RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14444
(441 letters)
>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase,
ITPase {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 93.4 bits (231), Expect = 7e-23
Identities = 88/159 (55%), Positives = 116/159 (72%), Gaps = 2/159 (1%)
Query: 163 IEDELPIQTVYLKFSIGTYEKHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLKKI 222
+ ++ + + + +K + A++ + V+VEDTCLCFNALGGLPGPY+KWFL+K+
Sbjct: 36 VAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKL 95
Query: 223 GPAGLHKMLAGFEDKSAIAVCTFAF--GDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCF 280
P GLH++LAGFEDKSA A+CTFA GD VRLFRG T G+IV PRG FGWD CF
Sbjct: 96 KPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCF 155
Query: 281 QPDGFEQTYAEMLKEQKNQISHRNKAVLKLQDFFVKMNA 319
QPDG+EQTYAEM K +KN +SHR +A+L+LQ++F + A
Sbjct: 156 QPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGSLAA 194
Score = 83.0 bits (204), Expect = 4e-19
Identities = 69/119 (57%), Positives = 88/119 (73%), Gaps = 2/119 (1%)
Query: 313 FFVKMNATESPYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAF--GDRDGSVRLFRGE 370
F + PY+KWFL+K+ P GL+++LAGFEDKSA A+CTFA GD VRLFRG
Sbjct: 76 CFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGR 135
Query: 371 THGKIVEPRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFFVKMNA 429
T G+IV PRG FGWD CFQPDG++QTYAEMPK +KN +SHR +A+L+LQ++F + A
Sbjct: 136 TSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGSLAA 194
>d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 93.3 bits (231), Expect = 1e-22
Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 13/181 (7%)
Query: 144 LENIVPTLYTSTYTYLKFEIEDELPIQTVYLKFSIGTYEKHKRAIKAINDRVIVEDTCLC 203
L +++ ++ + L F K + A K I +D+ L
Sbjct: 29 LASLLSDFGLDIVAQTDLGVDS---AEETGLTFIENAILKARHAAKVTALPAIADDSGLA 85
Query: 204 FNALGGLPGPYVKWFLKKIGP-------AGLHKMLAGFEDKSAIAVCTFAF--GDRDGSV 254
+ LGG PG Y + + + + A C + D +
Sbjct: 86 VDVLGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHCVLVYLRHAEDPTP 145
Query: 255 RLFRGETHGKIV-EPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISHRNKAVLKLQDF 313
+ G G I EP G FG+D F +T AE+ +E+K+ ISHR +A+ L D
Sbjct: 146 LVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLLLDA 205
Query: 314 F 314
Sbjct: 206 L 206
Score = 80.6 bits (198), Expect = 3e-18
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 338 YKMLAGFEDKSAKAICTFAF--GDRDGSVRLFRGETHGKIV-EPRGPDTFGWDSCFQPDG 394
+ + A+ C + D + + G G I EP G FG+D F
Sbjct: 117 TMKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPS 176
Query: 395 FKQTYAEMPKEQKNRISHRNKAVLKLQDFF 424
+T AE+ +E+K+ ISHR +A+ L D
Sbjct: 177 EGKTAAELTREEKSAISHRGQALKLLLDAL 206
>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 186
Score = 87.6 bits (216), Expect = 7e-21
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Query: 190 AINDRVIVEDTCLCFNALGGLPGPYVKWFLKKIGPAGLHKMLAGFEDKSAIAVCTFAFGD 249
+ + ++ED+ L +L G PG Y + + IG G+ K++ G ED+ A F
Sbjct: 56 KVPEPFMIEDSGLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGF-Y 114
Query: 250 RDGSVRLFRGETHGKIVE-PRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISHRNKAVL 308
DG F G T G+I RG FG+D F P+G E+T+AEM E+KN +SHR KA+
Sbjct: 115 IDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKALK 174
Query: 309 KLQDFF 314
++
Sbjct: 175 AFFEWL 180
Score = 78.4 bits (192), Expect = 1e-17
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 313 FFVKMNATESPYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAFGDRDGSVRLFRGETH 372
