbjct: 232 LSIPI-------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 198 -EDTCLCFNALGGLPGPYVKW-FLKKIG------------PAGLHK------------ML 231
D+ F + F IG P + + ML
Sbjct: 285 ETDSWESFFVSVRK---AITVLFF--IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 232 A--GFEDK---SAI-AVCTFAFGDRDGSVRLFRGETHGKIVEPRGP--DTFGWDSCFQ-- 281
+ + + + + + L G + +V GP +G + +
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN-LVVS--GPPQSLYGLNLTLRKA 396
Query: 282 --PDGFEQTYAEMLKEQKNQISHRNKAVLKLQDFFVKMNATE-SPYVKWFLKKVGPTGLY 338
P G +Q+ E+K + S+R F+ + + S L
Sbjct: 397 KAPSGLDQSRIPF-SERKLKFSNR----------FLPVASPFHSHL----LVPASDLINK 441
Query: 339 KMLAGFEDKSAKAI-----CTFAFGDRDGS-VRLFRGETHGKIVEP--RGP-DTFGWDSC 389
++ +AK I TF DGS +R+ G +IV+ R P W++
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTF-----DGSDLRVLSGSISERIVDCIIRLPVK---WETT 493
Query: 390 ----------FQPDG 394
F P G
Sbjct: 494 TQFKATHILDFGPGG 508
Score = 29.2 bits (65), Expect = 3.3
Identities = 43/318 (13%), Positives = 76/318 (23%), Gaps = 124/318 (38%)
Query: 106 HSLRKKTETQNHHQFDSTTTIRYSNIGMKNLDLYTWLKLENIVPTLYTSTYTYLKFEIED 165
+S R T+ + ++ + L VPT + L+ +
Sbjct: 4 YSTR-------------PLTLSHGSLE------HVLL-----VPTASFFIASQLQEQFNK 39
Query: 166 ELPIQTV-----------------YLKFSIGTYEKHKRA-----IKAINDRVIVEDTCLC 203
LP T +L + E K + E+ L
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE--FENCYLE 97
Query: 204 FN----ALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAIAVCTFAFGDRDGSVRLFRG 259
N L +K +++ + +A + F + S LFR
Sbjct: 98 GNDIHALAAKLLQENDTTLVKT------KELIKNY--ITARIMAKRPFDKKSNS-ALFRA 148
Query: 260 ETHGKIVEPRGPDTFGWDSCF--QPDGFEQTYAEMLKEQKNQISHRNKAVLKLQDFFVKM 317
G + F Q G Y +E L+D +
Sbjct: 149 VGEGNA------QLV---AIFGGQ--GNTDDY---FEE--------------LRDLY--- 177
Query: 318 NATESPYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAFGDRDGSVRLFRGETHGKIVE 377
T V + SA+ + D ++F
Sbjct: 178 -QTYHVLVGDLI----------------KFSAETLSELIRTTLDAE-KVF---------- 209
Query: 378 PRGPDTFGW--DSCFQPD 393
+G + W + PD
Sbjct: 210 TQGLNILEWLENPSNTPD 227
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.12
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 14/49 (28%)
Query: 404 KEQKNRISHR------------NKAVLKLQDFFVKMNANLRKN--SNRR 438
+EQ+ R+ KA L+++ + + + KN +NR
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 32.1 bits (73), Expect = 0.41
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 244 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDG 284
A D ++++F+ ET K+++ + + F D
Sbjct: 629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Score = 32.1 bits (73), Expect = 0.41
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 354 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDG 394
A D ++++F+ ET K+++ + + F D
Sbjct: 629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X
1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z
1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W*
3pip_W*
Length = 55
Score = 27.8 bits (63), Expect = 0.87
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 177 SIGTYEKHKRAIKA-----INDRVIVEDT 200
IG + ++A I D V DT
Sbjct: 9 VIGRPGNQVKTVQALGLRKIGDSREVSDT 37
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 30.3 bits (69), Expect = 1.2
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 243 CTFAFGDRDGSVRLFRGETHGKIVEP-RGPDTFGWDSCFQPDG 284
+F + ++ + RG T +C Q +
Sbjct: 91 LRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVI-TCLQFED 132
Score = 30.3 bits (69), Expect = 1.2
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 353 CTFAFGDRDGSVRLFRGETHGKIVEP-RGPDTFGWDSCFQPDG 394
+F + ++ + RG T +C Q +
Sbjct: 91 LRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVI-TCLQFED 132
>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z*
2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y*
2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...