F + Y + + +G G+ K++ G ED+ A F DG F G T
Sbjct: 69 FIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGF-YIDGKAYKFSGVTW 127
Query: 373 GKIVE-PRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFF 424
G+I RG FG+D F P+G ++T+AEM E+KN +SHR KA+ ++
Sbjct: 128 GRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKALKAFFEWL 180
>d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate
pyrophosphatase TM0159 {Thermotoga maritima [TaxId:
2336]}
Length = 189
Score = 86.1 bits (212), Expect = 2e-20
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 165 DELPIQTVYLKFSIGTYEKHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLK---- 220
+++ + F + +K K + V+ +D+ L +LGG PG F++
Sbjct: 32 EKIEVVEDGETFLENSVKKAVVYGKKLKHPVMADDSGLVIYSLGGFPGVMSARFMEEHSY 91
Query: 221 KIGPAGLHKMLAGFEDKSAIAVCTFAFGDRDGSVRLFRGE-THGKIVEPRGPDTFGWDSC 279
K + KML G + ++A F + ++ E RG FG+D
Sbjct: 92 KEKMRTILKMLEGKDRRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPF 151
Query: 280 FQPDGFEQTYAEMLKEQKNQISHRNKAVLKLQDFFVKM 317
F PDG+++T+ E+ K +ISHR+KA KL K+
Sbjct: 152 FIPDGYDKTFGEI-PHLKEKISHRSKAFRKLFSVLEKI 188
Score = 78.3 bits (192), Expect = 1e-17
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 313 FFVKMNATESPYVKWFLK----KVGPTGLYKMLAGFEDKSAKAICTFAFGDRDGSVRLFR 368
+ F++ K + KML G + ++A F + ++
Sbjct: 70 VIYSLGGFPGVMSARFMEEHSYKEKMRTILKMLEGKDRRAAFVCSATFFDPVENTLISVE 129
Query: 369 GE-THGKIVEPRGPDTFGWDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFFVKM 427
E RG FG+D F PDG+ +T+ E+P K +ISHR+KA KL K+
Sbjct: 130 DRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGEIP-HLKEKISHRSKAFRKLFSVLEKI 188
Score = 29.8 bits (66), Expect = 0.49
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 5 HQDIDLPELQGEIDDVCTKKCERAIKVINDRVIVEDTCLCFNALGGLPGQ 54
+ I++ E + KK K + V+ +D+ L +LGG PG
Sbjct: 31 PEKIEVVEDGETFLENSVKKAVVYGKKLKHPVMADDSGLVIYSLGGFPGV 80
>d1b78a_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 184
Score = 81.1 bits (199), Expect = 2e-18
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 3/153 (1%)
Query: 164 EDELPIQTVYLKFSIGTYEKHKRAIKAINDRVIVEDTCLCFNALGGLPGPYVKWFLKKIG 223
+ ++ + K + VIVED+ AL G PG Y K+ + IG
Sbjct: 29 QIKISYPEIQGTLEEVAEFGAKWVYNILKKPVIVEDSGFFVEALNGFPGTYSKFVQETIG 88
Query: 224 PAGLHKMLAGFEDKSAIAVCTFAFGDRDGSVRLFRGETHGKIVEPRGPDTFG--WDSCFQ 281
G+ K+L G +++ T + VRLF+G G++ E +G +DS F
Sbjct: 89 NEGILKLLEGKDNR-NAYFKTVIGYCDENGVRLFKGIVKGRVSEEIRSKGYGFAYDSIFI 147
Query: 282 PDGFEQTYAEMLKEQKNQISHRNKAVLKLQDFF 314
P+ E+T+AEM E+K+QISHR KA + + F
Sbjct: 148 PEEEERTFAEMTTEEKSQISHRKKAFEEFKKFL 180
Score = 72.3 bits (176), Expect = 2e-15
Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 313 FFVKMNATESPYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAFGDRDGSVRLFRGETH 372
F +N Y K+ + +G G+ K+L G ++++A + + VRLF+G
Sbjct: 68 FVEALNGFPGTYSKFVQETIGNEGILKLLEGKDNRNAYFKTVIGY-CDENGVRLFKGIVK 126
Query: 373 GKIVEPRGPDTFG--WDSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFF 424
G++ E +G +DS F P+ ++T+AEM E+K++ISHR KA + + F
Sbjct: 127 GRVSEEIRSKGYGFAYDSIFIPEEEERTFAEMTTEEKSQISHRKKAFEEFKKFL 180
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 32.8 bits (73), Expect = 0.074
Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 8/152 (5%)
Query: 244 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISHR 303
A D +VR++ T E R + P+ + +E + +
Sbjct: 157 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 216
Query: 304 NKAVL-KLQDFFVKMNATESPYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAFGDRDG 362
+L +D +KM + + VG + + D
Sbjct: 217 GPFLLSGSRDKTIKMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGK-----FILSCADDK 269
Query: 363 SVRLFRGETHGKIVEPRGPDTFGWDSCFQPDG 394
++R++ + + + F F
Sbjct: 270 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 301
Score = 30.9 bits (68), Expect = 0.33
Identities = 19/188 (10%), Positives = 43/188 (22%), Gaps = 16/188 (8%)
Query: 244 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISHR 303
D +++++ ET +G D F G K
Sbjct: 31 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 90
Query: 304 NKAVLKLQDFFVKMNATESPYVKWFL--------KKVGPTGLYKMLAGFEDKSAKAIC-- 353
+ + + +++ + K+ + F
Sbjct: 91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 150
Query: 354 ------TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGFKQTYAEMPKEQK 407
A D +VR++ T E R + P+ + +E +
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 210
Query: 408 NRISHRNK 415
+
Sbjct: 211 KKSGKPGP 218
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 32.1 bits (71), Expect = 0.13
Identities = 25/187 (13%), Positives = 51/187 (27%), Gaps = 14/187 (7%)
Query: 221 KIGPAGLHKMLAGFEDK--SAIAVC--TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGW 276
+ G K+L G +D + + C G D +++++ T + G W
Sbjct: 2 RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Query: 277 DSCFQPDGFEQTYAEMLKEQKNQISHRNKAVLKLQDFFVKMNATESPYVKW-------FL 329
S + + + + N + L V+ V +
Sbjct: 62 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121
Query: 330 KKVGPTGLYKMLAGFEDKSAKAICT---FAFGDRDGSVRLFRGETHGKIVEPRGPDTFGW 386
+ +L G G D V+++ ET + +G +
Sbjct: 122 WDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 181
Query: 387 DSCFQPD 393
F
Sbjct: 182 SLQFDGI 188
Score = 27.9 bits (60), Expect = 2.6
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 4/102 (3%)
Query: 331 KVGPTGLYKMLAGFEDKSAKAIC----TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGW 386
+ G K+L G +D + G D +++++ T + G W
Sbjct: 2 RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Query: 387 DSCFQPDGFKQTYAEMPKEQKNRISHRNKAVLKLQDFFVKMN 428
S + + + + N + L V+
Sbjct: 62 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM 103
>d1iqqa_ d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyrifolia)
[TaxId: 3767]}
Length = 200
Score = 28.6 bits (63), Expect = 1.2
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 115 QNHHQFDSTTTIRYSNIGMKNLDLYTWLKLENIVPTLYTSTYTYLKFEIEDELPIQTVYL 174
N + + T Y + K ++ L I P ++ I + + L
Sbjct: 97 DNENHYFETVIKMYIS---KKQNVSRILSKAKIEPDGKKRALLDIENAIRNGADNKKPKL 153
Query: 175 K 175
K
Sbjct: 154 K 154
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 316
Score = 28.4 bits (63), Expect = 1.5
Identities = 38/253 (15%), Positives = 74/253 (29%), Gaps = 40/253 (15%)
Query: 147 IVPTLYTSTYTYLKFEIEDELPIQTVYLKFSIGTYEKHKRAIKAINDRVIVEDTCLCFNA 206
++P T Y LK + + +P Q + + N V++ + F +
Sbjct: 22 VLPEYNTPLYYKLKSYLINSIPSQFMRYDI-----------LSNRNLTFYVDNLLVQFVS 70
Query: 207 -LGGLPGPYVKWFLKKIGPAGLHKMLAGFE----DKSAIAVCTFAFGDRDGSVRLFRGET 261
LGG P W L G ++ G D + F +DG++
Sbjct: 71 KLGGKP-----WILNVDPEKG-SDIIIGTGATRIDNVNLFCFAMVF-KKDGTMLWNEISP 123
Query: 262 HGKIVEPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISHRNKAVLKLQDFFV--KMNA 319
E + T +++ K + L L KM
Sbjct: 124 IVTSSE-------------YLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKD 170
Query: 320 TESPYVKWFLKKVGPTGLYKMLAGFE-DKSAKAICTFAFGDRDGSVRLFRGETHGKIVEP 378