Length = 58
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 177 SIGTYEKHKRAIKA-----INDRVIVEDT 200
+IG KHK + I V EDT
Sbjct: 12 AIGRLPKHKATLLGLGLRRIGHTVEREDT 40
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 29.3 bits (65), Expect = 2.6
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 354 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGFKQTYAEMPKEQK 407
A GD+ G V +F+ E KI + + + + + E+K
Sbjct: 42 LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK 95
Score = 29.0 bits (64), Expect = 3.3
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 244 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCF 280
A GD+ G V +F+ E KI + + +
Sbjct: 42 LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ 78
Score = 29.0 bits (64), Expect = 3.4
Identities = 30/195 (15%), Positives = 51/195 (26%), Gaps = 31/195 (15%)
Query: 244 TFAFGDRDGSVRLF------RGETHGKIVE----PRGPDTFG------WDSCFQPDGFEQ 287
TF + G++RL + H K+ E P F D F G
Sbjct: 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG--- 297
Query: 288 TYAEMLKEQKNQISHRNKAVLKLQDFFV--KMNATESPYVKWFLKKVGPTGLYKMLAGFE 345
+ R+ +K+ D + + T + K + FE
Sbjct: 298 ----------RYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFE 347
Query: 346 DKSAKAICTFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGFKQTYAEMPKE 405
+ G + R+F T I + + +P + E
Sbjct: 348 CCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDE 407
Query: 406 QKNRISHRNKAVLKL 420
NK +L
Sbjct: 408 ISVDSLDFNKKILHT 422
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 28.8 bits (65), Expect = 3.7
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 244 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDG 284
T A DG + + K+ D CF +G
Sbjct: 287 TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327
Score = 28.8 bits (65), Expect = 3.7
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 354 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDG 394
T A DG + + K+ D CF +G
Sbjct: 287 TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 4.3
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 8/28 (28%)
Query: 14 QGEIDDVCTKKCERAIKVINDRVIVEDT 41
+G++ VC C V++D+++ DT
Sbjct: 40 EGDV--VCAL-CGL---VLSDKLV--DT 59
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 28.7 bits (63), Expect = 4.9
Identities = 21/156 (13%), Positives = 41/156 (26%), Gaps = 14/156 (8%)
Query: 241 AVCTFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQI 300
V +F ++G++ + V + D T+
Sbjct: 224 LVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDF--------- 274
Query: 301 SHRNKAVLKLQDFFVKMNATESPYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAFGDR 360
V ++ FV P V F +V + + + + D + T
Sbjct: 275 LSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST---VAV 331
Query: 361 DGSVRLF--RGETHGKIVEPRGPDTFGWDSCFQPDG 394
DG +F + K R + + P
Sbjct: 332 DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI 367
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 28.3 bits (63), Expect = 5.0
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 354 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFG---WDSCFQPDGFKQTYA 400
DGS+ +++ + K V+ + F + Q Y
Sbjct: 25 LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74
Score = 27.9 bits (62), Expect = 6.5
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 244 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFG---WDSCFQPDG 284
DGS+ +++ + K V+ + F +
Sbjct: 25 LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 28.5 bits (64), Expect = 5.2
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 17/76 (22%)
Query: 226 GLHKMLAGFEDKSAIAVCTF----------AFGDRDGSVRLFRGETHGKIVEP-RG---- 270
G K+L E I TF A GD G++ ++ E V +G
Sbjct: 54 GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEI 113
Query: 271 --PDTFGWDSCFQPDG 284
Sbjct: 114 INAIDGIGGLGIGEGA 129
Score = 28.1 bits (63), Expect = 6.0
Identities = 13/77 (16%), Positives = 19/77 (24%), Gaps = 17/77 (22%)
Query: 335 TGLYKMLAGFEDKSAKAICTF----------AFGDRDGSVRLFRGETHGKIVEP-RG--- 380
G K+L E TF A GD G++ ++ E V +G
Sbjct: 53 HGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE 112
Query: 381 ---PDTFGWDSCFQPDG 394
Sbjct: 113 IINAIDGIGGLGIGEGA 129
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 28.5 bits (63), Expect = 5.5
Identities = 9/50 (18%), Positives = 12/50 (24%), Gaps = 4/50 (8%)
Query: 244 TFAFGDRDGSVRLFR---GETHGKIVEP-RGPDTFGWDSCFQPDGFEQTY 289
T D+ G V EP G + D D +
Sbjct: 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF 212
Score = 28.1 bits (62), Expect = 5.8
Identities = 9/50 (18%), Positives = 12/50 (24%), Gaps = 4/50 (8%)
Query: 354 TFAFGDRDGSVRLFR---GETHGKIVEP-RGPDTFGWDSCFQPDGFKQTY 399
T D+ G V EP G + D D +
Sbjct: 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF 212
>4dzi_A Putative TIM-barrel metal-dependent hydrolase; amidohydrolase,
bimetal binding site, enzyme FUNC initiative, EFI; HET:
SO4; 1.60A {Mycobacterium avium subsp}
Length = 423
Score = 28.0 bits (62), Expect = 7.0
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 8/62 (12%)
Query: 367 FRGETHGKIVEPRGPD--TFG-----WDSCFQPDGFKQTYAEMPKEQKNRISHRN-KAVL 418
+ + ++ G D FG + P F + +I N +L
Sbjct: 334 YYEDDLPELARVIGVDKILFGSDWPHGEGLASPVSFTAELKGFSESDIRKIMRDNALDLL 393
Query: 419 KL 420
+
Sbjct: 394 GV 395
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 27.8 bits (61), Expect = 7.1
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 245 FAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSC-FQPDG 284
F + D G++ E + + + S D
Sbjct: 142 FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS 182
Score = 27.8 bits (61), Expect = 7.1
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 355 FAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSC-FQPDG 394
F + D G++ E + + + S D
Sbjct: 142 FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS 182
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 27.9 bits (63), Expect = 7.8
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 246 AFGDRDGSVRLFRGETHGKIVEP-RGPDTFGWDSCFQPDG 284
G D +V +F G K F + PDG
Sbjct: 164 ISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDG 202
Score = 27.9 bits (63), Expect = 7.8
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 356 AFGDRDGSVRLFRGETHGKIVEP-RGPDTFGWDSCFQPDG 394
G D +V +F G K F + PDG
Sbjct: 164 ISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDG 202
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.423
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,852,451
Number of extensions: 416035
Number of successful extensions: 937
Number of sequences better than 10.0: 1
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 50
Length of query: 441
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 345
Effective length of database: 4,021,377
Effective search space: 1387375065
Effective search space used: 1387375065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.9 bits)