E+ +K ++++ + + + + GD + + G T K+
Sbjct: 171 GETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEG-TKVKLSSK 229
Query: 379 RGPDTFGWDSCFQ 391
R T +
Sbjct: 230 RYLLTLLQPYLKR 242
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
10891]}
Length = 1264
Score = 28.0 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 102 VDFLHSLRKKTETQNHHQFDSTTTIR 127
+ LRK+T+T H F S IR
Sbjct: 340 SSVVGELRKRTKTYVKHDFASVRYIR 365
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 27.5 bits (59), Expect = 3.6
Identities = 5/41 (12%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 244 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDG 284
F +D + +R I + + + D
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQSKESSSV-LSCDISVDD 318
Score = 27.5 bits (59), Expect = 3.6
Identities = 5/41 (12%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 354 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDG 394
F +D + +R I + + + D
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQSKESSSV-LSCDISVDD 318
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA
{Treponema pallidum [TaxId: 160]}
Length = 277
Score = 26.9 bits (58), Expect = 4.8
Identities = 11/73 (15%), Positives = 20/73 (27%)
Query: 228 HKMLAGFEDKSAIAVCTFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGFEQ 287
+ LA F + + +V R + + D+ E
Sbjct: 199 MQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQARGHVVQIGGELFSDAMGDAGTSEG 258
Query: 288 TYAEMLKEQKNQI 300
TY M+ + I
Sbjct: 259 TYVGMVTHNIDTI 271
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 27.0 bits (58), Expect = 5.0
Identities = 18/152 (11%), Positives = 33/152 (21%), Gaps = 24/152 (15%)
Query: 243 CTFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGFEQTYAEMLKEQKNQISH 302
F G D S +L+ G ++ CF P+G
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG------------------ 238
Query: 303 RNKAVLKLQDFFVKMNATESPYVKWFLKKVGPTGLYKMLAGFEDKSAKAICTFAFGDRDG 362
N D ++ + ++ + G D
Sbjct: 239 -NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-----LLLAGYDDF 292
Query: 363 SVRLFRGETHGKIVEPRGPDTFGWDSCFQPDG 394
+ ++ + G D DG
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 26.8 bits (57), Expect = 5.9
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 244 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGF 285
G D +R++ +++ G D W + G
Sbjct: 25 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66
Score = 26.8 bits (57), Expect = 5.9
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 354 TFAFGDRDGSVRLFRGETHGKIVEPRGPDTFGWDSCFQPDGF 395
G D +R++ +++ G D W + G
Sbjct: 25 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66
>d3b7sa1 a.118.1.7 (A:461-610) Leukotriene A4 hydrolase C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 25.6 bits (56), Expect = 9.9
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 323 PYVKWFLKKVG----PTGLYKMLAGFEDKSAKAICTFA 356
P + G L+K LA F+ +A+ T+
Sbjct: 92 PLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQ 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.423
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,684,277
Number of extensions: 81718
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 35
Length of query: 441
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 353
Effective length of database: 1,199,356
Effective search space: 423372668
Effective search space used: 423372668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)